Query 026823
Match_columns 232
No_of_seqs 205 out of 588
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.3 0.011 3.6E-07 44.9 6.6 71 113-207 5-76 (86)
2 1vd2_A Protein kinase C, IOTA 96.2 0.015 5.1E-07 44.2 6.9 58 113-195 5-62 (89)
3 2kkc_A Sequestosome-1; P62, PB 95.9 0.014 4.6E-07 45.4 5.9 62 113-197 4-80 (102)
4 2ktr_A Sequestosome-1; autopha 95.0 0.048 1.7E-06 43.3 6.2 62 113-197 19-95 (117)
5 1q1o_A Cell division control p 90.7 1.1 3.9E-05 34.4 7.8 75 114-207 5-86 (98)
6 1oey_J P40-PHOX, neutrophil cy 82.6 1.7 5.7E-05 34.0 4.7 40 131-196 28-67 (107)
7 1pqs_A Cell division control p 82.3 1.2 4E-05 32.7 3.5 58 131-207 7-65 (77)
8 2bkf_A Zinc-finger protein NBR 80.4 4.7 0.00016 30.4 6.3 54 115-194 7-60 (87)
9 1wj6_A KIAA0049 protein, RSGI 80.0 5.2 0.00018 31.0 6.6 66 114-207 14-79 (101)
10 1oey_A P67-PHOX, neutrophil cy 63.5 33 0.0011 25.3 7.4 70 115-211 6-78 (83)
11 1e8p_A Endoglucanase, dockerin 59.2 2.5 8.6E-05 28.5 0.5 13 181-193 20-32 (46)
12 3o27_A Putative uncharacterize 57.8 3.1 0.0001 30.1 0.8 22 173-194 38-59 (68)
13 2npt_A Dual specificity mitoge 41.2 56 0.0019 25.2 5.6 57 114-195 14-71 (106)
14 3brc_A Conserved protein of un 39.9 7.6 0.00026 32.1 0.6 12 13-24 99-110 (156)
15 2j4m_A Endoglucanase 45A; dock 35.0 9.9 0.00034 29.3 0.5 13 181-193 21-33 (100)
16 2i1s_A Hypothetical protein; m 25.5 59 0.002 26.5 3.7 38 114-151 8-47 (188)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.27 E-value=0.011 Score=44.90 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred CcceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeE
Q 026823 113 NAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWM 192 (232)
Q Consensus 113 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM 192 (232)
+..-||..-|..--=-.||-....+|++|..-|+++|.+ ...+|++.|.|.|||++
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLl 60 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLL 60 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEE
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEe
Confidence 356788888887444456666778999999999999985 13468999999999999
Q ss_pred EccCC-Chhhhhhcce
Q 026823 193 LVGDV-PWGMFVESCK 207 (232)
Q Consensus 193 LVGDv-PW~mFv~svk 207 (232)
-+-+. -..+=+.++|
T Consensus 61 pInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 61 PLTNDDSLHRALASGP 76 (86)
T ss_dssp ECCSHHHHHHHTTSSS
T ss_pred eecCHHHHHHHHHhCC
Confidence 87654 4555556666
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.16 E-value=0.015 Score=44.15 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=44.7
Q ss_pred CcceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeE
Q 026823 113 NAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWM 192 (232)
Q Consensus 113 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM 192 (232)
+.+=|||+-.|.-+ -+.+...-+|++|...|.++|... .+..+++.|.|.|||+.
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCE
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcc
Confidence 35678999999844 444444669999999999999851 13468999999999987
Q ss_pred Ecc
Q 026823 193 LVG 195 (232)
Q Consensus 193 LVG 195 (232)
-+-
T Consensus 60 tis 62 (89)
T 1vd2_A 60 TVS 62 (89)
T ss_dssp ECC
T ss_pred ccc
Confidence 553
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.94 E-value=0.014 Score=45.39 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=46.3
Q ss_pred CcceeEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCC
Q 026823 113 NAAFVKVSMDGA----PYLRKVDLRM-----------YNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNG 177 (232)
Q Consensus 113 ~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~ 177 (232)
.++-||++..|. .=-|++-|.. -.+|++|...++++|... .+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-----------------------~~ 60 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-----------------------RP 60 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-----------------------CC
Confidence 467899999762 3446655542 248999999999999751 24
Q ss_pred CCceeEEEcCCCCeEEccCC
Q 026823 178 SDYVPTYEDKDGDWMLVGDV 197 (232)
Q Consensus 178 sey~ltYeDkeGDwMLVGDv 197 (232)
..|.+.|.|.|||+.-+.+.
T Consensus 61 ~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 61 GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp SCEEEEEECTTCCEEEECSH
T ss_pred CcEEEEEECCCCCEEEecCH
Confidence 57999999999999877653
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.00 E-value=0.048 Score=43.35 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=45.5
Q ss_pred CcceeEEEecC----cccceeeecC-----------CCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCC
Q 026823 113 NAAFVKVSMDG----APYLRKVDLR-----------MYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNG 177 (232)
Q Consensus 113 ~~~~VKV~MdG----~pigRKVDL~-----------~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~ 177 (232)
+++-||++..| ..=-|++=|. .-.+|++|...++++|... .+
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-----------------------~~ 75 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-----------------------RP 75 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-----------------------CC
Confidence 36789999975 2234555554 1359999999999999741 24
Q ss_pred CCceeEEEcCCCCeEEccCC
Q 026823 178 SDYVPTYEDKDGDWMLVGDV 197 (232)
Q Consensus 178 sey~ltYeDkeGDwMLVGDv 197 (232)
..|.+.|.|.|||+.-+-..
T Consensus 76 ~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 76 GGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp SCEEEEEECTTCCEEEECSH
T ss_pred CcEEEEEECCCCCEEEecCH
Confidence 57999999999998876653
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=90.69 E-value=1.1 Score=34.42 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=54.6
Q ss_pred cceeEEEecCc------ccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcC
Q 026823 114 AAFVKVSMDGA------PYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDK 187 (232)
Q Consensus 114 ~~~VKV~MdG~------pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDk 187 (232)
+.-|||+-+.. .=.|.|=...--+|++|...+.+-|..++.. + . .....+-|+|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-----------------~-i-~~~~klkYkDE 65 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-----------------N-I-SPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-----------------C-C-CCCCCEEEECS
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-----------------c-c-cceeEEEEEcC
Confidence 46788887742 1236666778889999999999999863110 0 0 12468999999
Q ss_pred CCCeEEccC-CChhhhhhcce
Q 026823 188 DGDWMLVGD-VPWGMFVESCK 207 (232)
Q Consensus 188 eGDwMLVGD-vPW~mFv~svk 207 (232)
|||+...++ .=|+|-+.+++
T Consensus 66 dGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 66 DGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp SSCEEEECSHHHHHHHHHHHH
T ss_pred CCCEEEEcCHHHHHHHHHHHH
Confidence 999987776 58999888763
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.60 E-value=1.7 Score=34.02 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=32.3
Q ss_pred ecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccC
Q 026823 131 DLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD 196 (232)
Q Consensus 131 DL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD 196 (232)
||+..-.|.+|..-..+-|... +-+|-|.|.||||.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEEcc
Confidence 6788889999999999999751 347899999999965433
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=82.30 E-value=1.2 Score=32.72 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=42.2
Q ss_pred ecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccC-CChhhhhhcce
Q 026823 131 DLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD-VPWGMFVESCK 207 (232)
Q Consensus 131 DL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD-vPW~mFv~svk 207 (232)
=...--+|++|...+.+-|..+ . +.+ ......+-|+|.|||+...++ .=|+|=+.++|
T Consensus 7 ~V~~~i~f~~L~~kI~~kl~~~-~----~~~--------------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 7 LVEKVWNFDDLIMAINSKISNT-H----NNN--------------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp ECTTCCCSHHHHHHHHHHTTTT-T----SSC--------------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHccc-c----ccc--------------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 3445568999999999999853 1 111 023568999999999987665 68999888764
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=80.35 E-value=4.7 Score=30.42 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=41.5
Q ss_pred ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEc
Q 026823 115 AFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLV 194 (232)
Q Consensus 115 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV 194 (232)
.-+||.--|...=--|.-..--++++|-..+..+|+. +.++|+|-|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L--------------------------~~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEEcCCCCEEEE
Confidence 4578899998554446444477899999999999975 14689999999998755
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=80.00 E-value=5.2 Score=30.98 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=49.0
Q ss_pred cceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEE
Q 026823 114 AAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWML 193 (232)
Q Consensus 114 ~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwML 193 (232)
..-+||.--|...=--|.-..--++++|-..|..+|+. ..++|.|-|.|||-.-
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L--------------------------~~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVS 67 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC--------------------------SSBCCEEECTTSCEEC
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEecCCCCEEE
Confidence 34679999998655557555577899999999999975 1468999999999887
Q ss_pred ccCCChhhhhhcce
Q 026823 194 VGDVPWGMFVESCK 207 (232)
Q Consensus 194 VGDvPW~mFv~svk 207 (232)
| .-+.+|-+.+|
T Consensus 68 i--~Sq~E~eEAlk 79 (101)
T 1wj6_A 68 I--NSQGEYEEALK 79 (101)
T ss_dssp C--CSHHHHHHHHH
T ss_pred E--ecHHHHHHHHH
Confidence 7 44666655443
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=63.45 E-value=33 Score=25.31 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=53.7
Q ss_pred ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEc-CCCCeEE
Q 026823 115 AFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYED-KDGDWML 193 (232)
Q Consensus 115 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeD-keGDwML 193 (232)
.=|||+-. +.-.|....=-+|.+|...|.+=+... + .+-+|-|.| .+|.|++
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--~----------------------~~~~LsYk~~~s~~~vi 58 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--L----------------------EHTKLSYRPRDSNELVP 58 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--G----------------------GGCCEEECCTTCSSCEE
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--c----------------------ceeEEEeeCCCCCCeec
Confidence 45777776 777888888889999999999988751 1 123689999 6889999
Q ss_pred ccCCChhhhhhcce--eeEE
Q 026823 194 VGDVPWGMFVESCK--RLRI 211 (232)
Q Consensus 194 VGDvPW~mFv~svk--RLrI 211 (232)
.+|.=|+.-...++ ||++
T Consensus 59 ~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 59 LSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp CCTTTHHHHHTTCBTTEEEE
T ss_pred cChHHHHHHHHhccCCcEEE
Confidence 99999988777644 4554
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=59.23 E-value=2.5 Score=28.46 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.2
Q ss_pred eeEEEcCCCCeEE
Q 026823 181 VPTYEDKDGDWML 193 (232)
Q Consensus 181 ~ltYeDkeGDwML 193 (232)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5899999999954
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=57.81 E-value=3.1 Score=30.13 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=18.2
Q ss_pred hccCCCCceeEEEcCCCCeEEc
Q 026823 173 DLLNGSDYVPTYEDKDGDWMLV 194 (232)
Q Consensus 173 d~~~~sey~ltYeDkeGDwMLV 194 (232)
++..+-++.+++||++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 3445678999999999999886
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=41.16 E-value=56 Score=25.16 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=39.6
Q ss_pred cceeEEEec-CcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeE
Q 026823 114 AAFVKVSMD-GAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWM 192 (232)
Q Consensus 114 ~~~VKV~Md-G~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM 192 (232)
..-+.+... |..+--.||-..+=++.+|+.++.+..-.-|. -..-|||.+||..
T Consensus 14 ~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~-------------------------TAFeYEDE~gDRI 68 (106)
T 2npt_A 14 VLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATT-------------------------TAFEYEDEDGDRI 68 (106)
T ss_dssp CEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCC-------------------------SEEEEECTTSCEE
T ss_pred ceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcccee-------------------------eeeeeccccCCee
Confidence 345566665 66677788877778999999999887654222 1467999999988
Q ss_pred Ecc
Q 026823 193 LVG 195 (232)
Q Consensus 193 LVG 195 (232)
-|-
T Consensus 69 TVR 71 (106)
T 2npt_A 69 TVR 71 (106)
T ss_dssp EEC
T ss_pred EEc
Confidence 773
No 14
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.93 E-value=7.6 Score=32.07 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=9.5
Q ss_pred cccccCCCCCCC
Q 026823 13 TELRLGLPGNRV 24 (232)
Q Consensus 13 TELrLGLPG~~~ 24 (232)
.-=|||.||+++
T Consensus 99 ARGRLGvPGSGS 110 (156)
T 3brc_A 99 ARGRLGVPGSGS 110 (156)
T ss_dssp EEEECSSTTSCE
T ss_pred EcccccCCCCcc
Confidence 344999999986
No 15
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=35.04 E-value=9.9 Score=29.33 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.2
Q ss_pred eeEEEcCCCCeEE
Q 026823 181 VPTYEDKDGDWML 193 (232)
Q Consensus 181 ~ltYeDkeGDwML 193 (232)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5889999999954
No 16
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=25.48 E-value=59 Score=26.53 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=34.4
Q ss_pred cceeEEEecCc--ccceeeecCCCCChHHHHHHHHHhhcc
Q 026823 114 AAFVKVSMDGA--PYLRKVDLRMYNTYQDLYHALGKMFSS 151 (232)
Q Consensus 114 ~~~VKV~MdG~--pigRKVDL~~~~sY~~L~~aLe~MF~~ 151 (232)
..-+||..+|. +|=|.|.+..--+..+|-.+|+..|+-
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw 47 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDW 47 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTC
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 45679999986 799999999999999999999999983
Done!