BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026817
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SF29|SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1
Length = 266
Score = 303 bits (776), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 150/219 (68%), Positives = 175/219 (79%), Gaps = 4/219 (1%)
Query: 1 MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
M+VID++TRVD+ICKKYDKYDVDKQ+E N+ GDDAFARLYG + ++ AL+K+E E
Sbjct: 1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60
Query: 61 KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
KNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL AR+DLV AL RIE I
Sbjct: 61 KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120
Query: 121 PDGSTAAAKQTGGGTTSA--SYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
PDG+ K T T S+ S IKFD S G+FDD+YFQE+ ESS FRQEYEMR++KQ
Sbjct: 121 PDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQ 178
Query: 179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
+QGLD+I EGLD LKNMA DMNEE+DRQVP+MDEID KV
Sbjct: 179 EQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKV 217
>sp|Q94KK6|SYP72_ARATH Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1
Length = 267
Score = 276 bits (706), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 136/219 (62%), Positives = 171/219 (78%), Gaps = 3/219 (1%)
Query: 1 MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
M VID+I RVD ICKKYDKYD+DK +E+ GDDAF+RL+ + +D++A L+K+E A+TE
Sbjct: 1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60
Query: 61 KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
KNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE E+R DLV AL DR++ I
Sbjct: 61 KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120
Query: 121 PDGSTAAAKQTGG--GTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178
PDG+ AKQ G SA IKFD S DD +FQ++EESS FRQEYEMRR KQ
Sbjct: 121 PDGNEHGAKQANSDWGGASAPNKNIKFD-MSEEDMDDGFFQQSEESSQFRQEYEMRRKKQ 179
Query: 179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
D+GLD+I EGLD LKN+A DMNEE+D+QVP+M+E++ KV
Sbjct: 180 DEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKV 218
>sp|Q94KK5|SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1
Length = 263
Score = 271 bits (694), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/218 (62%), Positives = 170/218 (77%), Gaps = 5/218 (2%)
Query: 1 MSVIDLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAATE 60
M VIDLITRVD+ICKKY+KYD+++Q++ NV GDDAF+RLY V+ L+ LQK+E ++E
Sbjct: 1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60
Query: 61 KNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120
N+A AVAMNAEIRRTKARLLE + KLQRL+ KKVKGLSKEEL+AR+DLV +L+D+IE I
Sbjct: 61 TNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAI 120
Query: 121 PDGSTAAAKQTGGGTTSASYTGIKFDT-YSGGKFDDEYFQETEESSGFRQEYEMRRMKQD 179
P+ S A GG S SY+ I+FDT S + EYFQ T ES F+QEYEM+R+KQ
Sbjct: 121 PESS---APVVGGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQA 177
Query: 180 QGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
+ LD I EGLDTLKNMA D+NEE+DRQ P+MDEID K+
Sbjct: 178 R-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKI 214
>sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1
Length = 250
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 26/194 (13%)
Query: 34 DAFARLYGVVQADLD--AALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQ-RL 90
D +L + AD+ + Q++ +KN A++R + E+ +LQ L
Sbjct: 10 DNIVKLINSLTADIKEYSIQQRNNPGIVQKNTP------AKLRNGLVHITNEILRLQDSL 63
Query: 91 AFKKVKGLSKEELEARSDLVAAL---KDRIEGIPDGSTAAAKQTGGGTTSASYTGIKFDT 147
+ + + ++EL R + V +L K+++ D + Q + + GI +
Sbjct: 64 TYGNNRNIQEKELLRRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSN 123
Query: 148 YSGGKFDDEYFQETEESSGF-------RQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMN 200
GK +ETE + F Q++ MR +QD+ LD++ + + KNMAH M+
Sbjct: 124 RQFGKP-----KETEATKQFDNQQLFTNQQHIMR--EQDESLDLLSQSIMRQKNMAHAMS 176
Query: 201 EEIDRQVPMMDEID 214
E+D+ M+D+++
Sbjct: 177 NELDQHNEMLDDVE 190
>sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33
PE=1 SV=1
Length = 300
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 163 ESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222
ES+ Q EM + KQD GL + + L LKNMA DM EI++Q +D + + V +F
Sbjct: 226 ESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNF 285
>sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana
GN=SNAP30 PE=3 SV=1
Length = 263
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 169 QEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKV 217
Q+ E + KQD GL + + L LK+MA DM EID+Q +D + + V
Sbjct: 195 QKVEQEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDV 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,596,006
Number of Sequences: 539616
Number of extensions: 3408791
Number of successful extensions: 11544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 11485
Number of HSP's gapped (non-prelim): 122
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)