Query 026815
Match_columns 232
No_of_seqs 91 out of 93
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 13:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1898 RfbC dTDP-4-dehydrorha 99.7 3.4E-16 7.4E-21 132.7 10.4 115 97-214 14-133 (173)
2 PF05523 FdtA: WxcM-like, C-te 99.5 1.1E-14 2.5E-19 116.0 5.8 112 96-219 5-116 (131)
3 PF06560 GPI: Glucose-6-phosph 98.9 3.4E-09 7.3E-14 90.7 7.5 73 130-205 51-137 (182)
4 TIGR01221 rmlC dTDP-4-dehydror 98.9 8E-09 1.7E-13 87.3 8.9 112 97-212 13-131 (176)
5 PF00908 dTDP_sugar_isom: dTDP 98.9 9.5E-09 2.1E-13 86.6 8.8 105 97-204 12-124 (176)
6 COG0662 {ManC} Mannose-6-phosp 98.4 3E-06 6.6E-11 66.5 8.9 79 127-216 34-112 (127)
7 TIGR03404 bicupin_oxalic bicup 98.2 8.7E-06 1.9E-10 75.2 9.4 103 102-216 224-326 (367)
8 PRK04190 glucose-6-phosphate i 98.0 7.1E-05 1.5E-09 64.3 10.1 76 130-210 69-152 (191)
9 PF00190 Cupin_1: Cupin; Inte 98.0 5.9E-05 1.3E-09 59.6 8.8 81 130-214 35-119 (144)
10 smart00835 Cupin_1 Cupin. This 97.9 0.00013 2.9E-09 57.7 9.7 79 130-214 31-109 (146)
11 PF07883 Cupin_2: Cupin domain 97.2 0.0022 4.9E-08 43.4 6.9 66 134-209 3-68 (71)
12 PF01050 MannoseP_isomer: Mann 97.1 0.002 4.2E-08 53.6 7.1 73 130-213 64-136 (151)
13 TIGR01479 GMP_PMI mannose-1-ph 97.1 0.0023 4.9E-08 60.4 8.4 75 128-213 375-449 (468)
14 COG2140 Thermophilic glucose-6 97.0 0.0044 9.5E-08 55.1 8.9 79 134-217 85-166 (209)
15 PRK15460 cpsB mannose-1-phosph 96.9 0.0044 9.5E-08 59.7 8.6 75 129-214 385-459 (478)
16 TIGR03214 ura-cupin putative a 96.8 0.0086 1.9E-07 52.9 8.7 73 128-210 178-250 (260)
17 COG3837 Uncharacterized conser 96.7 0.0065 1.4E-07 52.4 7.6 71 130-210 43-116 (161)
18 PRK13290 ectC L-ectoine syntha 96.4 0.023 5E-07 45.7 8.3 62 130-201 36-98 (125)
19 PRK09943 DNA-binding transcrip 96.3 0.023 5E-07 46.6 8.0 75 129-213 107-181 (185)
20 TIGR03404 bicupin_oxalic bicup 96.0 0.043 9.3E-07 51.1 9.1 103 99-215 43-145 (367)
21 COG1917 Uncharacterized conser 95.7 0.15 3.1E-06 39.5 9.5 78 127-215 41-118 (131)
22 PF02041 Auxin_BP: Auxin bindi 94.8 0.14 3E-06 44.6 7.6 71 130-203 45-116 (167)
23 PRK11171 hypothetical protein; 94.1 0.43 9.3E-06 42.3 9.2 73 130-212 62-135 (266)
24 PLN00212 glutelin; Provisional 92.9 0.46 1E-05 46.7 8.1 70 128-201 345-416 (493)
25 PRK11171 hypothetical protein; 92.8 1.1 2.3E-05 39.9 9.5 71 130-210 185-255 (266)
26 PRK13264 3-hydroxyanthranilate 92.1 0.94 2E-05 39.5 8.1 66 130-202 34-100 (177)
27 PLN00212 glutelin; Provisional 87.4 3.7 7.9E-05 40.6 9.0 108 95-215 51-184 (493)
28 PF09313 DUF1971: Domain of un 86.7 3.8 8.3E-05 31.4 6.9 61 138-203 12-75 (82)
29 TIGR03037 anthran_nbaC 3-hydro 84.6 7.2 0.00016 33.5 8.3 66 130-202 28-94 (159)
30 PRK12335 tellurite resistance 84.4 2.6 5.6E-05 37.0 5.8 65 135-202 17-82 (287)
31 PRK13502 transcriptional activ 83.1 4.8 0.0001 34.2 6.7 72 131-213 20-91 (282)
32 PRK10296 DNA-binding transcrip 80.9 8.5 0.00018 32.7 7.4 52 139-201 33-84 (278)
33 TIGR03214 ura-cupin putative a 80.6 11 0.00025 33.4 8.4 73 130-212 59-132 (260)
34 TIGR02272 gentisate_1_2 gentis 79.1 6.1 0.00013 37.2 6.5 75 132-217 84-158 (335)
35 TIGR02272 gentisate_1_2 gentis 79.1 5.2 0.00011 37.7 6.0 71 133-217 254-324 (335)
36 PRK13500 transcriptional activ 79.0 8.1 0.00018 34.1 6.9 62 131-203 50-111 (312)
37 TIGR02297 HpaA 4-hydroxyphenyl 77.4 6.6 0.00014 33.2 5.7 51 143-203 37-87 (287)
38 PF03079 ARD: ARD/ARD' family; 74.4 8.6 0.00019 32.5 5.5 51 143-199 86-136 (157)
39 PF02311 AraC_binding: AraC-li 73.9 11 0.00024 27.0 5.3 56 137-203 11-66 (136)
40 PRK13501 transcriptional activ 72.8 14 0.00029 31.9 6.5 55 137-202 26-80 (290)
41 PF11699 CENP-C_C: Mif2/CENP-C 69.9 22 0.00049 27.4 6.5 60 135-205 18-78 (85)
42 COG4101 Predicted mannose-6-ph 65.8 39 0.00084 29.0 7.6 78 131-215 48-125 (142)
43 PF05899 Cupin_3: Protein of u 63.3 24 0.00052 25.6 5.2 51 135-197 13-63 (74)
44 PF12973 Cupin_7: ChrR Cupin-l 62.9 22 0.00047 26.2 5.1 56 130-200 25-80 (91)
45 COG1791 Uncharacterized conser 61.0 23 0.00049 31.6 5.6 70 123-199 63-139 (181)
46 PF00354 Pentaxin: Pentaxin fa 49.7 20 0.00042 30.6 3.3 74 139-231 79-157 (195)
47 PF07385 DUF1498: Protein of u 47.8 68 0.0015 29.4 6.6 70 132-201 90-177 (225)
48 PRK10371 DNA-binding transcrip 41.3 79 0.0017 28.1 5.9 64 131-205 28-91 (302)
49 COG4037 Predicted membrane pro 39.9 63 0.0014 28.2 4.9 104 31-141 8-122 (163)
50 KOG1407 WD40 repeat protein [F 37.7 1.4E+02 0.0031 28.6 7.2 63 145-209 71-133 (313)
51 PRK13503 transcriptional activ 37.4 93 0.002 26.2 5.5 49 143-202 29-77 (278)
52 PRK15457 ethanolamine utilizat 33.1 1.6E+02 0.0034 27.1 6.6 79 106-205 142-220 (233)
53 COG4297 Uncharacterized protei 32.6 1.2E+02 0.0025 26.8 5.4 54 139-199 53-106 (163)
54 PF13621 Cupin_8: Cupin-like d 30.3 82 0.0018 25.6 4.0 69 130-201 132-232 (251)
55 PLN02634 probable pectinestera 29.8 4.4E+02 0.0095 25.5 9.2 22 43-64 9-30 (359)
56 COG3190 FliO Flagellar biogene 29.5 46 0.00099 28.3 2.4 21 42-62 30-50 (137)
57 COG5257 GCD11 Translation init 26.2 1.1E+02 0.0023 30.4 4.5 55 119-194 234-293 (415)
58 TIGR03500 FliO_TIGR flagellar 25.4 55 0.0012 23.3 1.9 18 45-62 3-20 (69)
59 smart00159 PTX Pentraxin / C-r 25.2 84 0.0018 26.6 3.3 75 139-231 85-163 (206)
60 PF14499 DUF4437: Domain of un 24.9 1.2E+02 0.0026 27.8 4.4 74 130-212 170-244 (251)
61 PF02373 JmjC: JmjC domain, hy 23.0 61 0.0013 23.6 1.8 27 175-203 80-106 (114)
62 PF02210 Laminin_G_2: Laminin 22.6 2.9E+02 0.0064 19.7 6.7 48 130-195 40-87 (128)
63 PRK10572 DNA-binding transcrip 22.1 3.1E+02 0.0067 23.5 6.2 56 128-202 36-91 (290)
64 PF12841 YvrJ: YvrJ protein fa 22.0 66 0.0014 21.9 1.7 13 41-53 6-18 (38)
65 TIGR03066 Gem_osc_para_1 Gemma 21.6 1.3E+02 0.0027 24.8 3.5 41 157-197 42-82 (111)
66 PRK11056 hypothetical protein; 21.2 78 0.0017 26.6 2.3 20 43-63 95-114 (120)
67 PF08007 Cupin_4: Cupin superf 20.5 5.2E+02 0.011 23.5 7.5 80 130-213 115-210 (319)
68 COG3435 Gentisate 1,2-dioxygen 20.2 2E+02 0.0044 28.0 5.0 88 103-217 82-169 (351)
69 PF07226 DUF1422: Protein of u 20.0 86 0.0019 26.3 2.3 19 43-62 95-113 (117)
No 1
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=3.4e-16 Score=132.67 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=93.7
Q ss_pred cccceeccCCccchhhhhhhhhhccCCCceeeeeEEEeeecCCccccccccccc-ceEEEEEecceeEEEeecCCCCc--
Q 026815 97 LPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTL-NETFVIWGAKTKFRLENNQIDDK-- 173 (232)
Q Consensus 97 ypl~m~~D~RGsftE~ikt~~~agl~gGa~~cgQvsVn~~kPGitRGNHwHhTK-nEkFiVv~G~g~iRlR~i~~~de-- 173 (232)
++++++.|+||+|+|.++.....-.. =.+..+|.+++.++||++||.|||+.+ .+.+.+++|+..+.+.++- .++
T Consensus 14 ~~~~~~~D~RG~F~E~~~~~~~~~~~-~~~~~~Q~n~S~S~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR-~~SpT 91 (173)
T COG1898 14 IEPKVFGDERGFFTETFKAEEFSTLG-LPLDFVQDNHSFSYPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLR-KDSPT 91 (173)
T ss_pred ECCcccccccceeeehhhhhhhhhcc-CccccccceEEEecCCeeEEEEcccCCCCeEEEEecCeEEEEEEEcc-CCCCC
Confidence 57899999999999999944222111 112788999999999999999999999 9999999999999999998 333
Q ss_pred --ceEEEEEcCceEEEEecCCCceeeeeecCccceeeeecccc
Q 026815 174 --GYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFFIGCQD 214 (232)
Q Consensus 174 --g~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~gCqD 214 (232)
-+..++++++..+.+.+|+|+||.+.|++..- ++..=|.|
T Consensus 92 yg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~-~~~y~~~~ 133 (173)
T COG1898 92 YGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA-EVVYKVTE 133 (173)
T ss_pred cceEEEEEecCCCceEEEeCCcccceeEEccCce-EEEEEecc
Confidence 27788889998999999999999999999554 44444443
No 2
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=99.53 E-value=1.1e-14 Score=116.01 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=70.0
Q ss_pred CcccceeccCCccchhhhhhhhhhccCCCceeeeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcce
Q 026815 96 HLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGY 175 (232)
Q Consensus 96 ~ypl~m~~D~RGsftE~ikt~~~agl~gGa~~cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~ 175 (232)
+.+++...|+||.++.+.+... +... --....+..+++|++||+|+|+.+.|.|++++|+.+|.+.+.. + .
T Consensus 5 ii~l~~~~D~RG~L~~~e~~~~---ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~---~-~ 75 (131)
T PF05523_consen 5 IIKLKKISDERGSLSVIERFDD---IPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR---E-E 75 (131)
T ss_dssp EEE--EEEETTEEEEEEETTTS---SSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-----E
T ss_pred EEECCceeCCCCcEEEEeccCC---CCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC---C-c
Confidence 4568889999999999888841 2222 2236667789999999999999999999999999999998755 2 4
Q ss_pred EEEEEcCceEEEEecCCCceeeeeecCccceeeeecccccccCC
Q 026815 176 AEVIVGADEVAIAASPQGTAHALVNADLIHSTFFIGCQDGVINN 219 (232)
Q Consensus 176 ~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~gCqD~~~n~ 219 (232)
-||.++.++ +++.+|||+.|.+.|.+.- +..+. +.|-+-+.
T Consensus 76 ~~~~L~~~~-~~L~Ippg~w~~~~~~s~~-svlLv-~as~~yd~ 116 (131)
T PF05523_consen 76 EEFILDEPN-KGLYIPPGVWHGIKNFSED-SVLLV-LASEPYDE 116 (131)
T ss_dssp EEEEE--TT-EEEEE-TT-EEEEE---TT--EEEE-EESS---G
T ss_pred EEEEECCCC-eEEEECCchhhHhhccCCC-cEEEE-EcCCCCCh
Confidence 799999999 9999999999999999965 43333 44444433
No 3
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.91 E-value=3.4e-09 Score=90.74 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=43.3
Q ss_pred eEEEeeecCCc-------ccccccccc------cceEEEEEecceeEEEeecCCCCcceEEE-EEcCceEEEEecCCCce
Q 026815 130 SLHVGEIQPGA-------LRGNHRHYT------LNETFVIWGAKTKFRLENNQIDDKGYAEV-IVGADEVAIAASPQGTA 195 (232)
Q Consensus 130 QvsVn~~kPGi-------tRGNHwHhT------KnEkFiVv~G~g~iRlR~i~~~deg~~Ey-~Vsgdev~Vv~~P~GyT 195 (232)
+.-|.++.||. ||| |+|.. +.|.|.||+|+|.|.|++.+ .++ +.++ .|...+=.+|.+||||+
T Consensus 51 ~ygiTvi~Pg~vG~E~~~T~G-H~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~-~~~-~~~~~~v~~~~G~~v~IPp~ya 127 (182)
T PF06560_consen 51 RYGITVIPPGKVGGEYFMTKG-HYHPISPCGLSYPEVYEVLSGEGLILLQKEE-GDD-VGDVIAVEAKPGDVVYIPPGYA 127 (182)
T ss_dssp EEEEEEE---EETTEE-B----BB-SS----TT--EEEEEEESSEEEEEE-TT-S------EEEEEE-TTEEEEE-TT-E
T ss_pred EeeeEEEcCcccCCccccCCC-ccCCccccCCCCCcEEEEEeCEEEEEEEecC-CCc-ceeEEEEEeCCCCEEEECCCce
Confidence 44467788985 788 99987 99999999999999999988 433 4444 35556666778899999
Q ss_pred eeeeecCccc
Q 026815 196 HALVNADLIH 205 (232)
Q Consensus 196 HnIiNlg~~~ 205 (232)
|..+|.|...
T Consensus 128 H~tIN~g~~~ 137 (182)
T PF06560_consen 128 HRTINTGDEP 137 (182)
T ss_dssp EEEEE-SSS-
T ss_pred EEEEECCCCc
Confidence 9999999554
No 4
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=98.89 E-value=8e-09 Score=87.28 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=83.5
Q ss_pred cccceeccCCccchhhhhhh--hhhccCCCceeeeeEEEeeecCCcccccccccc--cceEEEEEecceeEEEeecCCCC
Q 026815 97 LPSLILKDRRGWLLNPISLA--IDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYT--LNETFVIWGAKTKFRLENNQIDD 172 (232)
Q Consensus 97 ypl~m~~D~RGsftE~ikt~--~~agl~gGa~~cgQvsVn~~kPGitRGNHwHhT--KnEkFiVv~G~g~iRlR~i~~~d 172 (232)
.+++...|+||+|+|..+.. .++|+. ....|..++.+++|++||-|+|.. -..-+-++.|+...=+=++-.+.
T Consensus 13 i~~~~~~D~RG~f~e~f~~~~~~~~g~~---~~~~Q~n~S~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~S 89 (176)
T TIGR01221 13 IEPRVFGDERGFFMETYNDEAFQEQGIP---VRFVQDNHSKSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNS 89 (176)
T ss_pred EeCcEEeeCCCCEEeeeehhhHHHcCCC---CCcceeEEEEecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCc
Confidence 45777899999999999886 233554 347899999999999999999943 22237778887766555553111
Q ss_pred ---cceEEEEEcCceEEEEecCCCceeeeeecCccceeeeecc
Q 026815 173 ---KGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFFIGC 212 (232)
Q Consensus 173 ---eg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~gC 212 (232)
-.+..+++++++-..+-+|+|.+|....++. .+++..-|
T Consensus 90 pTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d-~a~v~Y~~ 131 (176)
T TIGR01221 90 PTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSD-EAEFLYKC 131 (176)
T ss_pred CCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCC-CeEEEEeC
Confidence 1288999999999999999999999999873 34444333
No 5
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=98.87 E-value=9.5e-09 Score=86.57 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=80.0
Q ss_pred cccceeccCCccchhhhhhhh--hhccCCCceeeeeEEEeeecCCccccccccccc---ceEEEEEecceeEEEeecCC-
Q 026815 97 LPSLILKDRRGWLLNPISLAI--DAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTL---NETFVIWGAKTKFRLENNQI- 170 (232)
Q Consensus 97 ypl~m~~D~RGsftE~ikt~~--~agl~gGa~~cgQvsVn~~kPGitRGNHwHhTK---nEkFiVv~G~g~iRlR~i~~- 170 (232)
.+++...|+||+|+|..+... ++|+.. ...|..++.+++|++||-|+|... ..-+-|+.|+...=+=++-.
T Consensus 12 i~~~~~~D~RG~f~e~f~~~~~~~~~~~~---~~~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~ 88 (176)
T PF00908_consen 12 IEPKVFPDERGYFMETFREDEFAEAGLPP---EFVQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKG 88 (176)
T ss_dssp EEEEEEEETTEEEEEEEEHHHHHHHHSST----EEEEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTT
T ss_pred EECceeccCCEeEehHhhhHHHHHhcccc---ccCceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCC
Confidence 457888999999999998763 456655 578999999999999999999876 44466889987655554431
Q ss_pred --CCcceEEEEEcCceEEEEecCCCceeeeeecCcc
Q 026815 171 --DDKGYAEVIVGADEVAIAASPQGTAHALVNADLI 204 (232)
Q Consensus 171 --~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~ 204 (232)
+---+.++++++++-..+-+|+|.+|....++..
T Consensus 89 SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 89 SPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp STTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred CCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 1122899999999999999999999999999854
No 6
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=3e-06 Score=66.53 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=66.8
Q ss_pred eeeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccce
Q 026815 127 SCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHS 206 (232)
Q Consensus 127 ~cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~ 206 (232)
..-++-.-+++||.--+-|.|+...|.|+|++|.|++-++ ++ ++.|..++..+ +|+|..|.+.|.|. ..
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-----~~---~~~v~~gd~~~--iP~g~~H~~~N~G~-~~ 102 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-----GE---EVEVKAGDSVY--IPAGTPHRVRNTGK-IP 102 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-----CE---EEEecCCCEEE--ECCCCcEEEEcCCC-cc
Confidence 4558888899999998999999999999999999999887 23 57788887654 79999999999996 67
Q ss_pred eeeecccccc
Q 026815 207 TFFIGCQDGV 216 (232)
Q Consensus 207 ~~f~gCqD~~ 216 (232)
..|+.||-+.
T Consensus 103 L~liei~~p~ 112 (127)
T COG0662 103 LVLIEVQSPP 112 (127)
T ss_pred eEEEEEecCC
Confidence 7788887653
No 7
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.19 E-value=8.7e-06 Score=75.24 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=74.3
Q ss_pred eccCCccchhhhhhhhhhccCCCceeeeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEc
Q 026815 102 LKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVG 181 (232)
Q Consensus 102 ~~D~RGsftE~ikt~~~agl~gGa~~cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vs 181 (232)
..-..||. +.+... +-++..-.++..-.++||..+.-|||..-.|-+.|++|++.+++-+-+.. --++.|.
T Consensus 224 ~~~~gG~~-~~~~~~-----~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~---~~~~~l~ 294 (367)
T TIGR03404 224 KQVPGGTV-RIADST-----NFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGN---ARTFDYQ 294 (367)
T ss_pred eecCCceE-EEEChh-----hccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCc---EEEEEEC
Confidence 34455666 444443 22223345677888999999999999999999999999999988654412 2356677
Q ss_pred CceEEEEecCCCceeeeeecCccceeeeecccccc
Q 026815 182 ADEVAIAASPQGTAHALVNADLIHSTFFIGCQDGV 216 (232)
Q Consensus 182 gdev~Vv~~P~GyTHnIiNlg~~~~~~f~gCqD~~ 216 (232)
..++ +.+|+|+.|.|.|.|.. ..-|+.|.++.
T Consensus 295 ~GD~--~~iP~g~~H~i~N~G~e-~l~fL~if~s~ 326 (367)
T TIGR03404 295 AGDV--GYVPRNMGHYVENTGDE-TLVFLEVFKAD 326 (367)
T ss_pred CCCE--EEECCCCeEEEEECCCC-CEEEEEEECCC
Confidence 7764 45899999999999955 45566676663
No 8
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=97.97 E-value=7.1e-05 Score=64.35 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=56.3
Q ss_pred eEEEeeecCCcc------ccccccccc--ceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeec
Q 026815 130 SLHVGEIQPGAL------RGNHRHYTL--NETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNA 201 (232)
Q Consensus 130 QvsVn~~kPGit------RGNHwHhTK--nEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNl 201 (232)
.+-+-++.||-+ .=-|+|... -|.+.|++|+|.+.+...+ .+ ..++.+...++ +-+|+|+.|.++|.
T Consensus 69 ~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~-G~--~~~~~v~pGd~--v~IPpg~~H~~iN~ 143 (191)
T PRK04190 69 NFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE-GE--ARWIEMEPGTV--VYVPPYWAHRSVNT 143 (191)
T ss_pred EEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC-Cc--EEEEEECCCCE--EEECCCCcEEeEEC
Confidence 444566789984 224999855 4999999999999997554 22 56777877776 46899999999999
Q ss_pred Cccceeeee
Q 026815 202 DLIHSTFFI 210 (232)
Q Consensus 202 g~~~~~~f~ 210 (232)
|..-..|+.
T Consensus 144 G~epl~fl~ 152 (191)
T PRK04190 144 GDEPLVFLA 152 (191)
T ss_pred CCCCEEEEE
Confidence 965544443
No 9
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=97.96 E-value=5.9e-05 Score=59.57 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=57.3
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCC--CcceEEEE--EcCceEEEEecCCCceeeeeecCccc
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQID--DKGYAEVI--VGADEVAIAASPQGTAHALVNADLIH 205 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~--deg~~Ey~--Vsgdev~Vv~~P~GyTHnIiNlg~~~ 205 (232)
.+.+..++||..+--||| ..+|-++|+.|++.+.+-..+.. ..+..+.. |...++ +.+|+|+.|.|.|.+ -.
T Consensus 35 ~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv--~~vP~G~~h~~~n~~-~~ 110 (144)
T PF00190_consen 35 AVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDV--FVVPAGHPHWIINDG-DD 110 (144)
T ss_dssp EEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEE--EEE-TT-EEEEEECS-SS
T ss_pred EEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccc--eeeccceeEEEEcCC-CC
Confidence 667788899999999999 99999999999999988877621 01133333 555554 458999999999997 33
Q ss_pred eeeeecccc
Q 026815 206 STFFIGCQD 214 (232)
Q Consensus 206 ~~~f~gCqD 214 (232)
..+.+-|.|
T Consensus 111 ~~~~~~~f~ 119 (144)
T PF00190_consen 111 EALVLIIFD 119 (144)
T ss_dssp SEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 333344444
No 10
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=97.89 E-value=0.00013 Score=57.67 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=61.4
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeee
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFF 209 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f 209 (232)
++..-++.||..-.-|||....|-|.|+.|++.+.+..-+ +++ ..++.++..++ +.+|+|..|.++|.+.....|+
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~-~~~-~~~~~l~~GD~--~~ip~g~~H~~~n~~~~~~~~l 106 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPN-GNK-VYDARLREGDV--FVVPQGHPHFQVNSGDENLEFV 106 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCC-CCe-EEEEEecCCCE--EEECCCCEEEEEcCCCCCEEEE
Confidence 5556678999999999997677999999999999987654 233 56777777764 4579999999999986655554
Q ss_pred ecccc
Q 026815 210 IGCQD 214 (232)
Q Consensus 210 ~gCqD 214 (232)
|.+
T Consensus 107 --~~~ 109 (146)
T smart00835 107 --AFN 109 (146)
T ss_pred --EEe
Confidence 553
No 11
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.18 E-value=0.0022 Score=43.41 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=52.4
Q ss_pred eeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeee
Q 026815 134 GEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFF 209 (232)
Q Consensus 134 n~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f 209 (232)
-++.||-.-+.|+|..--|.|+|++|++.+++. ++ .+.+...+. +-+|+|..|.+.|.+.....|+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~-----~~---~~~l~~Gd~--~~i~~~~~H~~~n~~~~~~~~l 68 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD-----GE---RVELKPGDA--IYIPPGVPHQVRNPGDEPARFL 68 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEET-----TE---EEEEETTEE--EEEETTSEEEEEEESSSEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEc-----cE---EeEccCCEE--EEECCCCeEEEEECCCCCEEEE
Confidence 467899999999987666999999999888743 22 567776664 4689999999999997766655
No 12
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.09 E-value=0.002 Score=53.58 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=57.8
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeee
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFF 209 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f 209 (232)
++--=+++||-.=.-|+|+.+.|.++|++|.|.+.+. ++ ++.+..++. +.+|+|..|.|.|.| ....-|
T Consensus 64 ~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~-----~~---~~~~~~g~s--v~Ip~g~~H~i~n~g-~~~L~~ 132 (151)
T PF01050_consen 64 KVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD-----DE---EFTLKEGDS--VYIPRGAKHRIENPG-KTPLEI 132 (151)
T ss_pred EEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC-----CE---EEEEcCCCE--EEECCCCEEEEECCC-CcCcEE
Confidence 5566678999999999999999999999999999973 22 355655543 678999999999998 445556
Q ss_pred eccc
Q 026815 210 IGCQ 213 (232)
Q Consensus 210 ~gCq 213 (232)
+.=|
T Consensus 133 IEVq 136 (151)
T PF01050_consen 133 IEVQ 136 (151)
T ss_pred EEEe
Confidence 6544
No 13
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.09 E-value=0.0023 Score=60.44 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=57.5
Q ss_pred eeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCcccee
Q 026815 128 CVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHST 207 (232)
Q Consensus 128 cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~ 207 (232)
.-++..-+++||..-+.|+||...|.|+|++|++.+.+. ++ ++.+...+. +.+|+|..|.+.|.+.....
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d-----g~---~~~l~~GDs--i~ip~~~~H~~~N~g~~~~~ 444 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG-----DE---TLLLTENES--TYIPLGVIHRLENPGKIPLE 444 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC-----CE---EEEecCCCE--EEECCCCcEEEEcCCCCCEE
Confidence 446677789999988999999999999999999888754 22 455655554 45899999999999965544
Q ss_pred eeeccc
Q 026815 208 FFIGCQ 213 (232)
Q Consensus 208 ~f~gCq 213 (232)
++.||
T Consensus 445 -~i~v~ 449 (468)
T TIGR01479 445 -LIEVQ 449 (468)
T ss_pred -EEEEE
Confidence 44444
No 14
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=97.01 E-value=0.0044 Score=55.06 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=62.9
Q ss_pred eeecCCcccccccccccce--EEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccc-eeeee
Q 026815 134 GEIQPGALRGNHRHYTLNE--TFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIH-STFFI 210 (232)
Q Consensus 134 n~~kPGitRGNHwHhTKnE--kFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~-~~~f~ 210 (232)
-.+.||-.|=-|||---.| -+.|++|+|..-+.+.. .+ .+.+.+....+ +-+|++|-|.++|+|..- .+++.
T Consensus 85 ~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~-G~--~~v~~~~~Gd~--iyVPp~~gH~t~N~Gd~pLvf~~v 159 (209)
T COG2140 85 VFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPE-GE--ARVIAVRAGDV--IYVPPGYGHYTINTGDEPLVFLNV 159 (209)
T ss_pred EEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCC-Cc--EEEEEecCCcE--EEeCCCcceEeecCCCCCEEEEEE
Confidence 3567888888999999999 99999999999999887 44 67777755544 457999999999999666 66666
Q ss_pred ccccccc
Q 026815 211 GCQDGVI 217 (232)
Q Consensus 211 gCqD~~~ 217 (232)
=|-|...
T Consensus 160 ~~~~~~~ 166 (209)
T COG2140 160 YPADAGQ 166 (209)
T ss_pred EeCCCCc
Confidence 6766644
No 15
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=96.90 E-value=0.0044 Score=59.66 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=58.2
Q ss_pred eeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceee
Q 026815 129 VSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTF 208 (232)
Q Consensus 129 gQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~ 208 (232)
-++-.-++.||...+.|+||...|.++|++|++.+.+.+ + ++.+...+. +.+|+|..|.+.|.|.. ..=
T Consensus 385 ~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-----~---~~~L~~GDS--i~ip~g~~H~~~N~g~~-~l~ 453 (478)
T PRK15460 385 YQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-----D---IKLLGENES--IYIPLGATHCLENPGKI-PLD 453 (478)
T ss_pred EEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-----E---EEEecCCCE--EEECCCCcEEEEcCCCC-CEE
Confidence 355666899999989999999999999999988887642 2 456655543 46899999999999954 445
Q ss_pred eecccc
Q 026815 209 FIGCQD 214 (232)
Q Consensus 209 f~gCqD 214 (232)
++.||-
T Consensus 454 iI~V~~ 459 (478)
T PRK15460 454 LIEVRS 459 (478)
T ss_pred EEEEEc
Confidence 666663
No 16
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=96.77 E-value=0.0086 Score=52.85 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=60.9
Q ss_pred eeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCcccee
Q 026815 128 CVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHST 207 (232)
Q Consensus 128 cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~ 207 (232)
+-.+++-+++||..=|-|-||.--|...|++|+|.+++ + ++ +++|...++ +-||++..|.+.|+|.....
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~---~--g~---~~~V~~GD~--i~i~~~~~h~~~~~G~~~~~ 247 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL---D--NN---WVPVEAGDY--IWMGAYCPQACYAGGRGEFR 247 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE---C--CE---EEEecCCCE--EEECCCCCEEEEecCCCcEE
Confidence 45789999999999999999997789999999999966 2 22 567777765 57999999999999987777
Q ss_pred eee
Q 026815 208 FFI 210 (232)
Q Consensus 208 ~f~ 210 (232)
|++
T Consensus 248 ~l~ 250 (260)
T TIGR03214 248 YLL 250 (260)
T ss_pred EEE
Confidence 764
No 17
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.75 E-value=0.0065 Score=52.38 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=54.4
Q ss_pred eEEEeeecCCcccc-cccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCC--ceeeeeecCccce
Q 026815 130 SLHVGEIQPGALRG-NHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQG--TAHALVNADLIHS 206 (232)
Q Consensus 130 QvsVn~~kPGitRG-NHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~G--yTHnIiNlg~~~~ 206 (232)
-|.+.+.+||.--- -|||+++.|.|.|+.|++..++- =.|+.|...+.+ .-|.| .+|.++|-+.+-.
T Consensus 43 Gvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d--------~~e~~lrpGD~~--gFpAG~~~aHhliN~s~~~~ 112 (161)
T COG3837 43 GVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED--------GGETRLRPGDSA--GFPAGVGNAHHLINRSDVIL 112 (161)
T ss_pred ccceEEeCCCCccccccccccCceEEEEEcCceEEEEC--------CeeEEecCCcee--eccCCCcceeEEeecCCceE
Confidence 57888999997433 49999999999999998877651 246777766654 45666 9999999997766
Q ss_pred eeee
Q 026815 207 TFFI 210 (232)
Q Consensus 207 ~~f~ 210 (232)
-|+-
T Consensus 113 ~yL~ 116 (161)
T COG3837 113 RYLE 116 (161)
T ss_pred EEEE
Confidence 6653
No 18
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=96.40 E-value=0.023 Score=45.69 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=47.5
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEE-EeecCCCCcceEEEEEcCceEEEEecCCCceeeeeec
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFR-LENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNA 201 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iR-lR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNl 201 (232)
++...+++||...+.|+||. .|.-.|++|++.+. +.+ ++ ++.+...+. +.+|++..|.+.|.
T Consensus 36 ~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~----g~---~~~L~aGD~--i~~~~~~~H~~~N~ 98 (125)
T PRK13290 36 SFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT----GE---VHPIRPGTM--YALDKHDRHYLRAG 98 (125)
T ss_pred EEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC----CE---EEEeCCCeE--EEECCCCcEEEEcC
Confidence 44557899999999999976 69999999988776 422 12 466666654 45899999999997
No 19
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=96.30 E-value=0.023 Score=46.63 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=57.2
Q ss_pred eeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceee
Q 026815 129 VSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTF 208 (232)
Q Consensus 129 gQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~ 208 (232)
-++-+-+..||...+.+.||..-|.++|+.|+..+++. ++ +|.+...+.. .+|++..|.+.|.+.....+
T Consensus 107 ~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~-----~~---~~~l~~Gd~~--~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 107 LAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTIN-----GQ---DYHLVAGQSY--AINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred eEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEEC-----CE---EEEecCCCEE--EEcCCCCeeeeCCCCCCeEE
Confidence 35666778999988888888889999999999888763 12 4667666654 46889999999998776666
Q ss_pred eeccc
Q 026815 209 FIGCQ 213 (232)
Q Consensus 209 f~gCq 213 (232)
+.-|+
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 65554
No 20
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=96.02 E-value=0.043 Score=51.13 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=66.6
Q ss_pred cceeccCCccchhhhhhhhhhccCCCceeeeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEE
Q 026815 99 SLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEV 178 (232)
Q Consensus 99 l~m~~D~RGsftE~ikt~~~agl~gGa~~cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey 178 (232)
.++..++-||..+...... .+- +-...-.-.+.||..+.-|||. --|-++|+.|+..+++.+-+ .+ ...+
T Consensus 43 ~~~~~~~gG~~~~~~~~~l----P~l--~~ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~--g~-~~~~ 112 (367)
T TIGR03404 43 SHNRLENGGWAREVTVRDL----PIS--TAIAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN--GR-NYID 112 (367)
T ss_pred ccCccccCceEEEeChhhc----cCc--ccccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC--Cc-EEEe
Confidence 3444556677766554441 111 1123334467999999999995 47999999999999987543 22 2333
Q ss_pred EEcCceEEEEecCCCceeeeeecCccceeeeeccccc
Q 026815 179 IVGADEVAIAASPQGTAHALVNADLIHSTFFIGCQDG 215 (232)
Q Consensus 179 ~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~gCqD~ 215 (232)
.+...++-+ +|+|+.|.+.|.+ ....| +-|.|.
T Consensus 113 ~L~~GD~~~--fP~g~~H~~~n~~-~~~~~-l~vf~~ 145 (367)
T TIGR03404 113 DVGAGDLWY--FPPGIPHSLQGLD-EGCEF-LLVFDD 145 (367)
T ss_pred EECCCCEEE--ECCCCeEEEEECC-CCeEE-EEEeCC
Confidence 566666554 7999999999996 34444 444444
No 21
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.69 E-value=0.15 Score=39.46 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=58.5
Q ss_pred eeeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccce
Q 026815 127 SCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHS 206 (232)
Q Consensus 127 ~cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~ 206 (232)
.-.++..-+.+||..=.-|.|..-.+.++|++|++.++++ + .. +++...+ ++-+|+|.-|.+.|.+..-
T Consensus 41 ~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g-~~-----~~l~~Gd--~i~ip~g~~H~~~a~~~~~- 109 (131)
T COG1917 41 ENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--G-EK-----KELKAGD--VIIIPPGVVHGLKAVEDEP- 109 (131)
T ss_pred ceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec--C-Cc-----eEecCCC--EEEECCCCeeeeccCCCCc-
Confidence 3445666788999999999998667999999999999998 4 11 2233322 4467999999999998655
Q ss_pred eeeeccccc
Q 026815 207 TFFIGCQDG 215 (232)
Q Consensus 207 ~~f~gCqD~ 215 (232)
+.++-....
T Consensus 110 ~~~l~v~~~ 118 (131)
T COG1917 110 MVLLLVFPL 118 (131)
T ss_pred eeEEEEeee
Confidence 677766655
No 22
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=94.82 E-value=0.14 Score=44.62 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=42.9
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCc-ceEEEEEcCceEEEEecCCCceeeeeecCc
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDK-GYAEVIVGADEVAIAASPQGTAHALVNADL 203 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~de-g~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~ 203 (232)
.|-.-++-||---+-||| .|.|-|+|..|+|...+++....-. .--||.+..+.. ..||++-.|-+.|.+.
T Consensus 45 EVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnST--f~IPvn~~HQv~NT~e 116 (167)
T PF02041_consen 45 EVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNST--FHIPVNDAHQVWNTNE 116 (167)
T ss_dssp EEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEE--EEE-TT--EEEE---S
T ss_pred eEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCe--EEeCCCCcceeecCCC
Confidence 788889999999999997 7999999999999999995531111 156888887764 4689999999999993
No 23
>PRK11171 hypothetical protein; Provisional
Probab=94.09 E-value=0.43 Score=42.31 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=53.0
Q ss_pred eEEEeeecCCccccccccccc-ceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceee
Q 026815 130 SLHVGEIQPGALRGNHRHYTL-NETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTF 208 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTK-nEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~ 208 (232)
++.+-++.||..-+.|.||.. -|.+.|++|+..+++ + ++ ++.+...+. +.+|++..|.+.|.+.....+
T Consensus 62 ~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~--g~---~~~L~~GDs--i~~p~~~~H~~~N~g~~~a~~ 131 (266)
T PRK11171 62 SQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---E--GK---THALSEGGY--AYLPPGSDWTLRNAGAEDARF 131 (266)
T ss_pred EEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---C--CE---EEEECCCCE--EEECCCCCEEEEECCCCCEEE
Confidence 556668899998888998854 566789999888875 2 22 566666654 457999999999988655554
Q ss_pred eecc
Q 026815 209 FIGC 212 (232)
Q Consensus 209 f~gC 212 (232)
+.=+
T Consensus 132 l~v~ 135 (266)
T PRK11171 132 HWIR 135 (266)
T ss_pred EEEE
Confidence 4433
No 24
>PLN00212 glutelin; Provisional
Probab=92.87 E-value=0.46 Score=46.70 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=55.9
Q ss_pred eeeEEE--eeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeec
Q 026815 128 CVSLHV--GEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNA 201 (232)
Q Consensus 128 cgQvsV--n~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNl 201 (232)
-.++|+ ..+.||.+-.-|||-.-+|-.+|+.|.+.+++-+.. .. .|..=.|...++-| +|.|++|...--
T Consensus 345 ~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~-g~-~vf~~~L~~GdvfV--VPqg~~v~~~A~ 416 (493)
T PLN00212 345 LIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNN-GK-TVFNGVLRPGQLLI--IPQHYAVLKKAE 416 (493)
T ss_pred ccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCC-CC-EEEEEEEcCCCEEE--ECCCCeEEEeec
Confidence 345555 456799999999999999999999999999996533 12 38888898888776 799999986553
No 25
>PRK11171 hypothetical protein; Provisional
Probab=92.79 E-value=1.1 Score=39.87 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=56.2
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeee
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFF 209 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f 209 (232)
.+.+.+++||..=|-|-||.--|.+.|+.|++.+++ + ++ +|.|..++. +.++++..|.+.|.|.....|+
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~--~~---~~~l~~GD~--i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---N--ND---WVEVEAGDF--IWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---C--CE---EEEeCCCCE--EEECCCCCEEEECCCCCcEEEE
Confidence 788899999999998767777799999999998865 2 22 567776664 4689999999999987666665
Q ss_pred e
Q 026815 210 I 210 (232)
Q Consensus 210 ~ 210 (232)
+
T Consensus 255 ~ 255 (266)
T PRK11171 255 L 255 (266)
T ss_pred E
Confidence 3
No 26
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=92.06 E-value=0.94 Score=39.52 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=50.3
Q ss_pred eEEEeee-cCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecC
Q 026815 130 SLHVGEI-QPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNAD 202 (232)
Q Consensus 130 QvsVn~~-kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg 202 (232)
+.-|-+. -||-.++-|+|.+ .|.|.++.|...+++++-| + .-.+.+...++-+ +|+|.-|+...-.
T Consensus 34 d~~VmvvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d~g---~-~~~v~L~eGd~fl--lP~gvpHsP~r~~ 100 (177)
T PRK13264 34 DFIVMVVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQEDG---K-RRDVPIREGEMFL--LPPHVPHSPQREA 100 (177)
T ss_pred CEEEEEEccCCcccccccCCC-ceEEEEECCeEEEEEEcCC---c-eeeEEECCCCEEE--eCCCCCcCCccCC
Confidence 3444445 5888899999765 9999999999999999743 2 4467777776655 6999999987743
No 27
>PLN00212 glutelin; Provisional
Probab=87.41 E-value=3.7 Score=40.61 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred CCcccceeccCCccchhhhhhhhhhccCCCceeeeeEEEe--eecCCcccccccccccceEEEEEecceeEEEeecCCCC
Q 026815 95 DHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVG--EIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDD 172 (232)
Q Consensus 95 ~~ypl~m~~D~RGsftE~ikt~~~agl~gGa~~cgQvsVn--~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~d 172 (232)
++=|...-.-+-| ++|... . +.--+.|..|++. +|+|+.+-=-|+| ...|-.+|+.|+|.+=+-..|..+
T Consensus 51 a~ep~~ri~se~G-~~E~~~-~-----~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpe 122 (493)
T PLN00212 51 AFEPLRKVRSEAG-VTEYFD-E-----KNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPA 122 (493)
T ss_pred cCCCchhhcccCc-eeeecC-C-----CChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcc
Confidence 3445444344445 666655 2 2233567677664 6899999999999 667788899999998887655322
Q ss_pred cceE-----------------------EEEEc-CceEEEEecCCCceeeeeecCccceeeeeccccc
Q 026815 173 KGYA-----------------------EVIVG-ADEVAIAASPQGTAHALVNADLIHSTFFIGCQDG 215 (232)
Q Consensus 173 eg~~-----------------------Ey~Vs-gdev~Vv~~P~GyTHnIiNlg~~~~~~f~gCqD~ 215 (232)
. |- .+.+. || |+.+|+|.+|-+.|.|.. ....+...|.
T Consensus 123 T-~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GD---ViaiPaG~~hw~yN~Gd~-~~v~v~~~d~ 184 (493)
T PLN00212 123 T-YQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGD---VVALPAGVAHWFYNDGDA-PVVALYVYDI 184 (493)
T ss_pred h-hhhhcccccccccccccccccccccceEeccCC---EEEECCCCeEEEEeCCCC-cEEEEEEEec
Confidence 1 11 12333 33 567899999999999954 3444455565
No 28
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=86.69 E-value=3.8 Score=31.43 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=43.2
Q ss_pred CCccccccccccc---ceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCc
Q 026815 138 PGALRGNHRHYTL---NETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADL 203 (232)
Q Consensus 138 PGitRGNHwHhTK---nEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~ 203 (232)
|-..+ +.|+|| |.+..|+.|+-+|++-+-+ .++.--+..+..++..+ ++|.+-|.|+=++.
T Consensus 12 P~~l~--~~H~TK~GtWg~l~Vl~G~L~f~~~~~~-~~~~~~~~~~~~~~~~~--i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 12 PAALL--ERHNTKAGTWGKLRVLEGELKFYGLDEE-GEEPEEEVFIPAGQPPV--IEPQQWHRVEPLSD 75 (82)
T ss_dssp -GGGG--SSBCCSTTEEEEEEEEESEEEEEEESST-T-SESEEEEEETTEEEE--E-TT-EEEEEESST
T ss_pred cHHHH--hhcCCCCCeEEEEEEEeeEEEEEEECCC-CCceeEEEEeCCCCCce--eCCCceEEEEECCC
Confidence 44444 567888 6888999999999988876 33434566777777776 78999999998774
No 29
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=84.57 E-value=7.2 Score=33.54 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=46.1
Q ss_pred eEEEeee-cCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecC
Q 026815 130 SLHVGEI-QPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNAD 202 (232)
Q Consensus 130 QvsVn~~-kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg 202 (232)
|+-|-.. -||-..--|.|- -.|-|.|+.|...|+++.-+ + .-.+.+...++-+ +|+|..|+-.-..
T Consensus 28 ~~~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g---~-~~~v~L~eGd~fl--vP~gvpHsP~r~~ 94 (159)
T TIGR03037 28 EFMVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEG---K-REDVPIREGDIFL--LPPHVPHSPQRPA 94 (159)
T ss_pred cEEEEEeCCCCCCcccccCC-CceEEEEEcceEEEEEEcCC---c-EEEEEECCCCEEE--eCCCCCcccccCC
Confidence 3444333 244444456654 59999999999999988755 2 4567887777766 6999999987654
No 30
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=84.44 E-value=2.6 Score=36.99 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=49.8
Q ss_pred eecCCccccccccc-ccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecC
Q 026815 135 EIQPGALRGNHRHY-TLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNAD 202 (232)
Q Consensus 135 ~~kPGitRGNHwHh-TKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg 202 (232)
.+-|+..+-.|+|. -+||+|+|+.|+-.+.+=+-+ .++ ..+..++......+ +||+.=|.++-.+
T Consensus 17 ~~~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~-g~~-~~~~~l~~~~~~~~-i~p~~wh~v~~~s 82 (287)
T PRK12335 17 DTLPEMFQEKHNTKEGTWAKLTVLKGELKFYELTED-GEE-LSEHIFDAENQPPF-IEPQAWHRIEAAS 82 (287)
T ss_pred hhchHHHHhccCCCCCcceEEEEEeeeEEEEEECCC-CCe-eeEEEEecCCCCce-eCCcceEEEEEcC
Confidence 46688888899995 899999999999888887655 333 56666776653333 8999999998873
No 31
>PRK13502 transcriptional activator RhaR; Provisional
Probab=83.15 E-value=4.8 Score=34.20 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=49.5
Q ss_pred EEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeeee
Q 026815 131 LHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFFI 210 (232)
Q Consensus 131 vsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~ 210 (232)
+.+...-|.-.-..|||. ..|-.+|.+|.+.+.+.+ -+|.+..+++-+ +|+|-.|.+.-.+.....+++
T Consensus 20 ~~~~~~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~--------~~~~l~~g~l~l--i~~~~~H~~~~~~~~~~~~~~ 88 (282)
T PRK13502 20 VTVADRYPQDVFAEHTHE-FCELVMVWRGNGLHVLNE--------RPYRITRGDLFY--IRAEDKHSYTSVNDLVLQNII 88 (282)
T ss_pred eEEecCCCCCCCCccccc-eEEEEEEecCcEEEEECC--------EEEeecCCcEEE--ECCCCcccccccCCceEEEEE
Confidence 345666666655679996 899999999998877532 247788887776 599999998765543333344
Q ss_pred ccc
Q 026815 211 GCQ 213 (232)
Q Consensus 211 gCq 213 (232)
-|.
T Consensus 89 ~~~ 91 (282)
T PRK13502 89 YCP 91 (282)
T ss_pred ecc
Confidence 443
No 32
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=80.92 E-value=8.5 Score=32.73 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=39.3
Q ss_pred CcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeec
Q 026815 139 GALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNA 201 (232)
Q Consensus 139 GitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNl 201 (232)
+.....|||. ..|-++|..|.+.+.+. + -+|.+...++.+ +|||..|.+...
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~-----~---~~~~l~~g~l~~--i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEIN-----G---KRVLLERGDFVF--IPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEEC-----C---EEEEECCCcEEE--eCCCCccceeee
Confidence 4456789995 77999999998877652 2 257888888776 599999977543
No 33
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=80.59 E-value=11 Score=33.39 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=47.4
Q ss_pred eEEEeeecCCccccccccccc-ceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceee
Q 026815 130 SLHVGEIQPGALRGNHRHYTL-NETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTF 208 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTK-nEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~ 208 (232)
...+-++.||..--.+.||.. -|.+.|++|+..+.+. ++ ++.+...+- +.+|+|..|.+.|.+.....|
T Consensus 59 ~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~-----g~---~~~L~~Gd~--~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 59 VQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE-----GE---THELREGGY--AYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred EEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC-----CE---EEEECCCCE--EEECCCCCEEEEECCCCCEEE
Confidence 445667889764334555555 5677889997776532 22 345555543 457999999999998666555
Q ss_pred eecc
Q 026815 209 FIGC 212 (232)
Q Consensus 209 f~gC 212 (232)
+.=+
T Consensus 129 l~v~ 132 (260)
T TIGR03214 129 FLYK 132 (260)
T ss_pred EEEE
Confidence 4433
No 34
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=79.13 E-value=6.1 Score=37.21 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=52.7
Q ss_pred EEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeeeec
Q 026815 132 HVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFFIG 211 (232)
Q Consensus 132 sVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~g 211 (232)
.+..++||-+--.|||...- -+.|+.|+|.+-. ++ .+ .+.....++-+ .|+|+-|.-.|.+ -..++.+-
T Consensus 84 ~~q~l~pGe~~~~HRht~sA-l~~vveG~G~~t~--V~--g~---~~~~~~gD~~~--tP~w~wH~H~n~~-d~~~~wld 152 (335)
T TIGR02272 84 GLQLILPGEVAPSHRHTQSA-LRFIVEGKGAFTA--VD--GE---RTTMHPGDFII--TPSWTWHDHGNPG-DEPMIWLD 152 (335)
T ss_pred hhEEeCCCCCCCccccccce-EEEEEEcCceEEE--EC--CE---EEeeeCCCEEE--eCCCeeEecccCC-CCcEEEEe
Confidence 47889999999999997764 5556778775332 23 11 34444444444 4999999999987 56688888
Q ss_pred cccccc
Q 026815 212 CQDGVI 217 (232)
Q Consensus 212 CqD~~~ 217 (232)
|.|.++
T Consensus 153 ~lD~Pl 158 (335)
T TIGR02272 153 GLDIPL 158 (335)
T ss_pred cCCHHH
Confidence 888743
No 35
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=79.11 E-value=5.2 Score=37.67 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=51.4
Q ss_pred EeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeeeecc
Q 026815 133 VGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFFIGC 212 (232)
Q Consensus 133 Vn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~gC 212 (232)
+-.++||-+.-.|+| |+..-|.|+.|+|.-++ + ++ .+..+..++ +.+|.+..|.+.|.+ -+++..|
T Consensus 254 ~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g--~~---~~~W~~gD~--f~vPsW~~~~h~a~~---da~Lf~~ 319 (335)
T TIGR02272 254 IQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---G--DA---VFRFSPKDV--FVVPSWHPVRFEASD---DAVLFSF 319 (335)
T ss_pred HhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---C--CE---EEEecCCCE--EEECCCCcEecccCC---CeEEEEe
Confidence 346777777777776 55666999999998877 2 22 456666666 356999888888865 3678899
Q ss_pred ccccc
Q 026815 213 QDGVI 217 (232)
Q Consensus 213 qD~~~ 217 (232)
+|.|+
T Consensus 320 ~D~Pl 324 (335)
T TIGR02272 320 SDRPV 324 (335)
T ss_pred cCHHH
Confidence 99865
No 36
>PRK13500 transcriptional activator RhaR; Provisional
Probab=79.01 E-value=8.1 Score=34.14 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=46.2
Q ss_pred EEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCc
Q 026815 131 LHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADL 203 (232)
Q Consensus 131 vsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~ 203 (232)
|.|..--|.-.--.|||. ..|-++|++|.+.+.+.+- +|.+..+++.+ +++|..|.+...+.
T Consensus 50 ~~v~~~~~~~~~~~H~H~-~~el~~v~~G~g~~~v~~~--------~~~l~~Gdl~~--I~~~~~H~~~~~~~ 111 (312)
T PRK13500 50 VAVADRYPQDVFAEHTHD-FCELVIVWRGNGLHVLNDR--------PYRITRGDLFY--IHADDKHSYASVND 111 (312)
T ss_pred EEEecCCCCCCCCccccc-eEEEEEEEcCeEEEEECCE--------EEeecCCeEEE--ECCCCeecccccCC
Confidence 555555555444589986 7999999999999876433 47788888777 59999999886553
No 37
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=77.35 E-value=6.6 Score=33.25 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=37.9
Q ss_pred ccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCc
Q 026815 143 GNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADL 203 (232)
Q Consensus 143 GNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~ 203 (232)
--|||..--|-+++++|++.+...+ -+|.+..+++.+ +|||..|.+.....
T Consensus 37 ~~H~H~~~~~l~~~~~G~~~~~~~~--------~~~~l~~g~~~i--i~~~~~H~~~~~~~ 87 (287)
T TIGR02297 37 PVHFHDRYYQLHYLTEGSIALQLDE--------HEYSEYAPCFFL--TPPSVPHGFVTDLD 87 (287)
T ss_pred CCcccccceeEEEEeeCceEEEECC--------EEEEecCCeEEE--eCCCCccccccCCC
Confidence 3689866678899999988765522 257788887655 89999999876543
No 38
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=74.38 E-value=8.6 Score=32.50 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=34.9
Q ss_pred ccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeee
Q 026815 143 GNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALV 199 (232)
Q Consensus 143 GNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIi 199 (232)
..|.|. -.|--.|+.|.|.|=+|.-+ +.++.+.+...++-+ +|+|+.|-..
T Consensus 86 ~EH~H~-deEvR~i~~G~g~Fdvr~~~---~~wiri~~e~GDli~--vP~g~~HrF~ 136 (157)
T PF03079_consen 86 EEHTHE-DEEVRYIVDGSGYFDVRDGD---DVWIRILCEKGDLIV--VPAGTYHRFT 136 (157)
T ss_dssp S-EEES-S-EEEEEEECEEEEEEE-TT---CEEEEEEEETTCEEE--E-TT--EEEE
T ss_pred eeEecC-hheEEEEeCcEEEEEEEcCC---CEEEEEEEcCCCEEe--cCCCCceeEE
Confidence 467765 47777889999999999554 338888888777655 6999999875
No 39
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=73.90 E-value=11 Score=27.00 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=37.4
Q ss_pred cCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCc
Q 026815 137 QPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADL 203 (232)
Q Consensus 137 kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~ 203 (232)
.|+-.-..|||. .-|-.+|.+|++.++++ ++ +|.|...++.+ +|||..|...-.+.
T Consensus 11 ~~~~~~~~h~h~-~~~i~~v~~G~~~~~~~-----~~---~~~l~~g~~~l--i~p~~~H~~~~~~~ 66 (136)
T PF02311_consen 11 SPNFEFPPHWHD-FYEIIYVLSGEGTLHID-----GQ---EYPLKPGDLFL--IPPGQPHSYYPDSN 66 (136)
T ss_dssp STT-SEEEETT--SEEEEEEEEE-EEEEET-----TE---EEEE-TT-EEE--E-TTS-EEEEE-TT
T ss_pred CCCCccCCEECC-CEEEEEEeCCEEEEEEC-----CE---EEEEECCEEEE--ecCCccEEEecCCC
Confidence 456666778887 77889999999998553 22 58899998876 89999999998873
No 40
>PRK13501 transcriptional activator RhaR; Provisional
Probab=72.80 E-value=14 Score=31.89 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=40.7
Q ss_pred cCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecC
Q 026815 137 QPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNAD 202 (232)
Q Consensus 137 kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg 202 (232)
-+...-.-||| .-.|-.+|++|++.+.+.+ -.|.+..+++.+ ||||..|.+.-.+
T Consensus 26 ~~~~~~~~H~H-~~~ei~~i~~G~~~~~i~~--------~~~~l~~g~~~~--I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTH-QFCEIVIVWRGNGLHVLND--------HPYRITCGDVFY--IQAADHHSYESVH 80 (290)
T ss_pred CCCCCCccccc-cceeEEEEecCceEEEECC--------eeeeecCCeEEE--EcCCCcccccccC
Confidence 33333347998 5889999999999887522 257788887776 7999999987544
No 41
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=69.94 E-value=22 Score=27.36 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=36.2
Q ss_pred eecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEE-EEcCceEEEEecCCCceeeeeecCccc
Q 026815 135 EIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEV-IVGADEVAIAASPQGTAHALVNADLIH 205 (232)
Q Consensus 135 ~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey-~Vsgdev~Vv~~P~GyTHnIiNlg~~~ 205 (232)
++.||..|+.--=...--.|.|+.|+....+.+. +| .-.|+-.. +|+|-+-+|.|++-..
T Consensus 18 ~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~--------~f~v~~G~~F~---VP~gN~Y~i~N~~~~~ 78 (85)
T PF11699_consen 18 ELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET--------SFVVTKGGSFQ---VPRGNYYSIKNIGNEE 78 (85)
T ss_dssp EE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE--------EEEEETT-EEE---E-TT-EEEEEE-SSS-
T ss_pred EeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc--------EEEEeCCCEEE---ECCCCEEEEEECCCCc
Confidence 6789999986555555567999999777665321 23 33455444 4999999999998544
No 42
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=65.82 E-value=39 Score=29.05 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=57.2
Q ss_pred EEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeeee
Q 026815 131 LHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFFI 210 (232)
Q Consensus 131 vsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f~ 210 (232)
.++-+|-||-.-+-|-|-.----..|++|++..+.-+-- ++ .-...-|| ...+|+|.-|-=.|++.....-.|
T Consensus 48 ~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rL-E~---ha~~~pGD---f~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 48 MHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRL-EE---HAEVGPGD---FFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred EEEEeeCCCccccccccccccEEEEEEeceeeeeeccce-ee---eEEecCCC---eEEcCCCCCCcccccCCCCeEEEE
Confidence 456789999999999887766667799999888775543 11 11122344 346899999999999977777777
Q ss_pred ccccc
Q 026815 211 GCQDG 215 (232)
Q Consensus 211 gCqD~ 215 (232)
.-+|.
T Consensus 121 aRsDp 125 (142)
T COG4101 121 ARSDP 125 (142)
T ss_pred EccCC
Confidence 77774
No 43
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=63.28 E-value=24 Score=25.62 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=34.2
Q ss_pred eecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceee
Q 026815 135 EIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHA 197 (232)
Q Consensus 135 ~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHn 197 (232)
+..||.. .|+...+|.|+|+.|+..|... + .+ .+.+...++.+ +|+|++-.
T Consensus 13 ~~~pg~~---~~~~~~~E~~~vleG~v~it~~--~-G~----~~~~~aGD~~~--~p~G~~~~ 63 (74)
T PF05899_consen 13 ECTPGKF---PWPYPEDEFFYVLEGEVTITDE--D-GE----TVTFKAGDAFF--LPKGWTGT 63 (74)
T ss_dssp EEECEEE---EEEESSEEEEEEEEEEEEEEET--T-TE----EEEEETTEEEE--E-TTEEEE
T ss_pred EECCcee---EeeCCCCEEEEEEEeEEEEEEC--C-CC----EEEEcCCcEEE--ECCCCEEE
Confidence 4567753 4667779999999998888754 2 12 36666666554 78888643
No 44
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=62.88 E-value=22 Score=26.20 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=35.0
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeee
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVN 200 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiN 200 (232)
++.+=...||..=..|+|.- .|..+|+.|. |+.-+ . .| =.|| ++-.|+|..|...-
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~----~~d~~---~---~~-~~G~---~~~~p~g~~h~~~s 80 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPG-GEEILVLEGE----LSDGD---G---RY-GAGD---WLRLPPGSSHTPRS 80 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS--EEEEEEECE----EEETT---C---EE-ETTE---EEEE-TTEEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCC-cEEEEEEEEE----EEECC---c---cC-CCCe---EEEeCCCCccccCc
Confidence 67777778999999999755 5566678883 22211 1 12 2333 45679999999983
No 45
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=60.98 E-value=23 Score=31.58 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCceeeeeEEEeeecCCc------ccccccccccceEEEEEecceeEEEeecCCCCcceEEEEE-cCceEEEEecCCCce
Q 026815 123 GGAVSCVSLHVGEIQPGA------LRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIV-GADEVAIAASPQGTA 195 (232)
Q Consensus 123 gGa~~cgQvsVn~~kPGi------tRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~V-sgdev~Vv~~P~GyT 195 (232)
.|=..|--|+|+...|-- -.-.|. |+-.|-=.+|.|+|.|-++..+ +. +..+.+ .||= +.+|+|+-
T Consensus 63 ~Gyk~~Dvvsv~~~~pk~del~akF~~EH~-H~d~EvRy~vaG~GiF~v~~~d-~~--~~~i~c~~gDL---I~vP~gi~ 135 (181)
T COG1791 63 RGYKNRDVVSVSPSNPKLDELRAKFLQEHL-HTDDEVRYFVAGEGIFDVHSPD-GK--VYQIRCEKGDL---ISVPPGIY 135 (181)
T ss_pred hCCceeeEEEeCCCCccHHHHHHHHHHHhc-cCCceEEEEEecceEEEEECCC-Cc--EEEEEEccCCE---EecCCCce
Confidence 455678888888766642 123464 5667877789999999999988 33 444444 4554 35699999
Q ss_pred eeee
Q 026815 196 HALV 199 (232)
Q Consensus 196 HnIi 199 (232)
|--.
T Consensus 136 HwFt 139 (181)
T COG1791 136 HWFT 139 (181)
T ss_pred EEEE
Confidence 9653
No 46
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=49.67 E-value=20 Score=30.61 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=38.9
Q ss_pred CcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecC-----ccceeeeeccc
Q 026815 139 GALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNAD-----LIHSTFFIGCQ 213 (232)
Q Consensus 139 GitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg-----~~~~~~f~gCq 213 (232)
+..+=+.|||-| +.|.. .+|..++.++|....--.+- ..|.|..-| -..- -+-||+
T Consensus 79 ~~~~~~~Whh~C----~tW~s------------~~G~~~ly~dG~~~~~~~~~--~g~~i~~gG~~vlGQeQd-~~gG~f 139 (195)
T PF00354_consen 79 GPIRDGQWHHIC----VTWDS------------STGRWQLYVDGVRLSSTGLA--TGHSIPGGGTLVLGQEQD-SYGGGF 139 (195)
T ss_dssp ECS-TSS-EEEE----EEEET------------TTTEEEEEETTEEEEEEESS--TT--B-SSEEEEESS-BS-BTTBTC
T ss_pred cccCCCCcEEEE----EEEec------------CCcEEEEEECCEeccccccc--CCceECCCCEEEECcccc-ccCCCc
Confidence 345668999999 45655 25688899999854332332 335554322 1111 123455
Q ss_pred ccccCCCCCCCccccccc
Q 026815 214 DGVINNNASTSDFNVWKD 231 (232)
Q Consensus 214 D~~~n~n~s~tD~~vwkd 231 (232)
|....+.-.=+||++|..
T Consensus 140 d~~q~F~G~i~~~~iWd~ 157 (195)
T PF00354_consen 140 DESQAFVGEISDFNIWDR 157 (195)
T ss_dssp SGGGB--EEEEEEEEESS
T ss_pred CCccEeeEEEeceEEEee
Confidence 555555666789999974
No 47
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=47.78 E-value=68 Score=29.38 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=43.6
Q ss_pred EEeeecCCcccccccccccceEEEEEec-ceeEEEeecCC----CCcceEEEEEcCceEEE-------------EecCCC
Q 026815 132 HVGEIQPGALRGNHRHYTLNETFVIWGA-KTKFRLENNQI----DDKGYAEVIVGADEVAI-------------AASPQG 193 (232)
Q Consensus 132 sVn~~kPGitRGNHwHhTKnEkFiVv~G-~g~iRlR~i~~----~deg~~Ey~Vsgdev~V-------------v~~P~G 193 (232)
-+=++++|=+-=.|+|..|-|..|--|| .-.|+|-+.+. +.+.-+.+.++|.+-.| |.++||
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 3456788888889999999999999974 66699999862 22346777777766644 566777
Q ss_pred ceeeeeec
Q 026815 194 TAHALVNA 201 (232)
Q Consensus 194 yTHnIiNl 201 (232)
.=|.----
T Consensus 170 ~yH~Fw~e 177 (225)
T PF07385_consen 170 IYHWFWGE 177 (225)
T ss_dssp EEEEEEE-
T ss_pred CeeeEEec
Confidence 77765543
No 48
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=41.27 E-value=79 Score=28.07 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=45.7
Q ss_pred EEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccc
Q 026815 131 LHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIH 205 (232)
Q Consensus 131 vsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~ 205 (232)
+.+-+..|=..-.-|||. .-|-.+|..|.+.++.. | + ++.+..+++.+ +++|..|.+...+..+
T Consensus 28 ~~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~--g---~---~~~l~~Gd~il--i~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 28 LEIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLIN--N---E---KVQINQGHITL--FWACTPHQLTDPGNCR 91 (302)
T ss_pred eEEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEEC--C---E---EEEEcCCcEEE--EecCCcccccccCCCc
Confidence 556666776778889986 46888899998776653 2 2 57788887777 4889999876655443
No 49
>COG4037 Predicted membrane protein [Function unknown]
Probab=39.91 E-value=63 Score=28.22 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=57.0
Q ss_pred HHHHHHhhCCCchhHHHHHHHHH-HHHHhhhccCCCcccccccccccCCCCcccccccceeeecCCCcccc---------
Q 026815 31 SILLNFLKRPQAFPFLLSIFVLL-TWLSLRLQHSSSQFELNKNNHEKWSSTKDDDVKANLVRFKSDHLPSL--------- 100 (232)
Q Consensus 31 s~~~~flkrp~~fpflls~fl~l-~w~slr~~~~s~~~~~~~~~h~~~~~~~~~d~~anlvrf~~~~ypl~--------- 100 (232)
+-++|.|.||.+.|-+.++||-| +.++|-.-|+-. +. +.-+++.+.++..-+.-|.-|+-.=.||+
T Consensus 8 grilN~l~~Pe~~prvf~~~Lal~~l~Gll~ph~ln---p~-QLYPrP~Pq~Q~~~kdPLAPYDRGGvPLe~Pg~~ksQY 83 (163)
T COG4037 8 GRILNALRRPESMPRVFCLLLALLALLGLLCPHSLN---PE-QLYPRPAPQVQMKAKDPLAPYDRGGVPLESPGVTKSQY 83 (163)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHHHhhCccccC---HH-HcCCCCCchhhhccCCCCCCccCCCCccCCccchhhhC
Confidence 46889999999999999887643 344554444321 11 22234444444333444444554444543
Q ss_pred -eeccCCccchhhhhhhhhhccCCCceeeeeEEEeeecCCcc
Q 026815 101 -ILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGAL 141 (232)
Q Consensus 101 -m~~D~RGsftE~ikt~~~agl~gGa~~cgQvsVn~~kPGit 141 (232)
+-.-++||.|.-+.- ..--+++-..-||.--| +.||++
T Consensus 84 PQfEpnlGkiTaYLtP-ia~w~k~~t~yfGTtIv--S~PGGi 122 (163)
T COG4037 84 PQFEPNLGKITAYLTP-IARWLKHNTRYFGTTIV--SHPGGI 122 (163)
T ss_pred CccccccceeehhhhH-HHHHHhccCEEcccEEe--cCCChh
Confidence 335578987654321 12224666556665443 467763
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=37.73 E-value=1.4e+02 Score=28.65 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=54.4
Q ss_pred ccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceeee
Q 026815 145 HRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTFF 209 (232)
Q Consensus 145 HwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~f 209 (232)
=||++-+..|.+.+|.-.||+=.+- ..+..++++-.|+++-+.-+|+|-+=+..|-+ -+.+|+
T Consensus 71 ~w~~~~~d~~atas~dk~ir~wd~r-~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kd-D~it~i 133 (313)
T KOG1407|consen 71 CWDPKHPDLFATASGDKTIRIWDIR-SGKCTARIETKGENINITWSPDGEYIAVGNKD-DRITFI 133 (313)
T ss_pred eeCCCCCcceEEecCCceEEEEEec-cCcEEEEeeccCcceEEEEcCCCCEEEEecCc-ccEEEE
Confidence 3999999999999999999999998 44559999999999999999999998888877 344444
No 51
>PRK13503 transcriptional activator RhaS; Provisional
Probab=37.36 E-value=93 Score=26.15 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=35.0
Q ss_pred ccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecC
Q 026815 143 GNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNAD 202 (232)
Q Consensus 143 GNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg 202 (232)
..||| ...|-.+|.+|.+.+.+.+-. |.+..+.+.+ +|+|..|...+.+
T Consensus 29 ~~H~H-~~~ei~~v~~G~~~~~i~~~~--------~~l~~g~~~~--i~~~~~h~~~~~~ 77 (278)
T PRK13503 29 PEHHH-DFHEIVIVEHGTGIHVFNGQP--------YTLSGGTVCF--VRDHDRHLYEHTD 77 (278)
T ss_pred ccccc-CceeEEEEecCceeeEecCCc--------ccccCCcEEE--ECCCccchhhhcc
Confidence 47887 788999999999888765543 4455555544 6788888766544
No 52
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=33.11 E-value=1.6e+02 Score=27.13 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=49.1
Q ss_pred CccchhhhhhhhhhccCCCceeeeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceE
Q 026815 106 RGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEV 185 (232)
Q Consensus 106 RGsftE~ikt~~~agl~gGa~~cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev 185 (232)
+=.+.+.+-.. +|.-+.||=+-...+. -+||....|...|+.|+..+.+. | + +|.+...++
T Consensus 142 ~v~~~d~~~~~-----d~s~m~aGf~~~~~~s------f~wtl~~dEi~YVLEGe~~l~Id--G---~---t~~l~pGDv 202 (233)
T PRK15457 142 CVGLTDLVTGD-----DGSSMAAGFMQWENAF------FPWTLNYDEIDMVLEGELHVRHE--G---E---TMIAKAGDV 202 (233)
T ss_pred cEEeeeeeccC-----CCCceeeEEEEEecCc------cceeccceEEEEEEEeEEEEEEC--C---E---EEEeCCCcE
Confidence 33445555555 5554555555444221 35999999999999997777662 2 2 455555554
Q ss_pred EEEecCCCceeeeeecCccc
Q 026815 186 AIAASPQGTAHALVNADLIH 205 (232)
Q Consensus 186 ~Vv~~P~GyTHnIiNlg~~~ 205 (232)
. -+|+|..|.-.+-+..|
T Consensus 203 l--fIPkGs~~hf~tp~~aR 220 (233)
T PRK15457 203 M--FIPKGSSIEFGTPSSVR 220 (233)
T ss_pred E--EECCCCeEEecCCCCee
Confidence 4 58999996665544333
No 53
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=32.59 E-value=1.2e+02 Score=26.78 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=41.5
Q ss_pred CcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeee
Q 026815 139 GALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALV 199 (232)
Q Consensus 139 GitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIi 199 (232)
|+.-=-|||-.--|-.+|..|.+.+++--.+ =-|.+|...++-+ +|.|+-|.=-
T Consensus 53 ~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~-----G~el~v~~GDvll--iPAGvGH~rl 106 (163)
T COG4297 53 GVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD-----GQELEVGEGDVLL--IPAGVGHCRL 106 (163)
T ss_pred cccccccccCCcceEEEEecceeEEEecCCC-----CceeeecCCCEEE--EecCcccccc
Confidence 4455579999999999999999999987665 2456776666544 8999999743
No 54
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=30.32 E-value=82 Score=25.64 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=41.5
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecC---------------------C--CC-c--------ceEE
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQ---------------------I--DD-K--------GYAE 177 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~---------------------~--~d-e--------g~~E 177 (232)
+..+-+..+|..-.-|+..+-| -++++.|+=.+.|=-.. . .+ + ...+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~~n-~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPSHN-LLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SSEE-EEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECchhh-hhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 5567777888888888876544 56677777666552111 0 00 0 2577
Q ss_pred EEEcCceEEEEecCCCceeeeeec
Q 026815 178 VIVGADEVAIAASPQGTAHALVNA 201 (232)
Q Consensus 178 y~Vsgdev~Vv~~P~GyTHnIiNl 201 (232)
+.+...++ +-||+|+-|.++|+
T Consensus 211 ~~l~pGD~--LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 211 VVLEPGDV--LFIPPGWWHQVENL 232 (251)
T ss_dssp EEEETT-E--EEE-TT-EEEEEES
T ss_pred EEECCCeE--EEECCCCeEEEEEc
Confidence 77777765 45899999999999
No 55
>PLN02634 probable pectinesterase
Probab=29.83 E-value=4.4e+02 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHhhhccCC
Q 026815 43 FPFLLSIFVLLTWLSLRLQHSS 64 (232)
Q Consensus 43 fpflls~fl~l~w~slr~~~~s 64 (232)
||.-|-|||++--+..|+--..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (359)
T PLN02634 9 FALSLILFLSFHCLCFRFPLVA 30 (359)
T ss_pred HHHHHHHHHHHhhHhhcCCcce
Confidence 4555666666666666665544
No 56
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=29.54 E-value=46 Score=28.34 Aligned_cols=21 Identities=29% Similarity=0.730 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHhhhcc
Q 026815 42 AFPFLLSIFVLLTWLSLRLQH 62 (232)
Q Consensus 42 ~fpflls~fl~l~w~slr~~~ 62 (232)
+.=++|.+|++++|+=-||++
T Consensus 30 sL~~iL~lil~~~wl~kr~~~ 50 (137)
T COG3190 30 SLILILALILFLAWLVKRLGR 50 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445789999999999999995
No 57
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=26.22 E-value=1.1e+02 Score=30.40 Aligned_cols=55 Identities=35% Similarity=0.567 Sum_probs=36.6
Q ss_pred hccCCCceeeeeEEEe---eecCCcc--cccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCC
Q 026815 119 AGVKGGAVSCVSLHVG---EIQPGAL--RGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQG 193 (232)
Q Consensus 119 agl~gGa~~cgQvsVn---~~kPGit--RGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~G 193 (232)
-|+-||++..|-+.|+ +|+||+. ||+ .+.|+ .+- ++ +...+-++.+++- +-|-|
T Consensus 234 GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~---k~~~~--------------pi~-T~--i~Sl~ag~~~~~e-a~PGG 292 (415)
T COG5257 234 GGVIGGSLVQGVLRVGDEIEIRPGIVVEKGG---KTVWE--------------PIT-TE--IVSLQAGGEDVEE-ARPGG 292 (415)
T ss_pred CceecceeeeeeEecCCeEEecCCeEeecCC---ceEEE--------------Eee-EE--EEEEEeCCeeeee-ccCCc
Confidence 5789999999999998 7999983 444 34443 333 33 5666666666655 44544
Q ss_pred c
Q 026815 194 T 194 (232)
Q Consensus 194 y 194 (232)
.
T Consensus 293 L 293 (415)
T COG5257 293 L 293 (415)
T ss_pred e
Confidence 3
No 58
>TIGR03500 FliO_TIGR flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.
Probab=25.36 E-value=55 Score=23.28 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 026815 45 FLLSIFVLLTWLSLRLQH 62 (232)
Q Consensus 45 flls~fl~l~w~slr~~~ 62 (232)
++|.++++++|+.-|+..
T Consensus 3 ~vl~li~~~~~~~~r~~~ 20 (69)
T TIGR03500 3 LVLALIIALAWLLKRFGS 20 (69)
T ss_pred EhHHHHHHHHHHHHHhCc
Confidence 467888999999999985
No 59
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=25.22 E-value=84 Score=26.56 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred CcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCcc----ceeeeecccc
Q 026815 139 GALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLI----HSTFFIGCQD 214 (232)
Q Consensus 139 GitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~----~~~~f~gCqD 214 (232)
.-.+-+.|||-|. +|.+ ..|-+.++|+|.... .......|.|..-|.+ ......||+|
T Consensus 85 ~~~~~g~W~hvc~----tw~~------------~~g~~~lyvnG~~~~--~~~~~~g~~i~~~G~lvlGq~qd~~gg~f~ 146 (206)
T smart00159 85 VPESDGKWHHICT----TWES------------SSGIAELWVDGKPGV--RKGLAKGYTVKPGGSIILGQEQDSYGGGFD 146 (206)
T ss_pred ccccCCceEEEEE----EEEC------------CCCcEEEEECCEEcc--cccccCCcEECCCCEEEEEecccCCCCCCC
Confidence 3456678999986 4544 234678888887752 2222223333322200 0011234555
Q ss_pred cccCCCCCCCccccccc
Q 026815 215 GVINNNASTSDFNVWKD 231 (232)
Q Consensus 215 ~~~n~n~s~tD~~vwkd 231 (232)
....+.-.=+|+++|..
T Consensus 147 ~~~~f~G~i~~v~iw~~ 163 (206)
T smart00159 147 ATQSFVGEIGDLNMWDS 163 (206)
T ss_pred CCcceeEEEeeeEEecc
Confidence 54445556689999974
No 60
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=24.91 E-value=1.2e+02 Score=27.83 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=39.0
Q ss_pred eE-EEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecCccceee
Q 026815 130 SL-HVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNADLIHSTF 208 (232)
Q Consensus 130 Qv-sVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~~~~~~ 208 (232)
++ -.=...|+...|+=-+|.++|.-+|+.|+...+..+.. ++. . ...| ..+..|.+.+|.+. .+-...++
T Consensus 170 ~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~-~~~-~---L~~G---SYf~s~~~~~H~~~-~~e~~~vl 240 (251)
T PF14499_consen 170 QYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGAS-NFG-T---LDPG---SYFGSPGHITHGIF-ITEDECVL 240 (251)
T ss_dssp EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEE-TTE-E---EEE----TT-EE--E-------EESS-EEE
T ss_pred ceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccC-CCc-c---ccCC---cccccCCccccccc-ccCCCEEE
Confidence 55 56677899999999999999999999998888776654 221 1 1112 13467888899998 44466677
Q ss_pred eecc
Q 026815 209 FIGC 212 (232)
Q Consensus 209 f~gC 212 (232)
|+-+
T Consensus 241 yIRt 244 (251)
T PF14499_consen 241 YIRT 244 (251)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 61
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=23.01 E-value=61 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=18.4
Q ss_pred eEEEEEcCceEEEEecCCCceeeeeecCc
Q 026815 175 YAEVIVGADEVAIAASPQGTAHALVNADL 203 (232)
Q Consensus 175 ~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg~ 203 (232)
+..++....|..+ +|||+.|...|+|.
T Consensus 80 ~~~~~Q~~Ge~V~--i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 80 VYRFVQKPGEFVF--IPPGAYHQVFNLGD 106 (114)
T ss_dssp -EEEEEETT-EEE--E-TT-EEEEEESSS
T ss_pred cccceECCCCEEE--ECCCceEEEEeCCc
Confidence 6677777776655 79999999999983
No 62
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=22.57 E-value=2.9e+02 Score=19.65 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=31.2
Q ss_pred eEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCce
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTA 195 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyT 195 (232)
...+....+.-+--++||+- +++.-+ . .++..|++++......+.+..
T Consensus 40 ~~~~~~~~~~~~~dg~wh~v--------------~i~~~~---~-~~~l~Vd~~~~~~~~~~~~~~ 87 (128)
T PF02210_consen 40 SEIVTTFSNSNLNDGQWHKV--------------SISRDG---N-RVTLTVDGQSVSSESLPSSSS 87 (128)
T ss_dssp SEEEEEECSSSSTSSSEEEE--------------EEEEET---T-EEEEEETTSEEEEEESSSTTH
T ss_pred cceeeeccCccccccceeEE--------------EEEEee---e-eEEEEecCccceEEeccccce
Confidence 45555555666666778873 233333 2 588889999988877776653
No 63
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=22.12 E-value=3.1e+02 Score=23.49 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=38.1
Q ss_pred eeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceeeeeecC
Q 026815 128 CVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHALVNAD 202 (232)
Q Consensus 128 cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHnIiNlg 202 (232)
|-.+.+. +|...+| .+-.++++|++.+. ++ + -+|.+..+++- -+|||..|......
T Consensus 36 ~~d~~~~--r~~~~~~-------~~i~~~~~G~~~~~---~~--~---~~~~~~~g~~i--~i~p~~~h~~~~~~ 91 (290)
T PRK10572 36 YLDFFID--RPLGMKG-------YILNLTIRGQGVIF---NG--G---RAFVCRPGDLL--LFPPGEIHHYGRHP 91 (290)
T ss_pred ccceeee--cCCCccc-------eEEEEEEeccEEEe---cC--C---eeEecCCCCEE--EECCCCceeeccCC
Confidence 5555665 7888887 35567899988874 23 2 25677777554 48999999876643
No 64
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=22.02 E-value=66 Score=21.91 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHH
Q 026815 41 QAFPFLLSIFVLL 53 (232)
Q Consensus 41 ~~fpflls~fl~l 53 (232)
..||.+.++|||.
T Consensus 6 ~GFPi~va~yLL~ 18 (38)
T PF12841_consen 6 VGFPIAVAIYLLV 18 (38)
T ss_pred cCcHHHHHHHHHH
Confidence 3699999998874
No 65
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=21.57 E-value=1.3e+02 Score=24.83 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=29.3
Q ss_pred EecceeEEEeecCCCCcceEEEEEcCceEEEEecCCCceee
Q 026815 157 WGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAHA 197 (232)
Q Consensus 157 v~G~g~iRlR~i~~~deg~~Ey~Vsgdev~Vv~~P~GyTHn 197 (232)
=.|+-.+|++|.+.+..--..|.++|+++.....|.|-|.-
T Consensus 42 ~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k 82 (111)
T TIGR03066 42 KDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKK 82 (111)
T ss_pred CCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCcccc
Confidence 35777777777664233367888899988887788887765
No 66
>PRK11056 hypothetical protein; Provisional
Probab=21.17 E-value=78 Score=26.64 Aligned_cols=20 Identities=35% Similarity=0.908 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHhhhccC
Q 026815 43 FPFLLSIFVLLTWLSLRLQHS 63 (232)
Q Consensus 43 fpflls~fl~l~w~slr~~~~ 63 (232)
||.++++ +|+.||+.|+-.-
T Consensus 95 ~p~il~~-~L~~Wi~~kl~~~ 114 (120)
T PRK11056 95 FPAVLSV-ILVFWIGRKLRNR 114 (120)
T ss_pred HHHHHHH-HHHHHHHHHHhcc
Confidence 7888888 8899999998653
No 67
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=20.48 E-value=5.2e+02 Score=23.53 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=48.2
Q ss_pred eEEEeeecCCcccccccccccceEEEE-EecceeEEEeecCC-------------CC--cceEEEEEcCceEEEEecCCC
Q 026815 130 SLHVGEIQPGALRGNHRHYTLNETFVI-WGAKTKFRLENNQI-------------DD--KGYAEVIVGADEVAIAASPQG 193 (232)
Q Consensus 130 QvsVn~~kPGitRGNHwHhTKnEkFiV-v~G~g~iRlR~i~~-------------~d--eg~~Ey~Vsgdev~Vv~~P~G 193 (232)
++++=.+.|| .+|-=.|..-.+.||| +.|+=.-|+-+... .+ +.+.|+.+...++ ..+|+|
T Consensus 115 ~~n~Y~tp~g-~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~--LYlPrG 191 (319)
T PF08007_consen 115 GANAYLTPPG-SQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDV--LYLPRG 191 (319)
T ss_dssp EEEEEEETSS-BEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-E--EEE-TT
T ss_pred ceEEEecCCC-CCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCE--EEECCC
Confidence 4555555554 5688888888899987 66777777766210 01 3477888887775 458999
Q ss_pred ceeeeeecCccceeeeeccc
Q 026815 194 TAHALVNADLIHSTFFIGCQ 213 (232)
Q Consensus 194 yTHnIiNlg~~~~~~f~gCq 213 (232)
+.|.-+..+ ....+=+|.+
T Consensus 192 ~~H~~~~~~-~S~hltv~~~ 210 (319)
T PF08007_consen 192 WWHQAVTTD-PSLHLTVGFR 210 (319)
T ss_dssp -EEEEEESS--EEEEEEEEC
T ss_pred ccCCCCCCC-CceEEEEeee
Confidence 999999998 4444445544
No 68
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.19 E-value=2e+02 Score=28.05 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=60.0
Q ss_pred ccCCccchhhhhhhhhhccCCCceeeeeEEEeeecCCcccccccccccceEEEEEecceeEEEeecCCCCcceEEEEEcC
Q 026815 103 KDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGA 182 (232)
Q Consensus 103 ~D~RGsftE~ikt~~~agl~gGa~~cgQvsVn~~kPGitRGNHwHhTKnEkFiVv~G~g~iRlR~i~~~deg~~Ey~Vsg 182 (232)
.+.|.+.|.-+=++ +--|.||.+-=.|+|...-=.| |+.|+|.+-.-+-+ + -++=.|
T Consensus 82 l~g~ssiT~TLyAg----------------lQlilPGEvApsHrHsqsAlRF-vveG~Ga~T~VdGe---r---~~M~~G 138 (351)
T COG3435 82 LRGRSSITPTLYAG----------------LQLILPGEVAPSHRHNQSALRF-VVEGKGAYTVVDGE---R---TPMEAG 138 (351)
T ss_pred CCCcccccHHHHhh----------------hheecCcccCCcccccccceEE-EEeccceeEeecCc---e---eeccCC
Confidence 45556677766666 3458999999999999988888 46777766543322 1 122334
Q ss_pred ceEEEEecCCCceeeeeecCccceeeeeccccccc
Q 026815 183 DEVAIAASPQGTAHALVNADLIHSTFFIGCQDGVI 217 (232)
Q Consensus 183 dev~Vv~~P~GyTHnIiNlg~~~~~~f~gCqD~~~ 217 (232)
|- +--|.|.=|-=-|.| .-++..+-|-|-+.
T Consensus 139 Df---ilTP~w~wHdHgn~g-~eP~iWlDgLDipl 169 (351)
T COG3435 139 DF---ILTPAWTWHDHGNEG-TEPCIWLDGLDIPL 169 (351)
T ss_pred CE---EEccCceeccCCCCC-CCceEEEcccchHH
Confidence 43 346999999999998 55666667777654
No 69
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.02 E-value=86 Score=26.30 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHhhhcc
Q 026815 43 FPFLLSIFVLLTWLSLRLQH 62 (232)
Q Consensus 43 fpflls~fl~l~w~slr~~~ 62 (232)
||.++++ +|+.||+.|+-.
T Consensus 95 fp~il~l-~L~~Wi~~kl~~ 113 (117)
T PF07226_consen 95 FPSILCL-ILVFWIGYKLGF 113 (117)
T ss_pred HHHHHHH-HHHHHHHHHHhh
Confidence 7888888 889999998754
Done!