BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026818
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
Length = 215
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 14/209 (6%)
Query: 20 QKTTSSSSSSLLADWNSYAATRDADDGSGLAFGFDIESA-------VRSANDTVSGTFNV 72
++ S +SL N + TR + GF+ ESA S N +
Sbjct: 3 EEPPSDQVNSLRDSLNRWNQTRQQNSQ-----GFN-ESAKTLFSSWADSLNTRAQDIYQT 56
Query: 73 VSKGVRDLPGNLQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALC 132
+ +DL + + + + + ++ F FL G F T PV+ P+KF L
Sbjct: 57 LPVSRQDLVQDQEPSWFQLSRTERMVLFVCFLL-GATACFTLCTFLFPVLAAKPRKFGLL 115
Query: 133 FTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLF 192
+T+G + +F L GP L H++++ERLPF++ F + TIY + + +L++
Sbjct: 116 WTMGSLLFVLAFGVLMGPLAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITC 175
Query: 193 SVIQVLALAYYAISYFPGGSAGMKFLSSA 221
++++++A+ YYAISYFP G+ G++ LSSA
Sbjct: 176 ALLELVAVIYYAISYFPFGATGLRMLSSA 204
>sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sft2 PE=3 SV=1
Length = 201
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 8/146 (5%)
Query: 74 SKGVRDLPGN-------LQSATSTVPSGKALMYFGLFLASGVFFIFIAFTMFLPVMVLMP 126
S ++P N QS+ ++ + M FG+ L + IA MF PV+VL P
Sbjct: 38 SNDYTEIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAIACFMF-PVLVLKP 96
Query: 127 QKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSY 186
+KF L +T+G + F ++G +++ ERLP TL + ++ TI ++ + S
Sbjct: 97 RKFVLLWTMGSLLAVLGFAIVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKST 156
Query: 187 ILSVLFSVIQVLALAYYAISYFPGGS 212
ILS++F V+ +L+ Y I++FP G+
Sbjct: 157 ILSIVFGVLHILSFVAYLIAFFPFGT 182
>sp|Q9CSV6|SFT2C_MOUSE Vesicle transport protein SFT2C OS=Mus musculus GN=Sft2d3 PE=2 SV=2
Length = 209
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 117 MFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPF--TLGFIGSMA 174
++ PV++L +KFAL +++G S LRG + E P TLG+ ++
Sbjct: 90 LYAPVLLLRARKFALLWSLGSVLAWASAALLRG-GPACGRLLRGEETPSRSTLGYAAALG 148
Query: 175 GTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGG 211
T+Y ++VL S +L+ L + QV AL Y I P G
Sbjct: 149 ATLYAALVLRSTVLTALGACAQVAALLYALIGLLPWG 185
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
Length = 160
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 121 VMVLMPQK----FALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGT 176
V++ +P+K FA+ +T G IGS L GP QL M RL T+ + A T
Sbjct: 53 VLLWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALT 112
Query: 177 IYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMK 216
+ + H+ L+++F ++Q LAL +Y++S+ P +K
Sbjct: 113 LCSAFWWHNKGLALIFCILQSLALTWYSLSFIPFARDAVK 152
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1
Length = 159
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 97 LMYFGLFLASGVFF-IFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLA 155
L +F + GVFF I ++LP + + FA+ +T+G + S L GP QL
Sbjct: 34 LKWFAICFVCGVFFSILGTGLLWLPGGI---KLFAVFYTLGNLAALASTCFLMGPVKQLK 90
Query: 156 HMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFP-GGSAG 214
M RL T+ + T+ ++ H L+VLF ++Q L++ +Y++SY P A
Sbjct: 91 KMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLSYIPYARDAV 150
Query: 215 MKFLSSALT 223
+K SS L+
Sbjct: 151 IKCCSSLLS 159
>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1
Length = 159
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 121 VMVLMPQK----FALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGT 176
+++ +P+K FA+ +T+G IGS L GP QL M RL T+ + A T
Sbjct: 53 LLLWVPRKGLGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALT 112
Query: 177 IYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMK 216
+ S L + L+++F ++Q LAL +Y++SY P +K
Sbjct: 113 L-CSAFLWNKGLALIFCILQSLALTWYSLSYIPYARDAVK 151
>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2 SV=1
Length = 159
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 89 STVPSGKALMYFGLFLASGVFFIFIAF-TMFLPVMVLMPQKFALCFTVGCGFIIGSFFAL 147
S++ L +F + +G+FF F+ ++LP + + FA+ +T+G + S L
Sbjct: 26 SSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGM---KLFAVFYTLGNLAALASTCFL 82
Query: 148 RGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISY 207
GP QL M RL T+ + + T+ ++ L++LF ++Q L++ +Y++SY
Sbjct: 83 MGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSY 142
Query: 208 FP-GGSAGMKFLSSAL 222
P A +K SS L
Sbjct: 143 IPYARDAVLKCCSSLL 158
>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2
SV=1
Length = 159
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 97 LMYFGLFLASGVFF-IFIAFTMFLPVMVLMPQKFALCFTVGCGFIIGSFFALRGPKNQLA 155
L +F + +G+FF I ++LP V + FA+ +T+G + S L GP QL
Sbjct: 34 LKWFVICFVAGIFFSILGTGLLWLPNGV---KLFAVFYTLGNLAALASTCFLMGPVKQLK 90
Query: 156 HMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFP-GGSAG 214
M RL T+ + + T+ ++ L++LF ++Q L++ +Y++SY P A
Sbjct: 91 KMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAV 150
Query: 215 MKFLSSALT 223
+K SS L+
Sbjct: 151 LKCCSSILS 159
>sp|Q4FZV2|SFT2B_RAT Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2
SV=1
Length = 157
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 129 FALCFTVGCGFIIGSFFALRGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYIL 188
FA+ +T+G IGS L GP QL M RL T+ + S L + L
Sbjct: 63 FAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIATIL-VLLFFVLTLCSAFLWNKGL 121
Query: 189 SVLFSVIQVLALAYYAISYFPGGSAGMK 216
+++F ++Q LAL +Y++SY P +K
Sbjct: 122 ALIFCILQSLALTWYSLSYIPYARDAVK 149
>sp|Q21WG7|GLGB_RHOFD 1,4-alpha-glucan branching enzyme GlgB OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=glgB PE=3 SV=1
Length = 625
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 11 QSSGTEDQLQKTTSSSSSSLLADWNSYAATRD----ADDGSGLAFGFDIESAVR 60
QS+G + ++ S S++ DWN ++ D DDGSG+ GF +E+AVR
Sbjct: 27 QSNGGANFAVWAPNAESVSVVGDWNYWSGNVDRLDLRDDGSGIWQGF-VENAVR 79
>sp|Q697L1|TRPV1_CANFA Transient receptor potential cation channel subfamily V member 1
OS=Canis familiaris GN=TRPV1 PE=2 SV=1
Length = 840
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 95 KALMYFGLFLASGVFFIFIAFTMFLPVMVLMPQKFALCFTVGCGFII---------GSFF 145
K + YF F+ IF + PV L P K L TVG F + G +F
Sbjct: 432 KRIFYFNFFIYCLYMIIFTTAAYYRPVDGLPPYK--LKHTVGDYFRVTGEILSVLGGVYF 489
Query: 146 ALRGPKNQLAHMSSKERL-----PFTLGFIGS--MAGTIYVSMVLH-SYILSVLFSVIQV 197
RG + L S + L L F+ S M GT+ + H Y+ S++FS
Sbjct: 490 FFRGIQYFLQRRPSLKTLFVDSYSEMLFFVQSLFMLGTVVLYFCHHKEYVASMVFS---- 545
Query: 198 LALAYYAISYFPGGSAGMKFLSSALTSSVMR 228
LA+ + + Y+ G M + + ++R
Sbjct: 546 LAMGWTNMLYYTRGFQQMGIYAVMIEKMILR 576
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,371,555
Number of Sequences: 539616
Number of extensions: 2743076
Number of successful extensions: 10909
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 10853
Number of HSP's gapped (non-prelim): 63
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)