BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026817
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EUJ|A Chain A, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Symmetric Dimer
pdb|3EUK|A Chain A, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
pdb|3EUK|C Chain C, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
pdb|3EUK|F Chain F, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
pdb|3EUK|H Chain H, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
Length = 483
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 41 GVVQA--DLDAALQKSEAAATEKNRATAVA--MNAEIRRTKARLLEEVAKLQRLAFKKVK 96
GV QA D++AAL+++ + A +VA + I+R + R+L+ LQ +AF +VK
Sbjct: 227 GVRQAFQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIAFGQVK 286
Query: 97 G--LSKEELEARSDLVAALKDRIE 118
G L + S L+ AL D+ E
Sbjct: 287 GVRLVVNIRDTHSILLNALSDQHE 310
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEK 216
+ D+ L+ + + L++MA DM EID Q +D I EK
Sbjct: 451 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEK 490
>pdb|2F6P|A Chain A, Benm Effector Binding Domain- Semet Derivative
pdb|2F6P|B Chain B, Benm Effector Binding Domain- Semet Derivative
Length = 232
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 187 EGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS 221
E L + +H +N+ D+ V + D IDEK++LY
Sbjct: 82 ERLXVAVHASHPLNQXKDKGVHLNDLIDEKILLYP 116
>pdb|3K1P|A Chain A, Crystal Structure Of Full-Length Benm E226k Mutant
pdb|3K1P|B Chain B, Crystal Structure Of Full-Length Benm E226k Mutant
Length = 312
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 196 AHDMNEEIDRQVPMMDEIDEKVILYS 221
+H +N+ D+ V + D IDEK++LY
Sbjct: 171 SHPLNQMKDKGVHLNDLIDEKILLYP 196
>pdb|2F6G|A Chain A, Benm Effector Binding Domain
pdb|2F6G|B Chain B, Benm Effector Binding Domain
pdb|2F78|A Chain A, Benm Effector Binding Domain With Its Effector Benzoate
pdb|2F78|B Chain B, Benm Effector Binding Domain With Its Effector Benzoate
pdb|2F7A|A Chain A, Benm Effector Binding Domain With Its Effector,
Cis,Cis-Muconate
pdb|2F7A|B Chain B, Benm Effector Binding Domain With Its Effector,
Cis,Cis-Muconate
pdb|2F8D|A Chain A, Benm Effector-binding Domain Crystallized From High Ph
Conditions
pdb|2F8D|B Chain B, Benm Effector-binding Domain Crystallized From High Ph
Conditions
pdb|2F97|A Chain A, Effector Binding Domain Of Benm (Crystals Generated From
High Ph Conditions)
Length = 232
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 196 AHDMNEEIDRQVPMMDEIDEKVILYS 221
+H +N+ D+ V + D IDEK++LY
Sbjct: 91 SHPLNQMKDKGVHLNDLIDEKILLYP 116
>pdb|3K1N|A Chain A, Crystal Structure Of Full-Length Benm
pdb|3K1N|B Chain B, Crystal Structure Of Full-Length Benm
Length = 312
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 196 AHDMNEEIDRQVPMMDEIDEKVILYS 221
+H +N+ D+ V + D IDEK++LY
Sbjct: 171 SHPLNQMKDKGVHLNDLIDEKILLYP 196
>pdb|3K1M|A Chain A, Crystal Structure Of Full-Length Benm, R156h Mutant
pdb|3K1M|B Chain B, Crystal Structure Of Full-Length Benm, R156h Mutant
Length = 312
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 196 AHDMNEEIDRQVPMMDEIDEKVILYS 221
+H +N+ D+ V + D IDEK++LY
Sbjct: 171 SHPLNQMKDKGVHLNDLIDEKILLYP 196
>pdb|1SFC|D Chain D, Neuronal Synaptic Fusion Complex
pdb|1SFC|H Chain H, Neuronal Synaptic Fusion Complex
pdb|1SFC|L Chain L, Neuronal Synaptic Fusion Complex
Length = 87
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 164 SSGF--RQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEK 216
S GF R + R + D+ L+ + + L++MA DM EID Q +D I EK
Sbjct: 11 SGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEK 65
>pdb|2H99|A Chain A, Crystal Structure Of The Effector Binding Domain Of A Benm
Variant (R156h,T157s)
pdb|2H99|B Chain B, Crystal Structure Of The Effector Binding Domain Of A Benm
Variant (R156h,T157s)
pdb|2H9B|A Chain A, Crystal Structure Of The Effector Binding Domain Of A Benm
Variant (Benm R156hT157S)
pdb|2H9B|B Chain B, Crystal Structure Of The Effector Binding Domain Of A Benm
Variant (Benm R156hT157S)
Length = 312
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 196 AHDMNEEIDRQVPMMDEIDEKVILYS 221
+H +N+ D+ V + D IDEK++LY
Sbjct: 171 SHPLNQMKDKGVHLNDLIDEKILLYP 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,180,429
Number of Sequences: 62578
Number of extensions: 175019
Number of successful extensions: 576
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 23
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)