BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026815
         (232 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5USR6|RPOC_ROSS1 DNA-directed RNA polymerase subunit beta' OS=Roseiflexus sp.
           (strain RS-1) GN=rpoC PE=3 SV=1
          Length = 1504

 Score = 32.3 bits (72), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 17/97 (17%)

Query: 89  LVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHY 148
           L R    + P +I+++ +  L   +   ID G +G AVS              +G HR  
Sbjct: 445 LKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRAVSG-------------KGKHRLK 491

Query: 149 TLNETFVIWGAKTKFR--LENNQIDDKGYAEVIVGAD 183
           +L++  ++ G + +FR  L   ++D  G + ++VG D
Sbjct: 492 SLSD--MLKGKQGRFRQNLLGKRVDYSGRSVIVVGPD 526


>sp|A7NJM0|RPOC_ROSCS DNA-directed RNA polymerase subunit beta' OS=Roseiflexus
           castenholzii (strain DSM 13941 / HLO8) GN=rpoC PE=3 SV=1
          Length = 1502

 Score = 32.3 bits (72), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 17/97 (17%)

Query: 89  LVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHY 148
           L R    + P +I+++ +  L   +   ID G +G AVS              +G HR  
Sbjct: 445 LKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRAVSG-------------KGKHRLK 491

Query: 149 TLNETFVIWGAKTKFR--LENNQIDDKGYAEVIVGAD 183
           +L++  ++ G + +FR  L   ++D  G + ++VG D
Sbjct: 492 SLSD--MLKGKQGRFRQNLLGKRVDYSGRSVIVVGPD 526


>sp|Q03FZ4|EX7L_PEDPA Exodeoxyribonuclease 7 large subunit OS=Pediococcus pentosaceus
          (strain ATCC 25745 / 183-1w) GN=xseA PE=3 SV=1
          Length = 447

 Score = 31.6 bits (70), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)

Query: 29 TVSILLNFLKRP-QAFPFLLSIFVLLTWLSLRLQHSSSQFELNKNNHEKWSSTKDDDVKA 87
          TVS L N++KR   A P+L  ++++            S F L  N+H+ + S KD++ K 
Sbjct: 8  TVSALTNYIKRKFDADPYLHRVYLV---------GEISNFRLRTNSHQ-YFSLKDENAKI 57

Query: 88 NLVRFKS 94
          + + FKS
Sbjct: 58 SAIMFKS 64


>sp|B3R0F5|SYS_PHYMT Serine--tRNA ligase OS=Phytoplasma mali (strain AT) GN=serS PE=3
           SV=1
          Length = 423

 Score = 31.2 bits (69), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 22  FNVQNLSTVSILLNFLKRPQAFPFLLSIFVLLTWLSLRLQHSSSQFELNKNNHEKWSSTK 81
           FN+++  T+   LN L   +A     S F++   L  RL+ S  QF ++ ++ + +    
Sbjct: 135 FNIKDHVTLGRNLNILDFDRASKITGSRFIVYKGLGARLERSLIQFMMDLHSEKGYIEII 194

Query: 82  DDDVKANLVRFKSDHLP-----SLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEI 136
              +  ++  F +  LP     S  L++   W LNP           G V  ++LH  E+
Sbjct: 195 PPFIVNDISMFSTGQLPKFKNDSYRLENSNNWYLNP----------TGEVPAINLHRNEV 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,615,671
Number of Sequences: 539616
Number of extensions: 3627194
Number of successful extensions: 7793
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7791
Number of HSP's gapped (non-prelim): 6
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)