Query 026816
Match_columns 232
No_of_seqs 135 out of 1141
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 13:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10670 hypothetical protein; 100.0 1.1E-31 2.4E-36 223.4 17.4 152 55-232 3-156 (159)
2 COG2606 EbsC Uncharacterized c 100.0 2.6E-31 5.7E-36 220.8 15.0 148 57-231 5-152 (155)
3 TIGR00011 YbaK_EbsC ybaK/ebsC 100.0 9.8E-31 2.1E-35 214.6 18.0 151 55-232 2-152 (152)
4 cd04336 YeaK YeaK is an unchar 100.0 1.5E-30 3.2E-35 213.0 18.7 152 54-232 2-153 (153)
5 cd04939 PA2301 PA2301 is an un 100.0 6.6E-30 1.4E-34 208.9 16.0 126 81-229 13-139 (139)
6 cd04333 ProX_deacylase This CD 100.0 1.6E-29 3.4E-34 206.5 17.9 147 54-231 2-148 (148)
7 cd04335 PrdX_deacylase This CD 100.0 6.4E-29 1.4E-33 204.6 15.5 143 54-226 2-148 (156)
8 cd00002 YbaK_deacylase This CD 100.0 2.6E-28 5.5E-33 200.4 17.6 150 55-231 3-152 (152)
9 PF04073 tRNA_edit: Aminoacyl- 99.9 1.1E-26 2.3E-31 183.9 13.8 119 79-223 4-123 (123)
10 cd04332 YbaK_like YbaK-like. 99.9 9.5E-24 2.1E-28 167.9 15.2 133 68-228 2-135 (136)
11 cd04334 ProRS-INS INS is an am 99.9 2.2E-21 4.8E-26 160.5 12.4 133 67-230 26-159 (160)
12 COG3760 Uncharacterized conser 99.8 7.7E-18 1.7E-22 138.0 11.4 153 50-232 2-163 (164)
13 PRK09194 prolyl-tRNA synthetas 99.6 7.5E-15 1.6E-19 143.5 11.0 115 69-213 251-365 (565)
14 TIGR00409 proS_fam_II prolyl-t 98.5 4.3E-07 9.2E-12 89.5 10.1 110 79-211 259-368 (568)
15 PF13986 DUF4224: Domain of un 49.6 12 0.00026 25.1 1.6 15 160-174 2-16 (47)
16 TIGR01616 nitro_assoc nitrogen 29.5 1.2E+02 0.0026 24.1 4.9 37 51-90 12-48 (126)
17 COG2894 MinD Septum formation 29.4 4.4E+02 0.0095 24.0 9.3 139 22-194 70-232 (272)
18 cd02977 ArsC_family Arsenate R 27.5 1.4E+02 0.003 22.3 4.7 24 51-75 10-33 (105)
19 cd03032 ArsC_Spx Arsenate Redu 27.3 1.5E+02 0.0033 22.7 4.9 23 51-74 11-33 (115)
20 COG0695 GrxC Glutaredoxin and 27.2 1.6E+02 0.0036 21.2 4.9 25 51-76 12-36 (80)
21 cd03035 ArsC_Yffb Arsenate Red 26.0 1.7E+02 0.0037 22.3 5.0 37 51-90 10-46 (105)
22 PF00462 Glutaredoxin: Glutare 25.7 1.3E+02 0.0029 19.8 3.9 25 51-76 10-34 (60)
23 cd03036 ArsC_like Arsenate Red 25.6 1.4E+02 0.0029 22.9 4.4 25 50-75 9-33 (111)
24 PRK01655 spxA transcriptional 24.0 1.6E+02 0.0034 23.4 4.6 24 51-75 11-34 (131)
25 PF14451 Ub-Mut7C: Mut7-C ubiq 23.7 3E+02 0.0066 20.3 5.7 50 79-135 32-81 (81)
26 cd03033 ArsC_15kD Arsenate Red 23.5 1.8E+02 0.0039 22.6 4.7 36 51-89 11-46 (113)
27 TIGR02194 GlrX_NrdH Glutaredox 23.4 2.4E+02 0.0053 19.3 5.0 25 51-76 10-34 (72)
28 PF06649 DUF1161: Protein of u 23.4 1.4E+02 0.003 20.7 3.5 27 51-77 3-29 (52)
29 TIGR02181 GRX_bact Glutaredoxi 23.2 2.4E+02 0.0051 19.5 5.0 25 51-76 10-34 (79)
30 cd03034 ArsC_ArsC Arsenate Red 23.1 2.1E+02 0.0045 22.0 5.0 40 51-91 10-50 (112)
31 cd03041 GST_N_2GST_N GST_N fam 23.1 1.3E+02 0.0029 20.9 3.7 24 51-75 11-34 (77)
32 PRK10853 putative reductase; P 22.5 1.9E+02 0.0041 22.7 4.7 22 51-73 11-32 (118)
33 cd03028 GRX_PICOT_like Glutare 22.1 3.2E+02 0.0069 19.8 5.9 26 50-76 23-48 (90)
34 cd03029 GRX_hybridPRX5 Glutare 21.6 1.6E+02 0.0034 20.2 3.7 25 51-76 12-36 (72)
35 cd03054 GST_N_Metaxin GST_N fa 21.3 1.6E+02 0.0034 20.0 3.7 27 48-75 14-40 (72)
36 TIGR02190 GlrX-dom Glutaredoxi 21.2 1.3E+02 0.0029 21.2 3.3 25 51-76 19-43 (79)
37 PRK12559 transcriptional regul 21.1 2.3E+02 0.0049 22.6 5.0 37 51-90 11-47 (131)
38 PRK13344 spxA transcriptional 21.0 2.4E+02 0.0053 22.5 5.1 23 51-74 11-33 (132)
39 PRK10026 arsenate reductase; P 20.9 2.1E+02 0.0047 23.4 4.8 40 51-91 13-53 (141)
40 TIGR00014 arsC arsenate reduct 20.3 2.5E+02 0.0054 21.6 5.0 40 51-91 10-50 (114)
No 1
>PRK10670 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=223.40 Aligned_cols=152 Identities=14% Similarity=0.255 Sum_probs=133.9
Q ss_pred HHHHHHHHCCCCceeE--EEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCC
Q 026816 55 RLSNILRSNGVNDFQF--KKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTA 132 (232)
Q Consensus 55 rv~~~L~~~gi~~~~~--~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~ 132 (232)
...++|++++| +|++ ..|+... +.+.+++|+.+|++ +++++|||+++.+. ...+|+++|+++++
T Consensus 3 ~~~~~L~~~~i-~y~~~~~~h~~~~-~~~~~~~a~~lgv~-~~~i~Ktlv~~~~~-----------~~~~~vl~v~~gd~ 68 (159)
T PRK10670 3 PAVKLLEKNKI-SFTLHTYEHDPAE-TNFGDEVVRKLGLN-ADQVYKTLLVAVNG-----------DMKHLAVAVTPVAG 68 (159)
T ss_pred HHHHHHHHCCC-CeEEEeeccCCcc-cchHHHHHHHhCCC-HHHeEEEEEEEecC-----------CCceEEEEEEECCc
Confidence 46789999999 9998 5566554 34578889999998 99999999998532 11249999999999
Q ss_pred ccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCce
Q 026816 133 RFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLK 212 (232)
Q Consensus 133 rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~ 212 (232)
++|++|+++.++. + +++||++|++.++|||++|+|||||++.++|+|+|+++.++ +.+|++||.++..
T Consensus 69 ~ld~~kl~~~lg~--------~--~~~~a~~eev~~~tG~~~G~v~P~Gl~~~v~v~vD~~l~~~--~~i~~~aG~~~~~ 136 (159)
T PRK10670 69 QLDLKKVAKALGA--------K--KVEMADPMVAQRSTGYLVGGISPLGQKKRLPTVIDAPAQEF--ATIYVSGGKRGLD 136 (159)
T ss_pred eeCHHHHHHHhCC--------C--CcccCCHHHHHHhhCCccceECccCCCCCCeEEEehHHhcC--CEEEEcCCCCCcE
Confidence 9999999998743 3 38999999999999999999999999999999999999976 8999999999999
Q ss_pred EeeCHHHHHhhhCCeEeecC
Q 026816 213 WGIKTSEFIKFVKPFIVGCS 232 (232)
Q Consensus 213 l~is~~dl~~l~~~~v~di~ 232 (232)
+.|+++||.++++|.++||+
T Consensus 137 ~~i~~~dl~~l~~~~~~di~ 156 (159)
T PRK10670 137 IELAAGDLAKLLDAKFADIA 156 (159)
T ss_pred EEECHHHHHHHhCCEEEEEE
Confidence 99999999999999999985
No 2
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.6e-31 Score=220.76 Aligned_cols=148 Identities=19% Similarity=0.278 Sum_probs=128.1
Q ss_pred HHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCH
Q 026816 57 SNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNA 136 (232)
Q Consensus 57 ~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~ 136 (232)
.+.|+.+++ .|++.....+-...+.+++|+.+|++ +++++|||++++++ .+++++|+|+++++|+
T Consensus 5 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~aae~~g~~-~~~i~KTLvl~~~~-------------~~~~~~V~p~~~~Ldl 69 (155)
T COG2606 5 VRLLDKAKI-AFEVHVYELDPSALTGAEAAEALGVD-PAQVAKTLVLAVDK-------------GGPALAVVPGDQRLDL 69 (155)
T ss_pred HHHHHHhcC-CCceeEEEecCCcccHHHHHHHhCCC-HHHeeEEEEEEcCC-------------CCEEEEEEeCcCccCH
Confidence 345666776 55554444444456688999999997 99999999999752 5899999999999999
Q ss_pred HHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeC
Q 026816 137 EAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIK 216 (232)
Q Consensus 137 kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is 216 (232)
||+++.+| .|+ ..|+++++++++|||++|||||||+++++|+|+|++++++ +.||++||.++.+|+|+
T Consensus 70 kkla~~~G--------~kk--~~ma~~~~v~~~TGy~vGGv~P~G~~~~~p~~iD~s~~~~--~~I~~~aG~rg~~v~la 137 (155)
T COG2606 70 KKLAKALG--------AKK--AEMADPEEVQRLTGYVVGGVSPFGQKKRLPTYIDESALRF--DTIYVSAGKRGLLVELA 137 (155)
T ss_pred HHHHHHhC--------Ccc--cccCCHHHHHHHhCCcccCcCCCCcCCCCCEEEehhhhcC--CeEEecCCCcCceEEEC
Confidence 99999864 454 7899999999999999999999999999999999999987 99999999999999999
Q ss_pred HHHHHhhhCCeEeec
Q 026816 217 TSEFIKFVKPFIVGC 231 (232)
Q Consensus 217 ~~dl~~l~~~~v~di 231 (232)
++||.+++++.++++
T Consensus 138 p~dl~~l~~~~~a~~ 152 (155)
T COG2606 138 PQDLAELLGAAFADI 152 (155)
T ss_pred HHHHHHhhcchhhhh
Confidence 999999999877665
No 3
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=99.97 E-value=9.8e-31 Score=214.56 Aligned_cols=151 Identities=17% Similarity=0.304 Sum_probs=137.2
Q ss_pred HHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCcc
Q 026816 55 RLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARF 134 (232)
Q Consensus 55 rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rl 134 (232)
.+.++|+++|| +|++.+|++.-...|.++.|+.+|++ +++++|||++++++ ++|+++++|+++++
T Consensus 2 ~~~~~L~~~~i-~~~~~~~~~~~~~~t~~e~a~~~g~~-~~~~~Ktlv~~~~~-------------~~~~lv~~~gd~~l 66 (152)
T TIGR00011 2 NAIRLLDKAKI-EYEVHEYEVDPDHLDGESAAEKLGVD-PHRVFKTLVAEGDK-------------KGPVVAVIPGDEEL 66 (152)
T ss_pred HHHHHHHHcCC-CcEEEEecCCCCcccHHHHHHHhCCC-HHHeEEEEEEEcCC-------------CcEEEEEEECCcee
Confidence 47899999999 99999999764335888999999997 99999999999642 36999999999999
Q ss_pred CHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEe
Q 026816 135 NAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWG 214 (232)
Q Consensus 135 d~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~ 214 (232)
|++|++++++. + +++||+++++.+++||.+|+|+|||+..++|+|+|+++.+. +.+|+++|+.+..+.
T Consensus 67 d~~kl~~~lg~--------~--~~~~a~~ee~~~~~g~~~G~v~P~g~~~~~~vivD~~l~~~--~~~~~~~g~~~~~~~ 134 (152)
T TIGR00011 67 DLKKLAKASGG--------K--KAEMADPKDAEKVTGYIRGGISPIGQKKKFPTYIDESAKQL--ETIYVSGGKRGLQIE 134 (152)
T ss_pred CHHHHHHHhCC--------C--CcccCCHHHHHHhcCCcccccCCCCcCCCccEEEehHHhcC--CEEEEecCCCCcEEE
Confidence 99999998642 3 38999999999999999999999999999999999999986 789999999999999
Q ss_pred eCHHHHHhhhCCeEeecC
Q 026816 215 IKTSEFIKFVKPFIVGCS 232 (232)
Q Consensus 215 is~~dl~~l~~~~v~di~ 232 (232)
|+++||.++++|.|+|||
T Consensus 135 i~~~dl~~~~~~~~~~i~ 152 (152)
T TIGR00011 135 LAPDDLIRLLDGTFADIA 152 (152)
T ss_pred ECHHHHHHHhCCEEEecC
Confidence 999999999999999986
No 4
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=99.97 E-value=1.5e-30 Score=213.04 Aligned_cols=152 Identities=19% Similarity=0.323 Sum_probs=137.5
Q ss_pred HHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816 54 ARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR 133 (232)
Q Consensus 54 ~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r 133 (232)
++|.++|+++|| +|+...||+. .|.+++++.+|++ +++++||+++++++. .++||++++|++++
T Consensus 2 ~~v~~~L~~~~i-~y~~~~~~~~---~t~~~~a~~~~~~-~~~~~Ktll~~~~~~-----------~~~~vlvv~~~~~~ 65 (153)
T cd04336 2 ERLQELLNTNGA-RFRVLDHPPE---GTSEEVAAIRGTE-LGQGAKALLCKVKDG-----------SRRFVLAVLPADKK 65 (153)
T ss_pred HHHHHHHHHCCC-CEEEEecCCC---CCHHHHHHHhCCC-cccceEEEEEEecCC-----------CceEEEEEEeCccc
Confidence 689999999999 9999999874 5888999999997 999999999997420 02699999999999
Q ss_pred cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816 134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW 213 (232)
Q Consensus 134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l 213 (232)
+|++|+++.++ .++ +++|+++++.++|||++|+|+|||+..++|+|+|+++.+. .+.||+++|+.+.++
T Consensus 66 v~~~kl~~~~g--------~~~--l~~a~~~~l~~~~g~~~G~v~P~gl~~~v~~~iD~~l~~~-~~~v~~~~G~~~~~l 134 (153)
T cd04336 66 LDLKAVAAAVG--------GKK--ADLASPEEAEELTGCVIGAVPPFSFDPKLKLIADPSLLDR-GDEIAFNAGRLDASV 134 (153)
T ss_pred cCHHHHHHHhC--------CCc--cccCCHHHHHHHhCCccccCCCCCCCCCceEEEChHHhcc-CCEEEEcCCCCCcEE
Confidence 99999999864 333 8999999999999999999999999999999999999982 389999999999999
Q ss_pred eeCHHHHHhhhCCeEeecC
Q 026816 214 GIKTSEFIKFVKPFIVGCS 232 (232)
Q Consensus 214 ~is~~dl~~l~~~~v~di~ 232 (232)
.|+++||.++++|++++||
T Consensus 135 ~i~~~dl~~~~~~~~~~~~ 153 (153)
T cd04336 135 VLDTADYLRIARPLVLQFT 153 (153)
T ss_pred EECHHHHHHHhCCEEeccC
Confidence 9999999999999999997
No 5
>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=99.97 E-value=6.6e-30 Score=208.93 Aligned_cols=126 Identities=21% Similarity=0.317 Sum_probs=110.2
Q ss_pred cHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHH-HHHHhhhccCCCCCCcccccc
Q 026816 81 PLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEA-VKNFLYTLNNGKIPKKKFNLR 159 (232)
Q Consensus 81 tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kk-l~~~l~~l~~~~lg~k~~~lr 159 (232)
.-.++|+.+|++ ++|++|||+++.++. ...+|+++|+|+++|+|++| +++.+ |.|+ ++
T Consensus 13 ~~~~~A~~lG~~-~~~i~KTLv~~~~~~----------~~~~~~v~vv~gd~~ldlkk~~~~~~--------g~kk--~~ 71 (139)
T cd04939 13 DTAAFCARYGFG-LEDSANCVVVAGKRG----------GEERYAACVVLATTRADVNGVVKRRL--------GARK--AS 71 (139)
T ss_pred cHHHHHHHhCCC-HHHeEEEEEEEeecC----------CCccEEEEEEECccccCHHHHHHHHh--------CCCC--cc
Confidence 345567799998 999999999986421 11369999999999999875 66775 4343 89
Q ss_pred cCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhhhCCeEe
Q 026816 160 LAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIV 229 (232)
Q Consensus 160 lA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l~~~~v~ 229 (232)
|+++++++++|||.+|||||||+++++|+|+|++++++ +.||++||+++..++|+++||++++++.|+
T Consensus 72 ma~~~ev~~~TGy~~GGvsP~G~~~~~pv~iD~sl~~~--~~v~~saG~~~~~~~l~p~~L~~~~~a~v~ 139 (139)
T cd04939 72 FAPMETAVELTGMEYGGITPVGLPAGWPILVDSAVAER--PAVVIGSGVRRSKLLLPGAALAELPGAEVL 139 (139)
T ss_pred cCCHHHHHHhhCCCCccCCcCCcCCCCCEEEehHHhcC--CEEEECCCCCCcEEEECHHHHHHHhCCEEC
Confidence 99999999999999999999999999999999999987 999999999999999999999999999874
No 6
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=99.97 E-value=1.6e-29 Score=206.54 Aligned_cols=147 Identities=22% Similarity=0.383 Sum_probs=135.9
Q ss_pred HHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816 54 ARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR 133 (232)
Q Consensus 54 ~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r 133 (232)
+++.++|+++++ .|++.+||.. ..|.+++++.+|.+ .++++||++++++ ++++++++|++++
T Consensus 2 ~~~~~~L~~~~i-~~~~~~~~~~--~~t~~e~a~~~~~~-~~~~~K~l~~~~~--------------~~~~~v~~~~~~~ 63 (148)
T cd04333 2 ERVRAFLAARGL-DLEVIELPES--TRTAALAAEALGCE-PGQIAKSLVFRVD--------------DEPVLVVTSGDAR 63 (148)
T ss_pred HHHHHHHHHCCC-CCeEEECCCC--cchHHHHHHHcCCC-hhHEEEEEEEEEC--------------CcEEEEEEeCCcc
Confidence 689999999999 8999999964 45889999999997 8999999999863 3689999999999
Q ss_pred cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816 134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW 213 (232)
Q Consensus 134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l 213 (232)
+|++|+++.++ . +++||+++++.++|||++|+|+|||+..++|+|+|+++.+. +.+|++||+.+..+
T Consensus 64 ld~~kl~~~lg--------~---~l~~a~~~~~~~~~g~~~G~v~P~gl~~~v~v~vD~~l~~~--~~i~~~~g~~~~~~ 130 (148)
T cd04333 64 VDNKKFKALFG--------E---KLKMADAEEVRELTGFAIGGVCPFGHPEPLPVYLDESLKRF--DEVWAAAGTPNAAF 130 (148)
T ss_pred cCHHHHHHHhC--------C---CceeCCHHHHHHHHCCCCCcCCCCCCCCCCeEEEehhHhhC--CeEEEcCCCCCcEE
Confidence 99999999863 3 38999999999999999999999999989999999999986 89999999999999
Q ss_pred eeCHHHHHhhhCCeEeec
Q 026816 214 GIKTSEFIKFVKPFIVGC 231 (232)
Q Consensus 214 ~is~~dl~~l~~~~v~di 231 (232)
.|+++||.++++|.++||
T Consensus 131 ~i~~~dl~~~~~~~~~~i 148 (148)
T cd04333 131 RLTPDELERLTGAEWVDV 148 (148)
T ss_pred EECHHHHHHHhCCeEecC
Confidence 999999999999999986
No 7
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=99.96 E-value=6.4e-29 Score=204.60 Aligned_cols=143 Identities=20% Similarity=0.308 Sum_probs=130.3
Q ss_pred HHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816 54 ARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR 133 (232)
Q Consensus 54 ~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r 133 (232)
+++.++|+++|+ .|+...||+ ..|++++|+.+|++ +++++|||++++++ ++++++++|++++
T Consensus 2 ~~~~~~L~~~~i-~~~~~~~~~---~~t~e~~a~~~~~~-~~~~~Ktlv~~~~~-------------~~~vlv~~~gd~~ 63 (156)
T cd04335 2 DELLALLDELGI-AYETVEHPP---VFTVEEADEVLGEL-PGAHTKNLFLKDKK-------------GRLYLVTALHDKK 63 (156)
T ss_pred hHHHHHHHHCCC-ceEEEecCC---cCCHHHHHHhhccC-CCceEEEEEEEcCC-------------CCEEEEEEcCCcc
Confidence 689999999999 999999986 46889999999997 99999999998632 3699999999999
Q ss_pred cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCccc----CccEEEchhhhccCCCeEEEccCCC
Q 026816 134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKT----DIPVILDEAITKLSPDFFWLGGGET 209 (232)
Q Consensus 134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~----~ipviiD~~l~~l~~~~v~~ggG~~ 209 (232)
+|++++++.++. + +++||++|++.++|||++|+|+|||+.. ++|+|+|+++... +.+|++||++
T Consensus 64 vn~~kl~~~lg~--------~--~l~~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~--~~v~~~~G~~ 131 (156)
T cd04335 64 VDLKALSKQLGA--------S--RLSFASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEE--ERVGFHPLTN 131 (156)
T ss_pred cCHHHHHHHhCC--------C--CcccCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcC--CeEEEeCCCC
Confidence 999999998743 3 3999999999999999999999999964 7999999999986 8999999999
Q ss_pred CceEeeCHHHHHhhhCC
Q 026816 210 DLKWGIKTSEFIKFVKP 226 (232)
Q Consensus 210 ~~~l~is~~dl~~l~~~ 226 (232)
+..+.|+++||.+++++
T Consensus 132 ~~~~~i~~~dl~~~~~~ 148 (156)
T cd04335 132 TATVGISTEDLLKFLEA 148 (156)
T ss_pred ceEEEEcHHHHHHHHHH
Confidence 99999999999999875
No 8
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=99.96 E-value=2.6e-28 Score=200.42 Aligned_cols=150 Identities=17% Similarity=0.304 Sum_probs=135.9
Q ss_pred HHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCcc
Q 026816 55 RLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARF 134 (232)
Q Consensus 55 rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rl 134 (232)
.+.++|+++|| .|++.+|++.-...+.++.++.+|++ +.+++|+|++++++ ++++++++|+++++
T Consensus 3 ~~~~~L~~~~i-~~~~~~h~~~~~~~t~~e~~~~~~~~-~~~~~K~li~~~d~-------------~~~vlv~~~gd~~l 67 (152)
T cd00002 3 PAIRLLDKAKI-PYELHEYEHDEDASDGLEAAEKLGLD-PEQVFKTLVVEGDK-------------KGLVVAVVPVDEEL 67 (152)
T ss_pred HHHHHHHHcCC-CeEEEeecCCCCcCCHHHHHHHhCCC-HHHeEEEEEEEcCC-------------CcEEEEEEECCcee
Confidence 47889999999 99999998764445888889999997 89999999999742 46999999999999
Q ss_pred CHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEe
Q 026816 135 NAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWG 214 (232)
Q Consensus 135 d~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~ 214 (232)
|+++++++++. + ++++|+++++.+++|+++|+|+|||+..++|+++|.++.+. +.+|+++|+.+..+.
T Consensus 68 d~~kl~~~lg~--------~--~l~~a~~ee~~~~~g~~~G~v~P~~l~~~v~~liD~~l~~~--~~~~~~ag~~~~~l~ 135 (152)
T cd00002 68 DLKKLAKALGA--------K--KVEMAPPKDAERLTGYIRGGISPLGQKKRLPTVIDESALDL--DTIYVSAGKRGLQIE 135 (152)
T ss_pred CHHHHHHHhCC--------C--CcccCCHHHHHHhcCCcccccCccCcCCCccEEEehHHhcC--CEEEEeCCCCCcEEE
Confidence 99999998743 3 38999999999999999999999999888999999999985 799999999999999
Q ss_pred eCHHHHHhhhCCeEeec
Q 026816 215 IKTSEFIKFVKPFIVGC 231 (232)
Q Consensus 215 is~~dl~~l~~~~v~di 231 (232)
|+++||.++++|+|+||
T Consensus 136 i~~~~l~~~~~~~~~~~ 152 (152)
T cd00002 136 LAPQDLAKLTGAKFADI 152 (152)
T ss_pred ECHHHHHHHhCCEEecC
Confidence 99999999999999986
No 9
>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....
Probab=99.94 E-value=1.1e-26 Score=183.86 Aligned_cols=119 Identities=27% Similarity=0.466 Sum_probs=106.2
Q ss_pred CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhccCCCCCCccccc
Q 026816 79 DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNL 158 (232)
Q Consensus 79 ~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~~~~lg~k~~~l 158 (232)
..|++++|+.+|++ +++++|||++++.+ ++|+++++++++++|++|+++.++. + ++
T Consensus 4 ~~t~~~~a~~~~~~-~~~~~Ktlv~~~~~-------------~~~~lv~~~~d~~ld~~kl~~~~g~--------~--~l 59 (123)
T PF04073_consen 4 TRTIEDAAKALGVP-PEQIVKTLVLKDKK-------------GRPVLVVLPGDHRLDLKKLAKALGA--------R--RL 59 (123)
T ss_dssp TSSHHHHHHHHTCS-GGGEEEEEEEEETT-------------TEEEEEEEETTSEB-HHHHHHHHT---------S--SE
T ss_pred CCcHHHHHHHcCCC-HHHEEEEEEEEECC-------------CCEEEEEECCCCEecHHHHhccccc--------c--ch
Confidence 46899999999998 99999999999743 5799999999999999999999853 3 49
Q ss_pred ccCCHhhHhhhhCCCCCcccCCCc-ccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhh
Q 026816 159 RLAPEETSMNLTGYEHNAVTCIGM-KTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKF 223 (232)
Q Consensus 159 rlA~~ee~~~lTGy~~GgVsPfG~-~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l 223 (232)
+||++|++.++|||.+|+|||||+ ..++|+|+|+++++. +.+|+++|+.+..+.++++||.++
T Consensus 60 ~~a~~e~~~~~~g~~~G~v~P~g~~~~~~~vvvD~~l~~~--~~v~~~~g~~~~~l~~~~~dl~~l 123 (123)
T PF04073_consen 60 RLASPEELEELTGYEPGGVSPFGLPPKGVPVVVDESLLEL--DNVYFGAGEPGSHLEISNEDLRKL 123 (123)
T ss_dssp EE-HHHHHHHHHSSTTTS--SSGGGSTTEEEEEEGGGGGS--SEEEEECSSTTEEEEEEHHHHHHH
T ss_pred hhccHHHhhhccCCCcceecccccccCccEEEEEHHHcCC--CcEEEeCCCCCeEEEEChHHhccC
Confidence 999999999999999999999999 899999999999997 799999999999999999999875
No 10
>cd04332 YbaK_like YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).
Probab=99.91 E-value=9.5e-24 Score=167.89 Aligned_cols=133 Identities=23% Similarity=0.391 Sum_probs=117.7
Q ss_pred eeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhcc
Q 026816 68 FQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLN 147 (232)
Q Consensus 68 ~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~ 147 (232)
|....|++. ..|.++++..+|.+ .++++|++++++++ ++++++++|+++++|++++++.++
T Consensus 2 ~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~K~l~l~~~~-------------~~~v~v~~~~d~~~d~~~l~~~~g--- 62 (136)
T cd04332 2 YLEYEHTPG--AKTIEEAAEALGVP-PGQIAKTLVLKDDK-------------GGLVLVVVPGDHELDLKKLAKALG--- 62 (136)
T ss_pred cEEEecCCC--CCCHHHHHHHcCCC-HHHeEEEEEEEcCC-------------CcEEEEEEecccccCHHHHHHHhC---
Confidence 445555554 26889999999997 89999999999752 379999999999999999999864
Q ss_pred CCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhhhC-C
Q 026816 148 NGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVK-P 226 (232)
Q Consensus 148 ~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l~~-~ 226 (232)
.+ +++||+++++.+++||.+|+|+|||+..++|+|+|+++.+. +.+|+++|+.+..+.|+.+||.+.++ |
T Consensus 63 -----~~--~l~~a~~~~~~~~~g~~~G~v~P~~~~~~v~~~iD~~l~~~--~~~~~~~g~~~~~~~i~~~~l~~~~~~~ 133 (136)
T cd04332 63 -----AK--KLRLASEEELEELTGCEPGGVGPFGLKKGVPVVVDESLLEL--EDVYVGAGERGADLHLSPADLLRLLGEA 133 (136)
T ss_pred -----CC--CeeeCCHHHHHHHhCCCcCccCccccCCCCcEEEehHHhhC--CeEEEcCCCcCcEEEECHHHHHHHhccc
Confidence 34 39999999999999999999999999999999999999986 89999999999999999999999998 6
Q ss_pred eE
Q 026816 227 FI 228 (232)
Q Consensus 227 ~v 228 (232)
.+
T Consensus 134 ~~ 135 (136)
T cd04332 134 EV 135 (136)
T ss_pred cc
Confidence 54
No 11
>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.
Probab=99.86 E-value=2.2e-21 Score=160.48 Aligned_cols=133 Identities=20% Similarity=0.335 Sum_probs=110.4
Q ss_pred ceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhc
Q 026816 67 DFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTL 146 (232)
Q Consensus 67 ~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l 146 (232)
.|+.+.||.. .|.+++|..+|++ .++++|||+++.++ +++|+|+++|+++++|++++++.++.
T Consensus 26 ~~~~v~hp~~---~t~~~~a~~~~~~-~~~~~K~l~~~~~~------------~~~~~l~~~~~d~~vd~~kl~~~~g~- 88 (160)
T cd04334 26 ELEKVATPGQ---KTIEELAEFLGVP-PSQTVKTLLVKADG------------EEELVAVLLRGDHELNEVKLENLLGA- 88 (160)
T ss_pred CCeEEcCcCC---CCHHHHHHHhCcC-HHHeEEEEEEEECC------------CCCEEEEEecCCchhCHHHHHHhcCC-
Confidence 7888999885 5888999999997 99999999998642 13699999999999999999998643
Q ss_pred cCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhhhC-
Q 026816 147 NNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVK- 225 (232)
Q Consensus 147 ~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l~~- 225 (232)
+ +++||+++++.++|||++|+|+|||+. ++|+|+|+++.+. +.+++|+|..+.-+ +... +-+.+.
T Consensus 89 -------~--~l~~a~~eel~~~~g~~~G~v~P~gl~-~v~~~iD~~l~~~--~~~~~ga~~~~~~~-~~~~-~~~d~~~ 154 (160)
T cd04334 89 -------A--PLELASEEEIEAATGAPPGFIGPVGLK-KIPIIADRSVADL--KNFVCGANEDDYHY-VNVN-WGRDFPL 154 (160)
T ss_pred -------C--cceeCCHHHHHHhhCCCCCEECCcCCC-CCeEEEehHHhcC--CCEEEcCCCCCcEE-ECCc-cCccCCC
Confidence 3 399999999999999999999999998 9999999999986 67889999988655 4443 554443
Q ss_pred CeEee
Q 026816 226 PFIVG 230 (232)
Q Consensus 226 ~~v~d 230 (232)
+.+.|
T Consensus 155 ~~~~d 159 (160)
T cd04334 155 PEVAD 159 (160)
T ss_pred Cceee
Confidence 33444
No 12
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=7.7e-18 Score=137.98 Aligned_cols=153 Identities=21% Similarity=0.344 Sum_probs=125.5
Q ss_pred ChHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEe
Q 026816 50 RDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQ 129 (232)
Q Consensus 50 ~~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~ 129 (232)
..+.+.+.++|+++|| ++..++||+.| |+++. .+++..-++.-.|+|+++|+| ++|||+.+-
T Consensus 2 ~kt~~el~~lL~eLgI-~~~tveHppv~---tveEs-~~~~~eipgghtKnLfLkdkK-------------~q~~lv~~~ 63 (164)
T COG3760 2 MKTEAELFALLDELGI-DHTTVEHPPVF---TVEES-QALRDEIPGGHTKNLFLKDKK-------------DQFFLVTVD 63 (164)
T ss_pred CCCHHHHHHHHHHhCC-CcccccCCCce---ehHHH-HHHHhhcCCCccceeEeecCC-------------CCEEEEEec
Confidence 3567889999999999 99999999987 55563 444445578899999999986 589999999
Q ss_pred cCCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcc----cCccEEEchhhhccCCCeEEEc
Q 026816 130 YTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMK----TDIPVILDEAITKLSPDFFWLG 205 (232)
Q Consensus 130 ~~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~----~~ipviiD~~l~~l~~~~v~~g 205 (232)
..+.+|++++.+.+|+ +| ++|.++|.+++..|..+|+||+||.. +++.+|+|+.+++. +.|=+=
T Consensus 64 e~~~vDLk~ih~~IG~--------~R--lsFg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~--~~infH 131 (164)
T COG3760 64 EDAVVDLKSIHETIGA--------AR--LSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDD--DLINFH 131 (164)
T ss_pred ccceecHHHHHHHhce--------ee--eecCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhc--cccccc
Confidence 9999999999998755 53 89999999999999999999999985 45999999999973 444333
Q ss_pred cCCCCceEeeCHHHHHhhhC-----CeEeecC
Q 026816 206 GGETDLKWGIKTSEFIKFVK-----PFIVGCS 232 (232)
Q Consensus 206 gG~~~~~l~is~~dl~~l~~-----~~v~di~ 232 (232)
.=.-+....++.+|+++++. |+|+|++
T Consensus 132 Pl~N~aTt~ia~~dl~~fL~atGhep~il~~~ 163 (164)
T COG3760 132 PLSNTATTSIASADLIRFLEATGHEPRILDVS 163 (164)
T ss_pred cCCCccceeehHHHHHHHHHHcCCCceeeecc
Confidence 33345678889999998874 7777764
No 13
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.58 E-value=7.5e-15 Score=143.49 Aligned_cols=115 Identities=21% Similarity=0.343 Sum_probs=99.5
Q ss_pred eEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhccC
Q 026816 69 QFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNN 148 (232)
Q Consensus 69 ~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~~ 148 (232)
+.+.||.. .|.++.|..+|++ +++++||||+++. ++|+++++|+++++|++|+++.++.
T Consensus 251 ~~v~~p~~---~t~~e~a~~lg~~-~~~~~KtLi~~~~--------------~~~~lvvvp~d~~vn~~kl~~~lg~--- 309 (565)
T PRK09194 251 EKVDTPNA---KTIEELAEFLNVP-AEKTVKTLLVKAD--------------GELVAVLVRGDHELNEVKLENLLGA--- 309 (565)
T ss_pred eeecCCCC---CcHHHHHHHhCCC-HHHeeEEEEEEeC--------------CeEEEEEeecchhhhHHHHHhhcCC---
Confidence 45566664 5788899999997 9999999999853 3799999999999999999998643
Q ss_pred CCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816 149 GKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW 213 (232)
Q Consensus 149 ~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l 213 (232)
+ ++++|+++++.++|||+.|+|+|||+..++|+|+|+++... +.++.|||..+.-+
T Consensus 310 -----~--~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~sl~~~--~~~~~gan~~g~h~ 365 (565)
T PRK09194 310 -----A--PLELATEEEIRAALGAVPGFLGPVGLPKDVPIIADRSVADM--SNFVVGANEDDYHY 365 (565)
T ss_pred -----c--ccccCCHHHHHHhhCCCCCccCcccCCCCceEEEecccccc--ccccccCCCCCcee
Confidence 3 38999999999999999999999999999999999999985 67777888887655
No 14
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.53 E-value=4.3e-07 Score=89.51 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=91.5
Q ss_pred CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhccCCCCCCccccc
Q 026816 79 DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNL 158 (232)
Q Consensus 79 ~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~~~~lg~k~~~l 158 (232)
..|.++.+..++++ +.+.+||+++...+ .+.+++++++++++.||..|+++.++. .. .+
T Consensus 259 ~~ti~~~~~~~~~~-~~~~~k~~~~~~~~-----------~~~~~v~v~~rgd~~vn~~k~~~~~g~-------~~--~~ 317 (568)
T TIGR00409 259 TKTIAELVECFNLP-AEKVVKTLLVKAVD-----------KSEPLVALLVRGDHELNEVKAPNLLLV-------AQ--VL 317 (568)
T ss_pred CCcHHHHHHHhCCC-HhHeeeEEEEEecC-----------CccceEEEEecCcchhhHHHHHHHhcc-------Cc--cc
Confidence 46889999999997 99999999997421 123589999999999999999998632 01 27
Q ss_pred ccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCc
Q 026816 159 RLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDL 211 (232)
Q Consensus 159 rlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~ 211 (232)
++|+++++.+.+|...|.+.|+|+..++++++|.++... ..+..||...+.
T Consensus 318 ~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~--~~~~~gan~~~~ 368 (568)
T TIGR00409 318 ELATEEEIFQKIASGPGSLGPVNINGGIPVLIDQTVALM--SDFAAGANADDK 368 (568)
T ss_pred ccCCHHHHHHhhCCCCCccCccccccCceEEechhhhcc--cccccccCCCCc
Confidence 899999999999999999999999888999999999875 556667777654
No 15
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=49.56 E-value=12 Score=25.07 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=13.3
Q ss_pred cCCHhhHhhhhCCCC
Q 026816 160 LAPEETSMNLTGYEH 174 (232)
Q Consensus 160 lA~~ee~~~lTGy~~ 174 (232)
|.+++|+.++|||..
T Consensus 2 fLT~~El~elTG~k~ 16 (47)
T PF13986_consen 2 FLTDEELQELTGYKR 16 (47)
T ss_pred CCCHHHHHHHHCCCC
Confidence 578999999999984
No 16
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=29.52 E-value=1.2e+02 Score=24.15 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLA 90 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg 90 (232)
.+.++..++|+++|+ +|+++..-.+ .+|.++-...+.
T Consensus 12 st~RKA~~~L~~~gi-~~~~~d~~~~--p~t~~eL~~~l~ 48 (126)
T TIGR01616 12 ANNARQKAALKASGH-DVEVQDILKE--PWHADTLRPYFG 48 (126)
T ss_pred HHHHHHHHHHHHCCC-CcEEEeccCC--CcCHHHHHHHHH
Confidence 578899999999999 8888765332 344444433333
No 17
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=29.42 E-value=4.4e+02 Score=24.01 Aligned_cols=139 Identities=22% Similarity=0.237 Sum_probs=82.3
Q ss_pred HHHhh-cCCCCCCCCcCCCCCCCCCcCCCChHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHH--HHhCCCCccceE
Q 026816 22 LEQTI-LSVDDDDVSSSAAVPASTPHTTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRR--DVLAAACIHHLC 98 (232)
Q Consensus 22 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA--~~lg~~s~~~l~ 98 (232)
|.|++ .+.+...|.-.|++|+..-+..-++-++++-+.|.+.+. +|-++..|+. .|+=+ ...+++
T Consensus 70 l~QALIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~f-DyIi~DsPAG-----IE~G~~~A~~~Ad------ 137 (272)
T COG2894 70 LNQALIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKAMDF-DYIIIDSPAG-----IEQGFKNAVYFAD------ 137 (272)
T ss_pred hhhHhhccccCCceEecccccccCcccCCHHHHHHHHHHHHhcCC-CEEEecCcch-----HHHHHHhhhhccc------
Confidence 44443 233344555566777655555666788899999998776 8888888775 22211 223444
Q ss_pred EEEEEEecccCCccccccCCC------------CC---eEEEEEEecCCccCHHHHHHHhhhccCCCCCCcccccccCCH
Q 026816 99 KSIVLVNTQAQSSVVDCSDRN------------NS---KYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPE 163 (232)
Q Consensus 99 KSlvl~n~~~~~~~~~~~d~~------------~~---~y~lvVv~~~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ 163 (232)
+.||+.|-.-. +| ..+|+- .+ ++-+++- |++.+.+++ =.|.+-
T Consensus 138 ~AiVVtnPEvS-sV-RDsDRiiGlLesk~~rae~~~~~~~~llvn----R~~p~~v~~----------------GeMlsv 195 (272)
T COG2894 138 EAIVVTNPEVS-SV-RDSDRIIGLLESKSRRAEIGEEPKEHLLLN----RYRPEMVKR----------------GEMLSV 195 (272)
T ss_pred eEEEEcCCCcc-cc-ccchhheeehhcccchhhcCCcccceEEEE----ccCHHHhcc----------------CCcccH
Confidence 77888875431 11 111110 00 0222222 334444321 257899
Q ss_pred hhHhhhhCCCCCcccCCCc------ccCccEEEchhh
Q 026816 164 ETSMNLTGYEHNAVTCIGM------KTDIPVILDEAI 194 (232)
Q Consensus 164 ee~~~lTGy~~GgVsPfG~------~~~ipviiD~~l 194 (232)
+++.++.+.+.=||-|=.. .++.|+++++..
T Consensus 196 ~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~l~~~~ 232 (272)
T COG2894 196 EDVLEILSIPLIGVIPEDQDVLRASNKGEPVILDDNS 232 (272)
T ss_pred HHHHHHhCCceEEeecCchhhheecCCCCCeEeCCCc
Confidence 9999999999888888554 367999988763
No 18
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.51 E-value=1.4e+02 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPS 75 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~ 75 (232)
+.-++++++|+++|+ .|+++.+-.
T Consensus 10 ~~c~ka~~~L~~~~i-~~~~idi~~ 33 (105)
T cd02977 10 STSRKALAWLEEHGI-EYEFIDYLK 33 (105)
T ss_pred HHHHHHHHHHHHcCC-CcEEEeecc
Confidence 566799999999999 888877643
No 19
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=27.28 E-value=1.5e+02 Score=22.71 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVP 74 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p 74 (232)
+..+++.++|+++|+ .|+++.+-
T Consensus 11 ~~c~ka~~~L~~~gi-~~~~idi~ 33 (115)
T cd03032 11 SSCRKAKQWLEEHQI-PFEERNLF 33 (115)
T ss_pred HHHHHHHHHHHHCCC-ceEEEecC
Confidence 567799999999999 88888764
No 20
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=27.22 E-value=1.6e+02 Score=21.20 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSD 76 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~ 76 (232)
+--.+.+++|++.|+ +|+.+.+..+
T Consensus 12 PyC~~ak~~L~~~g~-~~~~i~~~~~ 36 (80)
T COG0695 12 PYCKRAKRLLDRKGV-DYEEIDVDDD 36 (80)
T ss_pred chHHHHHHHHHHcCC-CcEEEEecCC
Confidence 455699999999999 8888777665
No 21
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=26.04 E-value=1.7e+02 Score=22.29 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLA 90 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg 90 (232)
....+..++|+++|+ .|+++.+-.+ ..|.++-...+.
T Consensus 10 ~~crka~~~L~~~~i-~~~~~di~~~--p~s~~eL~~~l~ 46 (105)
T cd03035 10 DTVKKARKWLEARGV-AYTFHDYRKD--GLDAATLERWLA 46 (105)
T ss_pred HHHHHHHHHHHHcCC-CeEEEecccC--CCCHHHHHHHHH
Confidence 566799999999999 8888766433 345555444444
No 22
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.72 E-value=1.3e+02 Score=19.75 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSD 76 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~ 76 (232)
+--++++++|++.|+ +|++..+..+
T Consensus 10 ~~C~~~~~~L~~~~i-~y~~~dv~~~ 34 (60)
T PF00462_consen 10 PYCKKAKEFLDEKGI-PYEEVDVDED 34 (60)
T ss_dssp HHHHHHHHHHHHTTB-EEEEEEGGGS
T ss_pred cCHHHHHHHHHHcCC-eeeEcccccc
Confidence 345689999999999 8888887654
No 23
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=25.64 E-value=1.4e+02 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHCCCCceeEEEcCC
Q 026816 50 RDTEARLSNILRSNGVNDFQFKKVPS 75 (232)
Q Consensus 50 ~~~~~rv~~~L~~~gi~~~~~~~~p~ 75 (232)
++...+.+++|+++|+ +|+++.+-.
T Consensus 9 C~~c~ka~~~L~~~~i-~~~~idi~~ 33 (111)
T cd03036 9 CSTCRKAKKWLDEHGV-DYTAIDIVE 33 (111)
T ss_pred CHHHHHHHHHHHHcCC-ceEEecccC
Confidence 3567799999999999 888876644
No 24
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=24.04 E-value=1.6e+02 Score=23.39 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPS 75 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~ 75 (232)
+..+++.++|+++|| +|+++.+..
T Consensus 11 ~~C~ka~~~L~~~gi-~~~~idi~~ 34 (131)
T PRK01655 11 TSCRKAKAWLEEHDI-PFTERNIFS 34 (131)
T ss_pred hHHHHHHHHHHHcCC-CcEEeeccC
Confidence 567799999999999 888877643
No 25
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=23.71 E-value=3e+02 Score=20.30 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=30.9
Q ss_pred CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccC
Q 026816 79 DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFN 135 (232)
Q Consensus 79 ~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld 135 (232)
..|+.+..+.||+| ...+ + +|+.|.+. .+.+.....+-.+.|.|..+.+|
T Consensus 32 ~~tvkd~IEsLGVP-~tEV-~-~i~vNG~~----v~~~~~~~~Gd~v~V~P~~~~~~ 81 (81)
T PF14451_consen 32 GATVKDVIESLGVP-HTEV-G-LILVNGRP----VDFDYRLKDGDRVAVYPVFRPQD 81 (81)
T ss_pred CCcHHHHHHHcCCC-hHHe-E-EEEECCEE----CCCcccCCCCCEEEEEecccCCC
Confidence 46899999999998 4444 4 44455432 23333333445677777776654
No 26
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=23.51 E-value=1.8e+02 Score=22.60 Aligned_cols=36 Identities=19% Similarity=0.482 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHh
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVL 89 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~l 89 (232)
...++..++|+++|+ +|+++.+-.+ ..|.++-...+
T Consensus 11 ~~crkA~~~L~~~gi-~~~~~d~~~~--p~s~~eL~~~l 46 (113)
T cd03033 11 ANNARQKALLEAAGH-EVEVRDLLTE--PWTAETLRPFF 46 (113)
T ss_pred HHHHHHHHHHHHcCC-CcEEeehhcC--CCCHHHHHHHH
Confidence 566799999999999 8888765432 33444433333
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=23.41 E-value=2.4e+02 Score=19.29 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSD 76 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~ 76 (232)
+.-.+++++|+++|+ +|+.+.+..+
T Consensus 10 p~C~~ak~~L~~~~i-~~~~~di~~~ 34 (72)
T TIGR02194 10 VQCKMTKKALEEHGI-AFEEINIDEQ 34 (72)
T ss_pred HHHHHHHHHHHHCCC-ceEEEECCCC
Confidence 456799999999999 8888877543
No 28
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=23.37 E-value=1.4e+02 Score=20.65 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSDY 77 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y 77 (232)
.....+.+-+..+|++.|.+..+|.+-
T Consensus 3 ~lk~eI~~KI~anGV~~ftLeiV~nd~ 29 (52)
T PF06649_consen 3 ELKAEIEQKIIANGVSSFTLEIVPNDQ 29 (52)
T ss_pred HHHHHHHHHHHHcCCCceEEEEeeCcc
Confidence 345678888999999999999999873
No 29
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=23.18 E-value=2.4e+02 Score=19.49 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSD 76 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~ 76 (232)
+--.+++++|+++|+ +|+++.+..+
T Consensus 10 p~C~~a~~~L~~~~i-~~~~~di~~~ 34 (79)
T TIGR02181 10 PYCTRAKALLSSKGV-TFTEIRVDGD 34 (79)
T ss_pred hhHHHHHHHHHHcCC-CcEEEEecCC
Confidence 455689999999999 8888877543
No 30
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=23.12 E-value=2.1e+02 Score=21.97 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCC-CCCCccHHHHHHHhCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPS-DYYDWPLESRRDVLAA 91 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~-~y~~~tle~aA~~lg~ 91 (232)
.+.++..++|+++|+ +|+++..-. ..+...+..-...+|.
T Consensus 10 ~t~rkA~~~L~~~~i-~~~~~di~~~~~t~~el~~~l~~~~~ 50 (112)
T cd03034 10 SKSRNALALLEEAGI-EPEIVEYLKTPPTAAELRELLAKLGI 50 (112)
T ss_pred HHHHHHHHHHHHCCC-CeEEEecccCCcCHHHHHHHHHHcCC
Confidence 677899999999999 888776522 2222334444444553
No 31
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=23.10 E-value=1.3e+02 Score=20.90 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPS 75 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~ 75 (232)
+-..+++.+|.+.|+ +|+++.+..
T Consensus 11 p~~~kv~~~L~~~gi-~y~~~~v~~ 34 (77)
T cd03041 11 PFCRLVREVLTELEL-DVILYPCPK 34 (77)
T ss_pred chHHHHHHHHHHcCC-cEEEEECCC
Confidence 456799999999999 999887754
No 32
>PRK10853 putative reductase; Provisional
Probab=22.53 E-value=1.9e+02 Score=22.68 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHCCCCceeEEEc
Q 026816 51 DTEARLSNILRSNGVNDFQFKKV 73 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~ 73 (232)
.+.++..++|+++|+ .|+++..
T Consensus 11 ~t~rkA~~~L~~~~i-~~~~~d~ 32 (118)
T PRK10853 11 DTIKKARRWLEAQGI-DYRFHDY 32 (118)
T ss_pred HHHHHHHHHHHHcCC-CcEEeeh
Confidence 578899999999999 8887765
No 33
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=22.07 E-value=3.2e+02 Score=19.84 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHCCCCceeEEEcCCC
Q 026816 50 RDTEARLSNILRSNGVNDFQFKKVPSD 76 (232)
Q Consensus 50 ~~~~~rv~~~L~~~gi~~~~~~~~p~~ 76 (232)
.+--.+++++|++.|+ +|..+.+..+
T Consensus 23 Cp~C~~ak~~L~~~~i-~y~~idv~~~ 48 (90)
T cd03028 23 CGFSRKVVQILNQLGV-DFGTFDILED 48 (90)
T ss_pred CcHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence 3566799999999999 8888877553
No 34
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=21.57 E-value=1.6e+02 Score=20.15 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSD 76 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~ 76 (232)
+.-.+++++|+++|+ +|..+.+..+
T Consensus 12 p~C~~ak~~L~~~~i-~~~~~~v~~~ 36 (72)
T cd03029 12 PFCARAKAALQENGI-SYEEIPLGKD 36 (72)
T ss_pred HHHHHHHHHHHHcCC-CcEEEECCCC
Confidence 455688999999999 8887777554
No 35
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=21.33 E-value=1.6e+02 Score=20.03 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHCCCCceeEEEcCC
Q 026816 48 TIRDTEARLSNILRSNGVNDFQFKKVPS 75 (232)
Q Consensus 48 ~~~~~~~rv~~~L~~~gi~~~~~~~~p~ 75 (232)
..++-..+++.+|+..|+ +|+++.+..
T Consensus 14 s~sp~~~~v~~~L~~~~i-~~~~~~~~~ 40 (72)
T cd03054 14 SLSPECLKVETYLRMAGI-PYEVVFSSN 40 (72)
T ss_pred CCCHHHHHHHHHHHhCCC-ceEEEecCC
Confidence 345677899999999999 888887654
No 36
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=21.23 E-value=1.3e+02 Score=21.18 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSD 76 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~ 76 (232)
+.-.+++++|++.|+ +|+.+.+..+
T Consensus 19 p~C~~ak~~L~~~gi-~y~~idi~~~ 43 (79)
T TIGR02190 19 PFCAKAKATLKEKGY-DFEEIPLGND 43 (79)
T ss_pred HhHHHHHHHHHHcCC-CcEEEECCCC
Confidence 556799999999999 8888777554
No 37
>PRK12559 transcriptional regulator Spx; Provisional
Probab=21.11 E-value=2.3e+02 Score=22.59 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLA 90 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg 90 (232)
+...+..++|+++|+ +|+++.+-.+ ..+.++-...+.
T Consensus 11 ~~crkA~~~L~~~gi-~~~~~di~~~--~~s~~el~~~l~ 47 (131)
T PRK12559 11 ASCRKAKAWLEENQI-DYTEKNIVSN--SMTVDELKSILR 47 (131)
T ss_pred hHHHHHHHHHHHcCC-CeEEEEeeCC--cCCHHHHHHHHH
Confidence 567789999999999 8888766432 445555444444
No 38
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=21.02 E-value=2.4e+02 Score=22.46 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVP 74 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p 74 (232)
+..++..++|+++|+ .|+++.+-
T Consensus 11 ~~crkA~~~L~~~~i-~~~~~d~~ 33 (132)
T PRK13344 11 TSCKKAKTWLNAHQL-SYKEQNLG 33 (132)
T ss_pred HHHHHHHHHHHHcCC-CeEEEECC
Confidence 577899999999999 88887764
No 39
>PRK10026 arsenate reductase; Provisional
Probab=20.90 E-value=2.1e+02 Score=23.36 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCCC-CCCccHHHHHHHhCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPSD-YYDWPLESRRDVLAA 91 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~~-y~~~tle~aA~~lg~ 91 (232)
.+.++..++|+++|+ +|+++.+-.+ .+...+..-.+.+|.
T Consensus 13 st~RKA~~wL~~~gi-~~~~~d~~~~ppt~~eL~~~l~~~g~ 53 (141)
T PRK10026 13 GTSRNTLEMIRNSGT-EPTIIHYLETPPTRDELVKLIADMGI 53 (141)
T ss_pred HHHHHHHHHHHHCCC-CcEEEeeeCCCcCHHHHHHHHHhCCC
Confidence 577899999999999 8887765332 222233343444454
No 40
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.29 E-value=2.5e+02 Score=21.59 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHCCCCceeEEEcCC-CCCCccHHHHHHHhCC
Q 026816 51 DTEARLSNILRSNGVNDFQFKKVPS-DYYDWPLESRRDVLAA 91 (232)
Q Consensus 51 ~~~~rv~~~L~~~gi~~~~~~~~p~-~y~~~tle~aA~~lg~ 91 (232)
.+.++..++|+++|+ .|+++..-. ..+...+.+-.+.+|.
T Consensus 10 ~t~rkA~~~L~~~~i-~~~~~di~~~p~t~~el~~~l~~~g~ 50 (114)
T TIGR00014 10 SKSRNTLALLEDKGI-EPEVVKYLKNPPTKSELEAIFAKLGL 50 (114)
T ss_pred HHHHHHHHHHHHCCC-CeEEEeccCCCcCHHHHHHHHHHcCC
Confidence 677899999999999 877765422 2222334444455554
Done!