BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026825
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231
N++D C G FS A G + +V +D+ + + C ++ +F E+
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAEF 118
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231
N++D C G FS A G + +V +D+ + + C ++ +F E+
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAEF 118
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231
N++D C G FS A G + +V +D+ + + C ++ +F E+
Sbjct: 69 NVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEENPDFAAEF 118
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QESN 226
G ++D +CG G FS + G VV +D SE+ +++ E+ + +ESN
Sbjct: 40 GKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDXIRKAREYAKSRESN 86
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
E+ ++ L V G I+D CG G F R + G S V+ LD SE L +
Sbjct: 31 EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARA 82
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAK 197
+L+ L P G ++D CG+G+ S FA+
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFAR 216
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
++D CG+G+ S AK+G V+A+D SE +L Q + ++
Sbjct: 49 VLDVGCGTGILSMFAAKAGA-KKVIAVDQSE-ILYQAMDIIR 88
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 167 ELMKGYLK---PVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
EL+K L+ P G ++D CG G F + + G+ S + +D +E+M+K C
Sbjct: 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIES--IGVDINEDMIKFC 79
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 167 ELMKGYLKPVLGGN--IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
+L K L GN ++D + G G + FA VVA D +E++LK F++
Sbjct: 25 DLAKLXQIAALKGNEEVLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGN 82
Query: 225 SNFPKEY 231
+ EY
Sbjct: 83 GHQQVEY 89
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
LK +ID CG G +I K F + +D S L+ E
Sbjct: 25 LKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 71
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
++D +CG+G+ S + + G FS V+++D S+ MLK
Sbjct: 60 VLDVACGTGVDSIMLVEEG-FS-VMSVDASDKMLK 92
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
LK +ID CG G +I K F + +D S L+ E
Sbjct: 15 LKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 61
>pdb|3UFB|A Chain A, Crystal Structure Of A Modification Subunit Of A Putative
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 530
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 139 MPFMSFIYERGWRQNFVWGGFPG----PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194
M +S +YE R+ G G P M + P LG +++D +CG+G F
Sbjct: 175 MHTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGF--- 231
Query: 195 FAKSGLFSLVVALDYSENMLK--QCYEFVQQESNFPKE 230
LV A ++ E K + E +Q+ S F E
Sbjct: 232 --------LVEAFEHLERQCKTVEDREVLQESSIFGGE 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,354,250
Number of Sequences: 62578
Number of extensions: 246203
Number of successful extensions: 502
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 16
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)