Query 026818
Match_columns 232
No_of_seqs 150 out of 378
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 7.7 9.4E+02 0.032 20.4 6.8 13 128-140 407-419 (491)
2 4f4s_A ATP synthase subunit 9, 5.2 7.5E+02 0.026 17.8 3.9 23 94-116 49-71 (76)
3 2k19_A Putative piscicolin 126 5.0 1.5E+02 0.0051 22.7 -0.0 13 6-18 4-16 (98)
4 3bo0_B Preprotein translocase 4.8 7.6E+02 0.026 16.3 3.6 18 145-162 8-25 (65)
5 1rij_A E6APN1 peptide; Trp-CAG 4.4 1.1E+02 0.0038 17.8 -0.8 15 2-16 3-18 (26)
6 2kyh_A KVAP, voltage-gated pot 4.3 9.8E+02 0.034 18.4 4.5 7 153-159 13-19 (147)
7 2zy9_A Mg2+ transporter MGTE; 4.1 1.9E+03 0.065 19.7 9.1 48 135-182 350-404 (473)
8 2zrr_A Mundticin KS immunity p 4.0 1.9E+02 0.0065 22.8 -0.0 14 6-19 24-37 (118)
9 3ua0_A Fibroin heavy chain; th 3.9 2E+02 0.0069 23.0 0.0 16 186-201 12-27 (134)
10 3zwl_E Eukaryotic translation 3.8 2.9E+02 0.0099 18.5 0.7 15 27-41 17-31 (50)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=7.74 E-value=9.4e+02 Score=20.35 Aligned_cols=13 Identities=8% Similarity=-0.085 Sum_probs=6.6
Q ss_pred hHHHHHhhhHHHH
Q 026818 128 KFALCFTVGCGFI 140 (232)
Q Consensus 128 KFAllfTlGsil~ 140 (232)
-.++..+.+.+..
T Consensus 407 ~~g~~~~~~~~~~ 419 (491)
T 4gc0_A 407 ALAIAVAAQWLAN 419 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555543
No 2
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=5.22 E-value=7.5e+02 Score=17.77 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026818 94 GKALMYFGLFLASGVFFIFIAFT 116 (232)
Q Consensus 94 ~qRl~gF~~c~~~g~~f~~ls~~ 116 (232)
+.-++||.+.=+.|+++.++++.
T Consensus 49 ~~~ilG~Al~Ea~glf~LvvA~l 71 (76)
T 4f4s_A 49 PMAILGFALSEATGLFCLMVSFL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999974
No 3
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=5.04 E-value=1.5e+02 Score=22.65 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=9.1
Q ss_pred hhhccCCCCCchh
Q 026818 6 QGWFSQSSGTEDQ 18 (232)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (232)
-+||+||.+-.++
T Consensus 4 lKWfsGG~ER~~~ 16 (98)
T 2k19_A 4 LKWFSGGKERSNQ 16 (98)
T ss_dssp CCCCSCCSCHHHH
T ss_pred ceeccCCHHHHHH
Confidence 4899999665443
No 4
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=4.79 E-value=7.6e+02 Score=16.26 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=15.5
Q ss_pred hhhhcHHHHHHhhcCCCc
Q 026818 145 FALRGPKNQLAHMSSKER 162 (232)
Q Consensus 145 ~FL~GP~~qlk~M~s~~R 162 (232)
-|+++..+.+|+..-|.|
T Consensus 8 ~f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 8 AFAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHhheeccCC
Confidence 578888899999998888
No 5
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=4.45 E-value=1.1e+02 Score=17.80 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=9.4
Q ss_pred hhhhhhhcc-CCCCCc
Q 026818 2 QKMAQGWFS-QSSGTE 16 (232)
Q Consensus 2 ~~~~~~~~~-~~~~~~ 16 (232)
|+.+-.|+. |++++.
T Consensus 3 qellgqwlkdggpssg 18 (26)
T 1rij_A 3 QELLGQWLKDGGPSSG 18 (26)
T ss_dssp HHHHHHHHHTTGGGSS
T ss_pred HHHHHHHHHcCCCCCC
Confidence 667778985 554433
No 6
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=4.35 E-value=9.8e+02 Score=18.38 Aligned_cols=7 Identities=0% Similarity=0.231 Sum_probs=2.6
Q ss_pred HHHhhcC
Q 026818 153 QLAHMSS 159 (232)
Q Consensus 153 qlk~M~s 159 (232)
.++++.+
T Consensus 13 ~~~~~~e 19 (147)
T 2kyh_A 13 NIGDVME 19 (147)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 3333333
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=4.14 E-value=1.9e+03 Score=19.71 Aligned_cols=48 Identities=13% Similarity=-0.069 Sum_probs=22.6
Q ss_pred hhHHHHHhHhhhhhc-------HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH
Q 026818 135 VGCGFIIGSFFALRG-------PKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMV 182 (232)
Q Consensus 135 lGsil~l~S~~FL~G-------P~~qlk~M~s~~Rl~~Ti~Yi~Slv~TLy~al~ 182 (232)
-||+-...++...+| +++..|.++.+-+.-.....+.+++..+...++
T Consensus 350 gGn~Gtq~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~ 404 (473)
T 2zy9_A 350 GGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWD 404 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666 333333333333333333444444444444343
No 8
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=4.05 E-value=1.9e+02 Score=22.77 Aligned_cols=14 Identities=21% Similarity=0.518 Sum_probs=4.3
Q ss_pred hhhccCCCCCchhh
Q 026818 6 QGWFSQSSGTEDQL 19 (232)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (232)
-+||+||.+-.+++
T Consensus 24 LKWFsGGkER~~~A 37 (118)
T 2zrr_A 24 LKWFSGGDDRRKKA 37 (118)
T ss_dssp ------CCCHHHHH
T ss_pred ceeccCCHHHHHHH
Confidence 48999996654433
No 9
>3ua0_A Fibroin heavy chain; the double-layered-sheets, fibroin folding initiation, prote; 3.00A {Bombyx mori}
Probab=3.92 E-value=2e+02 Score=23.00 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 026818 186 YILSVLFSVIQVLALA 201 (232)
Q Consensus 186 ~iLtll~~iiQ~~All 201 (232)
.-++||||.+|+++.-
T Consensus 12 ~~~VILCCALQYvaa~ 27 (134)
T 3ua0_A 12 KTFVILCCALQYVAYT 27 (134)
T ss_dssp ----------------
T ss_pred hhhhhhhHHHHHHHhc
Confidence 3478999999999864
No 10
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=3.85 E-value=2.9e+02 Score=18.45 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.4
Q ss_pred cchhhhhhHhhhccc
Q 026818 27 SSSLLADWNSYAATR 41 (232)
Q Consensus 27 ~~~~l~~w~~~~~~~ 41 (232)
-+-+|.+|++|....
T Consensus 17 RRrlLeEW~awRa~~ 31 (50)
T 3zwl_E 17 QRELLKQWTEYREKI 31 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 477999999998853
Done!