Query 026819
Match_columns 232
No_of_seqs 145 out of 189
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 22:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_L ABC10-alpha, DNA-direct 89.5 0.14 4.9E-06 36.5 1.7 27 1-34 27-53 (70)
2 3h0g_L DNA-directed RNA polyme 85.8 0.39 1.3E-05 33.7 2.1 27 1-34 20-46 (63)
3 2kae_A GATA-type transcription 75.1 0.79 2.7E-05 32.8 0.7 33 2-38 8-42 (71)
4 3k7a_M Transcription initiatio 75.0 1.3 4.6E-05 39.7 2.3 33 2-37 21-53 (345)
5 4bbr_M Transcription initiatio 75.0 1.2 4E-05 40.3 1.9 38 2-42 21-59 (345)
6 2e2z_A TIM15; protein import, 74.9 1 3.5E-05 34.3 1.3 32 2-34 13-46 (100)
7 2fiy_A Protein FDHE homolog; F 72.9 2 6.8E-05 38.6 2.9 63 3-66 223-302 (309)
8 3k1f_M Transcription initiatio 69.5 2.4 8.2E-05 35.6 2.4 38 3-43 22-60 (197)
9 1d4u_A Nucleotide excision rep 67.7 1.8 6.3E-05 33.4 1.3 31 2-35 5-35 (111)
10 4ayb_P DNA-directed RNA polyme 67.5 2.4 8.3E-05 28.1 1.6 28 2-33 3-30 (48)
11 1gnf_A Transcription factor GA 66.0 2 6.9E-05 28.1 1.0 31 1-34 3-33 (46)
12 3j21_g 50S ribosomal protein L 64.1 1.6 5.5E-05 29.2 0.3 24 2-35 14-37 (51)
13 1dl6_A Transcription factor II 61.3 5.4 0.00018 26.9 2.5 30 3-37 12-41 (58)
14 2jrp_A Putative cytoplasmic pr 61.1 4.9 0.00017 29.4 2.4 38 1-38 1-43 (81)
15 2gmg_A Hypothetical protein PF 57.5 4.2 0.00014 31.1 1.6 26 2-34 67-92 (105)
16 1gh9_A 8.3 kDa protein (gene M 56.8 2.7 9.2E-05 29.9 0.4 25 3-35 5-29 (71)
17 2kdx_A HYPA, hydrogenase/ureas 56.6 2.7 9.2E-05 32.1 0.4 27 2-36 73-100 (119)
18 1k81_A EIF-2-beta, probable tr 54.9 4.6 0.00016 24.8 1.2 29 4-35 2-30 (36)
19 2i5o_A DNA polymerase ETA; zin 50.3 8 0.00027 24.3 1.8 26 26-51 9-36 (39)
20 2apo_B Ribosome biogenesis pro 49.8 7.1 0.00024 26.9 1.6 19 28-46 20-49 (60)
21 1pft_A TFIIB, PFTFIIBN; N-term 49.7 9.3 0.00032 24.5 2.1 31 2-37 5-35 (50)
22 3dfx_A Trans-acting T-cell-spe 47.6 4.4 0.00015 28.2 0.3 30 2-34 7-36 (63)
23 2vut_I AREA, nitrogen regulato 47.2 5 0.00017 25.8 0.4 29 3-34 2-30 (43)
24 4gat_A Nitrogen regulatory pro 47.0 5.2 0.00018 28.0 0.6 30 2-34 9-38 (66)
25 6rxn_A Rubredoxin; electron tr 44.0 12 0.0004 24.3 1.9 37 2-40 4-44 (46)
26 2aus_D NOP10, ribosome biogene 40.9 11 0.00038 25.9 1.5 18 28-45 19-47 (60)
27 2jne_A Hypothetical protein YF 39.0 15 0.00052 27.8 2.1 37 1-37 31-72 (101)
28 2e9h_A EIF-5, eukaryotic trans 38.1 20 0.0007 29.1 2.9 31 4-35 105-135 (157)
29 2cor_A Pinch protein; LIM doma 37.0 14 0.00048 25.5 1.5 43 2-44 15-60 (79)
30 3j20_Y 30S ribosomal protein S 36.6 9.5 0.00033 25.1 0.6 9 4-12 21-29 (50)
31 3a43_A HYPD, hydrogenase nicke 36.3 9.3 0.00032 30.1 0.6 11 3-13 71-81 (139)
32 1j2o_A FLIN2, fusion of rhombo 35.9 30 0.001 25.4 3.4 44 2-45 3-53 (114)
33 1ltl_A DNA replication initiat 35.7 12 0.00042 32.3 1.3 32 2-35 134-165 (279)
34 2l4z_A DNA endonuclease RBBP8, 34.8 29 0.00098 26.3 3.2 43 2-44 61-110 (123)
35 3o9x_A Uncharacterized HTH-typ 33.6 20 0.0007 26.7 2.1 33 3-35 3-45 (133)
36 2x5r_A Hypothetical protein OR 31.4 31 0.0011 26.0 2.7 10 2-11 77-86 (127)
37 2g2k_A EIF-5, eukaryotic trans 31.2 26 0.00089 28.8 2.5 31 4-35 98-128 (170)
38 1s24_A Rubredoxin 2; electron 28.9 19 0.00065 26.5 1.2 16 28-43 70-85 (87)
39 4hc9_A Trans-acting T-cell-spe 28.5 14 0.00049 28.3 0.5 30 2-34 5-34 (115)
40 3u4z_A Telomerase-associated p 27.9 26 0.0009 25.8 1.7 18 18-35 25-43 (109)
41 1vq8_Z 50S ribosomal protein L 27.7 27 0.00093 25.3 1.8 28 2-35 27-54 (83)
42 4ayb_N DNA-directed RNA polyme 27.1 17 0.00057 25.5 0.5 17 28-44 6-23 (66)
43 2kwq_A Protein MCM10 homolog; 26.8 22 0.00076 26.4 1.2 27 3-36 49-75 (92)
44 3irb_A Uncharacterized protein 26.0 20 0.00069 28.2 0.9 30 3-42 48-77 (145)
45 3jyw_9 60S ribosomal protein L 26.0 29 0.00098 24.7 1.6 27 2-35 26-53 (72)
46 1nyp_A Pinch protein; LIM doma 25.3 25 0.00085 23.0 1.1 42 2-44 5-51 (66)
47 2ayj_A 50S ribosomal protein L 25.3 20 0.00068 24.4 0.6 23 2-34 19-41 (56)
48 1twf_J DNA-directed RNA polyme 25.3 15 0.0005 26.1 -0.0 18 3-20 5-22 (70)
49 1ffk_W Ribosomal protein L37AE 24.9 34 0.0012 24.3 1.8 27 2-35 27-54 (73)
50 1ef4_A Subunit N, DNA-directed 24.8 11 0.00036 25.7 -0.8 17 4-20 5-21 (55)
51 3u50_C Telomerase-associated p 24.5 17 0.0006 29.7 0.3 26 3-35 43-68 (172)
52 2v3b_B Rubredoxin 2, rubredoxi 24.2 22 0.00076 23.7 0.7 16 28-43 38-53 (55)
53 2kn9_A Rubredoxin; metalloprot 23.6 25 0.00087 25.5 1.0 16 28-43 62-77 (81)
54 1dx8_A Rubredoxin; electron tr 23.5 37 0.0013 23.8 1.8 15 28-42 42-56 (70)
55 1x64_A Alpha-actinin-2 associa 23.4 36 0.0012 23.7 1.8 42 2-44 25-71 (89)
56 2dj7_A Actin-binding LIM prote 23.0 47 0.0016 22.8 2.3 42 2-44 15-61 (80)
57 1yk4_A Rubredoxin, RD; electro 22.8 33 0.0011 22.6 1.3 15 28-42 37-51 (52)
58 1g47_A Pinch protein; LIM doma 22.5 32 0.0011 23.1 1.2 42 2-44 11-59 (77)
59 4rxn_A Rubredoxin; electron tr 22.1 48 0.0016 22.1 2.1 16 28-43 38-53 (54)
60 1m3v_A FLIN4, fusion of the LI 21.8 49 0.0017 24.6 2.3 43 2-44 5-54 (122)
61 2k4x_A 30S ribosomal protein S 21.6 36 0.0012 22.6 1.3 8 4-11 20-27 (55)
62 1wig_A KIAA1808 protein; LIM d 21.0 35 0.0012 23.0 1.2 43 2-44 5-52 (73)
63 7fd1_A FD1, protein (7-Fe ferr 21.0 36 0.0012 24.3 1.4 35 2-36 5-46 (106)
64 3i9v_9 NADH-quinone oxidoreduc 20.8 38 0.0013 26.3 1.6 16 3-18 51-71 (182)
65 1x3z_A Peptide: N-glycanase; h 20.5 44 0.0015 30.3 2.1 36 2-37 119-166 (335)
66 1ryq_A DNA-directed RNA polyme 20.5 25 0.00086 24.8 0.4 22 2-35 11-32 (69)
67 3ga8_A HTH-type transcriptiona 20.1 50 0.0017 22.9 1.9 33 2-34 2-44 (78)
68 3glr_A NAD-dependent deacetyla 20.1 16 0.00055 32.2 -0.9 31 3-35 140-172 (285)
69 1qyp_A RNA polymerase II; tran 20.0 59 0.002 21.2 2.2 31 4-35 17-52 (57)
No 1
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=89.49 E-value=0.14 Score=36.54 Aligned_cols=27 Identities=19% Similarity=0.785 Sum_probs=20.3
Q ss_pred CCccccccCcccccceeeccCCceEeecCCCccc
Q 026819 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
.+|+|-+||..++.. ..+.+ .|++||.
T Consensus 27 v~Y~C~~CG~~~e~~----~~d~i---rCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS----RTDAV---RCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC----TTSTT---CCSSSCC
T ss_pred EEEECCCCCCcceeC----CCCCc---cCCCCCc
Confidence 368999999997654 33333 7999997
No 2
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=85.77 E-value=0.39 Score=33.69 Aligned_cols=27 Identities=30% Similarity=0.806 Sum_probs=19.3
Q ss_pred CCccccccCcccccceeeccCCceEeecCCCccc
Q 026819 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
+.|+|-+||+.++-= .. .--+|++||.
T Consensus 20 v~Y~C~~Cg~~~~l~----~~---~~iRC~~CG~ 46 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ----AK---EVIRCRECGH 46 (63)
T ss_dssp CCCBCSSSCCBCCCC----SS---SCCCCSSSCC
T ss_pred eEEECCCCCCeeecC----CC---CceECCCCCc
Confidence 469999999998621 12 2247999985
No 3
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=75.15 E-value=0.79 Score=32.77 Aligned_cols=33 Identities=15% Similarity=0.549 Sum_probs=26.5
Q ss_pred CccccccCcccccceee--ccCCceEeecCCCccccccc
Q 026819 2 EYRCVKCGFRIKTLFVQ--YSPGNIRLMKCENCRAVADE 38 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~--y~~~~i~l~~C~~C~~~~Dk 38 (232)
+..|.+|+..-..+|++ ..++ +.|..|+-.--+
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g----~LCNACGl~~~~ 42 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG----IQCNACFIYQRK 42 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC----CCSSHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC----ccchHHHHHHHH
Confidence 57899999999999999 6555 789999854433
No 4
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=75.05 E-value=1.3 Score=39.73 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=26.4
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D 37 (232)
...|.+||...+.+-.+++.|. ..|.+||-+.|
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~---~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGD---VVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCS---CCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCC---EecCCCCeEcc
Confidence 3579999998777777887654 48999999875
No 5
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=74.97 E-value=1.2 Score=40.33 Aligned_cols=38 Identities=18% Similarity=0.522 Sum_probs=28.6
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccccc-ccccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD-EYIEC 42 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D-kYiE~ 42 (232)
..+|.+||...+.+..+|+.|. +.|.+||-+.+ +.|..
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~---~vC~~CGlVl~e~~iD~ 59 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGD---VVCALCGLVLSDKLVDT 59 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTE---EEETTTCBEEESCCBCH
T ss_pred CCcCCCCCCCCCceeEECCCCc---EEeCCCCCCccCccccc
Confidence 3579999996678888897764 58999998764 55643
No 6
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=74.90 E-value=1 Score=34.29 Aligned_cols=32 Identities=25% Similarity=0.723 Sum_probs=25.8
Q ss_pred CccccccCcccccceee--ccCCceEeecCCCccc
Q 026819 2 EYRCVKCGFRIKTLFVQ--YSPGNIRLMKCENCRA 34 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~--y~~~~i~l~~C~~C~~ 34 (232)
.+-|-.|+++....+.+ |.+ .+.+.+|+.|++
T Consensus 13 ~FTC~~C~tRs~k~iSk~aY~~-GvViv~C~gC~n 46 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSKQAYEK-GTVLISCPHCKV 46 (100)
T ss_dssp EEEETTTTEEEEEEEEHHHHHT-SEEEEECTTTCC
T ss_pred EEEccCCCCcchhhcCHHHhhC-CEEEEEcCCCcc
Confidence 46799999998777765 666 458889999997
No 7
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=72.85 E-value=2 Score=38.57 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=40.6
Q ss_pred ccccccCcccccceeeccC-------CceEeecCCCccc---cccccc--cc-----hhHHHHHHHHhcCcchhheeecc
Q 026819 3 YRCVKCGFRIKTLFVQYSP-------GNIRLMKCENCRA---VADEYI--EC-----EIMILLIDLILHKPQAYRHLLYN 65 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~-------~~i~l~~C~~C~~---~~DkYi--E~-----d~~i~~iDl~L~k~~ayrHllfN 65 (232)
-.|.+||+.-+--|....+ +.+|.+.|++|+. +.|.-- +. |.--+.+|++..+.+ |+..=+|
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~dp~adDlatL~LDl~a~e~G-y~r~~~N 301 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDG-YLRRSPN 301 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHHHHHHTTHHHHHHHHHTT-CEECCCC
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhhccCCCCCcchhHHHHHHHHHHHHhcC-CCCCCCC
Confidence 4699999984433443433 6899999999994 333211 12 333477888888755 7776655
Q ss_pred c
Q 026819 66 V 66 (232)
Q Consensus 66 ~ 66 (232)
-
T Consensus 302 p 302 (309)
T 2fiy_A 302 L 302 (309)
T ss_dssp T
T ss_pred c
Confidence 3
No 8
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=69.47 E-value=2.4 Score=35.65 Aligned_cols=38 Identities=18% Similarity=0.542 Sum_probs=28.3
Q ss_pred ccccccCcccccceeeccCCceEeecCCCcccccc-ccccch
Q 026819 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD-EYIECE 43 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D-kYiE~d 43 (232)
..|.+||...+++..+++.|. ..|.+||-+.| +.|+..
T Consensus 22 ~~CPECGs~~t~IV~D~erGE---~VCsdCGLVLEEriID~G 60 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGD---VVCALCGLVLSDKLVDTR 60 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTE---EEETTTCBBCCCCCBCHH
T ss_pred eECcCCCCcCCeEEEeCCCCE---EEEcCCCCCcCCceeECC
Confidence 479999996677777887753 58999999764 555443
No 9
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=67.69 E-value=1.8 Score=33.37 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.5
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
-|+|.+||.+- ...|=.++..+..|.+|...
T Consensus 5 ~~~C~eC~~~~---~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 5 YVICEECGKEF---MDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CEECTTTCCEE---SCSSSTTTTSCCCCTTTCSS
T ss_pred CCccccCCChh---hHHHHHHhCCeeechhhccc
Confidence 57899999872 12244557788899999864
No 10
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=67.53 E-value=2.4 Score=28.05 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=18.1
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCR 33 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~ 33 (232)
-|.|-.||+..+.-=.+.=|+. +||.||
T Consensus 3 iY~C~rCg~~fs~~el~~lP~I----rCpyCG 30 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGV----RCPYCG 30 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSS----CCTTTC
T ss_pred EEEeeccCCCccHHHHhhCCCc----ccCccC
Confidence 4789999998755433333443 899998
No 11
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=65.99 E-value=2 Score=28.08 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=25.4
Q ss_pred CCccccccCcccccceeeccCCceEeecCCCccc
Q 026819 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
+...|.+|+..-..+|++=..|. +.|..|+-
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~---~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH---YLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC---CBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC---ccchHHHH
Confidence 45789999999999999876653 78998875
No 12
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.12 E-value=1.6 Score=29.25 Aligned_cols=24 Identities=29% Similarity=0.726 Sum_probs=18.4
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
..+|-.||.+++ .....|.+||..
T Consensus 14 k~iCpkC~a~~~----------~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNP----------WGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEEC----------TTCSSCSSSSSC
T ss_pred CccCCCCCCcCC----------CCceecCCCCCc
Confidence 468999999843 267789999864
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.25 E-value=5.4 Score=26.94 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=21.1
Q ss_pred ccccccCcccccceeeccCCceEeecCCCcccccc
Q 026819 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D 37 (232)
..|.+||..- +-..+..+. ..|.+||-+.+
T Consensus 12 ~~Cp~C~~~~--lv~D~~~ge---~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGD---MICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCC---EECTTTCCEEC
T ss_pred ccCcCCCCCc--eeEeCCCCe---EEeCCCCCEEe
Confidence 4799998743 545565543 68999998754
No 14
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=61.11 E-value=4.9 Score=29.39 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCccccccCcccccceeec-----cCCceEeecCCCccccccc
Q 026819 1 MEYRCVKCGFRIKTLFVQY-----SPGNIRLMKCENCRAVADE 38 (232)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y-----~~~~i~l~~C~~C~~~~Dk 38 (232)
|+..|.+|+++++.-=..+ +++.-+...||.|++..++
T Consensus 1 M~~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 1 MEITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHH
Confidence 4567788887764422222 3334455677877776655
No 15
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.51 E-value=4.2 Score=31.13 Aligned_cols=26 Identities=27% Similarity=0.683 Sum_probs=18.5
Q ss_pred CccccccCcccccceeeccCCceEeecCCCccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
+|+|-+||..- .+..-+-.+||.|+.
T Consensus 67 p~~C~~CG~~F-------~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 67 PAQCRKCGFVF-------KAEINIPSRCPKCKS 92 (105)
T ss_dssp CCBBTTTCCBC-------CCCSSCCSSCSSSCC
T ss_pred CcChhhCcCee-------cccCCCCCCCcCCCC
Confidence 68999999985 111224468999985
No 16
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=56.83 E-value=2.7 Score=29.93 Aligned_cols=25 Identities=36% Similarity=0.877 Sum_probs=17.8
Q ss_pred ccccccCcccccceeeccCCceEeecCCCcccc
Q 026819 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.+|. ||... |..+.-+-.+|+ ||+.
T Consensus 5 v~C~-C~~~~------~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 5 FRCD-CGRAL------YSREGAKTRKCV-CGRT 29 (71)
T ss_dssp EEET-TSCCE------EEETTCSEEEET-TTEE
T ss_pred EECC-CCCEE------EEcCCCcEEECC-CCCe
Confidence 4788 98873 444455778999 9974
No 17
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=56.56 E-value=2.7 Score=32.06 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=19.2
Q ss_pred CccccccCcccccceeeccCCceEee-cCCCccccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLM-KCENCRAVA 36 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~-~C~~C~~~~ 36 (232)
.++|-+||+..+-- . ... .||.|+...
T Consensus 73 ~~~C~~CG~~~e~~-------~-~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPN-------A-LDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSC-------C-STTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCC-------C-CCCCcCccccCCC
Confidence 46899999986541 1 234 799999873
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=54.90 E-value=4.6 Score=24.82 Aligned_cols=29 Identities=31% Similarity=0.784 Sum_probs=22.1
Q ss_pred cccccCcccccceeeccCCceEeecCCCcccc
Q 026819 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.|-+|+.|=..|-++ +..-..+|..||..
T Consensus 2 lC~~C~~peT~l~~~---~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKE---GRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEE---TTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEe---CCcEEEEhhcCCCc
Confidence 589999997777663 35566789999974
No 19
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=50.27 E-value=8 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.0
Q ss_pred eecCCCcccc--ccccccchhHHHHHHH
Q 026819 26 LMKCENCRAV--ADEYIECEIMILLIDL 51 (232)
Q Consensus 26 l~~C~~C~~~--~DkYiE~d~~i~~iDl 51 (232)
...|++||+. .+++-|++..=+..||
T Consensus 9 ~~~C~~C~~~i~~~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 9 QVPCEKCGSLVPVWDMPEHMDYHFALEL 36 (39)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHHHHHHH
T ss_pred CcccccccCcCCcccccchhhHHHHHHH
Confidence 4479999986 7778888877666664
No 20
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=49.78 E-value=7.1 Score=26.93 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=14.3
Q ss_pred cCCCccc-----------cccccccchhHH
Q 026819 28 KCENCRA-----------VADEYIECEIMI 46 (232)
Q Consensus 28 ~C~~C~~-----------~~DkYiE~d~~i 46 (232)
.||.||. +-|||-+|-..+
T Consensus 20 ~CP~CG~~T~~~hParfSp~Dky~~yR~~~ 49 (60)
T 2apo_B 20 ICPKCGEKTVIPKPPKFSLEDRWGKYRRML 49 (60)
T ss_dssp BCSSSCSBCBCCCCCCCCTTCTTHHHHHHH
T ss_pred cCcCCCCcCCCCCCCCCCCCcchHHHHHHH
Confidence 6999994 479999887443
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=49.70 E-value=9.3 Score=24.49 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=20.1
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D 37 (232)
...|.+||.+ .|-..+..+ -..|+.||.+.+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g---elvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG---EIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT---EEEESSSCCBCC
T ss_pred cEeCcCCCCc--ceEEcCCCC---eEECcccCCccc
Confidence 3579999883 343344443 258999998654
No 22
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=47.59 E-value=4.4 Score=28.18 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=24.6
Q ss_pred CccccccCcccccceeeccCCceEeecCCCccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
+..|.+||..-..+|++=..|. +.|..||-
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~---~LCNACGl 36 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD---PVCNACGL 36 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC---CCCHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCC---chhhHHHH
Confidence 5689999999999998876554 78988883
No 23
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=47.15 E-value=5 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=23.6
Q ss_pred ccccccCcccccceeeccCCceEeecCCCccc
Q 026819 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
..|.+|+.....+|++-..|. +.|..||-
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~---~LCNaCGl 30 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ---PLCNACGL 30 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC---EECHHHHH
T ss_pred CcCCccCCCCCCccccCCCCC---cccHHHHH
Confidence 479999999999999875553 78988884
No 24
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=46.96 E-value=5.2 Score=28.02 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=24.6
Q ss_pred CccccccCcccccceeeccCCceEeecCCCccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
...|.+||..-..++++=..|. +.|..|+-
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~---~LCNaCGl 38 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQ---PLCNACGL 38 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTE---EECHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCC---CccHHHHH
Confidence 5689999999999999866553 77999974
No 25
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.97 E-value=12 Score=24.35 Aligned_cols=37 Identities=22% Similarity=0.580 Sum_probs=20.2
Q ss_pred CccccccCcccccce---eeccCCceEe-ecCCCccccccccc
Q 026819 2 EYRCVKCGFRIKTLF---VQYSPGNIRL-MKCENCRAVADEYI 40 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~---~~y~~~~i~l-~~C~~C~~~~DkYi 40 (232)
.++|..||.--+.-- +.+. .+.- -.||.|+.--+++.
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~--~lP~dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFD--QLPDDWCCPVCGVSKDQFS 44 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGG--GSCTTCBCTTTCCBGGGEE
T ss_pred EEECCCCCeEEeCCcCCCcchh--hCCCCCcCcCCCCcHHHcE
Confidence 589999996432100 0010 1110 27999998766653
No 26
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=40.92 E-value=11 Score=25.93 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=13.8
Q ss_pred cCCCccc-----------cccccccchhH
Q 026819 28 KCENCRA-----------VADEYIECEIM 45 (232)
Q Consensus 28 ~C~~C~~-----------~~DkYiE~d~~ 45 (232)
.||.||. +-|||-+|-..
T Consensus 19 ~CP~CG~~t~~ahParfSP~Dky~~yR~~ 47 (60)
T 2aus_D 19 TCPVCGEKTKVAHPPRFSPEDPYGEYRRR 47 (60)
T ss_dssp BCTTTCSBCEESSCCCCCSCCTTHHHHHH
T ss_pred cCcCCCCccCCCCCCCCCCCCchHHHHHH
Confidence 5999994 47999888743
No 27
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.01 E-value=15 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCccccccCcccccceeec-----cCCceEeecCCCcccccc
Q 026819 1 MEYRCVKCGFRIKTLFVQY-----SPGNIRLMKCENCRAVAD 37 (232)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y-----~~~~i~l~~C~~C~~~~D 37 (232)
|+-.|.+|+++.+.-=..| ..+.-+...||.|++.-.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHHH
Confidence 4567899998865321111 234567777888887643
No 28
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.06 E-value=20 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=23.6
Q ss_pred cccccCcccccceeeccCCceEeecCCCcccc
Q 026819 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.|-+|+.|=..|-+. +.+.+-..+|..||..
T Consensus 105 lC~~C~sPdT~L~~~-~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 105 LCPECENPETDLHVN-PKKQTIGNSCKACGYR 135 (157)
T ss_dssp SCTTTCCSCCEEEEE-TTTTEEEEECSSSCCE
T ss_pred ECCCCCCCccEEEEe-cCCCEEEEEccCCCCC
Confidence 599999997776543 3456677789999974
No 29
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.00 E-value=14 Score=25.52 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=25.0
Q ss_pred CccccccCcccccceeeccCC--ceEeecCCCccc-cccccccchh
Q 026819 2 EYRCVKCGFRIKTLFVQYSPG--NIRLMKCENCRA-VADEYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~--~i~l~~C~~C~~-~~DkYiE~d~ 44 (232)
.++|-.|+.++..-+.+..+. +..--.|..|++ +.++++|.|.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g 60 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKG 60 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCEEETT
T ss_pred CCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCEeECC
Confidence 478999999987554433221 112235777776 4555656653
No 30
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.65 E-value=9.5 Score=25.06 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.9
Q ss_pred cccccCccc
Q 026819 4 RCVKCGFRI 12 (232)
Q Consensus 4 ~Ci~C~~~v 12 (232)
-|.+||.++
T Consensus 21 ~CP~CG~~~ 29 (50)
T 3j20_Y 21 FCPRCGPGV 29 (50)
T ss_dssp ECSSSCSSC
T ss_pred cCCCCCCce
Confidence 477777754
No 31
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=36.32 E-value=9.3 Score=30.06 Aligned_cols=11 Identities=27% Similarity=1.117 Sum_probs=8.5
Q ss_pred ccccccCcccc
Q 026819 3 YRCVKCGFRIK 13 (232)
Q Consensus 3 ~~Ci~C~~~v~ 13 (232)
.+|-+||+..+
T Consensus 71 ~~C~~CG~~~~ 81 (139)
T 3a43_A 71 FKCRNCNYEWK 81 (139)
T ss_dssp EEETTTCCEEE
T ss_pred EECCCCCCEEe
Confidence 57999998743
No 32
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.86 E-value=30 Score=25.43 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=27.1
Q ss_pred CccccccCcccccceeeccCCceEe---ecCCCccccc----cccccchhH
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAVA----DEYIECEIM 45 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~~----DkYiE~d~~ 45 (232)
.++|..|+.++..-+..-..+..=. -+|..|++.- +.|.+.|.-
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~ 53 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGR 53 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTB
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCe
Confidence 5789999999865532222222222 3577787754 378888853
No 33
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=35.74 E-value=12 Score=32.34 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=19.5
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.+.|-.||+... . .+-+++....+.|++|+.-
T Consensus 134 ~f~C~~C~~~~~-v-~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 134 VFECRGCMRHHA-V-TQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEETTTCCEEE-E-ECSSSSCCCCSCCTTTCCC
T ss_pred EEEcCCCCCEEE-E-EecCCcccCCCcCCCCCCC
Confidence 378999997531 1 1112233456789999963
No 34
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=34.83 E-value=29 Score=26.26 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=25.8
Q ss_pred CccccccCcccccceeeccCCceEe---ecCCCccccc----cccccchh
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAVA----DEYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~~----DkYiE~d~ 44 (232)
.++|-.|+.++..-+..-..+..=. -+|..|++.- +.|.|.|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg 110 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 110 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSS
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECC
Confidence 3689999999865432112222222 3577787754 36888774
No 35
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=33.59 E-value=20 Score=26.70 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=19.9
Q ss_pred ccccccCccccc-----ceeeccCCceE-----eecCCCcccc
Q 026819 3 YRCVKCGFRIKT-----LFVQYSPGNIR-----LMKCENCRAV 35 (232)
Q Consensus 3 ~~Ci~C~~~v~~-----l~~~y~~~~i~-----l~~C~~C~~~ 35 (232)
..|..||..... .-..|++..+. -..|++||..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~ 45 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEES 45 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCE
Confidence 579999987321 12245555444 4468888863
No 36
>2x5r_A Hypothetical protein ORF126; unknown function, viral protein; 2.00A {Pyrobaculum spherical virus}
Probab=31.42 E-value=31 Score=26.01 Aligned_cols=10 Identities=60% Similarity=1.202 Sum_probs=8.8
Q ss_pred CccccccCcc
Q 026819 2 EYRCVKCGFR 11 (232)
Q Consensus 2 ~~~Ci~C~~~ 11 (232)
.|+|+.||..
T Consensus 77 kprcvkcgaa 86 (127)
T 2x5r_A 77 KPRCVKCGAA 86 (127)
T ss_dssp CCBCTTTCCB
T ss_pred Ccceeeeccc
Confidence 5899999986
No 37
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.22 E-value=26 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred cccccCcccccceeeccCCceEeecCCCcccc
Q 026819 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.|-+|+.|=..|-++- .+.+-..+|..||..
T Consensus 98 lC~~C~sPdT~L~k~~-~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 98 LCPECENPETDLHVNP-KKQTIGNSCKACGYR 128 (170)
T ss_dssp SCTTTSSSCEEEEEET-TTTEEEEEETTTCCC
T ss_pred ECCCCCCCccEEEEec-CCCEEEEEccccCCc
Confidence 5999999977765422 345566789999964
No 38
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.92 E-value=19 Score=26.49 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=12.9
Q ss_pred cCCCccccccccccch
Q 026819 28 KCENCRAVADEYIECE 43 (232)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (232)
.||.|+.--+.+.+.+
T Consensus 70 ~CPvCga~K~~F~~i~ 85 (87)
T 1s24_A 70 CCPDCGATKEDYVLYE 85 (87)
T ss_dssp CCSSSCCCGGGEEECS
T ss_pred CCCCCCCCHHHhhhcc
Confidence 5999999888877654
No 39
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=28.54 E-value=14 Score=28.26 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=23.8
Q ss_pred CccccccCcccccceeeccCCceEeecCCCccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
+..|.+||.....+|++=..| .+.|..|+-
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g---~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG---HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS---CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC---CCcCcchhh
Confidence 578999999999999986554 268999985
No 40
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=27.92 E-value=26 Score=25.79 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=14.6
Q ss_pred eccCCceEeecCCC-cccc
Q 026819 18 QYSPGNIRLMKCEN-CRAV 35 (232)
Q Consensus 18 ~y~~~~i~l~~C~~-C~~~ 35 (232)
+.|..|||+..|++ |++-
T Consensus 25 qssdknirlkicdnscnqe 43 (109)
T 3u4z_A 25 QSSDKNIRLKICDNSCNQE 43 (109)
T ss_dssp ECCSSCEEEEEECSSCSSC
T ss_pred hcCCCceEEEeecccccce
Confidence 45667999999998 8874
No 41
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.70 E-value=27 Score=25.29 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=18.7
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.|.|..||.+ ..++. +. ..-+|++|++.
T Consensus 27 ~y~Cp~CG~~--~v~r~-at---GiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGED--RVDRQ-GT---GIWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCCE--EEEEE-ET---TEEEETTTCCE
T ss_pred cCcCCCCCCc--ceecc-CC---CeEECCCCCCE
Confidence 5789999974 23222 22 35689999985
No 42
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=27.14 E-value=17 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=11.8
Q ss_pred cCCCccc-cccccccchh
Q 026819 28 KCENCRA-VADEYIECEI 44 (232)
Q Consensus 28 ~C~~C~~-~~DkYiE~d~ 44 (232)
+|=+||+ ++|||-||..
T Consensus 6 RCFTCGkvi~~k~~~y~~ 23 (66)
T 4ayb_N 6 RCFTCGSLIADKWQPFIT 23 (66)
T ss_dssp BCTTTCCBCHHHHHHHHH
T ss_pred ccCCCcHhHHHHHHHHHH
Confidence 5777877 4677777654
No 43
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=26.83 E-value=22 Score=26.41 Aligned_cols=27 Identities=26% Similarity=0.726 Sum_probs=19.4
Q ss_pred ccccccCcccccceeeccCCceEeecCCCccccc
Q 026819 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVA 36 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~ 36 (232)
+.|- |+++.-++ .++.+ ..|++||...
T Consensus 49 FkC~-C~~Rt~sl-~r~P~-----~~C~~Cg~~~ 75 (92)
T 2kwq_A 49 FKCP-CGNRTISL-DRLPK-----KHCSTCGLFK 75 (92)
T ss_dssp EECT-TSCEEEES-SSSCC-----SCCTTTCSCC
T ss_pred EECC-CCCceeEe-eeCCC-----CCCCCCCCCc
Confidence 4685 99998777 34544 3799999863
No 44
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=26.04 E-value=20 Score=28.21 Aligned_cols=30 Identities=30% Similarity=0.692 Sum_probs=19.0
Q ss_pred ccccccCcccccceeeccCCceEeecCCCccccccccccc
Q 026819 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIEC 42 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~DkYiE~ 42 (232)
.+|-+||+.. |.|. ..|++|+....+.+|.
T Consensus 48 ~rC~~CG~~~------~PPr----~~Cp~C~s~~~~~ve~ 77 (145)
T 3irb_A 48 SKCSKCGRIF------VPAR----SYCEHCFVKIENYVEI 77 (145)
T ss_dssp EECTTTCCEE------ESCC----SEETTTTEECCEEEEC
T ss_pred EEeCCCCcEE------cCch----hhCcCCCCCceeeeee
Confidence 4688888754 3332 2588888766666663
No 45
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=26.02 E-value=29 Score=24.70 Aligned_cols=27 Identities=26% Similarity=0.714 Sum_probs=18.9
Q ss_pred CccccccCcc-cccceeeccCCceEeecCCCcccc
Q 026819 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 2 ~~~Ci~C~~~-v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.|.|..||.. ++.. ..-+=+|++|++.
T Consensus 26 ky~C~fCgk~~vkR~-------a~GIW~C~~C~~~ 53 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRG-------AAGIWTCSCCKKT 53 (72)
T ss_dssp CBCCSSCCSSCBSBC-------SSSCBCCSSSCCC
T ss_pred CccCCCCCCceeEec-------CCCeEECCCCCCE
Confidence 5789999976 3331 2346689999874
No 46
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.33 E-value=25 Score=22.97 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=24.8
Q ss_pred CccccccCcccccceeeccCCceEee---cCCCcccc--ccccccchh
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLM---KCENCRAV--ADEYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~---~C~~C~~~--~DkYiE~d~ 44 (232)
.++|-.|+.++..-+.... +..=.. .|..|++. -+.|.|.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 51 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAM-GKQWHVEHFVCAKCEKPFLGHRHYERKG 51 (66)
T ss_dssp CCEETTTTEECCSCEECCT-TSBEETTTCBCTTTCCBCSSSCCEEETT
T ss_pred CCCCcccCCEecceEEEEC-ccccccCcCEECCCCCCCCCCceEeECC
Confidence 4789999999864433222 222222 46777763 236777764
No 47
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=25.30 E-value=20 Score=24.41 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=16.4
Q ss_pred CccccccCcccccceeeccCCceEeecCCCccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (232)
..||-.|+.+.+- +-+.|.+||.
T Consensus 19 k~ICrkC~ARnp~----------~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALNPI----------RATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEECT----------TCSSCTTTCC
T ss_pred hhhhccccCcCCc----------ccccccCCCC
Confidence 3578888887643 5568888873
No 48
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=25.28 E-value=15 Score=26.13 Aligned_cols=18 Identities=28% Similarity=0.659 Sum_probs=12.5
Q ss_pred ccccccCcccccceeecc
Q 026819 3 YRCVKCGFRIKTLFVQYS 20 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~ 20 (232)
-+|-.||.++.+.|.+|.
T Consensus 5 VRCFTCGkvi~~~we~y~ 22 (70)
T 1twf_J 5 VRCFSCGKVVGDKWESYL 22 (70)
T ss_dssp SBCTTTCCBCTTCHHHHH
T ss_pred eecCCCCCChHHHHHHHH
Confidence 367777777777777774
No 49
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=24.92 E-value=34 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.829 Sum_probs=19.2
Q ss_pred CccccccCcc-cccceeeccCCceEeecCCCcccc
Q 026819 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 2 ~~~Ci~C~~~-v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
.|.|..||.. ++.. ..-+=+|++|++.
T Consensus 27 ky~C~fCgk~~vkR~-------a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRA-------STSIWVCGHCGYK 54 (73)
T ss_pred CccCCCCCCceeEEE-------EeEEEECCCCCcE
Confidence 5789999974 5443 2345789999985
No 50
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=24.75 E-value=11 Score=25.68 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=10.9
Q ss_pred cccccCcccccceeecc
Q 026819 4 RCVKCGFRIKTLFVQYS 20 (232)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~ 20 (232)
+|-.||.++.+.|.+|.
T Consensus 5 RCFTCGkvi~~~we~y~ 21 (55)
T 1ef4_A 5 RCLSCGKPVSAYFNEYQ 21 (55)
T ss_dssp SCSCTTSCCHHHHHHHH
T ss_pred ecCCCCCChhHHHHHHH
Confidence 56666666666666664
No 51
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=24.54 E-value=17 Score=29.73 Aligned_cols=26 Identities=31% Similarity=0.695 Sum_probs=17.8
Q ss_pred ccccccCcccccceeeccCCceEeecCCCcccc
Q 026819 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
|.|.+|+..|.. -+.| .-.|++|++.
T Consensus 43 ~ACp~CnKKV~~----~~~g---~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLK----YHGD---SFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEE----ETTT---EEEETTTTEE
T ss_pred hhchhhCCEeee----CCCC---eEECCCCCCC
Confidence 578999988753 1222 2369999987
No 52
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.20 E-value=22 Score=23.73 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.4
Q ss_pred cCCCccccccccccch
Q 026819 28 KCENCRAVADEYIECE 43 (232)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (232)
.||.|+.--+++.+.+
T Consensus 38 ~CP~Cga~K~~F~~~~ 53 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMIE 53 (55)
T ss_dssp CCTTTCCCGGGEEECC
T ss_pred cCCCCCCCHHHceecc
Confidence 6999999888887765
No 53
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.57 E-value=25 Score=25.48 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=13.4
Q ss_pred cCCCccccccccccch
Q 026819 28 KCENCRAVADEYIECE 43 (232)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (232)
.||.|+.--+++.+.+
T Consensus 62 ~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMVE 77 (81)
T ss_dssp CCTTTCCCGGGEEEEC
T ss_pred cCCCCCCCHHHcEEcc
Confidence 6999999888887654
No 54
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.53 E-value=37 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.676 Sum_probs=12.4
Q ss_pred cCCCccccccccccc
Q 026819 28 KCENCRAVADEYIEC 42 (232)
Q Consensus 28 ~C~~C~~~~DkYiE~ 42 (232)
.||.|+.--+++.+.
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 699999988887664
No 55
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.45 E-value=36 Score=23.72 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=24.4
Q ss_pred CccccccCcccccceeeccCCceEe---ecCCCcccc-cc-ccccchh
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAV-AD-EYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~-~D-kYiE~d~ 44 (232)
.++|-.|+.++..-+.+.. +..-. -.|..|++. .+ .|++.|.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 71 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKAR-DKYRHPECFVCADCNLNLKQKGYFFVEG 71 (89)
T ss_dssp CCBCTTTCCBCCSCCEESS-SCEECTTTCCCSSSCCCTTTSCCEEETT
T ss_pred CCCcccCCCEecccEEEEC-CceECccCCEecCCCCCCCCCCeEeECC
Confidence 3689999999876443322 22222 246667764 33 5777763
No 56
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.01 E-value=47 Score=22.83 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=24.1
Q ss_pred CccccccCcccccc-eeeccCCceE---eecCCCccc-cccccccchh
Q 026819 2 EYRCVKCGFRIKTL-FVQYSPGNIR---LMKCENCRA-VADEYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l-~~~y~~~~i~---l~~C~~C~~-~~DkYiE~d~ 44 (232)
.++|..|+.++..- +.+ ..+..= --.|..|++ +.++|+|.|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~-a~~~~wH~~CF~C~~C~~~L~~~~~~~~g 61 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL-ALDKQWHVSCFKCQTCSVILTGEYISKDG 61 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE-ETTEEECTTTCBCSSSCCBCSSCCEEETT
T ss_pred CCCCcCcCCeeCCCeEEE-ECCcccccccCCcCcCCCCcCCCeEEECC
Confidence 46899999998521 111 112111 235677766 4567888773
No 57
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.78 E-value=33 Score=22.62 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.7
Q ss_pred cCCCccccccccccc
Q 026819 28 KCENCRAVADEYIEC 42 (232)
Q Consensus 28 ~C~~C~~~~DkYiE~ 42 (232)
.||.|+.--+.+.+.
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 699999987776553
No 58
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.45 E-value=32 Score=23.06 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=23.3
Q ss_pred CccccccCcccc--cceeeccCCceEe---ecCCCcccccc--ccccchh
Q 026819 2 EYRCVKCGFRIK--TLFVQYSPGNIRL---MKCENCRAVAD--EYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~--~l~~~y~~~~i~l---~~C~~C~~~~D--kYiE~d~ 44 (232)
.++|..|+.++. +-..+.. +..-. -.|..|++.-+ .|.+.|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 59 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSN-GELYHEQCFVCAQCFQQFPEGLFYEFEG 59 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEET-TEEECTTTCCCTTTCCCCGGGCSEEETT
T ss_pred CCCchhcCCccCCCceEEEeC-ccEeccccCeECCCCCCCCCCCeEeECC
Confidence 478999999984 3222221 21222 24666776433 5777664
No 59
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.05 E-value=48 Score=22.08 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=12.3
Q ss_pred cCCCccccccccccch
Q 026819 28 KCENCRAVADEYIECE 43 (232)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (232)
.||.|+.--|++.+.+
T Consensus 38 ~CP~Cg~~K~~F~~~~ 53 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEVE 53 (54)
T ss_dssp BCTTTCCBGGGEEECC
T ss_pred cCcCCCCcHHHceEcc
Confidence 6999999877776543
No 60
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.76 E-value=49 Score=24.55 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=21.5
Q ss_pred CccccccCcccccceeeccCCce---EeecCCCccccc----cccccchh
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNI---RLMKCENCRAVA----DEYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i---~l~~C~~C~~~~----DkYiE~d~ 44 (232)
.++|-.|+.++..-+..-..+.. .--.|..|++.- +.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g 54 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 54 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETT
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECC
Confidence 46777777776543211111211 112466666643 35766664
No 61
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=21.59 E-value=36 Score=22.65 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=4.4
Q ss_pred cccccCcc
Q 026819 4 RCVKCGFR 11 (232)
Q Consensus 4 ~Ci~C~~~ 11 (232)
.|.+||..
T Consensus 20 fCPkCG~~ 27 (55)
T 2k4x_A 20 FCPRCGPG 27 (55)
T ss_dssp CCTTTTTT
T ss_pred cCcCCCCc
Confidence 45566654
No 62
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.99 E-value=35 Score=23.00 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=24.6
Q ss_pred CccccccCcccccceeeccCC--ceEeecCCCccccc---cccccchh
Q 026819 2 EYRCVKCGFRIKTLFVQYSPG--NIRLMKCENCRAVA---DEYIECEI 44 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~--~i~l~~C~~C~~~~---DkYiE~d~ 44 (232)
.++|-.|+.++..-+....+. +..--.|..|++.- +.|.+.|.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~ 52 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGS 52 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETT
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCC
Confidence 478999999986643332211 11123577777753 46666653
No 63
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=20.97 E-value=36 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=17.6
Q ss_pred CccccccC--c-----ccccceeeccCCceEeecCCCccccc
Q 026819 2 EYRCVKCG--F-----RIKTLFVQYSPGNIRLMKCENCRAVA 36 (232)
Q Consensus 2 ~~~Ci~C~--~-----~v~~l~~~y~~~~i~l~~C~~C~~~~ 36 (232)
+-.|++|| . |...+...-+.-.+.-..|..|+.-+
T Consensus 5 ~~~C~~C~~~~C~~~CP~~ai~~~~~~~~i~~~~C~~Cg~C~ 46 (106)
T 7fd1_A 5 TDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCE 46 (106)
T ss_dssp CGGGTTTCCCHHHHHCTTCCEEECSSCEEECTTTCCCCCTTG
T ss_pred ccccCCccCcHHHHHcCccceEcCCCcEEECcccCCChhhhH
Confidence 34799998 2 44443222111123335677777543
No 64
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=20.77 E-value=38 Score=26.26 Aligned_cols=16 Identities=19% Similarity=0.775 Sum_probs=10.2
Q ss_pred ccccccCc-----ccccceee
Q 026819 3 YRCVKCGF-----RIKTLFVQ 18 (232)
Q Consensus 3 ~~Ci~C~~-----~v~~l~~~ 18 (232)
-.|+.||. |...++..
T Consensus 51 ~~Ci~C~~C~~~CP~~ai~~~ 71 (182)
T 3i9v_9 51 EKCIGCSLCAAACPAYAIYVE 71 (182)
T ss_dssp BSCCCCCHHHHHCTTCCEEEE
T ss_pred ccCcccccchhhCCcccEEee
Confidence 47999984 55555443
No 65
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=20.51 E-value=44 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.650 Sum_probs=23.8
Q ss_pred CccccccCcccc-cce-----------eeccCCceEeecCCCcccccc
Q 026819 2 EYRCVKCGFRIK-TLF-----------VQYSPGNIRLMKCENCRAVAD 37 (232)
Q Consensus 2 ~~~Ci~C~~~v~-~l~-----------~~y~~~~i~l~~C~~C~~~~D 37 (232)
.|.|-.||.+-+ .-. ..++.+.+.+-+|++||+..+
T Consensus 119 ~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~r 166 (335)
T 1x3z_A 119 KPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITR 166 (335)
T ss_dssp SCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEE
T ss_pred CCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccc
Confidence 588999998742 222 112334577789999998754
No 66
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=20.50 E-value=25 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=15.5
Q ss_pred CccccccCcccccceeeccCCceEeecCCCcccc
Q 026819 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (232)
+..|.+|..-+ .-+.||+|+..
T Consensus 11 ~~AC~~C~~~~------------~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHYIT------------SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCBEE------------SSSSCTTTCCC
T ss_pred hhhHHhCCccc------------cCCcCCCccCC
Confidence 56799998833 22379999953
No 67
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.11 E-value=50 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=19.0
Q ss_pred CccccccCcc-c-cc---ceeeccCC-----ceEeecCCCccc
Q 026819 2 EYRCVKCGFR-I-KT---LFVQYSPG-----NIRLMKCENCRA 34 (232)
Q Consensus 2 ~~~Ci~C~~~-v-~~---l~~~y~~~-----~i~l~~C~~C~~ 34 (232)
...|..||.. . +. .-..|+.. ++.-..|+.||.
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE 44 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEE 44 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCC
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCC
Confidence 3579999864 2 22 22346554 344556777775
No 68
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=20.10 E-value=16 Score=32.16 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=16.4
Q ss_pred ccccccCcccccce--eeccCCceEeecCCCcccc
Q 026819 3 YRCVKCGFRIKTLF--VQYSPGNIRLMKCENCRAV 35 (232)
Q Consensus 3 ~~Ci~C~~~v~~l~--~~y~~~~i~l~~C~~C~~~ 35 (232)
.+|..|+++.+.-. .+...+ ++-.|++|+..
T Consensus 140 ~~C~~C~~~~~~~~~~~~i~~~--~~P~C~~Cgg~ 172 (285)
T 3glr_A 140 ATCTVCQRPFPGEDIRADVMAD--RVPRCPVCTGV 172 (285)
T ss_dssp EEETTTCCEEEGGGGHHHHHTT--CCCBCTTTCCB
T ss_pred EEECCCCCcCCHHHHHHHhhcC--CCCCCCCCCCc
Confidence 46888887643211 101111 34578888854
No 69
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.04 E-value=59 Score=21.18 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=15.5
Q ss_pred cccccCcccccceeec---cC--CceEeecCCCcccc
Q 026819 4 RCVKCGFRIKTLFVQY---SP--GNIRLMKCENCRAV 35 (232)
Q Consensus 4 ~Ci~C~~~v~~l~~~y---~~--~~i~l~~C~~C~~~ 35 (232)
.|.+||+. +..|.+- +. +--.--.|.+|+..
T Consensus 17 ~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 17 TCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp CCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred ECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 47888873 2333332 11 11233468888763
Done!