BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026816
MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL
RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN
SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI
GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS

High Scoring Gene Products

Symbol, full name Information P value
AT4G16510 protein from Arabidopsis thaliana 9.4e-82
DDB_G0268796 gene from Dictyostelium discoideum 6.8e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026816
        (232 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2130749 - symbol:AT4G16510 "AT4G16510" species...   820  9.4e-82   1
DICTYBASE|DDB_G0268796 - symbol:DDB_G0268796 species:4468...   274  6.8e-24   1


>TAIR|locus:2130749 [details] [associations]
            symbol:AT4G16510 "AT4G16510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND]
            InterPro:IPR007214 Pfam:PF04073 EMBL:CP002687 GO:GO:0004812
            Gene3D:3.90.960.10 SUPFAM:SSF55826 EMBL:AY054597 EMBL:AY072519
            IPI:IPI00549043 RefSeq:NP_567502.1 UniGene:At.26459
            ProteinModelPortal:Q940I4 PRIDE:Q940I4 EnsemblPlants:AT4G16510.1
            GeneID:827349 KEGG:ath:AT4G16510 TAIR:At4g16510
            HOGENOM:HOG000239325 InParanoid:Q940I4 OMA:PDFFWLG PhylomeDB:Q940I4
            ProtClustDB:CLSN2689461 Genevestigator:Q940I4 Uniprot:Q940I4
        Length = 232

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 163/232 (70%), Positives = 184/232 (79%)

Query:     1 MEAALAELERVQTEILPRISKLEQTILXXXXXXXXXXXXXXXXTPHTTIRDTEARLSNIL 60
             ME A AELER+Q EIL +IS LE + L                 P     +T  RLS IL
Sbjct:     7 METAAAELERLQIEILHKISILESSFLPQNSSAAPSPSL-----P-VDENETVTRLSTIL 60

Query:    61 RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
             +S GVNDF FK+V +DYYDWPLESRRDVL A+ + HLCKSIVLVNTQA S+++DCSD NN
Sbjct:    61 QSGGVNDFCFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPNN 120

Query:   121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
             SKYYVVVVQYTARFNAEAVK FLY+LN GKIPKK+FNLRLAPEETS+ LTG+EHN VTCI
Sbjct:   121 SKYYVVVVQYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTCI 180

Query:   181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
             GMKT+IPVILDEAITKL PDFFWLGGGE DLK G++TSEF++FVKPFIV CS
Sbjct:   181 GMKTNIPVILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLEFVKPFIVPCS 232


>DICTYBASE|DDB_G0268796 [details] [associations]
            symbol:DDB_G0268796 species:44689 "Dictyostelium
            discoideum" [GO:0006450 "regulation of translational fidelity"
            evidence=IEA] [GO:0002161 "aminoacyl-tRNA editing activity"
            evidence=IEA] InterPro:IPR007214 Pfam:PF04073
            dictyBase:DDB_G0268796 EMBL:AAFI02000004 Gene3D:3.90.960.10
            SUPFAM:SSF55826 RefSeq:XP_646972.1 ProteinModelPortal:Q55EP8
            EnsemblProtists:DDB0190044 GeneID:8616664 KEGG:ddi:DDB_G0268796
            eggNOG:NOG69395 InParanoid:Q55EP8 OMA:ESAKKFH
            ProtClustDB:CLSZ2729337 Uniprot:Q55EP8
        Length = 230

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 63/178 (35%), Positives = 99/178 (55%)

Query:    44 TPHTTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVL 103
             TP + I D + R+  +    G+ + +  +VPS YY W L+ R   L A    +L KSI+L
Sbjct:    28 TPPSIITDNQKRIGKVCEEIGL-EHELVRVPSPYYTWTLDQRASYLDAFSPEYLLKSIIL 86

Query:   104 VNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPE 163
              NT+  ++  D S   NS+YY V++QYT +  +  +  F+  +N+ +   KKF+  LA  
Sbjct:    87 ENTECTNT--DTSIPTNSRYYCVIIQYTTKIQSHKIFKFIKNMNSNE-SAKKFHFTLA-- 141

Query:   164 ETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDF-FWLGGGETDLKWGIKTSEF 220
             +++ +LTG+E+NAV  IG    IP+I+ + I  L      +LGGGE DLK  +    F
Sbjct:   142 QSAESLTGFEYNAVCPIGTTVKIPIIISKHIMDLPRGVPVFLGGGEVDLKLVVDIHSF 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       216   0.00088  112 3  11 22  0.37    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.77u 0.16s 16.93t   Elapsed:  00:00:01
  Total cpu time:  16.77u 0.16s 16.93t   Elapsed:  00:00:01
  Start:  Sat May 11 06:39:19 2013   End:  Sat May 11 06:39:20 2013

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