BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026816
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KIB|A Chain A, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
 pdb|1KIB|B Chain B, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
 pdb|1KIB|C Chain C, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
 pdb|1KIB|D Chain D, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
 pdb|1KIB|E Chain E, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
 pdb|1KIB|F Chain F, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
 pdb|1KIB|G Chain G, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
 pdb|1KIB|H Chain H, Cytochrome C6 From Arthrospira Maxima: An Assembly Of 24
           Subunits In The Form Of An Oblate Shell
          Length = 89

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 127 VVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEE 164
           + +Y   F+ +AV    Y + NGK     FN RL+P++
Sbjct: 36  LAKYLKGFDDDAVAAVAYQVTNGKNAMPGFNGRLSPKQ 73


>pdb|2P90|A Chain A, The Crystal Structure Of A Protein Of Unknown Function
           From Corynebacterium Glutamicum Atcc 13032
 pdb|2P90|B Chain B, The Crystal Structure Of A Protein Of Unknown Function
           From Corynebacterium Glutamicum Atcc 13032
 pdb|2P90|C Chain C, The Crystal Structure Of A Protein Of Unknown Function
           From Corynebacterium Glutamicum Atcc 13032
          Length = 319

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 173 EHNAVTCIG-MKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIV 229
           EHN VT +  +   + V+ D      +  F  L G E DL+WG  ++  +  V+ F V
Sbjct: 79  EHNEVTSMDELNLGLHVVRDND----NKPFLMLSGPEPDLRWGDFSNAVVDLVEKFGV 132


>pdb|2CX5|A Chain A, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2CX5|B Chain B, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2CX5|C Chain C, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2CX5|D Chain D, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2Z0K|A Chain A, Crystal Structure Of Prox-Alasa Complex From T.
           Thermophilus
 pdb|2Z0X|A Chain A, Crystal Structure Of Prox-cyssa Complex From T.
           Thermophilus
          Length = 158

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 158 LRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGG 207
           LR A  E    LTG+    V  +G  T +P  LDE +  L     W  GG
Sbjct: 84  LRQATPEEVRELTGFAIGGVPPVGHNTPLPAYLDEDL--LGYPEVWAAGG 131


>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
           Complex With Glutamate
 pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
           Complex
          Length = 284

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 116 SDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKI 151
           ++RN    Y  + QY  RFN   V++ L +L  GK+
Sbjct: 172 TERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKL 207


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,179,049
Number of Sequences: 62578
Number of extensions: 225524
Number of successful extensions: 568
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)