Query 026818
Match_columns 232
No_of_seqs 150 out of 378
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 22:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026818.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026818hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekc_ f.21.2.2 (C:) Succinat 9.1 2.9E+02 0.021 19.0 9.5 19 92-110 27-45 (129)
2 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.8 4E+02 0.029 16.5 5.1 20 191-210 23-47 (53)
3 d1y0pa3 d.168.1.1 (A:362-504) 4.2 1.5E+02 0.011 20.8 1.3 18 31-48 104-121 (143)
4 d1q90a3 f.23.23.1 (A:248-292) 3.7 3.4E+02 0.025 16.3 2.6 21 159-179 1-21 (45)
5 d1vf5c3 f.23.23.1 (C:250-286) 3.2 3.9E+02 0.029 15.4 2.4 20 159-178 2-21 (37)
6 d1v54j_ f.23.4.1 (J:) Mitochon 2.9 4.7E+02 0.034 16.4 2.8 20 162-181 29-48 (58)
7 d1d4ca3 d.168.1.1 (A:360-505) 2.5 2.8E+02 0.02 19.2 1.4 17 31-47 105-121 (146)
8 d2bopa_ d.58.8.1 (A:) Papillom 2.5 1E+02 0.0075 21.0 -1.1 13 144-156 3-15 (85)
9 d1ppjc2 f.21.1.2 (C:15-260) Mi 2.5 1E+03 0.076 17.9 5.3 35 186-220 20-54 (246)
10 d2dk8a1 a.4.5.85 (A:8-75) DNA- 2.5 2.7E+02 0.02 18.1 1.2 30 74-105 20-49 (68)
No 1
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=9.07 E-value=2.9e+02 Score=19.00 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 026818 92 PSGKALMYFGLFLASGVFF 110 (232)
Q Consensus 92 s~~qRl~gF~~c~~~g~~f 110 (232)
|=..|+.|.++.+++.++.
T Consensus 27 SI~HRisGv~l~~~~~~~~ 45 (129)
T d1nekc_ 27 SILHRVSGVITFVAVGILL 45 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578999987766555443
No 2
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.80 E-value=4e+02 Score=16.50 Aligned_cols=20 Identities=15% Similarity=0.482 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHH-----HHhcCCC
Q 026818 191 LFSVIQVLALAYY-----AISYFPG 210 (232)
Q Consensus 191 l~~iiQ~~AllwY-----~lSYiP~ 210 (232)
.+..+--++++|| ++.|+|+
T Consensus 23 ~~G~a~gl~lvy~TDWklil~yvPy 47 (53)
T d2fyuk1 23 LWGAVGAVGLVWATDWRLILDWVPY 47 (53)
T ss_dssp HHHHHHHHHHHHHHTCHHHHTSSSS
T ss_pred hhhhhhheeeeeeehHHHHHhhhhh
Confidence 3445556778888 5888887
No 3
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=4.15 E-value=1.5e+02 Score=20.84 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.4
Q ss_pred hhhhHhhhccccccCCCC
Q 026818 31 LADWNSYAATRDADDGSG 48 (232)
Q Consensus 31 l~~w~~~~~~~~~~~~~~ 48 (232)
+++||+|+..+.+|+.+|
T Consensus 104 v~~yN~~~~~G~D~~fgr 121 (143)
T d1y0pa3 104 VARYNSLVSSGKDTDFER 121 (143)
T ss_dssp HHHHHHHHHHTCCTTTCC
T ss_pred HHHHHHHHhcCCCCCCCC
Confidence 789999999987766543
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.67 E-value=3.4e+02 Score=16.30 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=13.9
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 026818 159 SKERLPFTLGFIGSMAGTIYV 179 (232)
Q Consensus 159 s~~Rl~~Ti~Yi~Slv~TLy~ 179 (232)
+|.|+..-++|+.+++++=+.
T Consensus 1 nP~Rv~gll~F~~~v~laQi~ 21 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVL 21 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777766544
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.18 E-value=3.9e+02 Score=15.41 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=13.0
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 026818 159 SKERLPFTLGFIGSMAGTIY 178 (232)
Q Consensus 159 s~~Rl~~Ti~Yi~Slv~TLy 178 (232)
+|.|+..-++|+.++.++=+
T Consensus 2 ~p~Rv~gl~~F~~~v~laQi 21 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVMLAQL 21 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666543
No 6
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.92 E-value=4.7e+02 Score=16.36 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 026818 162 RLPFTLGFIGSMAGTIYVSM 181 (232)
Q Consensus 162 Rl~~Ti~Yi~Slv~TLy~al 181 (232)
++.+-+....+++.|.|+..
T Consensus 29 ~~LYr~Tm~L~~~G~~~s~~ 48 (58)
T d1v54j_ 29 NILYRVTMTLCLGGTLYSLY 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555443
No 7
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}
Probab=2.54 E-value=2.8e+02 Score=19.21 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=13.7
Q ss_pred hhhhHhhhccccccCCC
Q 026818 31 LADWNSYAATRDADDGS 47 (232)
Q Consensus 31 l~~w~~~~~~~~~~~~~ 47 (232)
+.+||+++..+..++.+
T Consensus 105 v~~yN~~~~~G~D~~fg 121 (146)
T d1d4ca3 105 VTAYNGFVKSGKDAQFE 121 (146)
T ss_dssp HHHHHHHHHHTCCSSSC
T ss_pred HHHHHHHHhcCCCCCcC
Confidence 68999999998776654
No 8
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine papillomavirus type 1 [TaxId: 10559]}
Probab=2.52 E-value=1e+02 Score=21.00 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.4
Q ss_pred hhhhhcHHHHHHh
Q 026818 144 FFALRGPKNQLAH 156 (232)
Q Consensus 144 ~~FL~GP~~qlk~ 156 (232)
+..|+||.+|+|.
T Consensus 3 ~illkG~~N~LKC 15 (85)
T d2bopa_ 3 FALISGTANQVKC 15 (85)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEcCCCcccC
Confidence 4568899999985
No 9
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.51 E-value=1e+03 Score=17.94 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 026818 186 YILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSS 220 (232)
Q Consensus 186 ~iLtll~~iiQ~~AllwY~lSYiP~G~~~lk~~~s 220 (232)
-.+..++.++|+++=+.-+.-|.|-..++-..+..
T Consensus 20 G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~ 54 (246)
T d1ppjc2 20 GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTH 54 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34677788999999999999999987766655443
No 10
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.46 E-value=2.7e+02 Score=18.11 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=20.6
Q ss_pred ccccccCCccccccCCCCChHHHHHHHHHHHH
Q 026818 74 SKGVRDLPGNLQSATSTVPSGKALMYFGLFLA 105 (232)
Q Consensus 74 ~~g~~~~~~~~qs~~~~Ls~~qRl~gF~~c~~ 105 (232)
-+|+.+ ...|.++++++..||....=-++.
T Consensus 20 P~GitD--~dl~~a~p~v~~~qRv~aiN~LLs 49 (68)
T d2dk8a1 20 PHGITD--QVIQNEMPHIEAQQRAVAINRLLS 49 (68)
T ss_dssp SSCEEH--HHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHCcCCCHHHHHHHHHHHHH
Confidence 356644 356788999999999876544433
Done!