BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026817
MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE
KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI
PDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQ
GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVGA

High Scoring Gene Products

Symbol, full name Information P value
SYP71
syntaxin of plants 71
protein from Arabidopsis thaliana 1.8e-62
SYP72
syntaxin of plants 72
protein from Arabidopsis thaliana 9.6e-57
syn8B
putative t-SNARE family protein
gene from Dictyostelium discoideum 2.5e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026817
        (232 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2075054 - symbol:SYP71 "syntaxin of plants 71"...   638  1.8e-62   1
TAIR|locus:2078282 - symbol:SYP72 "syntaxin of plants 72"...   584  9.6e-57   1
DICTYBASE|DDB_G0288439 - symbol:syn8B "putative t-SNARE f...   118  2.5e-05   1


>TAIR|locus:2075054 [details] [associations]
            symbol:SYP71 "syntaxin of plants 71" species:3702
            "Arabidopsis thaliana" [GO:0005484 "SNAP receptor activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006886
            "intracellular protein transport" evidence=IEA;TAS] [GO:0008565
            "protein transporter activity" evidence=TAS] [GO:0016021 "integral
            to membrane" evidence=TAS] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0006612 "protein targeting to membrane"
            evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006605 "protein
            targeting" evidence=RCA] InterPro:IPR000727 InterPro:IPR006012
            Pfam:PF05739 PROSITE:PS00914 PROSITE:PS50192 GO:GO:0005783
            GO:GO:0016021 GO:GO:0005886 GO:GO:0009506 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006612 GO:GO:0008565 EMBL:AC016661
            EMBL:AF355757 EMBL:AY090358 IPI:IPI00523840 RefSeq:NP_566354.1
            UniGene:At.20899 UniGene:At.66500 ProteinModelPortal:Q9SF29
            SMR:Q9SF29 STRING:Q9SF29 PaxDb:Q9SF29 PRIDE:Q9SF29
            EnsemblPlants:AT3G09740.1 GeneID:820132 KEGG:ath:AT3G09740
            GeneFarm:3895 TAIR:At3g09740 eggNOG:NOG71047 HOGENOM:HOG000241575
            InParanoid:Q9SF29 KO:K08506 OMA:MASDMNE PhylomeDB:Q9SF29
            ProtClustDB:CLSN2688218 Genevestigator:Q9SF29 GermOnline:AT3G09740
            Uniprot:Q9SF29
        Length = 266

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 133/219 (60%), Positives = 155/219 (70%)

Query:     1 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
             M+VID++TRVD+IC            E N+ GDDAFARLYG  +  ++ AL+K+E    E
Sbjct:     1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query:    61 KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
             KNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL AR+DLV AL  RIE I
Sbjct:    61 KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query:   121 PDXXXXXXXXXXXXXXXXXXXX--IKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
             PD                      IKFD  S G+FDD+YFQE+ ESS FRQEYEMR++KQ
Sbjct:   121 PDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQ 178

Query:   179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
             +QGLD+I EGLD LKNMA DMNEE+DRQVP+MDEID KV
Sbjct:   179 EQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKV 217


>TAIR|locus:2078282 [details] [associations]
            symbol:SYP72 "syntaxin of plants 72" species:3702
            "Arabidopsis thaliana" [GO:0005484 "SNAP receptor activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006886
            "intracellular protein transport" evidence=IEA;TAS] [GO:0016020
            "membrane" evidence=IEA] [GO:0008565 "protein transporter activity"
            evidence=TAS] [GO:0016021 "integral to membrane" evidence=TAS]
            [GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0009827
            "plant-type cell wall modification" evidence=RCA] [GO:0009860
            "pollen tube growth" evidence=RCA] [GO:0016192 "vesicle-mediated
            transport" evidence=RCA] InterPro:IPR000727 InterPro:IPR006012
            Pfam:PF05739 PROSITE:PS00914 PROSITE:PS50192 GO:GO:0016021
            EMBL:CP002686 GO:GO:0006886 GO:GO:0008565 GO:GO:0005622
            EMBL:AL132953 eggNOG:NOG71047 KO:K08506 EMBL:AF355758
            IPI:IPI00539215 RefSeq:NP_566878.1 UniGene:At.1104
            ProteinModelPortal:Q94KK6 SMR:Q94KK6 STRING:Q94KK6 PRIDE:Q94KK6
            EnsemblPlants:AT3G45280.1 GeneID:823666 KEGG:ath:AT3G45280
            GeneFarm:3896 TAIR:At3g45280 InParanoid:Q94KK6 OMA:SEESSQF
            PhylomeDB:Q94KK6 ProtClustDB:CLSN2917375 Genevestigator:Q94KK6
            Uniprot:Q94KK6
        Length = 267

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 120/219 (54%), Positives = 152/219 (69%)

Query:     1 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
             M VID+I RVD IC            E+   GDDAF+RL+  + +D++A L+K+E A+TE
Sbjct:     1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query:    61 KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
             KNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE E+R DLV AL DR++ I
Sbjct:    61 KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120

Query:   121 PDXXXXXXXXXXXXXXXXXX--XXIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
             PD                      IKFD  S    DD +FQ++EESS FRQEYEMRR KQ
Sbjct:   121 PDGNEHGAKQANSDWGGASAPNKNIKFDM-SEEDMDDGFFQQSEESSQFRQEYEMRRKKQ 179

Query:   179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
             D+GLD+I EGLD LKN+A DMNEE+D+QVP+M+E++ KV
Sbjct:   180 DEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKV 218


>DICTYBASE|DDB_G0288439 [details] [associations]
            symbol:syn8B "putative t-SNARE family protein"
            species:44689 "Dictyostelium discoideum" [GO:0006810 "transport"
            evidence=ISS] [GO:0005887 "integral to plasma membrane"
            evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000727 Pfam:PF05739 PROSITE:PS50192
            SMART:SM00397 dictyBase:DDB_G0288439 GO:GO:0005887 GO:GO:0006810
            GenomeReviews:CM000154_GR EMBL:AAFI02000111 KO:K08501
            RefSeq:XP_636754.1 HSSP:Q9Z2Q7 ProteinModelPortal:Q54IX6
            STRING:Q54IX6 EnsemblProtists:DDB0231545 GeneID:8626632
            KEGG:ddi:DDB_G0288439 eggNOG:NOG259218 OMA:MISERSS Uniprot:Q54IX6
        Length = 250

 Score = 118 (46.6 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 37/167 (22%), Positives = 75/167 (44%)

Query:    55 EAAATEKNRATAVAMN--AEIRRTKARLLEEVAKLQ-RLAFKKVKGLSKEELEARSDLVA 111
             E +  ++N    V  N  A++R     +  E+ +LQ  L +   + + ++EL  R + V 
Sbjct:    25 EYSIQQRNNPGIVQKNTPAKLRNGLVHITNEILRLQDSLTYGNNRNIQEKELLRRKNKVE 84

Query:   112 AL---KDRIEGIPDXXXXXXXXXXXXXXXXXXXXIKFDTYSGGK-FDDEYFQETEESSGF 167
             +L   K+++    D                    I +     GK  + E  ++ +    F
Sbjct:    85 SLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQFDNQQLF 144

Query:   168 RQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEID 214
               +  + R +QD+ LD++ + +   KNMAH M+ E+D+   M+D+++
Sbjct:   145 TNQQHIMR-EQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVE 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       200   0.00087  111 3  11 22  0.49    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  129 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.46u 0.16s 20.62t   Elapsed:  00:00:01
  Total cpu time:  20.46u 0.16s 20.62t   Elapsed:  00:00:01
  Start:  Sat May 11 06:39:37 2013   End:  Sat May 11 06:39:38 2013

Back to top