Query 026817
Match_columns 232
No_of_seqs 138 out of 402
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202 SNARE protein TLG1/Syn 99.9 3.1E-24 6.7E-29 185.1 20.0 176 31-222 3-194 (235)
2 PF09177 Syntaxin-6_N: Syntaxi 99.4 3.5E-12 7.5E-17 96.5 9.1 83 34-121 1-97 (97)
3 PF05739 SNARE: SNARE domain; 99.0 1.5E-09 3.3E-14 75.2 6.2 46 177-222 1-46 (63)
4 smart00397 t_SNARE Helical reg 98.8 1.7E-08 3.8E-13 69.6 6.1 52 171-222 3-54 (66)
5 cd00193 t_SNARE Soluble NSF (N 98.7 3.4E-08 7.4E-13 67.0 5.3 47 176-222 2-48 (60)
6 KOG3065 SNAP-25 (synaptosome-a 98.4 5.1E-07 1.1E-11 80.1 5.5 50 174-223 212-261 (273)
7 KOG3385 V-SNARE [Intracellular 97.9 1.7E-05 3.7E-10 61.3 4.6 46 176-221 32-77 (118)
8 KOG0812 SNARE protein SED5/Syn 95.1 2.3 5E-05 38.2 19.9 218 1-220 1-267 (311)
9 KOG0810 SNARE protein Syntaxin 94.4 2.9 6.2E-05 37.9 15.3 41 181-221 207-247 (297)
10 KOG0811 SNARE protein PEP12/VA 91.5 9.9 0.00021 34.0 18.2 53 170-222 170-222 (269)
11 COG5325 t-SNARE complex subuni 89.8 1.2 2.5E-05 39.8 6.7 55 169-223 184-238 (283)
12 PF12352 V-SNARE_C: Snare regi 80.1 10 0.00023 25.8 6.6 51 177-227 5-56 (66)
13 PF00804 Syntaxin: Syntaxin; 71.5 35 0.00076 24.5 11.5 87 34-120 3-102 (103)
14 PF09728 Taxilin: Myosin-like 68.4 50 0.0011 29.9 9.6 55 72-126 71-125 (309)
15 KOG3208 SNARE protein GS28 [In 64.6 97 0.0021 27.0 13.2 172 10-227 21-198 (231)
16 KOG0809 SNARE protein TLG2/Syn 56.4 1.6E+02 0.0034 26.8 16.9 122 97-223 129-261 (305)
17 PF10669 Phage_Gp23: Protein g 55.4 25 0.00055 26.7 4.3 31 165-195 81-111 (121)
18 PF01519 DUF16: Protein of unk 54.7 54 0.0012 25.1 6.0 43 177-219 50-92 (102)
19 PF06008 Laminin_I: Laminin Do 51.7 1.6E+02 0.0036 25.6 11.5 86 3-90 96-200 (264)
20 PF10498 IFT57: Intra-flagella 51.2 1.6E+02 0.0035 27.3 9.9 51 72-122 298-349 (359)
21 PF07083 DUF1351: Protein of u 47.9 1.8E+02 0.0038 24.9 9.8 19 5-23 19-37 (215)
22 KOG4746 Small nuclear RNA acti 44.9 88 0.0019 29.6 7.0 53 7-59 133-208 (423)
23 PF04912 Dynamitin: Dynamitin 44.3 2.7E+02 0.0058 25.9 11.4 16 6-21 266-281 (388)
24 PF05008 V-SNARE: Vesicle tran 43.2 1.1E+02 0.0024 21.3 8.9 76 41-124 2-77 (79)
25 COG2096 cob(I)alamin adenosylt 41.9 1.2E+02 0.0025 25.7 6.7 87 28-125 23-112 (184)
26 cd00179 SynN Syntaxin N-termin 41.4 1.7E+02 0.0036 22.8 9.0 52 72-125 52-105 (151)
27 PF12325 TMF_TATA_bd: TATA ele 38.2 1.9E+02 0.0042 22.5 8.2 24 102-125 90-113 (120)
28 cd09236 V_AnPalA_UmRIM20_like 37.0 3.3E+02 0.0072 24.9 11.1 29 171-199 256-284 (353)
29 PF11559 ADIP: Afadin- and alp 36.5 2.1E+02 0.0046 22.6 9.5 15 102-116 134-148 (151)
30 PRK08026 flagellin; Validated 36.0 1E+02 0.0022 30.3 6.3 55 172-226 72-136 (529)
31 PF08317 Spc7: Spc7 kinetochor 35.8 3.3E+02 0.0073 24.6 12.2 23 94-116 269-291 (325)
32 COG1842 PspA Phage shock prote 32.9 3.3E+02 0.0071 23.6 8.5 44 13-57 3-46 (225)
33 KOG2150 CCR4-NOT transcription 32.3 5.2E+02 0.011 25.7 10.9 27 96-122 111-143 (575)
34 PF09753 Use1: Membrane fusion 31.9 3.4E+02 0.0074 23.5 16.9 47 175-221 162-208 (251)
35 PF06103 DUF948: Bacterial pro 31.3 2E+02 0.0043 20.6 6.2 43 180-222 26-72 (90)
36 COG5074 t-SNARE complex subuni 30.2 1.1E+02 0.0024 27.0 5.0 41 180-220 185-225 (280)
37 PRK15344 type III secretion sy 30.1 79 0.0017 22.5 3.4 23 184-206 2-24 (71)
38 COG2882 FliJ Flagellar biosynt 29.9 3E+02 0.0066 22.3 9.8 54 72-125 27-88 (148)
39 PTZ00059 dynein light chain; P 29.2 43 0.00092 24.7 2.0 24 193-231 37-60 (90)
40 PF12108 SF3a60_bindingd: Spli 28.1 54 0.0012 19.1 1.9 19 30-49 3-21 (28)
41 PRK06819 flagellin; Validated 28.0 91 0.002 29.2 4.4 54 172-225 72-135 (376)
42 PRK12804 flagellin; Provisiona 27.1 2.3E+02 0.005 25.3 6.7 56 170-225 68-134 (301)
43 smart00503 SynN Syntaxin N-ter 26.8 2.6E+02 0.0056 20.5 11.0 53 72-125 54-106 (117)
44 COG3352 FlaC Putative archaeal 26.4 2.4E+02 0.0052 23.2 5.9 54 71-127 75-134 (157)
45 PRK12808 flagellin; Provisiona 26.2 1.3E+02 0.0028 29.2 5.0 54 172-225 70-133 (476)
46 COG5278 Predicted periplasmic 25.6 4.3E+02 0.0093 22.6 9.3 56 30-90 72-127 (207)
47 KOG3647 Predicted coiled-coil 25.3 5.1E+02 0.011 23.4 11.6 21 103-123 142-162 (338)
48 PF07889 DUF1664: Protein of u 24.7 3.5E+02 0.0076 21.3 9.0 18 36-53 30-47 (126)
49 PRK08869 flagellin; Reviewed 24.5 1.4E+02 0.0031 27.8 5.0 54 172-225 71-134 (376)
50 KOG0994 Extracellular matrix g 24.5 7.7E+02 0.017 27.2 10.4 19 71-89 1235-1253(1758)
51 KOG0976 Rho/Rac1-interacting s 24.3 5.8E+02 0.013 26.8 9.3 59 67-126 242-309 (1265)
52 PF07889 DUF1664: Protein of u 23.5 3.7E+02 0.0081 21.2 9.3 18 103-120 105-122 (126)
53 PF10655 DUF2482: Hypothetical 23.2 31 0.00067 25.9 0.3 52 178-231 10-61 (100)
54 PF09851 SHOCT: Short C-termin 22.2 1.8E+02 0.0038 16.9 3.6 27 82-110 3-29 (31)
55 PF08580 KAR9: Yeast cortical 22.0 2.6E+02 0.0056 28.4 6.5 55 5-59 239-293 (683)
56 PF08134 cIII: cIII protein fa 20.8 1.6E+02 0.0035 18.6 3.1 24 98-121 17-41 (44)
57 KOG1748 Acyl carrier protein/N 20.5 80 0.0017 25.2 2.1 23 5-27 53-75 (131)
58 PRK12803 flagellin; Provisiona 20.5 2.1E+02 0.0046 26.3 5.2 54 172-225 70-133 (335)
59 PF12761 End3: Actin cytoskele 20.1 4.3E+02 0.0094 22.5 6.6 50 71-125 135-184 (195)
No 1
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-24 Score=185.08 Aligned_cols=176 Identities=17% Similarity=0.215 Sum_probs=121.5
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHhhhhh------h-hHHHHHHHHHHHHHHHHHHHHHHHHH---H--hhhccCC
Q 026817 31 YGDDAFARLYGVVQADLDAALQKSEAAATEKNR------A-TAVAMNAEIRRTKARLLEEVAKLQRL---A--FKKVKGL 98 (232)
Q Consensus 31 ~~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~------~-~~~~~~aeir~~l~~L~~~L~dL~~~---~--~~~~~~l 98 (232)
+..|||+.+|. |+.++.+..+.++.+.+. . ..|... .|| ..++|.+.+|+++ + .+.+|++
T Consensus 3 ~~~Dp~~~v~~----e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~-~lr---~~i~~~~edl~~~~~il~~~~~~~~i 74 (235)
T KOG3202|consen 3 SSEDPFFRVKN----ETLKLSEEIQGLYQRRSELLKDTGSDAEELTS-VLR---RSIEEDLEDLDELISILERNPSKFGI 74 (235)
T ss_pred CCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHH---HHhHHHHHHHHHHHHHHHhCcccccC
Confidence 56799966655 555555555555553221 1 334444 777 5777777777754 2 3378899
Q ss_pred CHHHHHHHHHHHHHHHHHHHchhhhhhhcccccC-CCCCCCCCCCCccCCCCCCCC-Ccch-hhhchh-hhHHHHHHHHH
Q 026817 99 SKEELEARSDLVAALKDRIEGIPDGSTAAAKQTG-GGTTSASYTGIKFDTYSGGKF-DDEY-FQETEE-SSGFRQEYEMR 174 (232)
Q Consensus 99 t~~El~rRr~~V~~l~~~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~t~~-~~~~~q~Qq~~ 174 (232)
++.|+.+|+.||.+++.++..|+..+.+.+..+. .+. +..+.+ .++. .... ...+.+ ++...+.|+++
T Consensus 75 de~El~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~-------~l~~~~-~~~~~~~~~~~~~~~D~v~~~~~~qqqm 146 (235)
T KOG3202|consen 75 DEFELSRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRD-------ILLGPE-KSPNLDEAMSRASGLDNVQEIVQLQQQM 146 (235)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh-------hhcCCC-CCCchhhhHHHhhccCcHHHHHHHHHHH
Confidence 9999999999999999999999999876221111 000 011100 0000 0000 001122 35567889999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 175 RMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 175 m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
|++||++||.||++|+|||+||.+||+||+.|+.|||+|++.||+|..
T Consensus 147 ~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~s 194 (235)
T KOG3202|consen 147 LQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTES 194 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999863
No 2
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=99.37 E-value=3.5e-12 Score=96.52 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=67.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhccCCC
Q 026817 34 DAFARLYGVVQADLDAALQKSEAAATEKNR---------ATAVAMNAEIRRTKARLLEEVAKLQRLA-----FKKVKGLS 99 (232)
Q Consensus 34 DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~---------~~~~~~~aeir~~l~~L~~~L~dL~~~~-----~~~~~~lt 99 (232)
||| |.|++||.+.+..+++++..-.. ...+.. .+|+..|..|+|+|.+|++++ .+.+|+|+
T Consensus 1 DPF----~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~-~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~ 75 (97)
T PF09177_consen 1 DPF----FVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLK-RELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLS 75 (97)
T ss_dssp -HH----HHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-H
T ss_pred CCc----HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC
Confidence 899 88899999999998888773111 123444 499999999999999999873 33788999
Q ss_pred HHHHHHHHHHHHHHHHHHHchh
Q 026817 100 KEELEARSDLVAALKDRIEGIP 121 (232)
Q Consensus 100 ~~El~rRr~~V~~l~~~i~~l~ 121 (232)
+.||.+|+.||..++.++..|+
T Consensus 76 ~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 76 EEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999875
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=98.97 E-value=1.5e-09 Score=75.16 Aligned_cols=46 Identities=30% Similarity=0.505 Sum_probs=44.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 177 eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
+||+.|+.|+.+|.+|++|+..||.||++|+.|||.|+..||+|+.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~ 46 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANE 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999864
No 4
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.78 E-value=1.7e-08 Score=69.57 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=49.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 171 YEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 171 Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
+.+++++||+.|+.|+.+|.++++++..|+.||..|++|||.++..+|.+..
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~ 54 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADV 54 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4678999999999999999999999999999999999999999999998864
No 5
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=98.69 E-value=3.4e-08 Score=66.96 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=45.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 176 MKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 176 ~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
++||+.|+.|+.+|.+|+.|+..||.||..|+++||.++..||.+..
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~ 48 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADV 48 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999864
No 6
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=5.1e-07 Score=80.09 Aligned_cols=50 Identities=36% Similarity=0.434 Sum_probs=46.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhccc
Q 026817 174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFV 223 (232)
Q Consensus 174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~ 223 (232)
.-.++|..|+.|+..+++||.||..||.||+.||..||.|...+|+..+.
T Consensus 212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~ 261 (273)
T KOG3065|consen 212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLR 261 (273)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhH
Confidence 33489999999999999999999999999999999999999999998764
No 7
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=1.7e-05 Score=61.30 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=44.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817 176 MKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS 221 (232)
Q Consensus 176 ~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~ 221 (232)
+|=|+.++.|..-|..||.++..||+|++.||.+||.|++++|+|+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts 77 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTS 77 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhH
Confidence 6778999999999999999999999999999999999999999986
No 8
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=2.3 Score=38.18 Aligned_cols=218 Identities=16% Similarity=0.172 Sum_probs=115.7
Q ss_pred CchHHHHHHHHHHHhhhhcCCh-hhccc-----CC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHhh-------h-hhhh
Q 026817 1 MSVIDLITRVDAICKKYDKYDV-DKQKE-----LN-VYGDDAFARLYGVVQADLDAALQKSEAAATE-------K-NRAT 65 (232)
Q Consensus 1 ~~~~~~~~~~~~~~~k~~~~~~-~~~~~-----~~-~~~~DPF~~~~~~v~~ei~~~l~~a~~~~~~-------~-~~~~ 65 (232)
||+=|=-.-..+.|++|.+-.. ..... .+ +...--|...-.-+-.+|...-.+...+... . .+-.
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~Ve 80 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVE 80 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchh
Confidence 4444544556788999998431 11111 01 1111246655555556777765555544331 1 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHHHHHHHchhhhhhhc-------------c---
Q 026817 66 AVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEE-LEARSDLVAALKDRIEGIPDGSTAA-------------A--- 128 (232)
Q Consensus 66 ~~~~~aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~E-l~rRr~~V~~l~~~i~~l~~~~~~~-------------~--- 128 (232)
...++--|+..+.+|...|.+|.... +..+..+..- ..-=+..|..|.+++..+...+..- +
T Consensus 81 I~eLT~iikqdi~sln~~i~~Lqei~-~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dk 159 (311)
T KOG0812|consen 81 IQELTFIIKQDITSLNSQIAQLQEIV-KANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDK 159 (311)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHHH-HHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 56666678888999999988888763 3333444321 3334566666666665554443210 0
Q ss_pred --cccC-CCCCCCCCCCCccC------CCCCCCCCc-chhhhchhhhHHHHHHHHHHHhhhhh-------HHHHHHHHHH
Q 026817 129 --KQTG-GGTTSASYTGIKFD------TYSGGKFDD-EYFQETEESSGFRQEYEMRRMKQDQG-------LDVIGEGLDT 191 (232)
Q Consensus 129 --~~~~-~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~t~~~~~~~q~Qq~~m~eQD~~-------LD~Is~~v~~ 191 (232)
++++ .++.+.+..+..+. .|.+..-.+ .....++. ..-+|+|-.++.++|+. +..|+.+|..
T Consensus 160 fs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~-~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsE 238 (311)
T KOG0812|consen 160 FSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDS-SNPQQQQMALLDESDEYVQERAKTMQNIESTISE 238 (311)
T ss_pred hccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0101 00000000000000 000000000 00000000 01145666778888765 5678888999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 026817 192 LKNMAHDMNEEIDRQVPMMDEIDEKVILY 220 (232)
Q Consensus 192 Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~ 220 (232)
|+++=..+..=+.+|++++--+|..||.+
T Consensus 239 lG~IF~QLA~mVseQ~E~i~RID~nv~ds 267 (311)
T KOG0812|consen 239 LGGIFQQLASMVSEQEETIQRIDDNVDDS 267 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999875
No 9
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=2.9 Score=37.89 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817 181 GLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS 221 (232)
Q Consensus 181 ~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~ 221 (232)
.+-.|..+|..||+|=..|...++.|++|||.++..|.++.
T Consensus 207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~ 247 (297)
T KOG0810|consen 207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAV 247 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998764
No 10
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=9.9 Score=33.96 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=48.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 170 EYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 170 ~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
.|+.++++..+++..|...|..+.+|=..+|.=+.+|++++|.++..|++|+-
T Consensus 170 ~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~ 222 (269)
T KOG0811|consen 170 YQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASV 222 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999863
No 11
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=89.80 E-value=1.2 Score=39.79 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhccc
Q 026817 169 QEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFV 223 (232)
Q Consensus 169 q~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~ 223 (232)
..|+-+..+=|+....|+.+|..|.+|=..||.=+.+|+.+.|.+|-.+++|++.
T Consensus 184 ~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n 238 (283)
T COG5325 184 EYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDN 238 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHH
Confidence 3466778888999999999999999999999999999999999999999999864
No 12
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=80.13 E-value=10 Score=25.80 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc-cccchh
Q 026817 177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS-FVGISQ 227 (232)
Q Consensus 177 eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~-~~~~~~ 227 (232)
+....|+.-...+...-++|..+-.+|..|.+.|......++.+. ++|.|.
T Consensus 5 ~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~ 56 (66)
T PF12352_consen 5 RESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSN 56 (66)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444588899999999999999999999999999999999887653 344443
No 13
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=71.46 E-value=35 Score=24.50 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=51.0
Q ss_pred CchhhhHHHHHHHHHHH---HHHHHHHHhh----h-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCH
Q 026817 34 DAFARLYGVVQADLDAA---LQKSEAAATE----K-----NRATAVAMNAEIRRTKARLLEEVAKLQRLAF-KKVKGLSK 100 (232)
Q Consensus 34 DPF~~~~~~v~~ei~~~---l~~a~~~~~~----~-----~~~~~~~~~aeir~~l~~L~~~L~dL~~~~~-~~~~~lt~ 100 (232)
+.|+....++...|..+ +.....+... . .+.....+..++......+...|..|+.... ......+.
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~ 82 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 35777777777655554 3333333331 0 1112234445666666667777777765421 23456788
Q ss_pred HHHHHHHHHHHHHHHHHHch
Q 026817 101 EELEARSDLVAALKDRIEGI 120 (232)
Q Consensus 101 ~El~rRr~~V~~l~~~i~~l 120 (232)
.+..-|+..+..|..++..+
T Consensus 83 ~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887654
No 14
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.35 E-value=50 Score=29.95 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHchhhhhhh
Q 026817 72 EIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 72 eir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
..+..|+.|=.+|..-.+.+..........|-..|..|...+...+..|...+..
T Consensus 71 ~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee 125 (309)
T PF09728_consen 71 LAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666655544222344567788899999999999999999988763
No 15
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.61 E-value=97 Score=27.00 Aligned_cols=172 Identities=17% Similarity=0.213 Sum_probs=94.3
Q ss_pred HHHHHhhhhcCChhhcccCCCCCCCchhh---hHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHH
Q 026817 10 VDAICKKYDKYDVDKQKELNVYGDDAFAR---LYGVVQADLDAALQKSEAAATEKNR-ATAVAMNAEIRRTKARLLEEVA 85 (232)
Q Consensus 10 ~~~~~~k~~~~~~~~~~~~~~~~~DPF~~---~~~~v~~ei~~~l~~a~~~~~~~~~-~~~~~~~aeir~~l~~L~~~L~ 85 (232)
+|-.|-+|.|.-+..+++ .+...=||.- .+..+..||+.+|..+......-+. +..++.++-+-.+|....+=|.
T Consensus 21 ld~kL~syskl~as~~gg-~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILq 99 (231)
T KOG3208|consen 21 LDSKLVSYSKLGASTHGG-YDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQ 99 (231)
T ss_pred HHHHHHHHHHHhcccCCC-CCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHH
Confidence 566788899988885554 2223346655 6688899999999887766553222 1222233344445555555555
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHchhhhhhhcccccCCCCCCCCCCCCccCCCCCCCCCcchhhhchhhh
Q 026817 86 KLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESS 165 (232)
Q Consensus 86 dL~~~~~~~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 165 (232)
+....-.+.+..+. -+++|..+....+..+...+ .. .|...+
T Consensus 100 dy~qef~rir~n~~--a~~e~~~Ll~s~~~~~~~~~------------------------~~--~~~~~~---------- 141 (231)
T KOG3208|consen 100 DYTQEFRRIRSNID--AKRERESLLESVRADISSYP------------------------SA--SGFNRG---------- 141 (231)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhccCC------------------------cc--CCCchH----------
Confidence 55443121111111 12233333222222110000 00 011100
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc--cccchh
Q 026817 166 GFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS--FVGISQ 227 (232)
Q Consensus 166 ~~~q~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~--~~~~~~ 227 (232)
+++++| -.+|+.=...|..+=.+|.+=.+-+..|..+|..+...|-.+. |.+|.|
T Consensus 142 ------e~~lkE-~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~ 198 (231)
T KOG3208|consen 142 ------EMYLKE-HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQ 198 (231)
T ss_pred ------HHHHHH-hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHH
Confidence 222223 3467777777888888888888889999999999998887664 344443
No 16
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.38 E-value=1.6e+02 Score=26.80 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHchhhhhhhcc----cccCCCCCCCCCCCCccCCCCCCCCCcchhhhchhhhHHHHHHH
Q 026817 97 GLSKEELEARSDLVAALKDRIEGIPDGSTAAA----KQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYE 172 (232)
Q Consensus 97 ~lt~~El~rRr~~V~~l~~~i~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~q~Qq 172 (232)
..++.|.--|.++...+-.++..+...+.... ..-..+.....+-....+. .-..+++. +-+.+.|+++|.
T Consensus 129 ~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~-~~~~~dd~----d~~~~~~qe~ql 203 (305)
T KOG0809|consen 129 QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDN-TVDLPDDE----DFSDRTFQEQQL 203 (305)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccc-cccCcchh----hhhhhhHHHHHH
Confidence 47899999999999999888888876654211 0000000000000000000 00000111 111223422221
Q ss_pred -------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhccc
Q 026817 173 -------MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFV 223 (232)
Q Consensus 173 -------~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~ 223 (232)
.+.++=++..-.|-.+|..|..|=..|+.=+-+|+-++|-+|=.++.|+..
T Consensus 204 ~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~ 261 (305)
T KOG0809|consen 204 MLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVR 261 (305)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhh
Confidence 233455777889999999999999999999999999999999999998753
No 17
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=55.42 E-value=25 Score=26.69 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026817 165 SGFRQEYEMRRMKQDQGLDVIGEGLDTLKNM 195 (232)
Q Consensus 165 ~~~~q~Qq~~m~eQD~~LD~Is~~v~~Lk~~ 195 (232)
+.+...|-.+|..|-+.+|.||.+|+.|.+-
T Consensus 81 q~Lm~rQN~mm~~qqqsidslsksvgklahk 111 (121)
T PF10669_consen 81 QSLMNRQNNMMKQQQQSIDSLSKSVGKLAHK 111 (121)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456778889999999999999999988653
No 18
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=54.69 E-value=54 Score=25.05 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q 026817 177 KQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVIL 219 (232)
Q Consensus 177 eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~ 219 (232)
.|-++++.|...|..++++=.....|+..|+..|+-+...+..
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888888888888887777665543
No 19
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.69 E-value=1.6e+02 Score=25.60 Aligned_cols=86 Identities=10% Similarity=0.179 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhhhhcCChhhcccCC----------------CCCCCchhhhHHHHHHHHHH---HHHHHHHHHhhhhh
Q 026817 3 VIDLITRVDAICKKYDKYDVDKQKELN----------------VYGDDAFARLYGVVQADLDA---ALQKSEAAATEKNR 63 (232)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~~~~~~~~~----------------~~~~DPF~~~~~~v~~ei~~---~l~~a~~~~~~~~~ 63 (232)
|-.+...+..|+.+-..|.......+. +...| |...+..+..|+.. +|.....++.. +.
T Consensus 96 i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~-f~~~~~~Ae~El~~A~~LL~~v~~~~~~-~~ 173 (264)
T PF06008_consen 96 IQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD-FTPQRQNAEDELKEAEDLLSRVQKWFQK-PQ 173 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHhh-HH
Confidence 456778888999999999882111100 01223 44444444444433 23344443321 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026817 64 ATAVAMNAEIRRTKARLLEEVAKLQRL 90 (232)
Q Consensus 64 ~~~~~~~aeir~~l~~L~~~L~dL~~~ 90 (232)
.....+...|+..|..+...|.||...
T Consensus 174 ~~~~~l~~~i~~~L~~~~~kL~Dl~~~ 200 (264)
T PF06008_consen 174 QENESLAEAIRDDLNDYNAKLQDLRDL 200 (264)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333347888899999999999865
No 20
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=51.22 E-value=1.6e+02 Score=27.33 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCHH-HHHHHHHHHHHHHHHHHchhh
Q 026817 72 EIRRTKARLLEEVAKLQRLAFKKVKGLSKE-ELEARSDLVAALKDRIEGIPD 122 (232)
Q Consensus 72 eir~~l~~L~~~L~dL~~~~~~~~~~lt~~-El~rRr~~V~~l~~~i~~l~~ 122 (232)
+....|..|.++|+..+.........+|.+ =+.+-+.-+..|+.++.+|.=
T Consensus 298 ~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDV 349 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 444556666666666654322233334333 367788888888888887753
No 21
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=47.93 E-value=1.8e+02 Score=24.88 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhcCChh
Q 026817 5 DLITRVDAICKKYDKYDVD 23 (232)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~ 23 (232)
.|=..++.++.||..|-+.
T Consensus 19 ~lk~~v~~~~~~Y~~~vvT 37 (215)
T PF07083_consen 19 ELKAEVDEAVEKYKGYVVT 37 (215)
T ss_pred HHHHHHHHHHHHhCCcccC
Confidence 3556789999999877554
No 22
>KOG4746 consensus Small nuclear RNA activating complex (SNAPc), subunit SNAP43 [RNA processing and modification]
Probab=44.86 E-value=88 Score=29.61 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhh--------------------cCChh-hcccCCCCC--CCchhhhHHHHHHHHHHHHHHHHHHHh
Q 026817 7 ITRVDAICKKYD--------------------KYDVD-KQKELNVYG--DDAFARLYGVVQADLDAALQKSEAAAT 59 (232)
Q Consensus 7 ~~~~~~~~~k~~--------------------~~~~~-~~~~~~~~~--~DPF~~~~~~v~~ei~~~l~~a~~~~~ 59 (232)
|-+..+||+||- +|+++ +-++.++-+ .|||-.|...+..+|..-+...-..++
T Consensus 133 i~da~a~~~kLl~~ka~k~~AF~~t~dP~~~k~~~~d~k~~~v~~~~nlndP~~rvkaLvesdv~~~l~~IH~~Y~ 208 (423)
T KOG4746|consen 133 IYDAYAICQKLLLDKAFKEVAFRFTADPYLFKRYDTDEKYHRVETLANLNDPLQRVKALVESDVFDELGVIHLEYS 208 (423)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhhccCHHHHHhhccccccccccccccccChHHHHHHHHhhHHHHHHhhHHHHHH
Confidence 345667777776 36666 445666555 599999988888888776655554454
No 23
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.30 E-value=2.7e+02 Score=25.88 Aligned_cols=16 Identities=6% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhcCC
Q 026817 6 LITRVDAICKKYDKYD 21 (232)
Q Consensus 6 ~~~~~~~~~~k~~~~~ 21 (232)
|=.|+..|++|++...
T Consensus 266 i~~rl~~L~~~~~~l~ 281 (388)
T PF04912_consen 266 IERRLKSLLSELEELA 281 (388)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4478999999998865
No 24
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=43.19 E-value=1.1e+02 Score=21.26 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHch
Q 026817 41 GVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGI 120 (232)
Q Consensus 41 ~~v~~ei~~~l~~a~~~~~~~~~~~~~~~~aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V~~l~~~i~~l 120 (232)
..+.++|...+..+....... -...+ .++...|..+.+-|..++-. ...+++.+-..=..-|...+.++..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~---r~~~i-~~~e~~l~ea~~~l~qMe~E----~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQ---RKSLI-REIERDLDEAEELLKQMELE----VRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHH---HHHHH-HHHHHHHHHHHHHHHHHHHH----HCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccChHH---HHHHH-HHHHHHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665544322110 01122 25555566666666666533 22456666666666677777777776
Q ss_pred hhhh
Q 026817 121 PDGS 124 (232)
Q Consensus 121 ~~~~ 124 (232)
+..+
T Consensus 74 k~~l 77 (79)
T PF05008_consen 74 KKEL 77 (79)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 25
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=41.87 E-value=1.2e+02 Score=25.72 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=63.0
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh--ccCCCHHHHH
Q 026817 28 LNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLA-FKK--VKGLSKEELE 104 (232)
Q Consensus 28 ~~~~~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~~~~~~~~aeir~~l~~L~~~L~dL~~~~-~~~--~~~lt~~El~ 104 (232)
..+.-.||+... |=.-+|+...+..|..+.. + .++++.|..+.++|=+|-..+ ... ..+|+++.+.
T Consensus 23 ~rV~Kd~~rVea-yGtlDElNs~IG~A~~~~~-------~---~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~ 91 (184)
T COG2096 23 GRVSKDSPRVEA-YGTLDELNSFIGLARALLK-------D---EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVK 91 (184)
T ss_pred ceecCCCceeee-eccHHHHHHHHHHHHHhCC-------H---HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHH
Confidence 346667999665 4445799998887776543 1 378888888898888886431 222 2469999999
Q ss_pred HHHHHHHHHHHHHHchhhhhh
Q 026817 105 ARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 105 rRr~~V~~l~~~i~~l~~~~~ 125 (232)
..+.++.....++..++..+-
T Consensus 92 ~LE~~id~y~~~l~~l~~FiL 112 (184)
T COG2096 92 RLEKRIDAYNAELPPLKSFVL 112 (184)
T ss_pred HHHHHHHHHHhcCCCcceeec
Confidence 999999998888877776643
No 26
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=41.39 E-value=1.7e+02 Score=22.77 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hccCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817 72 EIRRTKARLLEEVAKLQRLAFK--KVKGLSKEELEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 72 eir~~l~~L~~~L~dL~~~~~~--~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
++......+...|..|+..... ..+ +..+.+.|+..+..|..++..+-..|.
T Consensus 52 ~~~~~~~~ik~~lk~l~~~~~~~~~~~--~s~~~r~~~~q~~~L~~~f~~~m~~fq 105 (151)
T cd00179 52 EIKKLAKEIKGKLKELEESNEQNEALN--GSSVDRIRKTQHSGLSKKFVEVMTEFN 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC--CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666543211 111 556788899999999998877766665
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.22 E-value=1.9e+02 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhh
Q 026817 102 ELEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 102 El~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
=+..+...|..|+..+..|+..+.
T Consensus 90 llGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 90 LLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHH
Confidence 356677788899999988888764
No 28
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=36.98 E-value=3.3e+02 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026817 171 YEMRRMKQDQGLDVIGEGLDTLKNMAHDM 199 (232)
Q Consensus 171 Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~I 199 (232)
.+..++.-|.....|..++..+..+-..|
T Consensus 256 f~~eL~kf~~~~~~l~~~~~~Q~~ll~~i 284 (353)
T cd09236 256 FDKRLAKYDKDLDAVSEEAQEQEEILQQI 284 (353)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444433
No 29
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.51 E-value=2.1e+02 Score=22.56 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026817 102 ELEARSDLVAALKDR 116 (232)
Q Consensus 102 El~rRr~~V~~l~~~ 116 (232)
|+.+|...+..|+.+
T Consensus 134 e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 134 ELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 30
>PRK08026 flagellin; Validated
Probab=36.00 E-value=1e+02 Score=30.33 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=43.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHhhhhhhhccccch
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEI----------DRQVPMMDEIDEKVILYSFVGIS 226 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL----------~~Q~~mLDdLd~~mD~~~~~~~~ 226 (232)
.-+++-.|-.|+.|+..++|+|+++...++.- .+=..|+++|+.-.+.|+|-|+.
T Consensus 72 ~s~lqtAE~aL~~i~d~LqRmrELaVqAaNGT~S~~DR~aiq~Ei~qL~~eI~~ia~~T~fNG~~ 136 (529)
T PRK08026 72 ISVAQTTEGALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVN 136 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCEE
Confidence 35788899999999999999999998665421 12246888999899999999873
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.78 E-value=3.3e+02 Score=24.59 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=14.1
Q ss_pred hccCCCHHHHHHHHHHHHHHHHH
Q 026817 94 KVKGLSKEELEARSDLVAALKDR 116 (232)
Q Consensus 94 ~~~~lt~~El~rRr~~V~~l~~~ 116 (232)
...+.|..|+.+-+.-+..|...
T Consensus 269 ~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 269 ECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHH
Confidence 34567777776666655555543
No 32
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.92 E-value=3.3e+02 Score=23.61 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=22.2
Q ss_pred HHhhhhcCChhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 026817 13 ICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAA 57 (232)
Q Consensus 13 ~~~k~~~~~~~~~~~~~~~~~DPF~~~~~~v~~ei~~~l~~a~~~ 57 (232)
|++++.+|---..+..-.+..||+ ....-.-.+++..|.+++..
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~-~~l~Q~ird~~~~l~~ar~~ 46 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPE-KMLEQAIRDMESELAKARQA 46 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443334567999 33333334555556555543
No 33
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=32.28 E-value=5.2e+02 Score=25.72 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=18.7
Q ss_pred cCCCHHHHHHHH------HHHHHHHHHHHchhh
Q 026817 96 KGLSKEELEARS------DLVAALKDRIEGIPD 122 (232)
Q Consensus 96 ~~lt~~El~rRr------~~V~~l~~~i~~l~~ 122 (232)
..|+|.|..+|. +.|+.|..+++.+..
T Consensus 111 ~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 111 EKLDPKEKEKRDTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899988875 346667777766655
No 34
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=31.88 E-value=3.4e+02 Score=23.49 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=43.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817 175 RMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYS 221 (232)
Q Consensus 175 m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~ 221 (232)
-..|++=-+.|..-...||+.+.++++=|..-+.+|+.....+|+..
T Consensus 162 ~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~ 208 (251)
T PF09753_consen 162 RNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNL 208 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999753
No 35
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.34 E-value=2e+02 Score=20.63 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHhhhhhhhcc
Q 026817 180 QGLDVIGEGLDTLKNMAHDMNEE----IDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 180 ~~LD~Is~~v~~Lk~~a~~Ig~E----L~~Q~~mLDdLd~~mD~~~~ 222 (232)
+-|+.+..++..+......|-.| +...|.++++++..++..+.
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555555555555444444444 45677778877777776654
No 36
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=30.24 E-value=1.1e+02 Score=26.96 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 026817 180 QGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILY 220 (232)
Q Consensus 180 ~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~ 220 (232)
+.|-.|..+|..|-++=..|.+++-+|.++.|-++..+...
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~ 225 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDA 225 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhH
Confidence 34678999999999999999999999999999999877543
No 37
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=30.13 E-value=79 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026817 184 VIGEGLDTLKNMAHDMNEEIDRQ 206 (232)
Q Consensus 184 ~Is~~v~~Lk~~a~~Ig~EL~~Q 206 (232)
.|+.-|+.|++++..+|++|+.+
T Consensus 2 ~i~~~~~~L~~~~~~~~q~vq~~ 24 (71)
T PRK15344 2 DIAQLVDMLSHMAHQAGQAINDK 24 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999875
No 38
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=29.89 E-value=3e+02 Score=22.33 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817 72 EIRRTKARLLEEVAKLQRL--------AFKKVKGLSKEELEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 72 eir~~l~~L~~~L~dL~~~--------~~~~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
.++..+..+...|..|..- ..+...|++..++...+.||..|...|..-...++
T Consensus 27 k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~ 88 (148)
T COG2882 27 KIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLS 88 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666431 23355689999999999999999999988876654
No 39
>PTZ00059 dynein light chain; Provisional
Probab=29.17 E-value=43 Score=24.65 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhhccccchhhccC
Q 026817 193 KNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVG 231 (232)
Q Consensus 193 k~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~~~~~~~~~ 231 (232)
+++|..|-.|+| -.|-+.-+||||
T Consensus 37 kdiA~~IK~~fD---------------~~yg~~WhciVG 60 (90)
T PTZ00059 37 KDIAAYIKKEFD---------------KKYNPTWHCIVG 60 (90)
T ss_pred HHHHHHHHHHHH---------------hhcCCCCEEEEe
Confidence 778888888887 347788999998
No 40
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=28.06 E-value=54 Score=19.09 Aligned_cols=19 Identities=21% Similarity=0.662 Sum_probs=8.6
Q ss_pred CCCCCchhhhHHHHHHHHHH
Q 026817 30 VYGDDAFARLYGVVQADLDA 49 (232)
Q Consensus 30 ~~~~DPF~~~~~~v~~ei~~ 49 (232)
+++.|||...|.-++ +|++
T Consensus 3 is~~d~f~eFY~rlk-~Ike 21 (28)
T PF12108_consen 3 ISGGDPFSEFYERLK-EIKE 21 (28)
T ss_dssp --S--HHHHHHHHHH-HHHH
T ss_pred CCCCChHHHHHHHHH-HHHH
Confidence 467799966554443 4543
No 41
>PRK06819 flagellin; Validated
Probab=28.00 E-value=91 Score=29.21 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=42.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----H------HHhhhHHHHhhhhhhhccccc
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEI----D------RQVPMMDEIDEKVILYSFVGI 225 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL----~------~Q~~mLDdLd~~mD~~~~~~~ 225 (232)
.-+++-.|..|+.|+..+.|+|+++...++-- + +=+.|+++|..-+..|+|-|.
T Consensus 72 is~Lqtae~aL~~i~~iLqR~reLavqAaNgT~s~~dR~ai~~Ei~qL~~qI~~ian~t~fnG~ 135 (376)
T PRK06819 72 ISIAQTTEGALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGV 135 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCe
Confidence 35777899999999999999999998764311 1 224688888888888999886
No 42
>PRK12804 flagellin; Provisional
Probab=27.11 E-value=2.3e+02 Score=25.27 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-------HH----HHHhhhHHHHhhhhhhhccccc
Q 026817 170 EYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNE-------EI----DRQVPMMDEIDEKVILYSFVGI 225 (232)
Q Consensus 170 ~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~-------EL----~~Q~~mLDdLd~~mD~~~~~~~ 225 (232)
...-.++-.|..|..|...+.++|+++...++ +. .+=..|++.|..-+..++|-|.
T Consensus 68 ~~~s~l~~ad~~l~~i~~~l~r~rel~v~a~n~gt~s~~dr~~i~~E~~~l~~~i~~~an~~~~nG~ 134 (301)
T PRK12804 68 DGISLIQTAEGALTETHSILQRVRELVVQAGNTGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGK 134 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 34567888999999999999999999988865 22 2335678888888887788775
No 43
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=26.83 E-value=2.6e+02 Score=20.51 Aligned_cols=53 Identities=9% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817 72 EIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 72 eir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
++....+.+...|..|++..... ...+.++.+.|+..+..|..++..+-..|.
T Consensus 54 ~~~~~~~~i~~~lk~l~~~~~~~-~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq 106 (117)
T smart00503 54 DIKRLAKEIRAKLKELEKENLEN-RASGSASDRTRKAQTEKLRKKFKEVMNEFQ 106 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhh-cccCCHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554432111 112456778889999999988876665554
No 44
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=26.35 E-value=2.4e+02 Score=23.18 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh------hccCCCHHHHHHHHHHHHHHHHHHHchhhhhhhc
Q 026817 71 AEIRRTKARLLEEVAKLQRLAFK------KVKGLSKEELEARSDLVAALKDRIEGIPDGSTAA 127 (232)
Q Consensus 71 aeir~~l~~L~~~L~dL~~~~~~------~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~~ 127 (232)
++++..|+.|+..+.+|.....- .....++.|++- .|..++.++..++..+...
T Consensus 75 ~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~---~veel~eqV~el~~i~emv 134 (157)
T COG3352 75 QDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG---IVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999865211 111245555554 7999999999998887643
No 45
>PRK12808 flagellin; Provisional
Probab=26.24 E-value=1.3e+02 Score=29.16 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHhhhhhhhccccc
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEI----------DRQVPMMDEIDEKVILYSFVGI 225 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL----------~~Q~~mLDdLd~~mD~~~~~~~ 225 (232)
.-+++-.|-.|..|+..++|+|+++...++.- .+=..|+++|..-+..|+|-|.
T Consensus 70 iS~LQTAEgAL~eIsdILQRmRELAVQAANGT~S~~DRaAIq~EI~qLleeI~~IAnnT~FNG~ 133 (476)
T PRK12808 70 MSLIRTADSAMNSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDK 133 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCe
Confidence 36788999999999999999999987654421 1224688888888888888876
No 46
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.59 E-value=4.3e+02 Score=22.63 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026817 30 VYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRL 90 (232)
Q Consensus 30 ~~~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~~~~~~~~aeir~~l~~L~~~L~dL~~~ 90 (232)
+.++|+|+..|+...+++...+.+++.+.... |. ...-++..-..+.|.+..+++.
T Consensus 72 LTG~~~yL~py~~a~~~~~~~~~~l~~l~~d~-p~----~~~~l~~l~~~i~~~l~~~~~~ 127 (207)
T COG5278 72 LTGNDEYLEPYEEATEELDQKLEELRALTADD-PE----LLESLDDLEPLIQWKLAEADET 127 (207)
T ss_pred ecCCHhhhhHHHHHHHHHHHHHHHHHHhcCCC-HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999988888776521 11 1113333344466667766665
No 47
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.26 E-value=5.1e+02 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHchhhh
Q 026817 103 LEARSDLVAALKDRIEGIPDG 123 (232)
Q Consensus 103 l~rRr~~V~~l~~~i~~l~~~ 123 (232)
|++|+.-+..++.++..|.+.
T Consensus 142 ierrk~ElEr~rkRle~Lqsi 162 (338)
T KOG3647|consen 142 IERRKAELERTRKRLEALQSI 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999988887654
No 48
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.75 E-value=3.5e+02 Score=21.34 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 026817 36 FARLYGVVQADLDAALQK 53 (232)
Q Consensus 36 F~~~~~~v~~ei~~~l~~ 53 (232)
|-++.|.++.-+..+...
T Consensus 30 ~sD~M~vTrr~m~~A~~~ 47 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVAS 47 (126)
T ss_pred hhHHHHHHHHhHHHHHHH
Confidence 444557777666665433
No 49
>PRK08869 flagellin; Reviewed
Probab=24.53 E-value=1.4e+02 Score=27.77 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHhhhhhhhccccc
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEI----------DRQVPMMDEIDEKVILYSFVGI 225 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL----------~~Q~~mLDdLd~~mD~~~~~~~ 225 (232)
.-+++-.|..|+.|...+.|+|+++...++.- .+=..|+++|..-+..++|-|.
T Consensus 71 ~s~lq~ae~aL~~i~~~L~r~reLavqa~Ngt~s~~dr~ai~~E~~~L~~~i~~ian~t~~nG~ 134 (376)
T PRK08869 71 ISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGT 134 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcCCe
Confidence 46778899999999999999999998775421 1224688888888888888876
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.50 E-value=7.7e+02 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026817 71 AEIRRTKARLLEEVAKLQR 89 (232)
Q Consensus 71 aeir~~l~~L~~~L~dL~~ 89 (232)
.++|+.|..+.+.|..++.
T Consensus 1235 ~~lr~~l~~~~e~L~~~E~ 1253 (1758)
T KOG0994|consen 1235 ESLRRQLQALTEDLPQEEE 1253 (1758)
T ss_pred HHHHHHHHHHHhhhhhhhh
Confidence 3677777777777766664
No 51
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.34 E-value=5.8e+02 Score=26.84 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------hhhccCCCHHHHHHHHHHHHHHHHHHHchhhhhhh
Q 026817 67 VAMNAEIRRTKARLLEEVAKLQRLA---------FKKVKGLSKEELEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 67 ~~~~aeir~~l~~L~~~L~dL~~~~---------~~~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
..++ -+|..+.-|++...+|+-++ .+.+...=..|+..-..+|..+..+++.++.....
T Consensus 242 q~lt-p~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~ 309 (1265)
T KOG0976|consen 242 QTLT-PLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTR 309 (1265)
T ss_pred hhhh-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56777777777777776432 11222233457888888899999999888877543
No 52
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.50 E-value=3.7e+02 Score=21.19 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHch
Q 026817 103 LEARSDLVAALKDRIEGI 120 (232)
Q Consensus 103 l~rRr~~V~~l~~~i~~l 120 (232)
+..=...|..|..++..|
T Consensus 105 v~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 105 VDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344455555555444
No 53
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=23.18 E-value=31 Score=25.94 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhccccchhhccC
Q 026817 178 QDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVG 231 (232)
Q Consensus 178 QD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~~~~~~~~~ 231 (232)
|++--|.|+.--+.|=+++..|..|-+----+.-. -+|+.--|..+|+||+|
T Consensus 10 qeelr~llseK~~ELydL~~eI~kETeFdillfS~--igv~~GD~~~ss~~alG 61 (100)
T PF10655_consen 10 QEELRDLLSEKNGELYDLANEIDKETEFDILLFST--IGVSNGDFISSSHCALG 61 (100)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcccceeeeeeeee--eccccCccccccchhhc
Confidence 55666778888888888888888876543333332 24555566677999998
No 54
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.19 E-value=1.8e+02 Score=16.95 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHH
Q 026817 82 EEVAKLQRLAFKKVKGLSKEELEARSDLV 110 (232)
Q Consensus 82 ~~L~dL~~~~~~~~~~lt~~El~rRr~~V 110 (232)
..|..|... ....-||++|-.+++..+
T Consensus 3 ~~L~~L~~l--~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKEL--YDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHH--HHcCCCCHHHHHHHHHHH
Confidence 345555443 244569999998888755
No 55
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.96 E-value=2.6e+02 Score=28.42 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhcCChhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 026817 5 DLITRVDAICKKYDKYDVDKQKELNVYGDDAFARLYGVVQADLDAALQKSEAAAT 59 (232)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~DPF~~~~~~v~~ei~~~l~~a~~~~~ 59 (232)
+|..|-..|++||.+...+...=..--.+|-|..+|--+-.|+...+........
T Consensus 239 ~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~ 293 (683)
T PF08580_consen 239 ELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLS 293 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999998888555333346799999999988888887766665543
No 56
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=20.81 E-value=1.6e+02 Score=18.63 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=16.1
Q ss_pred CCHHHHHHH-HHHHHHHHHHHHchh
Q 026817 98 LSKEELEAR-SDLVAALKDRIEGIP 121 (232)
Q Consensus 98 lt~~El~rR-r~~V~~l~~~i~~l~ 121 (232)
=++.|+.+| +++|...+.+++.|.
T Consensus 17 P~ESELskr~rrLIRaa~k~lealc 41 (44)
T PF08134_consen 17 PTESELSKRIRRLIRAARKQLEALC 41 (44)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777666 566777777776654
No 57
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.52 E-value=80 Score=25.20 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhcCChhhccc
Q 026817 5 DLITRVDAICKKYDKYDVDKQKE 27 (232)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~~~~~ 27 (232)
.+..||=.++|+|+|.+|++.+.
T Consensus 53 ~v~~RVl~VVk~~dki~~~k~~~ 75 (131)
T KOG1748|consen 53 EVVDRVLDVVKKFDKIDPSKLTT 75 (131)
T ss_pred HHHHHHHHHHHHhhcCCccccch
Confidence 56789999999999999998553
No 58
>PRK12803 flagellin; Provisional
Probab=20.46 E-value=2.1e+02 Score=26.30 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=42.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH------H----HHHhhhHHHHhhhhhhhccccc
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEE------I----DRQVPMMDEIDEKVILYSFVGI 225 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~E------L----~~Q~~mLDdLd~~mD~~~~~~~ 225 (232)
.-+++-.|-.|..+...+.|+|+++...++- . .+=..|++.|..-+..|+|-|+
T Consensus 70 ~s~lqtae~aL~~i~~~LqrirELavqA~Ngt~s~~dR~ai~~Ei~qL~~~i~~ian~t~fnG~ 133 (335)
T PRK12803 70 INFIQTTEGNLNEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQM 133 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCe
Confidence 4678899999999999999999999776431 1 1124688888888888899887
No 59
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.11 E-value=4.3e+02 Score=22.51 Aligned_cols=50 Identities=10% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817 71 AEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 71 aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
.++...|.--+.+|.+|+.. . .-...-+..=++=|..++.+|..|...+.
T Consensus 135 ~e~EqLL~YK~~ql~~~~~~--~---~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 135 REFEQLLDYKERQLRELEEG--R---SKSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHhhhcc--C---CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555566666431 1 12222244445667777777777777664
Done!