Query 026817
Match_columns 232
No_of_seqs 138 out of 402
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.6 7.1E-16 2.4E-20 112.3 5.5 56 167-222 6-61 (82)
2 1gl2_D Syntaxin 8, vesicle tra 99.5 1.2E-14 4.2E-19 101.2 5.6 50 173-222 2-51 (65)
3 4dnd_A Syntaxin-10, SYN10; str 99.5 1.3E-13 4.3E-18 108.6 11.3 89 32-125 25-129 (130)
4 1n7s_D SNAP-25A; neuronal snar 99.4 6E-13 2.1E-17 92.9 6.5 49 174-222 4-52 (66)
5 1sfc_D Protein (SNAP-25B), pro 99.4 5.7E-13 2E-17 98.0 6.7 51 172-222 21-71 (87)
6 1l4a_D S-SNAP25 fusion protein 99.3 2.1E-12 7.2E-17 94.9 5.6 50 173-222 23-72 (87)
7 2c5k_T Syntaxin TLG1, T-snare 99.3 6.6E-12 2.2E-16 93.7 6.5 88 32-125 4-92 (95)
8 3b5n_D Protein transport prote 99.2 3.7E-11 1.3E-15 83.3 6.7 49 174-222 4-52 (64)
9 1dn1_B Syntaxin 1A, syntaxin b 96.8 0.036 1.2E-06 47.8 14.6 187 32-222 25-242 (267)
10 3hd7_B Syntaxin-1A; membrane p 96.8 0.0033 1.1E-07 47.4 6.8 50 173-222 14-63 (109)
11 2xhe_B Syntaxin1; exocytosis, 95.9 0.053 1.8E-06 46.8 10.4 147 69-222 93-259 (279)
12 1jth_B Syntaxin 1A; coiled-coi 95.0 0.081 2.8E-06 37.0 6.8 49 174-222 4-52 (77)
13 3b5n_B Protein SSO1; snare com 94.5 0.14 4.9E-06 35.0 6.8 49 174-222 4-52 (69)
14 1gl2_B Syntaxin 7; membrane pr 94.5 0.083 2.8E-06 35.8 5.6 47 176-222 5-51 (65)
15 2nps_B Syntaxin 13, vesicle-as 94.5 0.094 3.2E-06 36.1 5.9 44 179-222 5-48 (71)
16 1sfc_B Protein (syntaxin 1A), 93.9 0.2 6.8E-06 35.6 6.8 50 173-222 14-63 (83)
17 1n7s_B Syntaxin 1A; neuronal s 93.8 0.24 8.2E-06 33.7 6.8 49 174-222 6-54 (68)
18 3c98_B Syntaxin-1A; protein co 91.3 5.2 0.00018 33.0 13.5 50 173-222 205-254 (279)
19 1ez3_A Syntaxin-1A; three heli 91.1 3.7 0.00013 30.5 12.0 58 69-126 55-113 (127)
20 1s94_A S-syntaxin; three helix 88.9 4.1 0.00014 32.4 10.4 94 33-126 34-144 (180)
21 1n7s_C SNAP-25A; neuronal snar 80.8 12 0.0004 26.1 8.2 55 167-221 7-64 (79)
22 1g6u_A Domain swapped dimer; d 79.5 6.7 0.00023 24.0 5.6 42 78-125 3-44 (48)
23 2k48_A Nucleoprotein; viral pr 71.3 25 0.00086 25.9 8.0 24 103-126 77-100 (107)
24 1l4a_C S-SNAP25 fusion protein 68.2 28 0.00097 24.4 7.8 54 168-221 12-68 (83)
25 2l3l_A Tubulin-specific chaper 62.6 38 0.0013 25.0 7.7 74 34-124 34-107 (111)
26 1nhl_A Synaptosomal-associated 53.7 27 0.00091 22.3 4.9 32 189-220 9-40 (54)
27 3ghg_A Fibrinogen alpha chain; 36.8 1.1E+02 0.0039 28.7 7.9 16 5-20 61-76 (562)
28 3v47_C Flagellin; innate immun 35.7 60 0.002 29.6 5.9 55 172-226 31-95 (425)
29 3b5n_C Protein transport prote 30.6 1.2E+02 0.0042 20.3 6.3 43 178-220 7-52 (70)
30 3r6n_A Desmoplakin; spectrin r 30.6 3.1E+02 0.011 24.9 10.6 23 177-199 246-268 (450)
31 3edu_A Beta-I spectrin, spectr 29.2 2E+02 0.0069 22.4 7.7 20 71-90 77-96 (218)
32 1vcs_A Vesicle transport throu 27.8 1.7E+02 0.0057 20.9 7.6 83 35-125 9-91 (102)
33 2ic6_A Nucleocapsid protein; h 27.7 90 0.0031 21.7 4.4 25 102-126 46-70 (78)
34 2kwh_A RAla-binding protein 1; 25.3 57 0.0019 21.2 2.8 21 198-218 7-27 (56)
35 4fi5_A Nucleoprotein; structur 24.9 98 0.0034 22.9 4.4 25 102-126 63-87 (113)
36 3hd7_B Syntaxin-1A; membrane p 24.8 2E+02 0.0067 20.7 8.2 61 99-203 12-72 (109)
37 1io1_A Phase 1 flagellin; beta 23.2 85 0.0029 28.1 4.6 55 172-226 19-83 (398)
38 2yfv_C SCM3, KLLA0F05115P; cel 23.1 39 0.0013 22.5 1.7 14 8-21 36-49 (63)
39 1fio_A SSO1 protein; four heli 22.1 2.1E+02 0.0071 22.1 6.4 23 103-125 79-101 (196)
40 1yo3_A Dynein light chain 1; s 22.0 78 0.0027 22.9 3.4 25 192-231 48-72 (102)
41 2d4x_A Flagellar HOOK-associat 21.8 2.1E+02 0.0073 23.1 6.6 51 172-225 32-95 (248)
42 2ic9_A Nucleocapsid protein; h 21.8 1.3E+02 0.0044 21.7 4.4 25 102-126 46-70 (96)
43 3k8w_A Flagellin homolog; flag 21.6 1.8E+02 0.0063 25.4 6.3 50 173-225 53-115 (326)
44 1ucu_A Phase 1 flagellin; flag 21.0 1.8E+02 0.0062 26.7 6.5 51 173-226 72-135 (494)
45 3rjs_A Dynein light chain moto 20.7 1.1E+02 0.0037 21.3 3.9 24 193-231 36-59 (89)
46 1a93_B MAX protein, coiled coi 20.5 55 0.0019 19.1 1.8 12 201-212 17-28 (34)
47 2d9d_A BAG family molecular ch 20.3 1.9E+02 0.0064 20.3 4.9 26 33-62 33-58 (89)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=7.1e-16 Score=112.34 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 167 FRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 167 ~~q~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
+.|+|+++|++||++||.|+.+|++||+||..||+||+.||.|||+|+++||+|+.
T Consensus 6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~ 61 (82)
T 2nps_D 6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQS 61 (82)
T ss_dssp ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999874
No 2
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.52 E-value=1.2e-14 Score=101.21 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=43.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
++|++||++||.|+.+|++||+||..||+||+.||.|||+|+++||+++.
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~ 51 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDE 51 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999874
No 3
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=99.51 E-value=1.3e-13 Score=108.62 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=73.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHhhh--h---h------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhc
Q 026817 32 GDDAFARLYGVVQADLDAALQKSEAAATEK--N---R------ATAVAMNAEIRRTKARLLEEVAKLQRLA-----FKKV 95 (232)
Q Consensus 32 ~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~--~---~------~~~~~~~aeir~~l~~L~~~L~dL~~~~-----~~~~ 95 (232)
..||| |.|++||+++++++++++..- . + ...|+.+ ||+..|++|+|+|+||++++ .+.+
T Consensus 25 ~~DPF----~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~-EL~~~l~sie~dLeDLe~sI~ivE~np~k 99 (130)
T 4dnd_A 25 LEDPF----FVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTN-ELRNGLRSIEWDLEDLEETIGIVEANPGK 99 (130)
T ss_dssp --CCH----HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCCCc----HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence 57999 788999999999999888731 1 1 1346555 99999999999999999873 3378
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817 96 KGLSKEELEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 96 ~~lt~~El~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
|+|++.|+.+|+.||.+++.++..|+..++
T Consensus 100 F~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 100 FKLPAGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 4
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.39 E-value=6e-13 Score=92.85 Aligned_cols=49 Identities=33% Similarity=0.386 Sum_probs=46.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
+..+||+.||.|+.+|++||+||..||+||+.||.|||+|+.+||+++.
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~ 52 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5579999999999999999999999999999999999999999999875
No 5
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.38 E-value=5.7e-13 Score=97.96 Aligned_cols=51 Identities=31% Similarity=0.384 Sum_probs=48.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
..+.++||+.||.|+.+|++||+||..||+||+.||.|||+|+.+||+++.
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~ 71 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKT 71 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 357789999999999999999999999999999999999999999999875
No 6
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.31 E-value=2.1e-12 Score=94.90 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=47.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
.+..+||+.||.|+.+|++||+||..||+||+.||+|||+|+++||++++
T Consensus 23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~ 72 (87)
T 1l4a_D 23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNES 72 (87)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999875
No 7
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=99.27 E-value=6.6e-12 Score=93.69 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=66.1
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Q 026817 32 GDDAFARLYGVVQADLDAALQKSEAAATEKNR-ATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLV 110 (232)
Q Consensus 32 ~~DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~-~~~~~~~aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V 110 (232)
+.||| |.|++++...|..++.+...++. ...|+.+ ||+..|..|+|+|.||++++...... +++||.+|+.||
T Consensus 4 s~DPF----~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~-El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v 77 (95)
T 2c5k_T 4 SEDPF----QQVVKDTKEQLNRINNYITRHNTAGDDDQEE-EIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQV 77 (95)
T ss_dssp -CCHH----HHHHHHHHHHHHHHHHHHHHTCCC--CTTHH-HHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHH
T ss_pred CCCcH----HHHHHHHHHHHHHHHHHHHHccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 56999 56666666666666666543221 1235555 99999999999999999984332222 999999999999
Q ss_pred HHHHHHHHchhhhhh
Q 026817 111 AALKDRIEGIPDGST 125 (232)
Q Consensus 111 ~~l~~~i~~l~~~~~ 125 (232)
..++.++..|+..++
T Consensus 78 ~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 78 KNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 8
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.7e-11 Score=83.32 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=45.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
+-.+||+.|+.|+..+++||+||.+||+||+.||.+||.|..++|++..
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ 52 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDI 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999999998764
No 9
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=96.81 E-value=0.036 Score=47.78 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=104.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHhh----h------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Q 026817 32 GDDAFARLYGVVQADLDAALQKSEAAATE----K------------NRATAVAMNAEIRRTKARLLEEVAKLQRLAFK-K 94 (232)
Q Consensus 32 ~~DPF~~~~~~v~~ei~~~l~~a~~~~~~----~------------~~~~~~~~~aeir~~l~~L~~~L~dL~~~~~~-~ 94 (232)
..|||+..|+.-.++|+..+........+ . .+.....+..++......+...|..|+..... .
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~ 104 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 104 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44677777777776766655544433221 0 01111223345555555666666666654221 1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHchhhhhhhcc------------cc--cCCCCCCCCCCCCccCCCCCCCCCcchhhh
Q 026817 95 VKGLSKEELEARSDLVAALKDRIEGIPDGSTAAA------------KQ--TGGGTTSASYTGIKFDTYSGGKFDDEYFQE 160 (232)
Q Consensus 95 ~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (232)
...-+..+.+-|+..+..|..++..+-..|.... +. ..++.++...-......+....|......+
T Consensus 105 ~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~ 184 (267)
T 1dn1_B 105 GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMD 184 (267)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHh
Confidence 1234567788899999999999988877765321 00 011111000000000000001111111111
Q ss_pred chhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 161 TEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 161 t~~~~~~~q~Qq~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
+.. . .+.-..+++-...+-.|..+|..|++|=..|+.=|.+|+.|||.++..|+.+..
T Consensus 185 ~~~---~-~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~ 242 (267)
T 1dn1_B 185 SSI---S-KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 242 (267)
T ss_dssp SHH---H-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCC
T ss_pred hHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111 0 111245667778899999999999999999999999999999999999988753
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.80 E-value=0.0033 Score=47.37 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=46.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
..+++.++.+..|..+|..|+++-..|+..+.+|++|||.++..|+.+..
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~ 63 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999998753
No 11
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=95.92 E-value=0.053 Score=46.83 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hc----cCCCHHHHHHHHHHHHHHHHHHHchhhhhhhcc-------cccCCCC
Q 026817 69 MNAEIRRTKARLLEEVAKLQRLAFK--KV----KGLSKEELEARSDLVAALKDRIEGIPDGSTAAA-------KQTGGGT 135 (232)
Q Consensus 69 ~~aeir~~l~~L~~~L~dL~~~~~~--~~----~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~~~-------~~~~~~~ 135 (232)
+..+|...+..+...|..|...... .. .+.+..|..-|+..+..|..++..+-..|.... +....+.
T Consensus 93 l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~ 172 (279)
T 2xhe_B 93 TMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ 172 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666654211 11 122222778899999999999988877765321 0000000
Q ss_pred CCCCCCCCccCCCCCCCCCcchhhhchhhhHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026817 136 TSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEY-------EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVP 208 (232)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~q~Q-------q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~ 208 (232)
-....+ .. ..... ....++.....|.+.+ -..+++=...+-.|..+|..|++|=..|+.=|.+|+.
T Consensus 173 ~~i~~~----~~-~~ee~--~~~~e~g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~ 245 (279)
T 2xhe_B 173 CRVVEP----SL-SDDAI--QKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGE 245 (279)
T ss_dssp CCSSCC----CC-SSTTH--HHHHHHC-----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCS
T ss_pred HHHhCC----CC-CHHHH--HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 000000 00 00000 0001111112232100 0134455678999999999999999999999999999
Q ss_pred hHHHHhhhhhhhcc
Q 026817 209 MMDEIDEKVILYSF 222 (232)
Q Consensus 209 mLDdLd~~mD~~~~ 222 (232)
|||.++..|+.+..
T Consensus 246 ~id~Ie~nv~~~~~ 259 (279)
T 2xhe_B 246 MIDRIEFSVEQSHN 259 (279)
T ss_dssp STTCHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 12
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=95.01 E-value=0.081 Score=37.01 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=43.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
.+++-.+.+..|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999999999999999999998753
No 13
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.47 E-value=0.14 Score=35.02 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
.+++-...+-.|..+|..|++|=..|+.=+.+|+.|||.++..|+.+..
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQL 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456667889999999999999999999999999999999999998753
No 14
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=94.46 E-value=0.083 Score=35.83 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=42.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 176 MKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 176 ~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
++-...+..|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus 5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999999999999999999999999998753
No 15
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=94.45 E-value=0.094 Score=36.14 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 179 DQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 179 D~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
.+.+..|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999998763
No 16
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=93.90 E-value=0.2 Score=35.56 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=45.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
..+++-...+-.|..+|..|++|=..|+.=+.+|+.|||.++..|+.+..
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35667777899999999999999999999999999999999999998753
No 17
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=93.78 E-value=0.24 Score=33.72 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=44.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 174 RRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 174 ~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
.+++-...+-.|..+|..|++|=..|..=+.+|+.|||.++..|+.+..
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999999999999999999998753
No 18
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=91.33 E-value=5.2 Score=32.98 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=45.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhcc
Q 026817 173 MRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVILYSF 222 (232)
Q Consensus 173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~ 222 (232)
..+.+-...|..|..+|..+.++-..|..-+++|+.+++.++..|+.++.
T Consensus 205 ~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~ 254 (279)
T 3c98_B 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 254 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778899999999999999999999999999999999999988754
No 19
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=91.06 E-value=3.7 Score=30.50 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHchhhhhhh
Q 026817 69 MNAEIRRTKARLLEEVAKLQRLAFK-KVKGLSKEELEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 69 ~~aeir~~l~~L~~~L~dL~~~~~~-~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
+..++......+...|..|+..... ...+-+..+.+-|+..+..|..++..+-..++.
T Consensus 55 l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~ 113 (127)
T 1ez3_A 55 LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNA 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666677777777777755222 222345667888999999999999888777753
No 20
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=88.93 E-value=4.1 Score=32.41 Aligned_cols=94 Identities=10% Similarity=0.147 Sum_probs=54.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhh----hhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc
Q 026817 33 DDAFARLYGVVQADLDAALQKSEAAATE----KNR------------ATAVAMNAEIRRTKARLLEEVAKLQRLAFK-KV 95 (232)
Q Consensus 33 ~DPF~~~~~~v~~ei~~~l~~a~~~~~~----~~~------------~~~~~~~aeir~~l~~L~~~L~dL~~~~~~-~~ 95 (232)
.|||+..|+.-.++|+..|........+ ..+ .....+..++......+...|..|++.... ..
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH 113 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5788777776666666665555433331 000 111233345666666666777777655222 11
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHchhhhhhh
Q 026817 96 KGLSKEELEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 96 ~~lt~~El~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
.+-+..+.+-|+..+..|..++..+-..|+.
T Consensus 114 ~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~ 144 (180)
T 1s94_A 114 SNKSSADLRIRKTQYSTISRKFVEVMSDYNT 144 (180)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567788999999999999998888764
No 21
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=80.78 E-value=12 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817 167 FRQEYEMRRMKQDQGLDVIGEGLD---TLKNMAHDMNEEIDRQVPMMDEIDEKVILYS 221 (232)
Q Consensus 167 ~~q~Qq~~m~eQD~~LD~Is~~v~---~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~ 221 (232)
+++.+++....+++.++.+-.++. .-.++|..+-.+|..|.+-|+.....+|..+
T Consensus 7 ~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~ 64 (79)
T 1n7s_C 7 LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHIN 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence 345566777778888888877766 4556899999999999999999888888654
No 22
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=79.55 E-value=6.7 Score=23.96 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHchhhhhh
Q 026817 78 ARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 78 ~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
..|..+|..|.+. +++|+|+..-..-+..|..++..+++.+.
T Consensus 3 aalkselqalkke------gfspeelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 3 AALKSELQALKKE------GFSPEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHT------TCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655433 78999988888888888888877776654
No 23
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=71.34 E-value=25 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHchhhhhhh
Q 026817 103 LEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 103 l~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
+.+|+.-|..++.++.+++..+..
T Consensus 77 l~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999988653
No 24
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=68.21 E-value=28 Score=24.43 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHhhhhhhhc
Q 026817 168 RQEYEMRRMKQDQGLDVIGEGLDTLKN---MAHDMNEEIDRQVPMMDEIDEKVILYS 221 (232)
Q Consensus 168 ~q~Qq~~m~eQD~~LD~Is~~v~~Lk~---~a~~Ig~EL~~Q~~mLDdLd~~mD~~~ 221 (232)
+..++++..-+++.|+..-..+.-..+ .|..=-.+|..|++-|+.++..+|.-+
T Consensus 12 q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~ 68 (83)
T 1l4a_C 12 EEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQIN 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788889988777765544 666677789999999999998888654
No 25
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=62.64 E-value=38 Score=25.01 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=55.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 026817 34 DAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAAL 113 (232)
Q Consensus 34 DPF~~~~~~v~~ei~~~l~~a~~~~~~~~~~~~~~~~aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V~~l 113 (232)
|-|..-|..-+..|...|..+ .+...+..+...|..|++.+.....=|++-++..=+.-|..|
T Consensus 34 ~~F~~~F~~~~~~Ie~~l~~~-----------------~~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L 96 (111)
T 2l3l_A 34 HFFVATFARERAAVEELLERA-----------------ESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARL 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----------------CSHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----------------chhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 567766666666777766421 133456777888889988766666669999999999999999
Q ss_pred HHHHHchhhhh
Q 026817 114 KDRIEGIPDGS 124 (232)
Q Consensus 114 ~~~i~~l~~~~ 124 (232)
+..+......+
T Consensus 97 ~~~l~e~r~~l 107 (111)
T 2l3l_A 97 QAALAERRRGL 107 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998887665
No 26
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=53.69 E-value=27 Score=22.27 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 026817 189 LDTLKNMAHDMNEEIDRQVPMMDEIDEKVILY 220 (232)
Q Consensus 189 v~~Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~ 220 (232)
+..-.++|..+-.+|..|.+=|+..+..+|..
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i 40 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQI 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHH
Confidence 34445666666677777777766666666654
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.84 E-value=1.1e+02 Score=28.68 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhcC
Q 026817 5 DLITRVDAICKKYDKY 20 (232)
Q Consensus 5 ~~~~~~~~~~~k~~~~ 20 (232)
||..|++-|=.+|+.|
T Consensus 61 DltkrINELKnqLEdl 76 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6777888888888877
No 28
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=35.67 E-value=60 Score=29.64 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=43.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HH------HHhhhHHHHhhhhhhhccccch
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEE----ID------RQVPMMDEIDEKVILYSFVGIS 226 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~E----L~------~Q~~mLDdLd~~mD~~~~~~~~ 226 (232)
.-+++-.|-.|+.++..|+|+|+++....+- -+ +=..|+++|..-...|+|-|..
T Consensus 31 iS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian~T~fNG~~ 95 (425)
T 3v47_C 31 ISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVK 95 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcCCEE
Confidence 4678889999999999999999999876652 11 2246888888888889888864
No 29
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=30.63 E-value=1.2e+02 Score=20.31 Aligned_cols=43 Identities=7% Similarity=0.154 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHhhhhhhh
Q 026817 178 QDQGLDVIGEGLDTLKN---MAHDMNEEIDRQVPMMDEIDEKVILY 220 (232)
Q Consensus 178 QD~~LD~Is~~v~~Lk~---~a~~Ig~EL~~Q~~mLDdLd~~mD~~ 220 (232)
+++.|+.-...+.-..+ .|..=-.+|..|++-|+..+..+|..
T Consensus 7 ~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i 52 (70)
T 3b5n_C 7 KQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLM 52 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444333322 34444445666666666666666543
No 30
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=30.60 E-value=3.1e+02 Score=24.88 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 026817 177 KQDQGLDVIGEGLDTLKNMAHDM 199 (232)
Q Consensus 177 eQD~~LD~Is~~v~~Lk~~a~~I 199 (232)
..-+.|.....+|..|...|..|
T Consensus 246 ~le~~l~~~~~~I~~L~~qA~~l 268 (450)
T 3r6n_A 246 KEREKILEYKRQVQNLVNKSKKI 268 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999998875
No 31
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=29.15 E-value=2e+02 Score=22.45 Aligned_cols=20 Identities=40% Similarity=0.239 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026817 71 AEIRRTKARLLEEVAKLQRL 90 (232)
Q Consensus 71 aeir~~l~~L~~~L~dL~~~ 90 (232)
.+|+..+..|......|...
T Consensus 77 ~~i~~~~~~l~~~W~~L~~~ 96 (218)
T 3edu_A 77 ATIAEWKDGLNEMWADLLEL 96 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36777788888877777665
No 32
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.84 E-value=1.7e+02 Score=20.88 Aligned_cols=83 Identities=7% Similarity=0.186 Sum_probs=43.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 026817 35 AFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALK 114 (232)
Q Consensus 35 PF~~~~~~v~~ei~~~l~~a~~~~~~~~~~~~~~~~aeir~~l~~L~~~L~dL~~~~~~~~~~lt~~El~rRr~~V~~l~ 114 (232)
-|.+.|..+.++|...+..+..+..+. -...+. ++...|....+-|..++-. ...+++..-..=..-|...+
T Consensus 9 ~YE~df~~l~~~i~~kl~~i~~~~gee---rk~~i~-~ie~~l~EA~ell~qMelE----~r~~p~~~R~~~~~klr~Yk 80 (102)
T 1vcs_A 9 GYEQDFAVLTAEITSKIARVPRLPPDE---KKQMVA-NVEKQLEEARELLEQMDLE----VREIPPQSRGMYSNRMRSYK 80 (102)
T ss_dssp CSHHHHHHHHHHHHHHHHHGGGSCTTT---HHHHHH-HHHHHHHHHHHHHHHHHHH----HTTSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcHH---HHHHHH-HHHHHHHHHHHHHHHHHHH----HHhCCHHhHHHHHHHHHHHH
Confidence 455666777788877776543322111 011222 5555566666666665432 22345444334445566666
Q ss_pred HHHHchhhhhh
Q 026817 115 DRIEGIPDGST 125 (232)
Q Consensus 115 ~~i~~l~~~~~ 125 (232)
.++..++..+.
T Consensus 81 ~dL~~lk~elk 91 (102)
T 1vcs_A 81 QEMGKLETDFK 91 (102)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHH
Confidence 67766666654
No 33
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.69 E-value=90 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhhh
Q 026817 102 ELEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 102 El~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
-+.+|+.-|..++.++.+++..+..
T Consensus 46 ~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 46 TLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999988753
No 34
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=25.30 E-value=57 Score=21.22 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHhhhhh
Q 026817 198 DMNEEIDRQVPMMDEIDEKVI 218 (232)
Q Consensus 198 ~Ig~EL~~Q~~mLDdLd~~mD 218 (232)
.|..||..|.-+|+.|-..|.
T Consensus 7 ~I~~El~kQe~lL~~LH~e~~ 27 (56)
T 2kwh_A 7 GIKEEIRRQEFLLNSLHRDLQ 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999998888775
No 35
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.90 E-value=98 Score=22.94 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhhh
Q 026817 102 ELEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 102 El~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
-+.+|+..|..++.++.+++..+..
T Consensus 63 tl~~R~~~Vs~lq~KiaeLKrqLAd 87 (113)
T 4fi5_A 63 TLTDREGVAVSIQAKIDELKRQLAD 87 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 36
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=24.82 E-value=2e+02 Score=20.71 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHchhhhhhhcccccCCCCCCCCCCCCccCCCCCCCCCcchhhhchhhhHHHHHHHHHHHhh
Q 026817 99 SKEELEARSDLVAALKDRIEGIPDGSTAAAKQTGGGTTSASYTGIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQ 178 (232)
Q Consensus 99 t~~El~rRr~~V~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~q~Qq~~m~eQ 178 (232)
.-.|++.|.+-+.++...+.+|...|.. -..+..+|
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~d--------------------------------------------la~lV~eQ 47 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMD--------------------------------------------MAMLVESQ 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HHHHHHHh
Confidence 3456777777777777777766655431 13467788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 026817 179 DQGLDVIGEGLDTLKNMAHDMNEEI 203 (232)
Q Consensus 179 D~~LD~Is~~v~~Lk~~a~~Ig~EL 203 (232)
.+.+|.|...|..-..--..=..||
T Consensus 48 ge~Id~Ie~nv~~a~~~v~~g~~eL 72 (109)
T 3hd7_B 48 GEMIDRIEYNVEHAVDYVERAVSDT 72 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888876555444444444
No 37
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=23.15 E-value=85 Score=28.09 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=42.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----H------HHhhhHHHHhhhhhhhccccch
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEI----D------RQVPMMDEIDEKVILYSFVGIS 226 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig~EL----~------~Q~~mLDdLd~~mD~~~~~~~~ 226 (232)
.-+++-.|-.|+.++..|+|+|+++....+-- + +=..|+++|..-...|.|-|..
T Consensus 19 ~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~t~fnG~~ 83 (398)
T 1io1_A 19 ISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK 83 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhceeCCeE
Confidence 46788999999999999999999998765311 1 2236888888888888888764
No 38
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=23.12 E-value=39 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=11.3
Q ss_pred HHHHHHHhhhhcCC
Q 026817 8 TRVDAICKKYDKYD 21 (232)
Q Consensus 8 ~~~~~~~~k~~~~~ 21 (232)
.+-..||.||++++
T Consensus 36 ~~w~~Ii~KY~~~e 49 (63)
T 2yfv_C 36 RVWSQIIQKYESID 49 (63)
T ss_dssp HHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHhccc
Confidence 45689999999963
No 39
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.09 E-value=2.1e+02 Score=22.15 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHchhhhhh
Q 026817 103 LEARSDLVAALKDRIEGIPDGST 125 (232)
Q Consensus 103 l~rRr~~V~~l~~~i~~l~~~~~ 125 (232)
...|+..+..|..++..+-..|.
T Consensus 79 ~r~~k~~~~~L~~~f~~~~~~fq 101 (196)
T 1fio_A 79 DTNKQAQAENSRQRFLKLIQDYR 101 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899888888776665
No 40
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=22.03 E-value=78 Score=22.85 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhhccccchhhccC
Q 026817 192 LKNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVG 231 (232)
Q Consensus 192 Lk~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~~~~~~~~~ 231 (232)
.+.+|..|-.|+| ..|-+.-+||||
T Consensus 48 ekdiA~~IK~~fD---------------kkyG~~WHcIVG 72 (102)
T 1yo3_A 48 EKDIAAHIKKEFD---------------RKYDPTWHCVVG 72 (102)
T ss_dssp HHHHHHHHHHHHH---------------HHHCSCEEEEES
T ss_pred HHHHHHHHHHHHh---------------hhcCCCCEEEEc
Confidence 4788888888887 346788999998
No 41
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=21.84 E-value=2.1e+02 Score=23.15 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=39.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHhhhHHHHhhhhhhhccccc
Q 026817 172 EMRRMKQDQGLDVIGEGLDTLKNMAHDM-------------NEEIDRQVPMMDEIDEKVILYSFVGI 225 (232)
Q Consensus 172 q~~m~eQD~~LD~Is~~v~~Lk~~a~~I-------------g~EL~~Q~~mLDdLd~~mD~~~~~~~ 225 (232)
..+++-.|-.|+.++..+.++|+++... ..|+. .|+++|..-+..++|-|.
T Consensus 32 ~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~---~l~~~i~~~an~~~~nG~ 95 (248)
T 2d4x_A 32 TQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQ---GIRDQLMNLANSTDGNGR 95 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHH---HHHHHHHHHHTCBCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHHHHHHHHHccCCCCCc
Confidence 3678889999999999999999998764 33443 577777777777766664
No 42
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.76 E-value=1.3e+02 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhhh
Q 026817 102 ELEARSDLVAALKDRIEGIPDGSTA 126 (232)
Q Consensus 102 El~rRr~~V~~l~~~i~~l~~~~~~ 126 (232)
-+.+|+..|..++.++.+|+..+..
T Consensus 46 ~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 46 TLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999988754
No 43
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=21.62 E-value=1.8e+02 Score=25.42 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=40.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHhhhhhhhccccc
Q 026817 173 MRRMKQDQGLDVIGEGLDTLKNMAHDMN-------------EEIDRQVPMMDEIDEKVILYSFVGI 225 (232)
Q Consensus 173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig-------------~EL~~Q~~mLDdLd~~mD~~~~~~~ 225 (232)
.+++-.|..|+.++..|.|+|+++.... .|+ ..|+++|..-+..|+|-|.
T Consensus 53 S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei---~qL~~eI~~iANsT~fNG~ 115 (326)
T 3k8w_A 53 SLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEV---TQLQSEIQRVAEQTSFNGQ 115 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH---HHHHHHHHHHHHHCEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHHHHHHHHHHhhCCcCCe
Confidence 5788899999999999999999997654 333 3588888888888888875
No 44
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=21.01 E-value=1.8e+02 Score=26.68 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=41.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHhhhhhhhccccch
Q 026817 173 MRRMKQDQGLDVIGEGLDTLKNMAHDMN-------------EEIDRQVPMMDEIDEKVILYSFVGIS 226 (232)
Q Consensus 173 ~~m~eQD~~LD~Is~~v~~Lk~~a~~Ig-------------~EL~~Q~~mLDdLd~~mD~~~~~~~~ 226 (232)
-+++-.|..|+.++..+.|+|+++..-. .|+ ..|+++|..-...|+|-|..
T Consensus 72 s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei---~~l~~ei~~ian~t~fnG~~ 135 (494)
T 1ucu_A 72 SIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEI---TQRLNEIDRVSGQTQFNGVK 135 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHH---HHHHHHHHHHHHHCCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHHHHHHHHHHhhCccCCee
Confidence 6788899999999999999999998754 333 36888888888888888753
No 45
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=20.72 E-value=1.1e+02 Score=21.35 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhhccccchhhccC
Q 026817 193 KNMAHDMNEEIDRQVPMMDEIDEKVILYSFVGISQCVVG 231 (232)
Q Consensus 193 k~~a~~Ig~EL~~Q~~mLDdLd~~mD~~~~~~~~~~~~~ 231 (232)
+++|..|-.|+|. .|-+.-+||||
T Consensus 36 k~iA~~IK~~fD~---------------kyg~~WhciVG 59 (89)
T 3rjs_A 36 KDIAAFIKKEFDR---------------KHNPTWHCVVG 59 (89)
T ss_dssp HHHHHHHHHHHHH---------------HHCSCCEEEEE
T ss_pred HHHHHHHHHHHhc---------------ccCCCCEEEEe
Confidence 7788888888874 36788899998
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.47 E-value=55 Score=19.13 Aligned_cols=12 Identities=17% Similarity=0.673 Sum_probs=8.5
Q ss_pred HHHHHHhhhHHH
Q 026817 201 EEIDRQVPMMDE 212 (232)
Q Consensus 201 ~EL~~Q~~mLDd 212 (232)
+||..||.+|+.
T Consensus 17 ddlkrQN~~Le~ 28 (34)
T 1a93_B 17 DDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457788887764
No 47
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.29 E-value=1.9e+02 Score=20.34 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=14.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026817 33 DDAFARLYGVVQADLDAALQKSEAAATEKN 62 (232)
Q Consensus 33 ~DPF~~~~~~v~~ei~~~l~~a~~~~~~~~ 62 (232)
.|+| --.+.+|+.++..++.....+|
T Consensus 33 s~~y----l~~k~eLq~Li~~LDev~~~~N 58 (89)
T 2d9d_A 33 SELY----LSSKTELQGLIGQLDEVSLEKN 58 (89)
T ss_dssp TTHH----HHHHHHHHHHHHHHGGGCSCSS
T ss_pred hHHH----hhhHHHHHHHHHHHhhcccCCC
Confidence 4666 3456666666655555444333
Done!