Query 026821
Match_columns 232
No_of_seqs 165 out of 294
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 23:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 98.8 8.1E-09 2.8E-13 83.3 6.0 55 177-232 2-57 (142)
2 2hx0_A Putative DNA-binding pr 98.7 1.1E-08 3.7E-13 83.7 6.2 59 172-231 13-72 (154)
3 2dt4_A Hypothetical protein PH 98.5 4.6E-08 1.6E-12 78.6 3.3 49 178-226 10-58 (143)
4 2h6l_A Hypothetical protein; N 98.4 7.8E-08 2.7E-12 77.5 3.3 49 178-226 10-58 (146)
5 3htn_A Putative DNA binding pr 98.1 2E-06 6.9E-11 69.9 3.7 47 178-224 16-62 (149)
6 2ezd_A High mobility group pro 96.4 0.0014 4.9E-08 40.3 2.1 16 150-165 3-18 (26)
7 3hwu_A Putative DNA-binding pr 96.2 0.004 1.4E-07 50.2 3.9 45 179-223 14-58 (147)
8 4dyq_A Gene 1 protein; GP1, oc 80.6 0.48 1.6E-05 37.3 0.9 14 103-116 4-17 (140)
9 1t3g_A X-linked interleukin-1 67.5 2.3 8E-05 34.0 1.9 28 184-211 51-78 (159)
10 2j67_A TOLL like receptor 10; 52.1 4.7 0.00016 33.0 1.2 29 183-211 73-101 (178)
11 1fyx_A TOLL-like receptor 2; b 45.7 9.5 0.00032 29.9 2.0 29 183-211 43-71 (149)
12 4gqw_A CBS domain-containing p 43.1 18 0.00063 26.0 3.1 42 175-216 89-130 (152)
13 4esy_A CBS domain containing m 40.1 20 0.00069 27.1 3.0 41 174-214 21-61 (170)
14 3j0a_A TOLL-like receptor 5; m 38.6 19 0.00063 34.8 3.1 29 183-211 711-739 (844)
15 3sl7_A CBS domain-containing p 37.9 24 0.00083 26.3 3.1 42 175-216 102-143 (180)
16 4i95_A Putative uncharacterize 36.0 23 0.00079 29.3 2.8 26 203-230 36-61 (142)
17 2rih_A Conserved protein with 31.9 37 0.0013 24.5 3.2 40 173-212 7-46 (141)
18 1o50_A CBS domain-containing p 31.1 44 0.0015 24.7 3.5 40 175-215 100-139 (157)
19 3kpb_A Uncharacterized protein 29.2 37 0.0013 23.6 2.7 38 177-214 7-44 (122)
20 3fio_A A cystathionine beta-sy 28.2 1.1E+02 0.0036 19.3 4.6 30 181-210 2-31 (70)
21 2yzi_A Hypothetical protein PH 28.1 59 0.002 23.1 3.7 41 173-213 9-49 (138)
22 1vr9_A CBS domain protein/ACT 27.1 46 0.0016 26.5 3.2 41 172-212 14-54 (213)
23 4esy_A CBS domain containing m 26.7 36 0.0012 25.7 2.4 40 174-214 108-147 (170)
24 3ghd_A A cystathionine beta-sy 26.6 1.1E+02 0.0036 20.8 4.6 38 181-218 2-39 (70)
25 3k2v_A Putative D-arabinose 5- 26.4 53 0.0018 24.0 3.3 43 172-214 29-73 (149)
26 3lfr_A Putative metal ION tran 26.1 70 0.0024 23.1 3.8 40 175-215 74-113 (136)
27 1pbj_A Hypothetical protein; s 25.5 56 0.0019 22.6 3.1 38 176-214 6-43 (125)
28 2nyc_A Nuclear protein SNF4; b 24.0 1.1E+02 0.0037 21.6 4.5 36 180-215 92-127 (144)
29 3k2v_A Putative D-arabinose 5- 23.5 61 0.0021 23.7 3.1 37 175-211 99-135 (149)
30 2o16_A Acetoin utilization pro 22.8 1.2E+02 0.0041 22.5 4.7 38 176-214 83-120 (160)
31 2rih_A Conserved protein with 22.7 1.1E+02 0.0037 21.9 4.3 39 176-215 76-114 (141)
32 3nqr_A Magnesium and cobalt ef 22.5 1E+02 0.0034 21.8 4.0 38 177-215 75-112 (127)
33 3h16_A TIR protein; bacteria T 22.2 50 0.0017 25.6 2.5 30 183-212 56-85 (154)
34 3kpb_A Uncharacterized protein 22.1 60 0.002 22.5 2.7 41 175-215 66-106 (122)
35 2ef7_A Hypothetical protein ST 22.1 71 0.0024 22.5 3.1 41 175-215 71-111 (133)
36 2rc3_A CBS domain; in SITU pro 22.0 60 0.0021 23.0 2.8 40 175-215 78-117 (135)
37 4fry_A Putative signal-transdu 21.0 63 0.0021 23.7 2.7 39 176-215 83-121 (157)
38 2emq_A Hypothetical conserved 20.7 86 0.0029 22.8 3.4 42 172-213 12-55 (157)
39 2o16_A Acetoin utilization pro 20.6 69 0.0024 23.8 2.9 41 173-213 7-47 (160)
40 1o50_A CBS domain-containing p 20.4 97 0.0033 22.8 3.7 40 172-211 17-57 (157)
41 2js7_A Myeloid differentiation 20.2 6.7 0.00023 31.4 -3.0 29 183-211 53-82 (160)
42 3oi8_A Uncharacterized protein 20.2 1.1E+02 0.0038 22.6 4.0 37 177-214 109-145 (156)
43 3lqn_A CBS domain protein; csg 20.0 72 0.0025 23.1 2.9 41 174-214 18-60 (150)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=98.77 E-value=8.1e-09 Score=83.31 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=48.5
Q ss_pred ceeEEEEeCCCCcHHHHHHHhhhc-CCceEEEecCCCeeeeeEecCCCCCCCceeeC
Q 026821 177 FTPHVITVKAGEDISSKIFAFSQQ-GPRTVCILSASGAICNVTLRQPTMSGGTVTYE 232 (232)
Q Consensus 177 ftPHVItV~~GEDV~~kI~sFaqq-g~raICILSAnGaVSnVTLRQP~ssGgtvTYE 232 (232)
|++|+|++.+||||.++|..||++ +-++.|||++.|++++|+||+++... +++||
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~ 57 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVS 57 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEEC
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecC
Confidence 689999999999999999999986 55689999999999999999999754 45553
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=98.75 E-value=1.1e-08 Score=83.70 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=51.3
Q ss_pred cCCCCceeEEEEeCCCCcHHHHHHHhhh-cCCceEEEecCCCeeeeeEecCCCCCCCceee
Q 026821 172 VGGVGFTPHVITVKAGEDISSKIFAFSQ-QGPRTVCILSASGAICNVTLRQPTMSGGTVTY 231 (232)
Q Consensus 172 ~~g~~ftPHVItV~~GEDV~~kI~sFaq-qg~raICILSAnGaVSnVTLRQP~ssGgtvTY 231 (232)
+.+..+++|+|++.+||||.++|..||+ ++-++.|||++.|++++|+||+++... +++|
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~ 72 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSL 72 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEE
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEec
Confidence 4456789999999999999999999996 566789999999999999999998755 4544
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=98.51 E-value=4.6e-08 Score=78.56 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=43.8
Q ss_pred eeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeeeeeEecCCCCCC
Q 026821 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG 226 (232)
Q Consensus 178 tPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVSnVTLRQP~ssG 226 (232)
++|+|++.+||||.++|..||++.....|++++.|++++|+||+++...
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~ 58 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEK 58 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTT
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCcc
Confidence 6999999999999999999999877776777999999999999876543
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=98.45 E-value=7.8e-08 Score=77.50 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=43.0
Q ss_pred eeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeeeeeEecCCCCCC
Q 026821 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG 226 (232)
Q Consensus 178 tPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVSnVTLRQP~ssG 226 (232)
++|+|++.+||||.++|..||++.....|++++.|++++|+||+++...
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~ 58 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEK 58 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCC
Confidence 5899999999999999999999766555555999999999999987665
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=98.07 E-value=2e-06 Score=69.87 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=43.6
Q ss_pred eeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeeeeeEecCCCC
Q 026821 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM 224 (232)
Q Consensus 178 tPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVSnVTLRQP~s 224 (232)
+.++|.+.+||||.++|..||++.....|++++.|++++|+||+++.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~ 62 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNP 62 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECT
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCC
Confidence 58999999999999999999999888888889999999999998654
No 6
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.44 E-value=0.0014 Score=40.26 Aligned_cols=16 Identities=56% Similarity=0.881 Sum_probs=14.3
Q ss_pred cccCCCCCCCCCCCCc
Q 026821 150 SAKRHRGRPPGSGKKQ 165 (232)
Q Consensus 150 ~~kR~RGRP~GSknK~ 165 (232)
..||+||||.|||||-
T Consensus 3 tpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKG 18 (26)
T ss_dssp SCCCCSSCCTTCCCCS
T ss_pred CCcCCCCCcCcccccC
Confidence 4699999999999984
No 7
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=96.15 E-value=0.004 Score=50.21 Aligned_cols=45 Identities=7% Similarity=0.156 Sum_probs=40.8
Q ss_pred eEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeeeeeEecCCC
Q 026821 179 PHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPT 223 (232)
Q Consensus 179 PHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVSnVTLRQP~ 223 (232)
-.++.+.+||||.+.|..||++..-.-+++++-|++++++|+-.+
T Consensus 14 ~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~ 58 (147)
T 3hwu_A 14 GYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYD 58 (147)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeec
Confidence 488999999999999999999998888888999999999998543
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=80.63 E-value=0.48 Score=37.28 Aligned_cols=14 Identities=43% Similarity=0.871 Sum_probs=6.6
Q ss_pred cccCCCCCCCCCCC
Q 026821 103 KKKRGRPRKYTPDG 116 (232)
Q Consensus 103 KKKRGRPRKY~pDg 116 (232)
|+|+|||.||.++-
T Consensus 4 ~~k~GRPtk~t~e~ 17 (140)
T 4dyq_A 4 EPKAGRPSDYMPEV 17 (140)
T ss_dssp ------CCSCCTTH
T ss_pred CCCCCCCCCCCHHH
Confidence 89999999998763
No 9
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=67.51 E-value=2.3 Score=34.03 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=25.5
Q ss_pred eCCCCcHHHHHHHhhhcCCceEEEecCC
Q 026821 184 VKAGEDISSKIFAFSQQGPRTVCILSAS 211 (232)
Q Consensus 184 V~~GEDV~~kI~sFaqqg~raICILSAn 211 (232)
+.+|++|.+.|..--++..+.|+|||.+
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 5689999999999999999999999864
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=52.07 E-value=4.7 Score=33.00 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=26.1
Q ss_pred EeCCCCcHHHHHHHhhhcCCceEEEecCC
Q 026821 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (232)
Q Consensus 183 tV~~GEDV~~kI~sFaqqg~raICILSAn 211 (232)
.+.+|++|.+.|..--++..+.|+|||.+
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 36789999999999999999999999965
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=45.72 E-value=9.5 Score=29.90 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=26.1
Q ss_pred EeCCCCcHHHHHHHhhhcCCceEEEecCC
Q 026821 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (232)
Q Consensus 183 tV~~GEDV~~kI~sFaqqg~raICILSAn 211 (232)
.+.+|+++.+.|..--++..+.|+|||.+
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 36789999999999999999999999964
No 12
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=43.14 E-value=18 Score=25.98 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeeee
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICN 216 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVSn 216 (232)
.-+++.+++|...+++.+.+-.|.+++-+.++|+..+|.+.-
T Consensus 89 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~G 130 (152)
T 4gqw_A 89 DLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVG 130 (152)
T ss_dssp HHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEE
T ss_pred HhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEE
Confidence 345677889999999999998999999999999998876543
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=40.11 E-value=20 Score=27.15 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 174 g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
..-|+..+++|...+.|.+.+-.+.+++-+++.|+..+|.+
T Consensus 21 ~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~l 61 (170)
T 4esy_A 21 RDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHL 61 (170)
T ss_dssp GGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCE
T ss_pred HHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccE
Confidence 34578899999999999999999999999999999988754
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=38.61 E-value=19 Score=34.78 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=26.7
Q ss_pred EeCCCCcHHHHHHHhhhcCCceEEEecCC
Q 026821 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (232)
Q Consensus 183 tV~~GEDV~~kI~sFaqqg~raICILSAn 211 (232)
...+|++|++.|..--++..|.|||||.+
T Consensus 711 d~~~G~~~~~~i~~~i~~sr~~i~vls~~ 739 (844)
T 3j0a_A 711 DFVPGENRIANIQDAIWNSRKIVCLVSRH 739 (844)
T ss_dssp SCCSSSCHHHHHHHHHHHSSEEEEEECTT
T ss_pred ccCCCchHHHHHHHHHHHhCeEEEEeccc
Confidence 46799999999999999999999999976
No 15
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=37.87 E-value=24 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=35.3
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeeee
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICN 216 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVSn 216 (232)
.-+++.+++|...+++.+.+-.|.+.+-+.++|+..+|.+.-
T Consensus 102 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vG 143 (180)
T 3sl7_A 102 DLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIG 143 (180)
T ss_dssp HHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEE
T ss_pred HHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEE
Confidence 446677899999999999999999999999999998876543
No 16
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=35.96 E-value=23 Score=29.25 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=20.6
Q ss_pred ceEEEecCCCeeeeeEecCCCCCCCcee
Q 026821 203 RTVCILSASGAICNVTLRQPTMSGGTVT 230 (232)
Q Consensus 203 raICILSAnGaVSnVTLRQP~ssGgtvT 230 (232)
..+=|||..|++.|++++. .++.++|
T Consensus 36 n~lKIlSdDgtF~Ni~m~~--~~~aiIt 61 (142)
T 4i95_A 36 NTFKVLSDDGRIVNFTIRP--GTDAIIT 61 (142)
T ss_dssp EEEEEECTTSEEEEEECCT--TSCCEEE
T ss_pred ccEEEEcCCCcEEEEEEec--CCCcEEE
Confidence 4577999999999999993 3566654
No 17
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=31.93 E-value=37 Score=24.47 Aligned_cols=40 Identities=3% Similarity=-0.010 Sum_probs=33.9
Q ss_pred CCCCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCC
Q 026821 173 GGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASG 212 (232)
Q Consensus 173 ~g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnG 212 (232)
++.-|++.+++|...+.|.+.+-.|.+.+-..+.|+..+|
T Consensus 7 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~ 46 (141)
T 2rih_A 7 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN 46 (141)
T ss_dssp GGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE
T ss_pred HHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC
Confidence 3445677899999999999998889888888999998876
No 18
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=31.08 E-value=44 Score=24.73 Aligned_cols=40 Identities=8% Similarity=0.098 Sum_probs=33.8
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
.-+++ +++|...+++.+.+-.|.+.+-+.+.|+..+|.+-
T Consensus 100 ~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~v 139 (157)
T 1o50_A 100 EIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIV 139 (157)
T ss_dssp HHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred HHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEE
Confidence 34667 89999999999999999999999999998777543
No 19
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=29.20 E-value=37 Score=23.57 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=32.3
Q ss_pred ceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 177 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
|++.+++|.....+.+.+-.|.+.+...+.|+..+|.+
T Consensus 7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~ 44 (122)
T 3kpb_A 7 LSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKL 44 (122)
T ss_dssp CCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBE
T ss_pred hCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCE
Confidence 55678889999999999888999988999999977754
No 20
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=28.17 E-value=1.1e+02 Score=19.33 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=26.6
Q ss_pred EEEeCCCCcHHHHHHHhhhcCCceEEEecC
Q 026821 181 VITVKAGEDISSKIFAFSQQGPRTVCILSA 210 (232)
Q Consensus 181 VItV~~GEDV~~kI~sFaqqg~raICILSA 210 (232)
+++|...+.+.+.+-.|.+++-..+-|+..
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~ 31 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG 31 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 678999999999988888888888999887
No 21
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=28.08 E-value=59 Score=23.10 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=34.2
Q ss_pred CCCCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCe
Q 026821 173 GGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGA 213 (232)
Q Consensus 173 ~g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGa 213 (232)
++.-|+..+++|...+.+.+.+-.|.+.+-..+.|+..+|.
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~ 49 (138)
T 2yzi_A 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGN 49 (138)
T ss_dssp GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 34557788999999999999888899888899999986653
No 22
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=27.06 E-value=46 Score=26.54 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=35.9
Q ss_pred cCCCCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCC
Q 026821 172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASG 212 (232)
Q Consensus 172 ~~g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnG 212 (232)
.++..++..+++|.....+.+.+-.+.+.+-+.+.|+..+|
T Consensus 14 ~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~ 54 (213)
T 1vr9_A 14 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREG 54 (213)
T ss_dssp BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTS
T ss_pred CHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCC
Confidence 56788899999999999999988888888889999998665
No 23
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=26.68 E-value=36 Score=25.71 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=34.2
Q ss_pred CCCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 174 g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
..-|+..+++|...+++.+.+-.|.+++-+.+.|+- +|.+
T Consensus 108 ~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~l 147 (170)
T 4esy_A 108 SAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVP 147 (170)
T ss_dssp HHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEE
T ss_pred hhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEE
Confidence 345778899999999999999999999999999997 5544
No 24
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=26.61 E-value=1.1e+02 Score=20.81 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=30.7
Q ss_pred EEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeeeeeE
Q 026821 181 VITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVT 218 (232)
Q Consensus 181 VItV~~GEDV~~kI~sFaqqg~raICILSAnGaVSnVT 218 (232)
+|+|.+.+-|.+.+-.+.+++-.++.|+-..-.|-=||
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT 39 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVT 39 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEE
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEE
Confidence 68999999999999999999999999997543333333
No 25
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=26.41 E-value=53 Score=24.02 Aligned_cols=43 Identities=7% Similarity=0.027 Sum_probs=36.3
Q ss_pred cCCCCcee--EEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 172 VGGVGFTP--HVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 172 ~~g~~ftP--HVItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
.++.-|++ .+++|...+.|.+.+-.|.+.+-..+.|+..+|.+
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~ 73 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNI 73 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBE
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcE
Confidence 34556788 89999999999999999999999999999977643
No 26
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=26.08 E-value=70 Score=23.13 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
.-+++ +++|...+++.+.+-.|.+++-+.+.|+..+|.+-
T Consensus 74 ~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lv 113 (136)
T 3lfr_A 74 KLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVA 113 (136)
T ss_dssp GTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEE
T ss_pred HHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence 34567 89999999999999999999989999998876543
No 27
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=25.50 E-value=56 Score=22.65 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=31.2
Q ss_pred CceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 176 ~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
.|++.+++|...+.+.+.+-.|.+.+.+.+.|+. +|.+
T Consensus 6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~ 43 (125)
T 1pbj_A 6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVR 43 (125)
T ss_dssp HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEE
T ss_pred hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCee
Confidence 3566788999999999988888888888899998 6643
No 28
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=24.01 E-value=1.1e+02 Score=21.64 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=30.1
Q ss_pred EEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 180 HVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 180 HVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
.+++|...+++.+.+-.|.+.+-+.+.|+..+|.+.
T Consensus 92 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~ 127 (144)
T 2nyc_A 92 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLV 127 (144)
T ss_dssp --CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEE
T ss_pred CCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEE
Confidence 588999999999999999999999999999877543
No 29
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=23.46 E-value=61 Score=23.70 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCC
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAn 211 (232)
.-+++.+++|...+++.+.+-.|.+++-+.+.|+...
T Consensus 99 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 135 (149)
T 3k2v_A 99 DVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD 135 (149)
T ss_dssp HHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT
T ss_pred HHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 3456778999999999999999999998999999765
No 30
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=22.76 E-value=1.2e+02 Score=22.49 Aligned_cols=38 Identities=5% Similarity=0.116 Sum_probs=32.1
Q ss_pred CceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 176 ~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
-+++-+++|...+++.+.+-.|.+.+-+.++|+.. |.+
T Consensus 83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~l 120 (160)
T 2o16_A 83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVL 120 (160)
T ss_dssp HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEE
T ss_pred HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEE
Confidence 34567899999999999999999999889999987 654
No 31
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=22.67 E-value=1.1e+02 Score=21.91 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=32.6
Q ss_pred CceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 176 ~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
-++..+++|... ++.+.+-.|.+.+-+.++|+..+|.+-
T Consensus 76 ~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~ 114 (141)
T 2rih_A 76 IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELV 114 (141)
T ss_dssp GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEE
Confidence 455678999999 999999999999989999999777543
No 32
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=22.50 E-value=1e+02 Score=21.83 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 177 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
+++ +++|...+++.+.+-.|.+.+-+.+.|+..+|.+-
T Consensus 75 m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~ 112 (127)
T 3nqr_A 75 LRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVS 112 (127)
T ss_dssp CBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEE
T ss_pred cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence 345 57899999999999999999999999998877543
No 33
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=22.19 E-value=50 Score=25.55 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=25.5
Q ss_pred EeCCCCcHHHHHHHhhhcCCceEEEecCCC
Q 026821 183 TVKAGEDISSKIFAFSQQGPRTVCILSASG 212 (232)
Q Consensus 183 tV~~GEDV~~kI~sFaqqg~raICILSAnG 212 (232)
++..|+++...|..--++....|+|||.+=
T Consensus 56 ~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y 85 (154)
T 3h16_A 56 SLRPGDSLRRSIDKGLGSSRFGIVVLSTHF 85 (154)
T ss_dssp EECTTCCHHHHHHHHHTSEEEEEEEEEHHH
T ss_pred hCCCccHHHHHHHHHHHhCcEEEEEeCcch
Confidence 578999999999988888888899998653
No 34
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=22.10 E-value=60 Score=22.48 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=33.7
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
.-+.+.+++|...+++.+.+-.|.+++-+.+.|+..+|.+.
T Consensus 66 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~ 106 (122)
T 3kpb_A 66 EIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106 (122)
T ss_dssp GTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEE
T ss_pred HHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEE
Confidence 34556778899999999988889999989999999877554
No 35
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=22.08 E-value=71 Score=22.52 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=33.8
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
.-+++.+++|...+++.+.+-.|.+.+-+.+.|+..+|.+-
T Consensus 71 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~ 111 (133)
T 2ef7_A 71 EFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLK 111 (133)
T ss_dssp GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred HHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Confidence 34566788999999999988889999989999998877543
No 36
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=22.05 E-value=60 Score=23.05 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=33.2
Q ss_pred CCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 175 ~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
.-+++.+++|...+++.+.+-.|.+.+-+.++|+. +|.+-
T Consensus 78 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~ 117 (135)
T 2rc3_A 78 EIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVI 117 (135)
T ss_dssp GTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEE
T ss_pred HhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEE
Confidence 44667789999999999999999999988999998 67543
No 37
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=21.02 E-value=63 Score=23.68 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.7
Q ss_pred CceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCeee
Q 026821 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (232)
Q Consensus 176 ~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaVS 215 (232)
-+++.+++|...+++.+.+-.|.+.+-+.++|+. +|.+-
T Consensus 83 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~ 121 (157)
T 4fry_A 83 IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLI 121 (157)
T ss_dssp HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEE
T ss_pred HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEE
Confidence 3556788999999999999999999999999998 66543
No 38
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=20.71 E-value=86 Score=22.77 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=34.9
Q ss_pred cCCCCcee--EEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCe
Q 026821 172 VGGVGFTP--HVITVKAGEDISSKIFAFSQQGPRTVCILSASGA 213 (232)
Q Consensus 172 ~~g~~ftP--HVItV~~GEDV~~kI~sFaqqg~raICILSAnGa 213 (232)
.++.-+++ .+++|...+.|.+.+-.|.+.+-+.+.|+..+|.
T Consensus 12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~ 55 (157)
T 2emq_A 12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYK 55 (157)
T ss_dssp BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCC
T ss_pred cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCC
Confidence 34566777 8899999999999888899988889999987653
No 39
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=20.63 E-value=69 Score=23.83 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=34.3
Q ss_pred CCCCceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCe
Q 026821 173 GGVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGA 213 (232)
Q Consensus 173 ~g~~ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGa 213 (232)
++.-|++.+++|...+.|.+.+-.|.+.+-+.+.|+..+|.
T Consensus 7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~ 47 (160)
T 2o16_A 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKK 47 (160)
T ss_dssp GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCB
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 34567788999999999999888888888889999987764
No 40
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=20.45 E-value=97 Score=22.78 Aligned_cols=40 Identities=8% Similarity=-0.071 Sum_probs=34.5
Q ss_pred cCCCCceeEEEEeCCCCcHHHHHHHhhhcCCce-EEEecCC
Q 026821 172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGPRT-VCILSAS 211 (232)
Q Consensus 172 ~~g~~ftPHVItV~~GEDV~~kI~sFaqqg~ra-ICILSAn 211 (232)
.++..|+..+++|.....+.+.+-.|.+.+-+. +.|+..+
T Consensus 17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~ 57 (157)
T 1o50_A 17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN 57 (157)
T ss_dssp HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT
T ss_pred cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC
Confidence 355678889999999999999998899988888 9999776
No 41
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=20.23 E-value=6.7 Score=31.36 Aligned_cols=29 Identities=21% Similarity=0.191 Sum_probs=23.3
Q ss_pred EeCCCCcHHHHHHHhhh-cCCceEEEecCC
Q 026821 183 TVKAGEDISSKIFAFSQ-QGPRTVCILSAS 211 (232)
Q Consensus 183 tV~~GEDV~~kI~sFaq-qg~raICILSAn 211 (232)
.+.+|++|.+.|..--+ +..+.|+|||.+
T Consensus 53 d~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~ 82 (160)
T 2js7_A 53 DVLPGTCVWSIASELIEKRCRRMVVVVSDD 82 (160)
T ss_dssp SSSSSCSCCCCCGGGHHHHEEEEEEECCHH
T ss_pred CCCCCCcHHHHHHHHHHHhCCEEEEEECcc
Confidence 36679998888888777 688899999864
No 42
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=20.20 E-value=1.1e+02 Score=22.65 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=31.7
Q ss_pred ceeEEEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 177 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
+++ +++|....++.+.+-.|.+++-+.+.|+..+|.+
T Consensus 109 m~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~ 145 (156)
T 3oi8_A 109 LRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGT 145 (156)
T ss_dssp CBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSE
T ss_pred cCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCE
Confidence 456 7899999999999999999998999999887654
No 43
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=20.01 E-value=72 Score=23.08 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=33.7
Q ss_pred CCCceeE--EEEeCCCCcHHHHHHHhhhcCCceEEEecCCCee
Q 026821 174 GVGFTPH--VITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (232)
Q Consensus 174 g~~ftPH--VItV~~GEDV~~kI~sFaqqg~raICILSAnGaV 214 (232)
+.-|+|. +++|...+.+.+.+-.|.+++-..+.|+..+|.+
T Consensus 18 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~ 60 (150)
T 3lqn_A 18 KDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKL 60 (150)
T ss_dssp HHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE
T ss_pred hhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCE
Confidence 3456665 8999999999999888999998999999877643
Done!