Query 026825
Match_columns 232
No_of_seqs 225 out of 2452
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11088 rrmA 23S rRNA methylt 99.7 3.4E-17 7.5E-22 142.6 12.7 127 71-222 2-133 (272)
2 COG2226 UbiE Methylase involve 99.5 7.5E-14 1.6E-18 119.2 6.2 93 112-228 10-102 (238)
3 PF01209 Ubie_methyltran: ubiE 99.5 6.7E-14 1.5E-18 119.6 5.8 92 112-227 6-98 (233)
4 PLN02233 ubiquinone biosynthes 99.2 7.3E-11 1.6E-15 102.4 7.0 84 115-222 35-119 (261)
5 PRK05785 hypothetical protein; 99.1 7.3E-11 1.6E-15 100.4 5.2 82 116-220 12-93 (226)
6 PF12847 Methyltransf_18: Meth 99.1 2.8E-10 6E-15 85.2 7.3 47 177-223 1-47 (112)
7 TIGR02752 MenG_heptapren 2-hep 99.1 2.7E-10 6E-15 96.3 6.8 56 170-225 38-94 (231)
8 KOG1540 Ubiquinone biosynthesi 99.0 5.9E-10 1.3E-14 95.2 5.4 92 112-227 59-156 (296)
9 PRK00107 gidB 16S rRNA methylt 99.0 3.1E-09 6.8E-14 87.9 9.6 69 147-226 26-94 (187)
10 PF13847 Methyltransf_31: Meth 99.0 1.3E-09 2.9E-14 86.5 6.9 51 177-227 3-54 (152)
11 PRK11207 tellurite resistance 98.9 2.4E-09 5.2E-14 89.1 7.8 57 168-226 21-77 (197)
12 TIGR00477 tehB tellurite resis 98.9 2.5E-09 5.5E-14 88.8 7.4 56 168-225 21-76 (195)
13 PRK11036 putative S-adenosyl-L 98.9 6.5E-09 1.4E-13 89.7 8.9 56 168-226 36-91 (255)
14 PRK15451 tRNA cmo(5)U34 methyl 98.9 6.2E-09 1.3E-13 89.5 7.8 49 177-225 56-106 (247)
15 TIGR02469 CbiT precorrin-6Y C5 98.9 1.7E-08 3.6E-13 76.5 9.1 57 169-225 11-67 (124)
16 TIGR00138 gidB 16S rRNA methyl 98.8 1.2E-08 2.6E-13 83.9 8.4 50 177-226 42-91 (181)
17 PRK08287 cobalt-precorrin-6Y C 98.8 2.2E-08 4.8E-13 82.3 9.8 59 167-225 21-79 (187)
18 COG2230 Cfa Cyclopropane fatty 98.8 1.1E-08 2.5E-13 89.2 8.2 61 166-227 61-121 (283)
19 PLN02244 tocopherol O-methyltr 98.8 1.6E-08 3.5E-13 91.0 9.4 50 176-226 117-166 (340)
20 PLN02585 magnesium protoporphy 98.8 3.9E-09 8.4E-14 94.1 5.3 46 177-224 144-189 (315)
21 PF03848 TehB: Tellurite resis 98.8 1.3E-08 2.8E-13 84.5 7.7 55 169-225 22-76 (192)
22 PRK07402 precorrin-6B methylas 98.8 2.4E-08 5.1E-13 82.8 9.3 60 167-226 30-89 (196)
23 TIGR03840 TMPT_Se_Te thiopurin 98.8 2.3E-08 5E-13 84.4 8.9 42 177-220 34-75 (213)
24 TIGR02021 BchM-ChlM magnesium 98.8 1.7E-08 3.6E-13 85.0 8.0 48 176-225 54-101 (219)
25 COG2227 UbiG 2-polyprenyl-3-me 98.8 9.5E-09 2.1E-13 87.3 6.2 53 176-231 58-110 (243)
26 PRK14103 trans-aconitate 2-met 98.8 2.6E-08 5.6E-13 85.9 7.8 53 168-220 20-72 (255)
27 PRK01683 trans-aconitate 2-met 98.8 2.1E-08 4.6E-13 86.3 7.2 56 168-223 22-77 (258)
28 PF05175 MTS: Methyltransferas 98.7 2.5E-08 5.5E-13 81.0 6.8 61 167-227 21-81 (170)
29 PRK13944 protein-L-isoaspartat 98.7 6.1E-08 1.3E-12 81.1 9.3 60 167-226 62-122 (205)
30 PRK10258 biotin biosynthesis p 98.7 3E-08 6.5E-13 85.1 7.6 54 167-222 32-85 (251)
31 PF13649 Methyltransf_25: Meth 98.7 2.7E-08 5.9E-13 73.6 6.1 45 181-225 1-48 (101)
32 TIGR03587 Pse_Me-ase pseudamin 98.7 3.5E-08 7.5E-13 82.7 7.4 46 177-222 43-88 (204)
33 KOG1270 Methyltransferases [Co 98.7 1.5E-08 3.3E-13 86.9 5.2 47 178-226 90-136 (282)
34 TIGR00080 pimt protein-L-isoas 98.7 5.1E-08 1.1E-12 82.0 8.4 60 167-226 67-127 (215)
35 PRK12335 tellurite resistance 98.7 3.8E-08 8.2E-13 86.5 7.7 48 177-226 120-167 (287)
36 PRK07580 Mg-protoporphyrin IX 98.7 4.7E-08 1E-12 82.4 8.0 48 176-225 62-109 (230)
37 PRK00121 trmB tRNA (guanine-N( 98.7 4.3E-08 9.3E-13 81.9 7.6 50 177-226 40-89 (202)
38 PF02353 CMAS: Mycolic acid cy 98.7 6.9E-08 1.5E-12 84.5 8.8 60 166-227 51-111 (273)
39 PRK13255 thiopurine S-methyltr 98.7 5.9E-08 1.3E-12 82.2 8.0 42 176-219 36-77 (218)
40 COG2264 PrmA Ribosomal protein 98.7 6E-08 1.3E-12 85.4 8.3 68 157-227 144-211 (300)
41 PRK14968 putative methyltransf 98.7 5.9E-08 1.3E-12 79.0 7.8 67 158-226 4-70 (188)
42 PRK13942 protein-L-isoaspartat 98.7 1E-07 2.2E-12 80.2 9.0 60 167-226 66-126 (212)
43 TIGR00537 hemK_rel_arch HemK-r 98.7 5.7E-08 1.2E-12 79.3 7.1 56 168-225 10-65 (179)
44 PTZ00098 phosphoethanolamine N 98.7 8.4E-08 1.8E-12 83.4 8.3 59 164-223 39-97 (263)
45 PRK15001 SAM-dependent 23S rib 98.7 7.5E-08 1.6E-12 87.8 8.1 60 166-225 217-276 (378)
46 PF06325 PrmA: Ribosomal prote 98.7 4.1E-08 8.9E-13 86.7 6.2 59 166-227 152-210 (295)
47 KOG1541 Predicted protein carb 98.6 5.4E-08 1.2E-12 81.7 6.2 48 173-222 46-93 (270)
48 PRK03522 rumB 23S rRNA methylu 98.6 5.2E-08 1.1E-12 86.8 6.5 58 167-226 163-220 (315)
49 TIGR00091 tRNA (guanine-N(7)-) 98.6 6.2E-08 1.3E-12 80.4 6.5 50 177-226 16-65 (194)
50 PRK00274 ksgA 16S ribosomal RN 98.6 1.2E-07 2.7E-12 82.7 8.5 56 165-222 30-85 (272)
51 PRK06202 hypothetical protein; 98.6 9.3E-08 2E-12 81.2 7.5 49 175-223 58-110 (232)
52 PRK00377 cbiT cobalt-precorrin 98.6 2.4E-07 5.2E-12 77.0 9.8 57 169-225 32-89 (198)
53 TIGR00740 methyltransferase, p 98.6 1E-07 2.2E-12 81.3 7.6 49 177-225 53-103 (239)
54 smart00650 rADc Ribosomal RNA 98.6 1.5E-07 3.2E-12 76.3 7.9 54 168-223 4-57 (169)
55 PF08241 Methyltransf_11: Meth 98.6 1E-07 2.2E-12 68.3 6.1 42 182-225 1-43 (95)
56 PRK00517 prmA ribosomal protei 98.6 9.9E-08 2.1E-12 82.2 7.1 49 177-226 119-167 (250)
57 PRK13168 rumA 23S rRNA m(5)U19 98.6 1.5E-07 3.3E-12 87.6 8.7 59 166-226 286-344 (443)
58 PRK00312 pcm protein-L-isoaspa 98.6 2.5E-07 5.4E-12 77.5 9.2 58 167-226 68-125 (212)
59 PLN02396 hexaprenyldihydroxybe 98.6 9.9E-08 2.1E-12 85.3 6.9 47 176-224 130-176 (322)
60 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 1.2E-07 2.6E-12 79.0 6.7 51 172-222 34-85 (223)
61 TIGR00452 methyltransferase, p 98.6 2.4E-07 5.2E-12 82.6 8.9 51 167-218 111-161 (314)
62 PRK09489 rsmC 16S ribosomal RN 98.6 2.5E-07 5.4E-12 83.4 9.0 61 166-226 185-245 (342)
63 COG4106 Tam Trans-aconitate me 98.6 1.1E-07 2.4E-12 79.7 6.1 58 168-225 21-78 (257)
64 COG2242 CobL Precorrin-6B meth 98.6 4.5E-07 9.7E-12 74.5 9.5 62 165-226 22-83 (187)
65 TIGR03438 probable methyltrans 98.6 2.4E-07 5.3E-12 82.0 8.6 47 177-223 63-110 (301)
66 COG4976 Predicted methyltransf 98.6 9.1E-08 2E-12 80.8 5.5 60 158-220 107-166 (287)
67 COG2263 Predicted RNA methylas 98.6 2.7E-07 5.9E-12 75.8 8.1 49 174-223 42-90 (198)
68 PRK15068 tRNA mo(5)U34 methylt 98.6 2.3E-07 5.1E-12 82.9 8.4 52 167-219 112-163 (322)
69 PRK00216 ubiE ubiquinone/menaq 98.5 1.6E-07 3.5E-12 79.1 6.7 54 170-223 44-98 (239)
70 TIGR00406 prmA ribosomal prote 98.5 2.5E-07 5.5E-12 81.4 8.1 48 177-225 159-206 (288)
71 COG2890 HemK Methylase of poly 98.5 2.7E-07 5.8E-12 81.0 7.8 47 180-226 113-159 (280)
72 PRK04266 fibrillarin; Provisio 98.5 4.8E-07 1E-11 77.1 9.0 53 172-224 67-119 (226)
73 TIGR03533 L3_gln_methyl protei 98.5 4.1E-07 9E-12 79.9 8.7 50 177-226 121-170 (284)
74 PRK14896 ksgA 16S ribosomal RN 98.5 4.5E-07 9.7E-12 78.6 8.7 56 166-223 18-73 (258)
75 PRK14966 unknown domain/N5-glu 98.5 3.5E-07 7.5E-12 84.1 8.3 49 177-225 251-299 (423)
76 PF08242 Methyltransf_12: Meth 98.5 5.1E-09 1.1E-13 77.0 -3.1 45 182-226 1-45 (99)
77 PRK11705 cyclopropane fatty ac 98.5 4.1E-07 8.9E-12 83.2 8.4 55 166-222 156-211 (383)
78 PRK04148 hypothetical protein; 98.5 5.6E-07 1.2E-11 70.5 7.8 53 167-221 6-59 (134)
79 PF13489 Methyltransf_23: Meth 98.5 4.7E-07 1E-11 71.4 7.4 40 175-216 20-59 (161)
80 PRK14121 tRNA (guanine-N(7)-)- 98.5 5.1E-07 1.1E-11 82.4 8.3 59 168-226 113-171 (390)
81 KOG1271 Methyltransferases [Ge 98.5 2.4E-07 5.2E-12 75.8 5.5 50 179-228 69-118 (227)
82 TIGR00536 hemK_fam HemK family 98.5 6.5E-07 1.4E-11 78.6 8.5 48 179-226 116-163 (284)
83 TIGR00755 ksgA dimethyladenosi 98.5 8E-07 1.7E-11 76.7 8.8 56 166-223 18-73 (253)
84 PRK14967 putative methyltransf 98.5 4.4E-07 9.5E-12 76.8 7.0 50 175-225 34-83 (223)
85 PRK13943 protein-L-isoaspartat 98.4 8.7E-07 1.9E-11 79.3 9.0 59 168-226 71-130 (322)
86 TIGR00479 rumA 23S rRNA (uraci 98.4 3.9E-07 8.4E-12 84.5 6.9 59 166-226 281-339 (431)
87 PF01135 PCMT: Protein-L-isoas 98.4 5.8E-07 1.3E-11 75.7 7.2 61 167-227 62-123 (209)
88 TIGR03534 RF_mod_PrmC protein- 98.4 9E-07 2E-11 75.4 8.5 59 167-226 78-136 (251)
89 PF13659 Methyltransf_26: Meth 98.4 6.3E-07 1.4E-11 67.4 6.6 48 178-226 1-48 (117)
90 PTZ00338 dimethyladenosine tra 98.4 1.2E-06 2.6E-11 77.5 9.0 58 166-225 25-82 (294)
91 TIGR02085 meth_trns_rumB 23S r 98.4 4.6E-07 9.9E-12 82.6 6.5 58 167-226 223-280 (374)
92 PHA03411 putative methyltransf 98.4 6.2E-07 1.3E-11 78.2 6.9 64 157-222 46-109 (279)
93 TIGR03704 PrmC_rel_meth putati 98.4 1.2E-06 2.6E-11 75.7 8.6 48 178-225 87-134 (251)
94 PRK11805 N5-glutamine S-adenos 98.4 1.1E-06 2.3E-11 78.2 8.4 49 178-226 134-182 (307)
95 PRK08317 hypothetical protein; 98.4 1.4E-06 3E-11 73.1 8.6 53 168-220 10-63 (241)
96 PRK11873 arsM arsenite S-adeno 98.4 9.4E-07 2E-11 76.7 7.8 52 175-226 75-127 (272)
97 PRK09328 N5-glutamine S-adenos 98.4 1.4E-06 3.1E-11 75.4 8.6 54 169-222 100-153 (275)
98 PRK06922 hypothetical protein; 98.4 1E-06 2.3E-11 84.7 8.2 48 177-224 418-465 (677)
99 PF05724 TPMT: Thiopurine S-me 98.4 1.3E-06 2.8E-11 74.0 7.9 75 146-222 6-80 (218)
100 PF05401 NodS: Nodulation prot 98.4 4.6E-07 1E-11 75.1 4.8 54 171-226 37-90 (201)
101 TIGR02072 BioC biotin biosynth 98.4 1.2E-06 2.5E-11 73.6 7.5 46 177-222 34-79 (240)
102 PLN02336 phosphoethanolamine N 98.4 1.4E-06 3E-11 81.6 8.6 58 165-223 254-311 (475)
103 COG2813 RsmC 16S RNA G1207 met 98.4 1.7E-06 3.8E-11 76.0 8.6 65 163-227 144-208 (300)
104 PF08003 Methyltransf_9: Prote 98.3 7.4E-07 1.6E-11 78.4 5.9 49 167-216 105-153 (315)
105 COG2265 TrmA SAM-dependent met 98.3 5.5E-07 1.2E-11 83.5 5.3 67 163-231 279-345 (432)
106 PRK10909 rsmD 16S rRNA m(2)G96 98.3 2.5E-06 5.4E-11 71.3 8.4 50 176-226 52-101 (199)
107 PLN02336 phosphoethanolamine N 98.3 1.5E-06 3.2E-11 81.4 7.8 53 167-221 27-79 (475)
108 TIGR02081 metW methionine bios 98.3 1.6E-06 3.5E-11 71.7 7.1 52 166-220 4-55 (194)
109 TIGR02143 trmA_only tRNA (urac 98.3 1.3E-06 2.8E-11 79.1 7.0 58 166-226 187-244 (353)
110 PF07021 MetW: Methionine bios 98.3 1.5E-06 3.4E-11 71.7 6.8 52 166-220 4-55 (193)
111 COG2518 Pcm Protein-L-isoaspar 98.3 2.7E-06 5.8E-11 71.3 8.1 61 166-228 61-121 (209)
112 COG4123 Predicted O-methyltran 98.3 1.8E-06 4E-11 74.2 7.2 57 169-225 36-92 (248)
113 PRK13256 thiopurine S-methyltr 98.3 2.7E-06 5.8E-11 72.4 8.1 47 173-221 39-85 (226)
114 PLN02490 MPBQ/MSBQ methyltrans 98.3 2.6E-06 5.7E-11 76.7 8.4 46 177-222 113-158 (340)
115 TIGR01177 conserved hypothetic 98.3 2.6E-06 5.7E-11 76.3 8.4 57 168-226 173-229 (329)
116 PF05958 tRNA_U5-meth_tr: tRNA 98.3 8.5E-07 1.8E-11 80.3 5.0 65 164-231 184-248 (352)
117 PRK01544 bifunctional N5-gluta 98.3 3.2E-06 7E-11 80.0 8.8 48 178-225 139-186 (506)
118 PRK05134 bifunctional 3-demeth 98.3 3.7E-06 8E-11 71.2 8.3 57 167-225 38-94 (233)
119 PHA03412 putative methyltransf 98.2 2.8E-06 6E-11 72.7 6.8 64 157-222 31-97 (241)
120 PRK05031 tRNA (uracil-5-)-meth 98.2 2.2E-06 4.8E-11 77.8 6.6 58 166-226 196-253 (362)
121 PRK10901 16S rRNA methyltransf 98.2 3.7E-06 8.1E-11 77.9 8.1 59 168-226 235-293 (427)
122 PRK15128 23S rRNA m(5)C1962 me 98.2 5E-06 1.1E-10 76.4 8.6 49 177-226 220-268 (396)
123 TIGR02716 C20_methyl_CrtF C-20 98.2 5.7E-06 1.2E-10 73.2 8.3 59 167-226 139-197 (306)
124 PRK11727 23S rRNA mA1618 methy 98.2 4.4E-06 9.6E-11 74.6 7.4 48 177-224 114-161 (321)
125 TIGR01983 UbiG ubiquinone bios 98.2 6.8E-06 1.5E-10 68.9 8.1 48 177-226 45-92 (224)
126 PRK11188 rrmJ 23S rRNA methylt 98.2 4.6E-06 1E-10 70.1 6.8 36 176-211 50-86 (209)
127 TIGR00446 nop2p NOL1/NOP2/sun 98.2 6.7E-06 1.5E-10 71.5 7.9 56 172-227 66-122 (264)
128 TIGR00478 tly hemolysin TlyA f 98.2 7.2E-06 1.6E-10 70.0 7.7 40 176-216 74-113 (228)
129 PRK11783 rlmL 23S rRNA m(2)G24 98.2 5.5E-06 1.2E-10 81.3 7.9 49 177-226 538-586 (702)
130 PLN02672 methionine S-methyltr 98.2 5.1E-06 1.1E-10 84.3 7.7 48 178-225 119-166 (1082)
131 TIGR00563 rsmB ribosomal RNA s 98.1 7.5E-06 1.6E-10 75.9 7.9 60 167-226 228-287 (426)
132 TIGR00095 RNA methyltransferas 98.1 1.2E-05 2.6E-10 66.6 8.2 49 177-226 49-97 (189)
133 KOG3010 Methyltransferase [Gen 98.1 6.2E-06 1.3E-10 70.2 6.4 42 179-222 35-76 (261)
134 KOG2904 Predicted methyltransf 98.1 7.2E-06 1.6E-10 71.1 6.8 62 166-227 134-198 (328)
135 smart00138 MeTrc Methyltransfe 98.1 7.8E-06 1.7E-10 71.2 6.9 45 177-221 99-152 (264)
136 PRK14904 16S rRNA methyltransf 98.1 1.1E-05 2.4E-10 75.2 8.1 58 169-226 242-300 (445)
137 PRK14902 16S rRNA methyltransf 98.1 1E-05 2.2E-10 75.4 7.8 59 168-226 241-300 (444)
138 PRK00050 16S rRNA m(4)C1402 me 98.1 1.2E-05 2.6E-10 71.1 7.8 57 167-223 9-66 (296)
139 PRK11827 hypothetical protein; 98.1 2.2E-06 4.7E-11 57.6 2.4 45 67-120 4-48 (60)
140 PRK14903 16S rRNA methyltransf 98.1 1.2E-05 2.5E-10 74.8 8.1 59 168-226 228-287 (431)
141 COG2835 Uncharacterized conser 98.1 2.5E-06 5.5E-11 56.9 2.5 45 67-120 4-48 (60)
142 PRK14901 16S rRNA methyltransf 98.1 1.2E-05 2.5E-10 74.8 7.9 60 167-226 242-302 (434)
143 PRK04457 spermidine synthase; 98.1 1.5E-05 3.3E-10 69.3 8.0 48 177-224 66-113 (262)
144 PLN03075 nicotianamine synthas 98.0 2.3E-05 5.1E-10 69.1 8.9 47 177-223 123-171 (296)
145 PF02390 Methyltransf_4: Putat 98.0 1.1E-05 2.4E-10 67.2 6.5 51 178-228 18-68 (195)
146 PTZ00146 fibrillarin; Provisio 98.0 1.4E-05 3E-10 70.4 7.4 49 173-221 128-177 (293)
147 KOG2187 tRNA uracil-5-methyltr 98.0 5.3E-06 1.1E-10 77.3 4.5 67 163-231 369-435 (534)
148 PLN02781 Probable caffeoyl-CoA 98.0 2.5E-05 5.4E-10 66.8 8.1 53 175-227 66-119 (234)
149 TIGR01444 fkbM_fam methyltrans 98.0 1.7E-05 3.8E-10 61.8 6.3 47 180-226 1-47 (143)
150 TIGR00438 rrmJ cell division p 97.9 2.8E-05 6.1E-10 63.9 6.9 39 175-213 30-69 (188)
151 KOG1499 Protein arginine N-met 97.9 2.9E-05 6.4E-10 69.3 7.4 49 176-226 59-107 (346)
152 COG0030 KsgA Dimethyladenosine 97.9 5.8E-05 1.2E-09 65.4 8.4 60 165-226 18-77 (259)
153 PF13679 Methyltransf_32: Meth 97.9 4.7E-05 1E-09 59.9 7.3 49 176-225 24-77 (141)
154 KOG3420 Predicted RNA methylas 97.9 1.8E-05 3.8E-10 62.7 4.1 53 172-225 43-95 (185)
155 COG2519 GCD14 tRNA(1-methylade 97.8 6.8E-05 1.5E-09 64.4 7.8 63 166-228 83-146 (256)
156 PF08704 GCD14: tRNA methyltra 97.8 0.00011 2.5E-09 63.3 9.2 62 166-227 29-91 (247)
157 PRK00811 spermidine synthase; 97.8 5.5E-05 1.2E-09 66.5 7.4 47 177-223 76-122 (283)
158 cd02440 AdoMet_MTases S-adenos 97.8 6.3E-05 1.4E-09 53.3 6.0 41 180-221 1-41 (107)
159 COG0220 Predicted S-adenosylme 97.8 9.3E-05 2E-09 63.1 7.3 55 172-226 43-97 (227)
160 PF03291 Pox_MCEL: mRNA cappin 97.8 5.6E-05 1.2E-09 68.0 6.2 45 177-222 62-106 (331)
161 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00023 5E-09 62.9 9.0 83 141-223 5-99 (311)
162 PLN02476 O-methyltransferase 97.7 0.00023 5E-09 62.4 8.7 54 174-227 115-169 (278)
163 TIGR00417 speE spermidine synt 97.6 0.00019 4.1E-09 62.5 7.6 48 177-224 72-119 (270)
164 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00011 2.4E-09 67.2 6.3 49 178-226 58-106 (382)
165 PF03966 Trm112p: Trm112p-like 97.6 2.7E-05 5.8E-10 53.9 1.6 47 67-113 3-68 (68)
166 KOG4300 Predicted methyltransf 97.6 8.3E-05 1.8E-09 62.2 4.7 57 169-226 68-124 (252)
167 PF01170 UPF0020: Putative RNA 97.6 0.00024 5.1E-09 58.3 7.0 60 167-226 18-86 (179)
168 KOG2899 Predicted methyltransf 97.6 0.00013 2.9E-09 62.3 5.5 48 176-223 57-104 (288)
169 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00028 6E-09 61.2 7.4 59 166-226 19-77 (262)
170 PF02475 Met_10: Met-10+ like- 97.5 0.0003 6.5E-09 58.9 7.1 50 177-226 101-150 (200)
171 PF03602 Cons_hypoth95: Conser 97.5 0.00025 5.5E-09 58.5 6.5 50 176-226 41-90 (183)
172 PF01596 Methyltransf_3: O-met 97.5 0.00032 6.9E-09 58.9 7.0 50 177-226 45-95 (205)
173 COG4122 Predicted O-methyltran 97.5 0.00048 1E-08 58.3 8.0 56 173-228 55-111 (219)
174 PF10294 Methyltransf_16: Puta 97.5 0.00047 1E-08 56.2 7.5 50 175-225 43-92 (173)
175 KOG1500 Protein arginine N-met 97.5 0.00037 8E-09 62.3 7.1 52 174-228 174-225 (517)
176 PLN02366 spermidine synthase 97.5 0.00034 7.4E-09 62.3 6.9 47 177-223 91-137 (308)
177 KOG0820 Ribosomal RNA adenine 97.4 0.00067 1.5E-08 59.0 8.2 57 167-225 48-104 (315)
178 PRK01581 speE spermidine synth 97.4 0.00029 6.2E-09 64.0 6.1 43 177-219 150-192 (374)
179 KOG3191 Predicted N6-DNA-methy 97.4 0.00069 1.5E-08 55.7 7.6 53 173-225 39-92 (209)
180 PF10672 Methyltrans_SAM: S-ad 97.3 0.00096 2.1E-08 58.8 8.2 50 177-227 123-172 (286)
181 COG1092 Predicted SAM-dependen 97.3 0.00076 1.7E-08 61.9 7.5 69 157-228 199-267 (393)
182 TIGR02987 met_A_Alw26 type II 97.3 0.00054 1.2E-08 65.2 6.7 69 157-225 4-87 (524)
183 PF09243 Rsm22: Mitochondrial 97.3 0.0011 2.4E-08 58.0 8.1 60 167-226 23-83 (274)
184 PRK01544 bifunctional N5-gluta 97.3 0.00062 1.3E-08 64.6 6.7 50 177-226 347-396 (506)
185 PRK03612 spermidine synthase; 97.2 0.00061 1.3E-08 64.9 6.4 44 177-220 297-340 (521)
186 KOG1975 mRNA cap methyltransfe 97.2 0.00032 6.9E-09 62.3 3.7 47 177-224 117-163 (389)
187 COG1041 Predicted DNA modifica 97.2 0.00067 1.5E-08 60.9 5.7 55 169-225 189-243 (347)
188 PLN02589 caffeoyl-CoA O-methyl 97.1 0.0024 5.2E-08 55.2 7.8 54 174-227 76-130 (247)
189 PF05185 PRMT5: PRMT5 arginine 97.1 0.0047 1E-07 57.8 10.1 48 178-225 187-238 (448)
190 TIGR03439 methyl_EasF probable 97.1 0.0031 6.7E-08 56.4 8.6 45 178-222 77-125 (319)
191 PF08123 DOT1: Histone methyla 97.0 0.0026 5.5E-08 53.5 7.5 53 168-221 33-86 (205)
192 COG0742 N6-adenine-specific me 97.0 0.0041 9E-08 51.4 8.4 60 165-225 29-90 (187)
193 TIGR00006 S-adenosyl-methyltra 97.0 0.0042 9.2E-08 55.2 8.8 59 166-224 9-67 (305)
194 COG3963 Phospholipid N-methylt 96.9 0.0056 1.2E-07 49.8 7.7 68 163-230 34-102 (194)
195 COG2520 Predicted methyltransf 96.7 0.0056 1.2E-07 55.2 7.3 56 168-226 181-236 (341)
196 KOG1661 Protein-L-isoaspartate 96.7 0.0033 7.1E-08 52.8 5.4 50 176-225 81-132 (237)
197 PHA01634 hypothetical protein 96.7 0.0074 1.6E-07 46.9 6.7 51 177-228 28-78 (156)
198 PRK11760 putative 23S rRNA C24 96.6 0.0046 9.9E-08 55.7 6.1 34 176-211 210-243 (357)
199 PRK11524 putative methyltransf 96.6 0.0085 1.9E-07 52.6 7.8 58 163-223 195-252 (284)
200 PF05219 DREV: DREV methyltran 96.6 0.0042 9.2E-08 53.8 5.6 42 177-220 94-135 (265)
201 KOG2361 Predicted methyltransf 96.6 0.0024 5.1E-08 54.7 3.8 45 179-223 73-119 (264)
202 PF07091 FmrO: Ribosomal RNA m 96.6 0.0046 1E-07 53.3 5.6 58 166-225 96-153 (251)
203 PF01555 N6_N4_Mtase: DNA meth 96.6 0.0084 1.8E-07 49.6 7.1 55 162-219 177-231 (231)
204 PF05971 Methyltransf_10: Prot 96.6 0.0063 1.4E-07 53.9 6.5 48 178-227 103-152 (299)
205 PF07757 AdoMet_MTase: Predict 96.5 0.0062 1.4E-07 45.8 5.2 34 176-211 57-90 (112)
206 PRK13699 putative methylase; P 96.5 0.014 3.1E-07 49.6 8.0 59 162-223 149-207 (227)
207 PF00891 Methyltransf_2: O-met 96.5 0.0082 1.8E-07 51.1 6.5 51 168-219 91-141 (241)
208 PF06080 DUF938: Protein of un 96.4 0.011 2.4E-07 49.5 6.9 61 165-226 14-74 (204)
209 PRK11933 yebU rRNA (cytosine-C 96.4 0.015 3.3E-07 54.7 8.5 55 174-228 110-165 (470)
210 PLN02823 spermine synthase 96.4 0.013 2.9E-07 52.8 7.7 47 177-223 103-149 (336)
211 TIGR00308 TRM1 tRNA(guanine-26 96.4 0.011 2.4E-07 54.0 7.2 48 178-226 45-94 (374)
212 KOG2730 Methylase [General fun 96.4 0.011 2.3E-07 50.2 6.4 66 160-227 76-142 (263)
213 KOG2915 tRNA(1-methyladenosine 96.4 0.018 3.8E-07 50.3 7.8 62 166-227 94-156 (314)
214 PF01739 CheR: CheR methyltran 96.3 0.0079 1.7E-07 50.2 5.6 44 177-220 31-83 (196)
215 PF01728 FtsJ: FtsJ-like methy 96.3 0.0036 7.7E-08 50.9 3.4 36 177-212 23-59 (181)
216 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.016 3.6E-07 57.1 8.5 50 177-226 190-281 (702)
217 COG0500 SmtA SAM-dependent met 96.1 0.0096 2.1E-07 43.9 4.6 41 181-222 52-93 (257)
218 COG0116 Predicted N6-adenine-s 95.9 0.025 5.4E-07 51.7 6.8 63 166-228 180-281 (381)
219 PF02527 GidB: rRNA small subu 95.9 0.047 1E-06 45.1 7.9 48 180-227 51-98 (184)
220 PF12147 Methyltransf_20: Puta 95.8 0.046 1E-06 48.2 8.1 55 175-229 133-189 (311)
221 COG2384 Predicted SAM-dependen 95.8 0.027 5.9E-07 47.6 6.4 60 166-227 7-66 (226)
222 PRK10611 chemotaxis methyltran 95.8 0.035 7.5E-07 49.1 7.2 63 158-220 95-166 (287)
223 PF11599 AviRa: RRNA methyltra 95.6 0.032 6.9E-07 47.2 6.0 54 170-223 44-99 (246)
224 PF01795 Methyltransf_5: MraW 95.5 0.026 5.7E-07 50.3 5.5 58 167-224 10-67 (310)
225 COG4076 Predicted RNA methylas 95.5 0.026 5.7E-07 46.8 5.0 48 178-227 33-80 (252)
226 KOG3115 Methyltransferase-like 95.5 0.017 3.8E-07 48.4 3.9 49 177-225 60-108 (249)
227 PRK00420 hypothetical protein; 95.5 0.011 2.3E-07 44.9 2.4 33 71-113 23-55 (112)
228 COG0357 GidB Predicted S-adeno 95.4 0.082 1.8E-06 44.7 7.9 51 178-228 68-118 (215)
229 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.4 0.084 1.8E-06 46.4 8.3 59 170-228 78-137 (283)
230 COG0293 FtsJ 23S rRNA methylas 95.3 0.058 1.3E-06 45.3 6.5 36 176-211 44-80 (205)
231 COG1189 Predicted rRNA methyla 95.3 0.036 7.7E-07 47.5 5.2 40 176-216 78-117 (245)
232 COG3897 Predicted methyltransf 95.2 0.021 4.5E-07 47.6 3.4 56 169-225 71-126 (218)
233 COG0421 SpeE Spermidine syntha 95.2 0.085 1.8E-06 46.5 7.5 48 178-225 77-124 (282)
234 KOG1501 Arginine N-methyltrans 95.2 0.036 7.9E-07 51.4 5.3 49 179-228 68-116 (636)
235 COG0286 HsdM Type I restrictio 95.1 0.13 2.9E-06 48.6 9.1 87 140-226 144-239 (489)
236 PRK10742 putative methyltransf 94.9 0.1 2.2E-06 45.1 7.1 55 168-224 77-133 (250)
237 PF01564 Spermine_synth: Sperm 94.9 0.061 1.3E-06 46.3 5.7 48 177-224 76-123 (246)
238 KOG4589 Cell division protein 94.8 0.047 1E-06 45.3 4.6 35 176-210 68-103 (232)
239 KOG3987 Uncharacterized conser 94.7 0.011 2.3E-07 49.9 0.6 43 176-220 111-153 (288)
240 COG1352 CheR Methylase of chem 94.5 0.14 2.9E-06 44.9 7.0 42 178-219 97-147 (268)
241 KOG4058 Uncharacterized conser 94.4 0.094 2E-06 42.0 5.2 62 163-225 58-119 (199)
242 COG0144 Sun tRNA and rRNA cyto 94.4 0.18 3.8E-06 45.9 7.7 60 169-228 148-209 (355)
243 PRK00536 speE spermidine synth 94.4 0.1 2.3E-06 45.4 5.9 46 176-223 71-116 (262)
244 PF13719 zinc_ribbon_5: zinc-r 94.3 0.025 5.4E-07 34.2 1.4 35 71-109 2-36 (37)
245 PF05891 Methyltransf_PK: AdoM 94.3 0.066 1.4E-06 45.3 4.3 46 177-223 55-100 (218)
246 PF14446 Prok-RING_1: Prokaryo 94.0 0.039 8.4E-07 36.3 2.0 28 72-110 6-33 (54)
247 COG0275 Predicted S-adenosylme 94.0 0.36 7.7E-06 42.9 8.6 60 166-225 12-72 (314)
248 PF07942 N2227: N2227-like pro 93.8 0.22 4.9E-06 43.6 7.0 42 177-220 56-97 (270)
249 PF03141 Methyltransf_29: Puta 93.8 0.09 2E-06 49.5 4.7 53 166-220 102-161 (506)
250 PF14803 Nudix_N_2: Nudix N-te 93.6 0.041 8.9E-07 32.7 1.4 30 73-107 2-31 (34)
251 KOG1663 O-methyltransferase [S 93.5 0.31 6.7E-06 41.6 7.0 55 174-228 70-125 (237)
252 PF08271 TF_Zn_Ribbon: TFIIB z 93.5 0.055 1.2E-06 33.7 1.9 29 72-108 1-29 (43)
253 PF01269 Fibrillarin: Fibrilla 93.5 0.33 7.2E-06 41.3 7.1 51 173-223 69-120 (229)
254 KOG2940 Predicted methyltransf 93.4 0.21 4.5E-06 42.9 5.8 42 178-220 73-114 (325)
255 PF05148 Methyltransf_8: Hypot 93.4 0.23 4.9E-06 41.9 6.0 65 138-209 36-101 (219)
256 PF09297 zf-NADH-PPase: NADH p 93.4 0.046 1E-06 31.9 1.3 28 72-108 4-31 (32)
257 TIGR01206 lysW lysine biosynth 93.2 0.072 1.6E-06 35.1 2.2 32 72-110 3-34 (54)
258 PF08792 A2L_zn_ribbon: A2L zi 93.0 0.094 2E-06 31.0 2.3 31 70-109 2-32 (33)
259 COG1645 Uncharacterized Zn-fin 92.9 0.066 1.4E-06 41.6 2.0 28 69-107 26-53 (131)
260 PF09862 DUF2089: Protein of u 92.7 0.069 1.5E-06 40.6 1.8 22 74-108 1-22 (113)
261 KOG2651 rRNA adenine N-6-methy 92.4 0.41 9E-06 43.8 6.6 44 176-220 152-195 (476)
262 PF13717 zinc_ribbon_4: zinc-r 92.0 0.092 2E-06 31.6 1.4 34 71-108 2-35 (36)
263 PRK00398 rpoP DNA-directed RNA 91.7 0.17 3.7E-06 31.9 2.5 32 70-110 2-33 (46)
264 smart00661 RPOL9 RNA polymeras 91.6 0.21 4.5E-06 32.1 2.8 34 73-113 2-35 (52)
265 TIGR02098 MJ0042_CXXC MJ0042 f 91.5 0.1 2.2E-06 31.4 1.2 34 72-109 3-36 (38)
266 PF08274 PhnA_Zn_Ribbon: PhnA 91.4 0.11 2.3E-06 30.0 1.1 26 73-108 4-29 (30)
267 PF07191 zinc-ribbons_6: zinc- 91.3 0.11 2.3E-06 36.0 1.3 28 72-110 2-29 (70)
268 COG1656 Uncharacterized conser 91.2 0.1 2.2E-06 42.2 1.2 40 69-108 95-140 (165)
269 COG1997 RPL43A Ribosomal prote 91.1 0.18 3.8E-06 36.4 2.2 32 70-110 34-65 (89)
270 PF14353 CpXC: CpXC protein 91.1 0.12 2.6E-06 39.8 1.5 41 72-112 2-52 (128)
271 KOG1088 Uncharacterized conser 91.0 0.13 2.9E-06 39.0 1.6 26 94-119 94-119 (124)
272 PRK00432 30S ribosomal protein 90.9 0.19 4.1E-06 32.5 2.1 29 70-108 19-47 (50)
273 PF02150 RNA_POL_M_15KD: RNA p 90.8 0.13 2.8E-06 30.7 1.1 32 72-111 2-33 (35)
274 PF10571 UPF0547: Uncharacteri 90.8 0.16 3.5E-06 28.3 1.5 24 73-109 2-25 (26)
275 KOG1227 Putative methyltransfe 90.8 0.29 6.2E-06 43.5 3.7 47 178-225 195-242 (351)
276 PF02636 Methyltransf_28: Puta 90.7 0.35 7.5E-06 41.6 4.2 47 178-224 19-73 (252)
277 smart00440 ZnF_C2C2 C2C2 Zinc 90.5 0.18 3.9E-06 31.0 1.7 38 72-109 1-39 (40)
278 COG1889 NOP1 Fibrillarin-like 90.1 0.91 2E-05 38.2 5.9 54 173-226 72-125 (231)
279 COG3809 Uncharacterized protei 90.0 0.18 4E-06 35.6 1.5 35 71-112 1-35 (88)
280 PF01096 TFIIS_C: Transcriptio 89.8 0.11 2.5E-06 31.7 0.3 37 72-108 1-38 (39)
281 PF11781 RRN7: RNA polymerase 89.7 0.2 4.4E-06 30.1 1.4 27 71-107 8-34 (36)
282 PF06677 Auto_anti-p27: Sjogre 89.5 0.28 6.1E-06 30.4 1.9 27 69-105 15-41 (41)
283 COG3129 Predicted SAM-dependen 89.5 0.53 1.2E-05 40.4 4.2 49 177-227 78-128 (292)
284 KOG1331 Predicted methyltransf 89.4 0.28 6.1E-06 43.1 2.6 40 178-221 46-85 (293)
285 PRK09678 DNA-binding transcrip 89.4 0.19 4E-06 35.2 1.2 46 72-118 2-49 (72)
286 KOG1269 SAM-dependent methyltr 88.6 0.55 1.2E-05 42.9 4.0 49 176-225 109-157 (364)
287 PF01927 Mut7-C: Mut7-C RNAse 88.6 0.3 6.4E-06 38.7 2.0 40 70-109 90-135 (147)
288 COG0863 DNA modification methy 88.2 2.4 5.2E-05 36.7 7.7 49 175-225 220-268 (302)
289 PRK00464 nrdR transcriptional 88.2 0.35 7.5E-06 38.8 2.2 38 72-110 1-40 (154)
290 PRK10220 hypothetical protein; 88.1 0.53 1.1E-05 35.4 2.9 33 70-112 2-34 (111)
291 PHA00626 hypothetical protein 87.7 0.51 1.1E-05 31.1 2.3 34 72-110 1-35 (59)
292 PF03119 DNA_ligase_ZBD: NAD-d 87.6 0.3 6.6E-06 27.6 1.1 13 73-85 1-13 (28)
293 TIGR00686 phnA alkylphosphonat 87.3 0.47 1E-05 35.6 2.2 32 71-112 2-33 (109)
294 COG1326 Uncharacterized archae 87.2 0.31 6.7E-06 40.3 1.3 38 70-110 5-42 (201)
295 KOG0024 Sorbitol dehydrogenase 87.2 1.3 2.8E-05 39.8 5.3 47 175-223 167-215 (354)
296 PF13240 zinc_ribbon_2: zinc-r 87.2 0.33 7.1E-06 26.2 1.0 22 73-107 1-22 (23)
297 KOG2078 tRNA modification enzy 87.2 0.55 1.2E-05 43.6 3.1 56 167-226 241-296 (495)
298 smart00531 TFIIE Transcription 86.9 0.33 7.2E-06 38.5 1.3 41 65-108 93-133 (147)
299 KOG1098 Putative SAM-dependent 86.7 1.7 3.6E-05 42.3 6.1 36 176-211 43-79 (780)
300 COG1064 AdhP Zn-dependent alco 86.6 2.2 4.7E-05 38.6 6.5 48 174-223 163-212 (339)
301 KOG2906 RNA polymerase III sub 86.6 0.42 9.1E-06 35.2 1.6 39 71-116 1-39 (105)
302 KOG3178 Hydroxyindole-O-methyl 86.5 1.3 2.9E-05 39.9 5.1 43 178-222 178-220 (342)
303 KOG3045 Predicted RNA methylas 86.5 1.4 2.9E-05 38.6 4.9 58 132-193 137-196 (325)
304 COG1063 Tdh Threonine dehydrog 86.3 2.1 4.6E-05 38.6 6.4 49 176-224 167-216 (350)
305 COG2521 Predicted archaeal met 86.2 0.81 1.8E-05 39.4 3.4 48 172-220 129-176 (287)
306 COG1565 Uncharacterized conser 85.6 6.8 0.00015 35.8 9.1 53 173-225 73-133 (370)
307 smart00834 CxxC_CXXC_SSSS Puta 85.4 0.52 1.1E-05 28.5 1.4 30 71-106 5-34 (41)
308 PRK06266 transcription initiat 85.2 0.33 7.2E-06 39.8 0.6 36 64-107 110-145 (178)
309 cd08283 FDH_like_1 Glutathione 84.8 3 6.6E-05 37.7 6.8 47 174-220 181-228 (386)
310 KOG2920 Predicted methyltransf 84.6 0.83 1.8E-05 40.1 2.8 37 177-214 116-152 (282)
311 TIGR00373 conserved hypothetic 84.4 0.33 7.2E-06 39.0 0.2 35 65-107 103-137 (158)
312 PF11899 DUF3419: Protein of u 84.4 4.1 8.9E-05 37.5 7.4 53 169-223 27-79 (380)
313 PF04672 Methyltransf_19: S-ad 84.4 3.2 6.9E-05 36.3 6.3 50 177-226 68-120 (267)
314 COG1571 Predicted DNA-binding 84.3 0.61 1.3E-05 43.2 1.9 37 67-113 346-382 (421)
315 PF09538 FYDLN_acid: Protein o 83.9 0.73 1.6E-05 34.8 1.9 30 72-111 10-39 (108)
316 PF14205 Cys_rich_KTR: Cystein 83.7 0.74 1.6E-05 30.2 1.6 36 71-111 4-41 (55)
317 PF13453 zf-TFIIB: Transcripti 83.7 0.68 1.5E-05 28.4 1.4 33 73-112 1-33 (41)
318 smart00659 RPOLCX RNA polymera 83.6 0.96 2.1E-05 28.4 2.0 30 71-110 2-31 (44)
319 PRK03564 formate dehydrogenase 83.6 0.81 1.8E-05 40.8 2.3 38 70-110 186-224 (309)
320 TIGR03655 anti_R_Lar restricti 83.3 1.2 2.6E-05 29.0 2.5 37 71-110 1-38 (53)
321 COG4262 Predicted spermidine s 83.1 3.3 7.2E-05 38.0 6.0 43 178-220 290-332 (508)
322 PF05206 TRM13: Methyltransfer 82.7 3.5 7.6E-05 35.9 5.9 36 176-211 17-57 (259)
323 PF04606 Ogr_Delta: Ogr/Delta- 82.4 0.38 8.3E-06 30.6 -0.1 39 73-112 1-41 (47)
324 PF13248 zf-ribbon_3: zinc-rib 82.4 0.7 1.5E-05 25.5 1.0 23 72-107 3-25 (26)
325 PF04445 SAM_MT: Putative SAM- 82.1 3.3 7.2E-05 35.5 5.4 39 179-219 77-115 (234)
326 TIGR01562 FdhE formate dehydro 82.0 1 2.2E-05 40.2 2.3 40 69-110 182-222 (305)
327 COG2051 RPS27A Ribosomal prote 82.0 0.98 2.1E-05 30.9 1.7 43 64-114 12-54 (67)
328 PHA02998 RNA polymerase subuni 81.6 1 2.2E-05 36.9 2.0 42 70-111 142-184 (195)
329 PF07282 OrfB_Zn_ribbon: Putat 81.5 1.1 2.5E-05 30.4 2.0 30 70-108 27-56 (69)
330 PF14354 Lar_restr_allev: Rest 81.5 1.3 2.9E-05 29.3 2.3 35 70-106 2-37 (61)
331 PF04216 FdhE: Protein involve 81.4 0.42 9E-06 42.1 -0.3 37 71-110 172-209 (290)
332 COG1779 C4-type Zn-finger prot 81.4 0.79 1.7E-05 38.1 1.3 41 69-110 12-55 (201)
333 PRK12495 hypothetical protein; 81.2 1.1 2.4E-05 37.8 2.2 33 67-110 38-70 (226)
334 KOG2907 RNA polymerase I trans 81.2 1 2.2E-05 34.0 1.7 47 63-109 66-113 (116)
335 TIGR01384 TFS_arch transcripti 80.7 1.3 2.8E-05 32.8 2.2 27 73-110 2-28 (104)
336 PF01780 Ribosomal_L37ae: Ribo 80.5 0.79 1.7E-05 33.4 0.9 31 70-109 34-64 (90)
337 COG3877 Uncharacterized protei 80.4 1.1 2.3E-05 33.6 1.6 25 71-108 6-30 (122)
338 PRK00423 tfb transcription ini 79.4 1.5 3.2E-05 39.1 2.6 35 68-110 8-42 (310)
339 PF07754 DUF1610: Domain of un 79.1 2.1 4.6E-05 23.3 2.1 24 74-106 1-24 (24)
340 PHA02768 hypothetical protein; 78.9 0.57 1.2E-05 30.9 -0.2 45 71-116 5-49 (55)
341 PF12242 Eno-Rase_NADH_b: NAD( 78.9 9.2 0.0002 27.1 5.8 36 176-211 37-74 (78)
342 COG1096 Predicted RNA-binding 78.9 1.4 2.9E-05 36.4 1.9 27 71-108 149-175 (188)
343 TIGR02300 FYDLN_acid conserved 78.7 1.4 3.1E-05 34.1 1.9 31 71-111 9-39 (129)
344 PF01234 NNMT_PNMT_TEMT: NNMT/ 78.4 1.7 3.6E-05 37.8 2.5 48 176-225 55-103 (256)
345 COG4888 Uncharacterized Zn rib 78.3 1.2 2.6E-05 33.0 1.3 39 70-111 21-59 (104)
346 COG5379 BtaA S-adenosylmethion 78.1 6 0.00013 35.4 5.8 47 176-224 62-108 (414)
347 PRK14892 putative transcriptio 78.1 2 4.4E-05 31.8 2.5 39 67-111 17-55 (99)
348 PF03059 NAS: Nicotianamine sy 78.0 6.1 0.00013 34.7 5.9 45 178-222 121-167 (276)
349 PF04989 CmcI: Cephalosporin h 77.9 3.4 7.4E-05 34.7 4.1 36 177-212 32-71 (206)
350 KOG1122 tRNA and rRNA cytosine 77.6 5.2 0.00011 37.3 5.5 56 173-228 237-293 (460)
351 PF09986 DUF2225: Uncharacteri 77.5 1.5 3.3E-05 37.0 1.9 14 98-111 48-61 (214)
352 COG1998 RPS31 Ribosomal protei 77.3 1.7 3.8E-05 27.9 1.7 31 69-108 17-47 (51)
353 PRK10458 DNA cytosine methylas 77.2 10 0.00022 35.9 7.5 57 164-221 68-130 (467)
354 KOG2671 Putative RNA methylase 76.9 1.5 3.2E-05 39.8 1.8 52 163-216 193-245 (421)
355 PF04423 Rad50_zn_hook: Rad50 76.8 0.78 1.7E-05 29.9 -0.0 12 73-84 22-33 (54)
356 TIGR03831 YgiT_finger YgiT-typ 76.3 1.6 3.5E-05 26.8 1.3 14 98-111 32-45 (46)
357 PF12692 Methyltransf_17: S-ad 76.0 9.5 0.00021 30.6 5.9 43 167-210 19-61 (160)
358 PF09723 Zn-ribbon_8: Zinc rib 75.9 1.6 3.5E-05 26.9 1.3 31 71-107 5-35 (42)
359 TIGR01385 TFSII transcription 75.9 2 4.4E-05 38.2 2.3 42 67-108 254-296 (299)
360 smart00778 Prim_Zn_Ribbon Zinc 75.9 3.1 6.8E-05 25.1 2.4 29 71-106 3-33 (37)
361 PF12760 Zn_Tnp_IS1595: Transp 75.7 2.9 6.2E-05 26.3 2.4 27 72-106 19-45 (46)
362 PF12773 DZR: Double zinc ribb 75.6 2.2 4.7E-05 27.0 1.8 29 70-108 11-39 (50)
363 PF02086 MethyltransfD12: D12 75.1 5.9 0.00013 33.5 5.0 56 166-223 9-64 (260)
364 PRK09424 pntA NAD(P) transhydr 74.9 7.2 0.00016 37.3 5.9 43 176-220 163-207 (509)
365 COG1198 PriA Primosomal protei 74.9 9.7 0.00021 38.0 6.9 34 180-213 485-518 (730)
366 KOG2906 RNA polymerase III sub 74.8 1.1 2.5E-05 33.0 0.4 40 70-109 64-104 (105)
367 COG1594 RPB9 DNA-directed RNA 74.7 1.7 3.7E-05 33.0 1.4 39 71-109 72-111 (113)
368 PF08996 zf-DNA_Pol: DNA Polym 74.6 1.5 3.3E-05 36.2 1.1 39 70-108 17-55 (188)
369 PF05129 Elf1: Transcription e 74.6 1 2.2E-05 32.2 0.1 43 69-114 20-62 (81)
370 PRK05978 hypothetical protein; 74.6 2.2 4.8E-05 34.0 2.0 36 70-113 32-67 (148)
371 PRK00241 nudC NADH pyrophospha 74.6 2.2 4.8E-05 37.0 2.2 36 65-109 93-128 (256)
372 KOG2798 Putative trehalase [Ca 74.3 4 8.6E-05 36.7 3.7 49 166-216 135-187 (369)
373 PF08273 Prim_Zn_Ribbon: Zinc- 74.3 2.3 4.9E-05 26.2 1.6 31 72-106 4-34 (40)
374 PRK00415 rps27e 30S ribosomal 74.1 2.9 6.3E-05 28.0 2.2 40 67-114 7-46 (59)
375 PTZ00255 60S ribosomal protein 74.0 2.2 4.9E-05 31.0 1.7 33 69-110 34-66 (90)
376 KOG3201 Uncharacterized conser 73.9 2 4.3E-05 35.1 1.6 56 168-223 20-76 (201)
377 cd04476 RPA1_DBD_C RPA1_DBD_C: 73.9 2.7 5.8E-05 33.6 2.4 34 68-111 31-64 (166)
378 PRK14811 formamidopyrimidine-D 73.9 2.3 5E-05 37.1 2.2 32 72-110 236-267 (269)
379 PRK10445 endonuclease VIII; Pr 73.1 2.1 4.6E-05 37.2 1.7 29 71-106 235-263 (263)
380 TIGR01384 TFS_arch transcripti 73.0 2.3 4.9E-05 31.4 1.6 39 71-109 62-101 (104)
381 PRK03988 translation initiatio 72.4 2.7 5.8E-05 33.1 2.0 35 70-110 101-135 (138)
382 KOG2352 Predicted spermine/spe 72.2 2.6 5.5E-05 39.8 2.1 47 177-223 295-341 (482)
383 TIGR00311 aIF-2beta translatio 72.2 2.7 5.8E-05 32.9 1.9 35 70-110 96-130 (133)
384 COG4301 Uncharacterized conser 71.8 22 0.00047 31.2 7.4 48 176-223 77-128 (321)
385 TIGR00280 L37a ribosomal prote 71.6 2.4 5.3E-05 30.9 1.5 33 69-110 33-65 (91)
386 cd08254 hydroxyacyl_CoA_DH 6-h 70.6 17 0.00038 31.4 7.0 43 175-219 163-207 (338)
387 KOG2593 Transcription initiati 70.6 2.1 4.5E-05 39.7 1.1 44 65-110 122-165 (436)
388 COG1867 TRM1 N2,N2-dimethylgua 70.6 19 0.00041 33.0 7.2 47 178-224 53-99 (380)
389 COG2888 Predicted Zn-ribbon RN 70.5 2.7 5.9E-05 28.1 1.4 39 65-107 21-59 (61)
390 COG1255 Uncharacterized protei 70.3 7 0.00015 30.0 3.7 33 178-212 14-47 (129)
391 cd05188 MDR Medium chain reduc 70.2 20 0.00043 29.7 7.0 43 176-220 133-177 (271)
392 COG1594 RPB9 DNA-directed RNA 70.1 3.9 8.5E-05 31.0 2.4 36 71-113 2-37 (113)
393 TIGR00595 priA primosomal prot 70.0 4 8.6E-05 38.9 2.9 30 72-110 223-252 (505)
394 PF03604 DNA_RNApol_7kD: DNA d 69.9 2.5 5.5E-05 24.7 1.0 26 73-108 2-27 (32)
395 PRK14810 formamidopyrimidine-D 69.7 2.8 6E-05 36.7 1.7 28 71-105 244-271 (272)
396 PRK12380 hydrogenase nickel in 69.5 3.1 6.8E-05 31.5 1.7 35 63-108 62-96 (113)
397 PF02005 TRM: N2,N2-dimethylgu 69.4 11 0.00024 34.6 5.6 50 178-227 50-100 (377)
398 PRK00564 hypA hydrogenase nick 68.8 3.3 7.2E-05 31.5 1.8 38 62-109 62-99 (117)
399 PRK03976 rpl37ae 50S ribosomal 68.6 3 6.5E-05 30.4 1.4 32 70-110 35-66 (90)
400 PRK13945 formamidopyrimidine-D 68.4 3.2 7E-05 36.4 1.8 28 71-105 254-281 (282)
401 PF13578 Methyltransf_24: Meth 68.4 2.3 5E-05 30.9 0.8 31 182-212 1-34 (106)
402 COG3677 Transposase and inacti 68.2 3.6 7.7E-05 32.0 1.8 43 67-114 26-69 (129)
403 PRK01103 formamidopyrimidine/5 68.0 3.3 7E-05 36.2 1.8 28 72-106 246-273 (274)
404 TIGR00244 transcriptional regu 68.0 3.5 7.6E-05 32.8 1.8 39 73-111 2-41 (147)
405 PF03811 Zn_Tnp_IS1: InsA N-te 67.9 5.4 0.00012 23.9 2.2 30 71-105 5-36 (36)
406 COG1327 Predicted transcriptio 67.9 3.2 6.9E-05 33.1 1.5 38 73-111 2-41 (156)
407 PF03686 UPF0146: Uncharacteri 67.8 11 0.00024 29.2 4.4 33 178-212 14-47 (127)
408 TIGR00340 zpr1_rel ZPR1-relate 67.6 3.3 7.1E-05 33.5 1.6 36 74-110 1-40 (163)
409 PRK08665 ribonucleotide-diphos 67.3 3.1 6.8E-05 41.6 1.7 24 73-107 726-749 (752)
410 TIGR00100 hypA hydrogenase nic 67.3 3.7 8.1E-05 31.1 1.8 35 63-108 62-96 (115)
411 TIGR02605 CxxC_CxxC_SSSS putat 67.2 3.3 7.2E-05 26.4 1.3 31 71-107 5-35 (52)
412 PF01783 Ribosomal_L32p: Ribos 67.1 3.7 8.1E-05 27.0 1.5 26 70-110 25-50 (56)
413 TIGR00497 hsdM type I restrict 66.9 41 0.0009 31.9 9.1 65 159-223 197-267 (501)
414 COG1062 AdhC Zn-dependent alco 66.6 23 0.00049 32.3 6.8 51 169-220 177-229 (366)
415 PRK03681 hypA hydrogenase nick 66.4 4.1 8.9E-05 30.9 1.8 36 63-108 62-97 (114)
416 TIGR00577 fpg formamidopyrimid 66.0 3.7 8E-05 35.9 1.7 28 71-105 245-272 (272)
417 PRK03824 hypA hydrogenase nick 65.9 4 8.7E-05 31.9 1.8 45 64-108 63-117 (135)
418 KOG1252 Cystathionine beta-syn 65.5 11 0.00023 34.2 4.5 37 178-214 212-252 (362)
419 cd08237 ribitol-5-phosphate_DH 65.4 16 0.00034 32.5 5.7 44 176-219 162-207 (341)
420 PRK08703 short chain dehydroge 65.1 37 0.00079 28.0 7.6 45 177-223 5-52 (239)
421 COG0675 Transposase and inacti 64.9 4 8.7E-05 35.7 1.8 27 68-108 306-332 (364)
422 PF08646 Rep_fac-A_C: Replicat 64.9 4 8.8E-05 31.9 1.6 34 68-111 15-50 (146)
423 PF10058 DUF2296: Predicted in 64.7 7.3 0.00016 25.5 2.5 37 64-107 15-53 (54)
424 COG1675 TFA1 Transcription ini 64.5 2 4.4E-05 35.2 -0.2 36 64-107 106-141 (176)
425 PF10122 Mu-like_Com: Mu-like 63.8 3.6 7.7E-05 26.7 0.9 35 70-111 3-37 (51)
426 cd00350 rubredoxin_like Rubred 63.8 4.6 9.9E-05 23.5 1.3 25 72-107 2-26 (33)
427 TIGR02159 PA_CoA_Oxy4 phenylac 63.6 2.2 4.7E-05 33.9 -0.2 36 71-108 105-140 (146)
428 PRK05867 short chain dehydroge 63.4 27 0.00058 29.2 6.5 45 177-223 8-55 (253)
429 PLN02668 indole-3-acetate carb 63.4 5.9 0.00013 36.5 2.6 18 178-195 64-81 (386)
430 PF01873 eIF-5_eIF-2B: Domain 63.4 5.4 0.00012 30.9 2.0 32 70-107 92-123 (125)
431 PRK07035 short chain dehydroge 63.0 29 0.00063 28.8 6.7 45 177-223 7-54 (252)
432 PRK12829 short chain dehydroge 63.0 33 0.00071 28.6 7.0 44 176-221 9-55 (264)
433 COG1592 Rubrerythrin [Energy p 63.0 4.9 0.00011 32.6 1.8 25 71-107 134-158 (166)
434 COG0777 AccD Acetyl-CoA carbox 62.9 2.9 6.3E-05 36.6 0.5 33 70-110 27-59 (294)
435 PF01396 zf-C4_Topoisom: Topoi 62.2 8.3 0.00018 23.4 2.3 30 73-109 3-35 (39)
436 COG2816 NPY1 NTP pyrophosphohy 62.2 5.8 0.00012 34.9 2.2 39 67-114 107-146 (279)
437 TIGR03830 CxxCG_CxxCG_HTH puta 61.7 4.4 9.5E-05 30.6 1.3 16 97-112 30-45 (127)
438 TIGR03201 dearomat_had 6-hydro 61.7 29 0.00062 30.8 6.7 44 174-219 163-208 (349)
439 PRK12366 replication factor A; 61.1 5 0.00011 39.4 1.8 29 68-107 529-557 (637)
440 COG4306 Uncharacterized protei 61.1 5.4 0.00012 30.9 1.6 44 69-112 37-82 (160)
441 TIGR00515 accD acetyl-CoA carb 61.0 2.7 5.9E-05 37.1 -0.0 32 71-110 26-57 (285)
442 PF14206 Cys_rich_CPCC: Cystei 60.9 7.5 0.00016 27.5 2.2 28 72-108 2-30 (78)
443 PRK06124 gluconate 5-dehydroge 60.9 36 0.00077 28.3 6.9 45 177-223 10-57 (256)
444 KOG0022 Alcohol dehydrogenase, 60.6 27 0.00058 31.6 6.1 45 175-220 190-236 (375)
445 COG3058 FdhE Uncharacterized p 60.4 3.6 7.9E-05 36.1 0.6 11 69-79 183-193 (308)
446 PRK05580 primosome assembly pr 60.3 7.7 0.00017 38.4 3.0 29 72-109 391-419 (679)
447 PF13005 zf-IS66: zinc-finger 60.0 6.8 0.00015 24.3 1.7 14 72-85 3-16 (47)
448 KOG4218 Nuclear hormone recept 60.0 3.6 7.7E-05 37.2 0.5 28 73-110 17-44 (475)
449 PF11672 DUF3268: Protein of u 59.7 21 0.00045 26.6 4.5 41 72-112 3-45 (102)
450 PRK07063 short chain dehydroge 59.6 34 0.00074 28.6 6.5 45 177-223 6-53 (260)
451 PRK12336 translation initiatio 59.6 6.6 0.00014 32.8 2.1 36 70-111 97-132 (201)
452 PRK08339 short chain dehydroge 59.5 38 0.00082 28.7 6.9 45 177-223 7-54 (263)
453 PF06044 DRP: Dam-replacing fa 59.3 5 0.00011 34.5 1.3 39 67-111 27-66 (254)
454 KOG1201 Hydroxysteroid 17-beta 59.3 25 0.00055 31.3 5.7 48 176-225 36-86 (300)
455 COG1996 RPC10 DNA-directed RNA 59.2 5.9 0.00013 25.5 1.3 32 70-110 5-36 (49)
456 PRK09880 L-idonate 5-dehydroge 59.0 37 0.00081 29.9 7.0 44 176-220 168-213 (343)
457 TIGR01053 LSD1 zinc finger dom 58.9 10 0.00022 22.0 2.1 27 72-107 2-28 (31)
458 PRK07066 3-hydroxybutyryl-CoA 58.9 24 0.00053 31.6 5.7 42 178-221 7-50 (321)
459 PLN03154 putative allyl alcoho 58.5 30 0.00065 30.8 6.3 47 174-222 155-204 (348)
460 PRK14873 primosome assembly pr 58.4 7.1 0.00015 38.6 2.3 21 202-222 571-591 (665)
461 PRK05654 acetyl-CoA carboxylas 58.4 2.9 6.2E-05 37.1 -0.3 32 71-110 27-58 (292)
462 PRK12286 rpmF 50S ribosomal pr 58.4 9.5 0.00021 25.3 2.2 24 70-107 26-49 (57)
463 COG0266 Nei Formamidopyrimidin 58.3 5.9 0.00013 34.8 1.6 29 71-106 245-273 (273)
464 PF03514 GRAS: GRAS domain fam 58.3 25 0.00054 32.1 5.8 57 167-223 100-167 (374)
465 PF05605 zf-Di19: Drought indu 58.2 3.4 7.4E-05 26.7 0.1 36 70-106 1-39 (54)
466 TIGR02443 conserved hypothetic 58.0 8.7 0.00019 25.7 2.0 35 71-113 9-46 (59)
467 cd00401 AdoHcyase S-adenosyl-L 57.8 39 0.00086 31.4 7.0 51 167-219 190-243 (413)
468 COG2824 PhnA Uncharacterized Z 57.8 7 0.00015 29.3 1.7 30 71-110 3-32 (112)
469 PF00107 ADH_zinc_N: Zinc-bind 57.7 15 0.00032 27.3 3.6 33 187-220 1-33 (130)
470 COG4640 Predicted membrane pro 57.5 5.8 0.00013 36.5 1.4 33 71-116 1-33 (465)
471 CHL00174 accD acetyl-CoA carbo 57.3 3.4 7.3E-05 36.7 -0.1 32 71-110 38-69 (296)
472 COG5349 Uncharacterized protei 57.3 4.6 0.0001 31.0 0.7 32 71-110 21-52 (126)
473 smart00653 eIF2B_5 domain pres 57.2 6.8 0.00015 29.6 1.6 31 70-106 79-109 (110)
474 COG5216 Uncharacterized conser 57.1 6.3 0.00014 26.3 1.2 39 64-107 15-53 (67)
475 PF09526 DUF2387: Probable met 56.8 8.1 0.00018 26.8 1.8 34 72-113 9-45 (71)
476 PRK06172 short chain dehydroge 56.8 43 0.00094 27.8 6.7 45 177-223 6-53 (253)
477 PHA02942 putative transposase; 56.7 8.6 0.00019 35.4 2.5 28 70-107 324-351 (383)
478 COG4338 Uncharacterized protei 56.6 3.8 8.2E-05 26.3 0.1 18 67-84 8-25 (54)
479 TIGR03366 HpnZ_proposed putati 56.4 42 0.00092 28.7 6.7 44 176-220 119-164 (280)
480 PRK05876 short chain dehydroge 56.0 50 0.0011 28.2 7.1 44 177-222 5-51 (275)
481 TIGR01627 A_thal_3515 uncharac 55.9 31 0.00067 29.3 5.4 67 161-229 23-89 (225)
482 PF05876 Terminase_GpA: Phage 55.8 8.8 0.00019 37.1 2.5 41 69-110 198-241 (557)
483 TIGR02818 adh_III_F_hyde S-(hy 55.7 49 0.0011 29.6 7.2 46 174-220 182-229 (368)
484 PF01861 DUF43: Protein of unk 55.6 69 0.0015 27.7 7.6 50 176-226 43-92 (243)
485 PF02254 TrkA_N: TrkA-N domain 55.5 27 0.00059 25.4 4.7 34 186-221 4-41 (116)
486 PLN02740 Alcohol dehydrogenase 55.1 44 0.00094 30.1 6.8 45 174-219 195-241 (381)
487 PLN00209 ribosomal protein S27 54.9 10 0.00022 27.3 2.1 41 66-114 31-71 (86)
488 PF06827 zf-FPG_IleRS: Zinc fi 54.9 5.6 0.00012 22.4 0.6 27 73-106 3-29 (30)
489 PLN02780 ketoreductase/ oxidor 54.5 37 0.0008 30.0 6.1 45 177-223 52-99 (320)
490 PRK09521 exosome complex RNA-b 54.5 9.2 0.0002 31.4 2.1 27 73-109 151-177 (189)
491 PRK06113 7-alpha-hydroxysteroi 54.3 49 0.0011 27.6 6.6 44 177-222 10-56 (255)
492 PRK08945 putative oxoacyl-(acy 54.2 48 0.001 27.4 6.5 45 177-223 11-58 (247)
493 TIGR02822 adh_fam_2 zinc-bindi 54.1 47 0.001 29.2 6.8 46 173-220 161-208 (329)
494 PRK07062 short chain dehydroge 53.6 47 0.001 27.8 6.5 45 177-223 7-54 (265)
495 PRK06057 short chain dehydroge 53.3 46 0.001 27.7 6.3 42 177-220 6-50 (255)
496 PRK06125 short chain dehydroge 53.2 56 0.0012 27.3 6.8 45 177-223 6-53 (259)
497 PF03492 Methyltransf_7: SAM d 53.0 19 0.00041 32.4 4.0 21 177-197 16-36 (334)
498 smart00734 ZnF_Rad18 Rad18-lik 52.7 7.2 0.00016 21.5 0.8 10 72-81 2-11 (26)
499 KOG2793 Putative N2,N2-dimethy 52.7 23 0.00049 30.7 4.3 41 177-218 86-126 (248)
500 PTZ00083 40S ribosomal protein 52.2 12 0.00027 26.8 2.1 41 66-114 30-70 (85)
No 1
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.73 E-value=3.4e-17 Score=142.62 Aligned_cols=127 Identities=18% Similarity=0.261 Sum_probs=89.4
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccccCCcccccccchhhhhccCchhhHHHHHHH
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~w 150 (232)
.|.||+|+++|...+ ..++|.++|.++..++||++++........+.. ...... ..
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~-----------d~~~~~--~a 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG-----------DNKEMM--QA 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC-----------cCHHHH--HH
Confidence 489999999996542 579999999999999999999964222211111 000111 11
Q ss_pred HHHHHhcCCCCcHHH--HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHhh
Q 026825 151 RQNFVWGGFPGPEKE--FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 151 r~~f~~~g~~~~~~~--~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~---~~VvGvD~S~~ml~~A~~~~~ 222 (232)
|+.|+..|+|.+... ...+.+.+.. ...+|||+|||+|.++..+++.... ..|+|+|+|+.|++.|+++..
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~ 133 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLDE-KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP 133 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcCC-CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC
Confidence 567778888877432 2344444443 4578999999999999999876431 379999999999999998753
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=7.5e-14 Score=119.18 Aligned_cols=93 Identities=28% Similarity=0.378 Sum_probs=79.0
Q ss_pred CCccccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChH
Q 026825 112 GTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLF 191 (232)
Q Consensus 112 ~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~ 191 (232)
+..+..+|+.+++.||.+ |++++++.++.||+.+.. .+...++.+|||||||||.+
T Consensus 10 ~~~v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i~---------------~~~~~~g~~vLDva~GTGd~ 65 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALIS---------------LLGIKPGDKVLDVACGTGDM 65 (238)
T ss_pred HHHHHHHHHhhHHHHHhh---------cccccCcchHHHHHHHHH---------------hhCCCCCCEEEEecCCccHH
Confidence 345667778889999999 999999999999997533 33333689999999999999
Q ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 192 SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 192 ~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
+..+++....++|+|+|+|++||+.|++++.+.+..+
T Consensus 66 a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~ 102 (238)
T COG2226 66 ALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN 102 (238)
T ss_pred HHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc
Confidence 9999999657799999999999999999999866543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.46 E-value=6.7e-14 Score=119.58 Aligned_cols=92 Identities=24% Similarity=0.375 Sum_probs=43.1
Q ss_pred CCccccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChH
Q 026825 112 GTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLF 191 (232)
Q Consensus 112 ~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~ 191 (232)
+.++..+|+.+++.||.+ |.+++++.++.||+.... .+...++.+|||+|||||.+
T Consensus 6 ~~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~~---------------~~~~~~g~~vLDv~~GtG~~ 61 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLIK---------------LLGLRPGDRVLDVACGTGDV 61 (233)
T ss_dssp ----------------------------------------SHHHH---------------HHT--S--EEEEET-TTSHH
T ss_pred HHHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHHh---------------ccCCCCCCEEEEeCCChHHH
Confidence 456777888889999999 999999999999997533 44455688999999999999
Q ss_pred HHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 192 SRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 192 ~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+..++++ ++.++|+|+|+|++||+.|++++.+.+..
T Consensus 62 ~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~ 98 (233)
T PF01209_consen 62 TRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ 98 (233)
T ss_dssp HHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC
Confidence 9999887 55679999999999999999999876543
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.15 E-value=7.3e-11 Score=102.45 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=64.3
Q ss_pred cccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHH
Q 026825 115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194 (232)
Q Consensus 115 ~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~ 194 (232)
+...|+..++.||.+ +...+.+.+..|++.... .+...++.+|||+|||+|.++..
T Consensus 35 v~~~f~~~A~~YD~~---------~~~~s~g~~~~~r~~~~~---------------~~~~~~~~~VLDlGcGtG~~~~~ 90 (261)
T PLN02233 35 RQALFNRIAPVYDNL---------NDLLSLGQHRIWKRMAVS---------------WSGAKMGDRVLDLCCGSGDLAFL 90 (261)
T ss_pred HHHHHHHhhhHHHHh---------hhhhcCChhHHHHHHHHH---------------HhCCCCCCEEEEECCcCCHHHHH
Confidence 344556667888887 666666677778775322 34444578999999999999999
Q ss_pred HHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 195 FAKS-GLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 195 la~~-g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+++. ++.++|+|+|+|++|++.|+++..
T Consensus 91 la~~~~~~~~V~gvD~S~~ml~~A~~r~~ 119 (261)
T PLN02233 91 LSEKVGSDGKVMGLDFSSEQLAVAASRQE 119 (261)
T ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence 9887 555699999999999999998764
No 5
>PRK05785 hypothetical protein; Provisional
Probab=99.11 E-value=7.3e-11 Score=100.40 Aligned_cols=82 Identities=32% Similarity=0.391 Sum_probs=61.7
Q ss_pred ccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHH
Q 026825 116 DMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIF 195 (232)
Q Consensus 116 d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~l 195 (232)
...|+..++.||.+ |.+++++.+..|++.++. .+...... +.+|||||||||.++..+
T Consensus 12 ~~~f~~iA~~YD~~---------n~~~s~g~~~~wr~~~~~-----------~l~~~~~~--~~~VLDlGcGtG~~~~~l 69 (226)
T PRK05785 12 QEAYNKIPKAYDRA---------NRFISFNQDVRWRAELVK-----------TILKYCGR--PKKVLDVAAGKGELSYHF 69 (226)
T ss_pred HHHHHhhhHHHHHh---------hhhccCCCcHHHHHHHHH-----------HHHHhcCC--CCeEEEEcCCCCHHHHHH
Confidence 34455667788887 666666677778776432 23333333 689999999999999999
Q ss_pred HHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 196 AKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 196 a~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
++.. +.+|+|+|+|++|++.|+++
T Consensus 70 ~~~~-~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 70 KKVF-KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred HHhc-CCEEEEECCCHHHHHHHHhc
Confidence 9984 23999999999999999886
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.10 E-value=2.8e-10 Score=85.19 Aligned_cols=47 Identities=32% Similarity=0.435 Sum_probs=41.7
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
|+.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 47 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE 47 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999999953345999999999999999999943
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.07 E-value=2.7e-10 Score=96.33 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=47.1
Q ss_pred HhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
...+...++.+|||+|||+|.++..+++. ++.++|+|+|+|+.|++.|++++...+
T Consensus 38 l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 94 (231)
T TIGR02752 38 MKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG 94 (231)
T ss_pred HHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 33556556889999999999999999887 455699999999999999999987544
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.98 E-value=5.9e-10 Score=95.17 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=77.5
Q ss_pred CCccccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChH
Q 026825 112 GTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLF 191 (232)
Q Consensus 112 ~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~ 191 (232)
+..+...|+..+..||.+ |+.++.+..+.|+..+.. .|.+.++.++||++||||.+
T Consensus 59 e~~V~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~v~---------------~L~p~~~m~~lDvaGGTGDi 114 (296)
T KOG1540|consen 59 ERLVHHVFESVAKKYDIM---------NDAMSLGIHRLWKDMFVS---------------KLGPGKGMKVLDVAGGTGDI 114 (296)
T ss_pred hhHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHhhh---------------ccCCCCCCeEEEecCCcchh
Confidence 344556677778889999 999999999999887655 77777889999999999999
Q ss_pred HHHHHHhCCC------CeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 192 SRIFAKSGLF------SLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 192 ~~~la~~g~~------~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+..+.+.-.. ++|+++|+|+.||+.++++..+.+..
T Consensus 115 aFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~ 156 (296)
T KOG1540|consen 115 AFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156 (296)
T ss_pred HHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC
Confidence 9888887544 79999999999999999999765543
No 9
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.98 E-value=3.1e-09 Score=87.94 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 147 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 147 e~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+..|++.++. ...+...++. +.+|||+|||+|..+..++......+|+|+|+|+.|++.|++++++.+.
T Consensus 26 ~~~~~~~~~d---------~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l 94 (187)
T PRK00107 26 EELWERHILD---------SLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL 94 (187)
T ss_pred HHHHHHHHHH---------HHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC
Confidence 3467776644 2233344443 7899999999999999998876566999999999999999999988765
No 10
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.97 E-value=1.3e-09 Score=86.51 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCcChHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~-~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
.+.+|||+|||+|.++..+++ .+...+++|+|+|+.|++.|++++++.+..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ 54 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD 54 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc
Confidence 478999999999999999994 455669999999999999999998876654
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.95 E-value=2.4e-09 Score=89.09 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.+.+...++++|||+|||+|.++..|+++|. +|+|+|+|+.|++.|++++...+.
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~~ 77 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAENL 77 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence 344455555678999999999999999999987 999999999999999998876543
No 12
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.93 E-value=2.5e-09 Score=88.80 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=47.6
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.+.+.+...++++|||+|||+|.++..++++|. +|+|+|+|+.|++.+++++...+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~ 76 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN 76 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC
Confidence 344455555678999999999999999999987 99999999999999999887554
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=6.5e-09 Score=89.66 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=47.4
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.+.++ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++.+.+.
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~ 91 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV 91 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence 3444454 3468999999999999999999987 999999999999999999876553
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.87 E-value=6.2e-09 Score=89.53 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
++.+|||||||+|..+..+++. .++.+|+|+|+|+.|++.|++++...+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~ 106 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK 106 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 4789999999999999888873 345699999999999999999997644
No 15
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.86 E-value=1.7e-08 Score=76.45 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.++++++..+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 67 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG 67 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC
Confidence 444555545779999999999999999998655699999999999999999987654
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.85 E-value=1.2e-08 Score=83.93 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++.+|||+|||+|.++..++..++.++|+|+|+|+.|++.+++++++.+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~ 91 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL 91 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC
Confidence 47899999999999999998877667999999999999999999887653
No 17
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.84 E-value=2.2e-08 Score=82.32 Aligned_cols=59 Identities=22% Similarity=0.103 Sum_probs=50.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
..+...+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++...+
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~ 79 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG 79 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 34445666556889999999999999999998766799999999999999999987654
No 18
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=1.1e-08 Score=89.21 Aligned_cols=61 Identities=21% Similarity=0.179 Sum_probs=53.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
++.+.+.+...+|.+|||||||.|.+++++++.. +.+|+|+++|+++++.+++++...|.-
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 4566777888889999999999999999999994 239999999999999999999988764
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=98.83 E-value=1.6e-08 Score=91.02 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=43.3
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.++.+|||||||+|.++..+++.. +.+|+|||+|+.|++.|++++...+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~ 166 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL 166 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 467899999999999999999873 23999999999999999998876553
No 20
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.83 E-value=3.9e-09 Score=94.06 Aligned_cols=46 Identities=28% Similarity=0.431 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc
Confidence 578999999999999999999987 9999999999999999998754
No 21
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.82 E-value=1.3e-08 Score=84.52 Aligned_cols=55 Identities=24% Similarity=0.351 Sum_probs=45.1
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+.+.++..+++++||+|||.|+.+.+|+++|+ .|+++|+|+.+++.+++.+.+.+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~ 76 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG 76 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC
Confidence 33445555689999999999999999999999 99999999999999988877654
No 22
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.82 E-value=2.4e-08 Score=82.79 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=50.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++...+.
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~ 89 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV 89 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 345666666678899999999999999998776556999999999999999999876553
No 23
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.80 E-value=2.3e-08 Score=84.39 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
++++|||+|||.|..+..|+++|+ +|+|||+|+.+++.+.+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~ 75 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAE 75 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHH
Confidence 578999999999999999999999 999999999999987553
No 24
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.80 E-value=1.7e-08 Score=85.03 Aligned_cols=48 Identities=38% Similarity=0.597 Sum_probs=43.4
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.++.+|||+|||+|.++..+++.+. +|+|+|+|++|+..|++++...+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~ 101 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD 101 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence 4578999999999999999998876 99999999999999999987554
No 25
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.79 E-value=9.5e-09 Score=87.28 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=47.3
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~ 231 (232)
.++.+|||||||-|.++..+++.|+ .|+|+|+|+.+++.|+.++.+.+. +.+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv-~i~y 110 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGV-NIDY 110 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccc-cccc
Confidence 4689999999999999999999998 999999999999999999887664 3444
No 26
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.75 E-value=2.6e-08 Score=85.85 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=45.1
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER 72 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc
Confidence 34555666678999999999999999999986555999999999999999874
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.75 E-value=2.1e-08 Score=86.31 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=47.2
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++.+
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~ 77 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD 77 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC
Confidence 44455655668899999999999999999886556999999999999999998653
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.74 E-value=2.5e-08 Score=81.01 Aligned_cols=61 Identities=28% Similarity=0.391 Sum_probs=51.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
..+.+.+...+.++|||+|||+|.++..+++.++..+|+++|+++.+++.|++++..++..
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~ 81 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE 81 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 4455555444688999999999999999999988667999999999999999999887643
No 29
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.74 E-value=6.1e-08 Score=81.13 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+.+.+...++.+|||+|||+|..+..+++.. ..++|+|+|++++|++.|++++...+.
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~ 122 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY 122 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 445556666678899999999999999888863 245999999999999999999887653
No 30
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.73 E-value=3e-08 Score=85.06 Aligned_cols=54 Identities=31% Similarity=0.426 Sum_probs=46.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
..+.+.++..+..+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++..
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~ 85 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCC
Confidence 4455566655578999999999999999988876 99999999999999999864
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.72 E-value=2.7e-08 Score=73.56 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=36.6
Q ss_pred EEEEcCCcChHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 181 ILDiGCGtG~~~~~la~~g---~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
|||+|||+|..+..+.+.. +..+++|+|+|++|++.|+++....+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~ 48 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG 48 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC
Confidence 7999999999999999885 33599999999999999999997644
No 32
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.72 E-value=3.5e-08 Score=82.73 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
++.+|||||||+|.++..+++.....+++|+|+|+.|++.|++++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~ 88 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP 88 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC
Confidence 4678999999999999999887434599999999999999998764
No 33
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.72 E-value=1.5e-08 Score=86.94 Aligned_cols=47 Identities=32% Similarity=0.569 Sum_probs=43.0
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+.+|||+|||+|.++..|++.|+ .|+|||+++.|++.|++....++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~ 136 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV 136 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch
Confidence 57899999999999999999998 999999999999999999665543
No 34
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.72 E-value=5.1e-08 Score=82.02 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=50.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+.+.+...++.+|||||||+|.++..+++... .++|+|+|+++.|++.|++++.+.+.
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~ 127 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL 127 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 4455566666789999999999999999998843 45699999999999999999987664
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.71 E-value=3.8e-08 Score=86.49 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++++|||+|||+|.++..+++.|. +|+|+|+|+.|++.+++++...+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence 457999999999999999999987 999999999999999999876553
No 36
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.71 E-value=4.7e-08 Score=82.37 Aligned_cols=48 Identities=35% Similarity=0.500 Sum_probs=43.4
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~ 109 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG 109 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence 4578999999999999999999887 89999999999999999987654
No 37
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.71 E-value=4.3e-08 Score=81.90 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++...+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~ 89 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL 89 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC
Confidence 57899999999999999999886656899999999999999999876543
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.70 E-value=6.9e-08 Score=84.47 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=48.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
++.+.+.+...++.+|||||||.|.++..++++ |. +|+||.+|+++++.|++++.+.|+.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitlS~~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITLSEEQAEYARERIREAGLE 111 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEECCHHHHHHHHHHHHhcCCC
Confidence 456677777788999999999999999999999 76 9999999999999999999988764
No 39
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.69 E-value=5.9e-08 Score=82.20 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~ 219 (232)
.++++|||+|||.|..+..|+++|+ +|+|||+|+.+++.+.+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~ 77 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFA 77 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHH
Confidence 3578999999999999999999999 99999999999998754
No 40
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=6e-08 Score=85.36 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=57.1
Q ss_pred cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+.|+....-++++.+++. ++.++||+|||+|.+++..++.|+ .+|+|+|+++-+++.|++++..++..
T Consensus 144 G~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 144 GTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred CCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCc
Confidence 345555555677777766 489999999999999999999998 48999999999999999999887653
No 41
>PRK14968 putative methyltransferase; Provisional
Probab=98.69 E-value=5.9e-08 Score=78.96 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=52.0
Q ss_pred CCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 158 g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
|.|.|......+...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++...+.
T Consensus 4 ~~~~p~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 4 EVYEPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGK--KVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred cccCcchhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcc--eEEEEECCHHHHHHHHHHHHHcCC
Confidence 3344444444455555445678999999999999999999865 999999999999999999876543
No 42
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.68 E-value=1e-07 Score=80.22 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=50.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+.+.+...++.+|||||||+|.++..+++. +.+++|+|+|++++|++.|+++++..+.
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~ 126 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY 126 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 44555666667899999999999999998887 4446999999999999999999987653
No 43
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.67 E-value=5.7e-08 Score=79.31 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=47.0
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.+...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~ 65 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN 65 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC
Confidence 344444444568999999999999999999987 99999999999999999987554
No 44
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.66 E-value=8.4e-08 Score=83.37 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=48.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.....+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|++++..
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc
Confidence 335566666777778999999999999999887753 24999999999999999998764
No 45
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.66 E-value=7.5e-08 Score=87.75 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=51.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
...+.+.++....++|||+|||+|.++..++++++..+|+++|+|+.|++.|++++..++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~ 276 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM 276 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 456777777655679999999999999999999877799999999999999999987553
No 46
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.66 E-value=4.1e-08 Score=86.66 Aligned_cols=59 Identities=31% Similarity=0.474 Sum_probs=49.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
++.+.++.. ++.+|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++..++..
T Consensus 152 l~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~ 210 (295)
T PF06325_consen 152 LELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVE 210 (295)
T ss_dssp HHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred HHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCC
Confidence 455555544 478999999999999999999998 48999999999999999999877654
No 47
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.64 E-value=5.4e-08 Score=81.72 Aligned_cols=48 Identities=35% Similarity=0.495 Sum_probs=41.8
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
++.....-|||||||+|.-+..+.+.|. ..+|+|+|+.||++|.++.-
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~ 93 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL 93 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh
Confidence 3433578999999999999999999998 99999999999999997543
No 48
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.64 E-value=5.2e-08 Score=86.76 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=48.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+.
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l 220 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL 220 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3344444433578999999999999999999886 999999999999999999987764
No 49
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.64 E-value=6.2e-08 Score=80.35 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
...++||||||+|.++..+++..++.+|+|+|+++.|++.|++++.+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l 65 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL 65 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC
Confidence 35799999999999999999998777999999999999999999887654
No 50
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.63 E-value=1.2e-07 Score=82.70 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
....+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++.
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc
Confidence 345566666666788999999999999999999986 99999999999999999874
No 51
>PRK06202 hypothetical protein; Provisional
Probab=98.63 E-value=9.3e-08 Score=81.21 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~----g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..++.+|||+|||+|.++..+++. |++.+|+|+|+|++|++.|+++...
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 110 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR 110 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc
Confidence 345789999999999998888753 5456999999999999999998654
No 52
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.63 E-value=2.4e-07 Score=76.97 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=48.2
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
....+...++.+|||+|||+|.++..+++. +...+|+++|+++.|++.|++++...+
T Consensus 32 ~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g 89 (198)
T PRK00377 32 ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG 89 (198)
T ss_pred HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 345566667899999999999999998875 444699999999999999999988765
No 53
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.62 E-value=1e-07 Score=81.29 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCcChHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g--~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|++++.+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~ 103 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH 103 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 47799999999999999998863 35699999999999999999987643
No 54
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=1.5e-07 Score=76.26 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=46.4
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+.+.+...++.+|||+|||+|.++..+++++. +|+|+|+++.|++.+++++..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc
Confidence 344555555678999999999999999999865 999999999999999999864
No 55
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.61 E-value=1e-07 Score=68.35 Aligned_cols=42 Identities=38% Similarity=0.657 Sum_probs=36.6
Q ss_pred EEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 182 IDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 182 LDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
||+|||+|.++..+++. +. +|+|+|+|++|++.++++....+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~--~v~~~D~~~~~~~~~~~~~~~~~ 43 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA--SVTGIDISEEMLEQARKRLKNEG 43 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC--EEEEEES-HHHHHHHHHHTTTST
T ss_pred CEecCcCCHHHHHHHhccCC--EEEEEeCCHHHHHHHHhcccccC
Confidence 89999999999999999 54 99999999999999999987653
No 56
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.61 E-value=9.9e-08 Score=82.22 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++.+|||+|||+|.++..+++.|. .+|+|+|+|+.|++.|++++..++.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence 488999999999999999888876 3699999999999999999987654
No 57
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.61 E-value=1.5e-07 Score=87.56 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=50.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+.
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~ 344 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGL 344 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence 45555666655678999999999999999999886 999999999999999999886654
No 58
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.60 E-value=2.5e-07 Score=77.51 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+...+...++.+|||+|||+|.++..+++.+. +|+++|++++|++.|++++++.+.
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~ 125 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGL 125 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCC
Confidence 4455566666789999999999999998888865 899999999999999999887543
No 59
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.59 E-value=9.9e-08 Score=85.32 Aligned_cols=47 Identities=28% Similarity=0.431 Sum_probs=41.9
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
.++.+|||||||+|.++..+++.|. +|+|||+|++|++.|++++...
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~ 176 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD 176 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc
Confidence 3567999999999999999998877 9999999999999999887543
No 60
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.58 E-value=1.2e-07 Score=78.99 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=43.7
Q ss_pred hcCCCCCCeEEEEcCCcChHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhh
Q 026825 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~-~~VvGvD~S~~ml~~A~~~~~ 222 (232)
.+...++.+|||+|||+|.++..+++.+.. .+++|+|+++.+++.+++++.
T Consensus 34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 34 LIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred HhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 333346789999999999999999988754 589999999999999999875
No 61
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.58 E-value=2.4e-07 Score=82.57 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=42.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~ 218 (232)
..+...+...++++|||||||+|.++..++..|+ ..|+|+|+|+.|+.+++
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFE 161 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHH
Confidence 3455556666789999999999999999988886 37999999999998653
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.57 E-value=2.5e-07 Score=83.41 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=51.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
...+.+.++....++|||+|||+|.++..++++++..+|+++|+|+.|++.|+++++.++.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l 245 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL 245 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3555666665456799999999999999999997767999999999999999999887653
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.57 E-value=1.1e-07 Score=79.67 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=50.9
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
-+...++.....+|.|+|||+|..+..|+++.+.+.|+|+|-|++||+.|++++.+..
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~ 78 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDAT 78 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCc
Confidence 3555677777899999999999999999999888899999999999999999877543
No 64
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.57 E-value=4.5e-07 Score=74.51 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=55.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.....+..|.+.++.+++|||||||..+..++..++.++|+++|-++++++..++++++.+.
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~ 83 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV 83 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC
Confidence 34455677888889999999999999999999888889999999999999999999999884
No 65
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.57 E-value=2.4e-07 Score=82.00 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
++.+|||+|||+|..+..+.+... ..+|+|+|+|++||+.|++++.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence 368999999999999999998853 24999999999999999999765
No 66
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.57 E-value=9.1e-08 Score=80.82 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 158 g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
+|--|+...++|.. +...+-.++||+|||||.....+..... ++.|||||++||+.|.++
T Consensus 107 ~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 107 GYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK 166 (287)
T ss_pred cCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc
Confidence 45555544444443 4444467999999999999999999987 999999999999999886
No 67
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=2.7e-07 Score=75.84 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=44.7
Q ss_pred CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
....+..|+|+|||||.++...+-.|+ .+|+|+|+++++++.|+++..+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh
Confidence 345678899999999999999999997 5999999999999999999987
No 68
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.56 E-value=2.3e-07 Score=82.95 Aligned_cols=52 Identities=29% Similarity=0.446 Sum_probs=43.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~ 219 (232)
..+...+....+++|||||||+|.++..+++.|+ ..|+|+|+|+.|+.+++.
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a 163 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEA 163 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH
Confidence 4455566656689999999999999999999986 369999999999986544
No 69
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.55 E-value=1.6e-07 Score=79.07 Aligned_cols=54 Identities=31% Similarity=0.425 Sum_probs=45.5
Q ss_pred HhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhc
Q 026825 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
...+...++.+|||+|||+|.++..++..+. +.+++|+|+++.|++.+++++..
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 98 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD 98 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc
Confidence 3344444578999999999999999998874 46999999999999999999865
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.55 E-value=2.5e-07 Score=81.41 Aligned_cols=48 Identities=27% Similarity=0.400 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
++.+|||+|||+|.++..+++.|. .+|+|+|+|+.|++.|++++..++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n~ 206 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELNQ 206 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcC
Confidence 478999999999999999888875 489999999999999999988654
No 71
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.7e-07 Score=81.04 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=44.7
Q ss_pred eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+|||+|||+|.++..++..++.++|+|+|+|+.+++.|++++...+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l 159 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 79999999999999999998888999999999999999999998874
No 72
>PRK04266 fibrillarin; Provisional
Probab=98.53 E-value=4.8e-07 Score=77.06 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=45.0
Q ss_pred hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
.+...++.+|||+|||+|.++..+++....++|+|+|+++.|++.+.+++++.
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~ 119 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER 119 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc
Confidence 36666789999999999999999999853459999999999999888777654
No 73
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.52 E-value=4.1e-07 Score=79.95 Aligned_cols=50 Identities=22% Similarity=0.095 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|++++...+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~ 170 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL 170 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 45799999999999999999987666999999999999999999987653
No 74
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.52 E-value=4.5e-07 Score=78.56 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
...+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++..
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~ 73 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA 73 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc
Confidence 44555566655688999999999999999999976 999999999999999998865
No 75
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.51 E-value=3.5e-07 Score=84.09 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=43.5
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g 299 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG 299 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 3579999999999999999887655699999999999999999987654
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.51 E-value=5.1e-09 Score=77.00 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=37.7
Q ss_pred EEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 182 LDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
||||||+|.++..+.+..+..+++|+|+|+.|++.|++++.+...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~ 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC
Confidence 799999999999999995556999999999999999999887664
No 77
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.50 E-value=4.1e-07 Score=83.24 Aligned_cols=55 Identities=27% Similarity=0.359 Sum_probs=47.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+..+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+|++|++.|++++.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~--~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV--SVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc
Confidence 345556666667899999999999999999886 44 99999999999999999885
No 78
>PRK04148 hypothetical protein; Provisional
Probab=98.49 E-value=5.6e-07 Score=70.47 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=44.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcCh-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~-~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
+.+.+.++..++.++||||||+|. ++..|++.|. +|+|+|+++.+++.|+++.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhC
Confidence 445556665567899999999995 9999999998 9999999999999998874
No 79
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.49 E-value=4.7e-07 Score=71.43 Aligned_cols=40 Identities=35% Similarity=0.648 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~ 216 (232)
..++++|||||||+|.++..+++.+. +|+|+|+|+.|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh
Confidence 35689999999999999999999988 99999999999987
No 80
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.48 E-value=5.1e-07 Score=82.39 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=50.0
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+...+....+..+||||||+|.++..+++..++..++|+|+++.|+..|.+++.+.+.
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL 171 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL 171 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 34444444456799999999999999999998778999999999999999999987664
No 81
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.47 E-value=2.4e-07 Score=75.79 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=45.4
Q ss_pred CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
.+|||+|||+|.++..|++.|..+.++|+|.|+.+++.|+..+...+..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n 118 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN 118 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence 39999999999999999999998889999999999999998888776554
No 82
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.47 E-value=6.5e-07 Score=78.58 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=43.7
Q ss_pred CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+|||+|||+|.++..++...++.+|+|+|+|+.+++.|++++...+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~ 163 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL 163 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 699999999999999999987667999999999999999999886654
No 83
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.46 E-value=8e-07 Score=76.66 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=48.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
...+.+.+...++.+|||||||+|.++..+++.+. .|+++|+++.|++.+++++..
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~ 73 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL 73 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc
Confidence 44555566666688999999999999999999987 899999999999999998754
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=98.46 E-value=4.4e-07 Score=76.76 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=43.2
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~~ 83 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLAG 83 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHhC
Confidence 34578999999999999999988764 499999999999999999887544
No 85
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.45 E-value=8.7e-07 Score=79.26 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=48.3
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.+.+...++.+|||+|||+|.++..+++... .+.|+|+|++++|++.|++++++.+.
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~ 130 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI 130 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 344455555688999999999999999998743 24799999999999999999887654
No 86
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.45 E-value=3.9e-07 Score=84.46 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
...+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.|++.|++++..++.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~ 339 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGI 339 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCC
Confidence 34455555555578999999999999999999876 999999999999999999987664
No 87
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.44 E-value=5.8e-07 Score=75.69 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=50.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
..+.+.+...++.+|||||||+|+++..++.. +..+.|++||+.+..++.|++++...+..
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~ 123 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID 123 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC
Confidence 45666777788999999999999999999998 55557999999999999999999976643
No 88
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.44 E-value=9e-07 Score=75.39 Aligned_cols=59 Identities=24% Similarity=0.134 Sum_probs=47.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+...+.. .+.+|||+|||+|.++..+++.....+++|+|+|+.|++.|++++...+.
T Consensus 78 ~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~ 136 (251)
T TIGR03534 78 EAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL 136 (251)
T ss_pred HHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 334444433 35699999999999999999986556999999999999999999876554
No 89
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.43 E-value=6.3e-07 Score=67.45 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=43.4
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.|++++...+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~ 48 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL 48 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC
Confidence 4689999999999999999999 45999999999999999999987653
No 90
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.42 E-value=1.2e-06 Score=77.48 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=49.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
...+.+.+...++.+|||||||+|.++..+.+.+. +|+|+|+++.|++.+++++...+
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~ 82 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP 82 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC
Confidence 34455556666688999999999999999999876 89999999999999999987543
No 91
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.42 E-value=4.6e-07 Score=82.65 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=48.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+..++...++.+|||+|||+|.++..++..+. +|+|||+++.+++.|+++++..+.
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~ 280 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGL 280 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCC
Confidence 3344444433467999999999999999998876 999999999999999999987764
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=98.41 E-value=6.2e-07 Score=78.21 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=48.5
Q ss_pred cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+.|+.|......+. +.....++|||+|||+|.++..++.+....+|+|+|+++.|++.|++++.
T Consensus 46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~ 109 (279)
T PHA03411 46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP 109 (279)
T ss_pred eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc
Confidence 44777776653332 22334679999999999999888776433599999999999999998754
No 93
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.41 E-value=1.2e-06 Score=75.70 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=42.2
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+.+|||+|||+|.++..+++.....+|+|+|+|+.|++.|++++...+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~ 134 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG 134 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 458999999999999999887554599999999999999999987654
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.41 E-value=1.1e-06 Score=78.23 Aligned_cols=49 Identities=22% Similarity=0.108 Sum_probs=44.1
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l 182 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL 182 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 3689999999999999999987667999999999999999999987653
No 95
>PRK08317 hypothetical protein; Provisional
Probab=98.40 E-value=1.4e-06 Score=73.08 Aligned_cols=53 Identities=30% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHH
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.+.+.+...++.+|||+|||+|.++..+++.. +.++|+|+|+|+.+++.|+++
T Consensus 10 ~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 10 RTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 34455666668899999999999999999874 456999999999999999998
No 96
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.40 E-value=9.4e-07 Score=76.74 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=43.2
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..++.+|||+|||+|..+..+++. +..++|+|+|+|+.|++.|+++....+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~ 127 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY 127 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC
Confidence 345889999999999888777665 5555899999999999999998876543
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.39 E-value=1.4e-06 Score=75.37 Aligned_cols=54 Identities=22% Similarity=0.111 Sum_probs=46.0
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+...+...++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++.
T Consensus 100 ~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 100 ALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred HHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 333344445789999999999999999999766799999999999999999987
No 98
>PRK06922 hypothetical protein; Provisional
Probab=98.38 E-value=1e-06 Score=84.70 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=43.0
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|++++...
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~ 465 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE 465 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc
Confidence 478999999999999999998877779999999999999999987543
No 99
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.38 E-value=1.3e-06 Score=74.03 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 146 ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
++..|+..-.......+...+..+...+...++.+||+.|||.|..+..|+++|. +|+|+|+|+.+++.+.+...
T Consensus 6 W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~ 80 (218)
T PF05724_consen 6 WEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENN 80 (218)
T ss_dssp HHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCT
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhc
Confidence 3445554332222223333344444445556678999999999999999999999 99999999999999965543
No 100
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.37 E-value=4.6e-07 Score=75.11 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=44.7
Q ss_pred hhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 171 ~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..|+...-.++||+|||+|.++..|+.+.. +++++|+|+.+++.|+++++...+
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~ 90 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPH 90 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SS
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCC
Confidence 346776678999999999999999999986 999999999999999999987654
No 101
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.37 E-value=1.2e-06 Score=73.65 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
.+.+|||+|||+|.++..+++.++..+++|+|+|+.|++.+++++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence 3579999999999999999999876789999999999999999875
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.37 E-value=1.4e-06 Score=81.58 Aligned_cols=58 Identities=24% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|+++...
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~ 311 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG 311 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc
Confidence 34555565655567899999999999999888863 34999999999999999988753
No 103
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.7e-06 Score=75.97 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=57.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+.-.+.+++.++...+++|||+|||.|.++..+++..+..+++-+|++..+++.|++++..++.-
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~ 208 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE 208 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence 44567888888887778999999999999999999998889999999999999999999976544
No 104
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.35 E-value=7.4e-07 Score=78.43 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=42.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~ 216 (232)
..+...++...+++|||||||+|+++..++++|+ ..|+|+|++.--+.+
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQ 153 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHH
Confidence 5566677677899999999999999999999998 489999999887665
No 105
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=5.5e-07 Score=83.48 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231 (232)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~ 231 (232)
+..+....++++..++.++||+-||.|.|+..++++.. +|+|+|+++++++.|+++++.++..|..|
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f 345 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEF 345 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence 44566777778777788999999999999999998887 99999999999999999999998877555
No 106
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.33 E-value=2.5e-06 Score=71.34 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.++.+|||+|||+|.++..+..++. .+|+++|.++.+++.|+++++..+.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~ 101 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKA 101 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCC
Confidence 3467999999999999987655554 4999999999999999999987763
No 107
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.33 E-value=1.5e-06 Score=81.43 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=44.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
..+.+.++..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~ 79 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESIN 79 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHh
Confidence 4455566655678999999999999999999876 9999999999999887654
No 108
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.32 E-value=1.6e-06 Score=71.65 Aligned_cols=52 Identities=15% Similarity=0.388 Sum_probs=41.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
++.+.+.++. +.+|||+|||+|.++..+++... ..++|+|+|++|++.|+++
T Consensus 4 ~~~i~~~i~~--~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~ 55 (194)
T TIGR02081 4 LESILNLIPP--GSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR 55 (194)
T ss_pred HHHHHHhcCC--CCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc
Confidence 3455556654 77999999999999999876632 3889999999999998763
No 109
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.32 E-value=1.3e-06 Score=79.12 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+..+.+++... ++++||++||+|.++..+++... +|+|||+++.|++.|++++..++.
T Consensus 187 ~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 187 LEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred HHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence 34444555432 34799999999999999998875 999999999999999999987764
No 110
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.32 E-value=1.5e-06 Score=71.75 Aligned_cols=52 Identities=13% Similarity=0.402 Sum_probs=44.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
+..+.+++++ +.+|||+|||.|.++..|.+. .+...+|||++++.+..|.++
T Consensus 4 ~~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r 55 (193)
T PF07021_consen 4 LQIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR 55 (193)
T ss_pred HHHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc
Confidence 3566777776 899999999999999999885 235999999999999999876
No 111
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.7e-06 Score=71.26 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
...+.+.|...++.+|||||||+|+.+..|++... +|+.+|..+...+.|++++...+..+
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 35667778888899999999999999999999987 99999999999999999999888644
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.30 E-value=1.8e-06 Score=74.19 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+..+......++|||+|||+|.++..++.+-...+++|||+.+.|.++|+++++.++
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~ 92 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP 92 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc
Confidence 334444445899999999999999999999555799999999999999999998744
No 113
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.30 E-value=2.7e-06 Score=72.44 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=41.3
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
+...++.+||+.|||.|..+..|+++|. +|+|+|+|+.+++.+.+..
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHc
Confidence 3333568999999999999999999999 8999999999999987743
No 114
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.30 E-value=2.6e-06 Score=76.68 Aligned_cols=46 Identities=20% Similarity=0.119 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
++.+|||||||+|.++..+++.....+|+|+|+|++|++.|+++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~ 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh
Confidence 4679999999999999988876433599999999999999999865
No 115
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.30 E-value=2.6e-06 Score=76.27 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=47.5
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.......++..|||+|||+|.++..++..+. +++|+|+++.|++.|++++++.+.
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~ 229 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI 229 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC
Confidence 344444445688999999999999999888776 999999999999999999987654
No 116
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.29 E-value=8.5e-07 Score=80.28 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231 (232)
Q Consensus 164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~ 231 (232)
..+..+.++++..++ .+||+-||.|.++..+++.+. +|+|||+++.|++.|++++..++..+.+|
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f 248 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEF 248 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence 445667777776544 899999999999999999987 99999999999999999999887655443
No 117
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.27 E-value=3.2e-06 Score=80.01 Aligned_cols=48 Identities=19% Similarity=0.061 Sum_probs=42.7
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~ 186 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE 186 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 468999999999999999887555699999999999999999987655
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.27 E-value=3.7e-06 Score=71.19 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=47.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
..+...+...++.+|||||||+|.++..+.+.+. +|+|+|+++.+++.|++++...+
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~ 94 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG 94 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC
Confidence 4444555455688999999999999999998876 89999999999999999876543
No 119
>PHA03412 putative methyltransferase; Provisional
Probab=98.24 E-value=2.8e-06 Score=72.65 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=49.0
Q ss_pred cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHhh
Q 026825 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g---~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+.|+.|......+... ...+.+|||+|||+|.++..+++.. ...+|+|+|+++.|++.|++++.
T Consensus 31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 4578887654444322 2237899999999999999988752 23589999999999999998864
No 120
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.23 E-value=2.2e-06 Score=77.83 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=47.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+..+.+.+... +.++||++||+|.++..+++... +|+|||+++.|++.|++++..++.
T Consensus 196 ~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~ 253 (362)
T PRK05031 196 LEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGI 253 (362)
T ss_pred HHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCC
Confidence 44555555432 35799999999999999988865 999999999999999999987764
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.23 E-value=3.7e-06 Score=77.93 Aligned_cols=59 Identities=25% Similarity=0.247 Sum_probs=50.1
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+...+...++.+|||+|||+|..+..+++.+..++|+|+|+|+.|++.+++++.+.+.
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~ 293 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL 293 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 33445666678999999999999999999986546999999999999999999987653
No 122
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.22 E-value=5e-06 Score=76.40 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++++|||+|||+|.++..++..+. .+|+++|+|+.|++.|++++..++.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~Ngl 268 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELNKL 268 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 378999999999999887766554 4999999999999999999987764
No 123
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.20 E-value=5.7e-06 Score=73.18 Aligned_cols=59 Identities=17% Similarity=0.013 Sum_probs=49.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+.+.+...+..+|||||||+|.++..++++.++.+++++|+ +.|++.+++++.+.+.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl 197 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV 197 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc
Confidence 3445555555678999999999999999999987779999998 7899999999887654
No 124
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.19 E-value=4.4e-06 Score=74.63 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
.+.++||||||+|.+...++.+..+++++|+|+++.+++.|++++..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 468999999999988888877644569999999999999999999987
No 125
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.19 E-value=6.8e-06 Score=68.92 Aligned_cols=48 Identities=27% Similarity=0.480 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.+|||+|||+|.++..+++.+. +++|+|+++.|++.+++++...+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPL 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCC
Confidence 478999999999999999988876 899999999999999998876543
No 126
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.18 E-value=4.6e-06 Score=70.09 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSE 211 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~ 211 (232)
.++.+|||||||+|.++..+++.. ..+.|+|||+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 347899999999999999998884 446999999996
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.17 E-value=6.7e-06 Score=71.47 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=47.5
Q ss_pred hcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 172 YLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
.+...++.+|||+|||+|..+..++... ..+.|+++|+++.|++.++++++..+..
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 4555678999999999999999988873 2358999999999999999999887643
No 128
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.16 E-value=7.2e-06 Score=69.95 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=36.0
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~ 216 (232)
.++..+||+|||+|.|+..+++.|. .+|+|+|++++|+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHH
Confidence 4578999999999999999999975 489999999998876
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.15 E-value=5.5e-06 Score=81.34 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++++|||+|||+|.++..++..|. .+|++||+|+.+++.|++++..++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~ 586 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGL 586 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 378999999999999999999876 3799999999999999999987664
No 130
>PLN02672 methionine S-methyltransferase
Probab=98.15 E-value=5.1e-06 Score=84.27 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=43.5
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++..++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~ 166 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNA 166 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 468999999999999999998766699999999999999999998653
No 131
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.13 E-value=7.5e-06 Score=75.87 Aligned_cols=60 Identities=27% Similarity=0.305 Sum_probs=50.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+...+...++.+|||+|||+|..+..+++....++|+|+|+++.|++.+++++++.+.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~ 287 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL 287 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 344556677778999999999999999999874456999999999999999999987664
No 132
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.13 E-value=1.2e-05 Score=66.62 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.++||++||+|.++..+..+|. ..|++||.++.+++.+++++...+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~ 97 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS 97 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 478999999999999999999987 4899999999999999999987653
No 133
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.12 E-value=6.2e-06 Score=70.22 Aligned_cols=42 Identities=31% Similarity=0.234 Sum_probs=38.2
Q ss_pred CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
..++|+|||+|..++.++.... +|+|+|+|+.||+.|++...
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCC
Confidence 3899999999999999999977 99999999999999988754
No 134
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=7.2e-06 Score=71.08 Aligned_cols=62 Identities=24% Similarity=0.153 Sum_probs=49.9
Q ss_pred HHHHHhhcCC---CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 166 ~~~l~~~l~~---~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
.+++.+.+.. ..+..|||+|||+|.++..+...-+++.|++||.|+.++..|.++++..+..
T Consensus 134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~ 198 (328)
T KOG2904|consen 134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS 198 (328)
T ss_pred HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc
Confidence 3444444443 3355799999999999999998877889999999999999999999876543
No 135
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.10 E-value=7.8e-06 Score=71.17 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=35.5
Q ss_pred CCCeEEEEcCCcCh----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHh
Q 026825 177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 177 ~~~~ILDiGCGtG~----~~~~la~~g~-----~~~VvGvD~S~~ml~~A~~~~ 221 (232)
++.+|||+|||+|. ++..+++.+. +.+|+|+|+|+.||+.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45799999999996 4445555432 358999999999999999864
No 136
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.09 E-value=1.1e-05 Score=75.24 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=47.6
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
....+...++.+|||+|||+|..+..+++.. ..++|+|+|+|+.|++.+++++++.+.
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 300 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI 300 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC
Confidence 3345565678899999999999998888752 235999999999999999999987764
No 137
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.09 E-value=1e-05 Score=75.39 Aligned_cols=59 Identities=29% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+...+...++.+|||+|||+|..+..+++.. ..++|+|+|+++.+++.+++++...+.
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~ 300 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL 300 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34445666678899999999999999998873 456999999999999999999987664
No 138
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.08 E-value=1.2e-05 Score=71.14 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=48.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhc
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..+.+.+...+++.+||.+||.|.++..+++... +++|+|+|.++.|++.|++++.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 3455566666788999999999999999999853 56999999999999999998864
No 139
>PRK11827 hypothetical protein; Provisional
Probab=98.08 E-value=2.2e-06 Score=57.64 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=38.3
Q ss_pred ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~ 120 (232)
+-+++|+||+|+++|.... ....+.|..|+..|++++|++.++.+
T Consensus 4 ~LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~d 48 (60)
T PRK11827 4 RLLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLET 48 (60)
T ss_pred HHHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHH
Confidence 4578999999999998654 23579999999999999999999865
No 140
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.08 E-value=1.2e-05 Score=74.81 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=49.2
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+...+...++.+|||+|||+|..+..++.. +..++|+++|+|+.|++.+++++++.+.
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~ 287 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL 287 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3334566667889999999999999988887 3345999999999999999999988764
No 141
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=2.5e-06 Score=56.88 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=39.4
Q ss_pred ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~ 120 (232)
+-+++|+||.|.++|.... .++.+.|+.|+..|++.+|++.++.+
T Consensus 4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~ 48 (60)
T COG2835 4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPD 48 (60)
T ss_pred hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCch
Confidence 5679999999999998775 35689999999999999999999854
No 142
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.07 E-value=1.2e-05 Score=74.81 Aligned_cols=60 Identities=28% Similarity=0.249 Sum_probs=50.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+...+...++.+|||+|||+|..+..+++. +..++|+++|+++.|++.+++++...|.
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~ 302 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL 302 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 34444566677899999999999999999887 3345999999999999999999988764
No 143
>PRK04457 spermidine synthase; Provisional
Probab=98.07 E-value=1.5e-05 Score=69.31 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
++.+|||||||+|.++..+++..+..+|+++|+++++++.|++++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~ 113 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP 113 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC
Confidence 468999999999999999998877679999999999999999998643
No 144
>PLN03075 nicotianamine synthase; Provisional
Probab=98.05 E-value=2.3e-05 Score=69.14 Aligned_cols=47 Identities=6% Similarity=-0.013 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCcChHHH--HHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSR--IFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~--~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
++++|||||||.|.++. .++...++++++|+|++++|++.|++.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~ 171 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS 171 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence 68999999999884433 344456777999999999999999999964
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.04 E-value=1.1e-05 Score=67.16 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=44.5
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
...+||||||.|.++..+|...++..++|+|++...+..|.+++.+.+..|
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N 68 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN 68 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc
Confidence 349999999999999999999998999999999999999999998876644
No 146
>PTZ00146 fibrillarin; Provisional
Probab=98.04 E-value=1.4e-05 Score=70.41 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=38.8
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
+...++.+|||+|||+|.++..+++. +..+.|++||+|+.|++...+.+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 44466889999999999999999998 44569999999997654444443
No 147
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=5.3e-06 Score=77.26 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231 (232)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~ 231 (232)
+..+..+.+++....++.+||+.||||.++..+++... +|+||++++.++.-|+++++.+|..|.+|
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~F 435 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATF 435 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceee
Confidence 34455666677776789999999999999999999877 99999999999999999999999888776
No 148
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.00 E-value=2.5e-05 Score=66.79 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=45.0
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
..+.++|||+|||+|.-+..++.. ..+++|+++|+++.+++.|++++++.+..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~ 119 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD 119 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 345789999999999988888776 44569999999999999999999987653
No 149
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.99 E-value=1.7e-05 Score=61.76 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=42.4
Q ss_pred eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+||+|||.|.++..+++.++.++|+++|+++.+.+.++++++.++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 48999999999999999998866899999999999999999886643
No 150
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.93 E-value=2.8e-05 Score=63.90 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHH
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENM 213 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~m 213 (232)
..++.+|||+|||+|.++..+++.. ..++|+|+|+|+.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 3568899999999999999888874 34589999999964
No 151
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.93 E-value=2.9e-05 Score=69.34 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=43.1
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+++.|||||||||.++.+.++.|+ .+|+|||-|.-+ +.|++-+..++.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia-~~a~~iv~~N~~ 107 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIA-DFARKIVKDNGL 107 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHH-HHHHHHHHhcCc
Confidence 4589999999999999999999997 699999999854 999988887654
No 152
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=5.8e-05 Score=65.43 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
....+.+.....++..|||||+|.|.++..|.+++. +|+++++++.++...++++...++
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n 77 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDN 77 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccc
Confidence 345566666666689999999999999999999998 999999999999999999864433
No 153
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.89 E-value=4.7e-05 Score=59.92 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCCCeEEEEcCCcChHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~-----~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.+...|+|+|||.|+++..++. . ++.+|+|||.++.+++.|.++.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 5578999999999999999999 4 45699999999999999999988755
No 154
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=1.8e-05 Score=62.71 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=43.8
Q ss_pred hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
-....++++++|+|||.|-++..++-.+. ..|+|+|+++++|+.+++++....
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfE 95 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEFE 95 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHhh
Confidence 34446789999999999999966665554 499999999999999999987654
No 155
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=6.8e-05 Score=64.44 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=55.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
..++...+...++.+|||.|.|+|.++.+|+.. |+.++|+.+|+-++.++.|++++...+..+
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d 146 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence 356666777788999999999999999999975 777899999999999999999999876554
No 156
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.83 E-value=0.00011 Score=63.34 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=50.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
..++..++...++.+|||.|.|+|.++..|++. ++.++|+..|+.++.++.|+++++..+..
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~ 91 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD 91 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC
Confidence 456677788888999999999999999999987 77789999999999999999999988764
No 157
>PRK00811 spermidine synthase; Provisional
Probab=97.83 E-value=5.5e-05 Score=66.49 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+++|||||||+|..++.+.+.....+|++||+++.|++.|++++..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~ 122 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE 122 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH
Confidence 47899999999999999998874335999999999999999999864
No 158
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.80 E-value=6.3e-05 Score=53.32 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=35.0
Q ss_pred eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
++||+|||.|.++..+... ...+++++|+++.++..+++..
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 41 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAA 41 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHH
Confidence 4899999999999999883 3359999999999999998543
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.75 E-value=9.3e-05 Score=63.10 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=48.3
Q ss_pred hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.......+||||||.|.++..+|+..++..++|||+....+..|.+++.+.++
T Consensus 43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l 97 (227)
T COG0220 43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97 (227)
T ss_pred HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC
Confidence 3444224689999999999999999999999999999999999999999998775
No 160
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.75 E-value=5.6e-05 Score=67.96 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=36.1
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
++.+|||+|||-|.-+.-+...+. ..++|+|+|...|+.|++|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~ 106 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYK 106 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHH
Confidence 578999999999987777777655 499999999999999999994
No 161
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.68 E-value=0.00023 Score=62.94 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHH-----hcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-------CCCCeEEEEe
Q 026825 141 FMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALD 208 (232)
Q Consensus 141 ~~s~~ye~~wr~~f~-----~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-------g~~~~VvGvD 208 (232)
.+...||........ .+.|+.|......+..++...++.+|||-+||+|.|+..+.+. ....+++|+|
T Consensus 5 ~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~e 84 (311)
T PF02384_consen 5 ILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIE 84 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeec
Confidence 445666655444311 1358889988889999888777789999999999999888773 2334999999
Q ss_pred CCHHHHHHHHHHhhc
Q 026825 209 YSENMLKQCYEFVQQ 223 (232)
Q Consensus 209 ~S~~ml~~A~~~~~~ 223 (232)
+++.++..|+-++.-
T Consensus 85 i~~~~~~la~~nl~l 99 (311)
T PF02384_consen 85 IDPEAVALAKLNLLL 99 (311)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhhhh
Confidence 999999999887643
No 162
>PLN02476 O-methyltransferase
Probab=97.67 E-value=0.00023 Score=62.43 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=46.4
Q ss_pred CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 174 ~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
...+.++|||||+|+|..+..++.. +.+++|+.+|.++++++.|++++++.|..
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~ 169 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS 169 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3345789999999999999999886 33568999999999999999999988754
No 163
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.63 E-value=0.00019 Score=62.55 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
.+++||+||||+|.++..+.+.....+|+++|+++++++.|++++...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence 456999999999999999888764458999999999999999987643
No 164
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.62 E-value=0.00011 Score=67.24 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+.+|||++||+|.++..++......+|+++|+++.+++.++++++.++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 4689999999999999998764334899999999999999999987654
No 165
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.61 E-value=2.7e-05 Score=53.91 Aligned_cols=47 Identities=30% Similarity=0.565 Sum_probs=32.7
Q ss_pred ccCCcccCCCCCCCcccccC-------------------CCccccccCCCceECCCCCcccccCCC
Q 026825 67 TSKNVLACPICYKPLTWIGD-------------------SSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~-------------------~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
..+++|+||.|.+||.+... +......+..+.+.|++|++.|++.+|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 56799999999999911100 001113567889999999999998875
No 166
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.61 E-value=8.3e-05 Score=62.22 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=43.2
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+..++.....+.+|+||||||..-.+..-. +...|+++|+++.|-+.|.+.+.+...
T Consensus 68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~ 124 (252)
T KOG4300|consen 68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKP 124 (252)
T ss_pred hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccC
Confidence 334555555667899999999876665432 223999999999999999999887643
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.58 E-value=0.00024 Score=58.34 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=45.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~---------VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+.......++..+||--||+|.++.+.+..+.+.. ++|+|+++.+++.|++++...+.
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 3344444445678999999999999999888866545 88999999999999999987664
No 168
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00013 Score=62.30 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..+..+|||||-.|.++..+++......|+|+||++..++.|++.+..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 347899999999999999999995556899999999999999998753
No 169
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.54 E-value=0.00028 Score=61.25 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=50.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.+.+.+...++..|||+|.|.|.++..|.+.+. +|+++|+++.+.+..++++...++
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~~~~ 77 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFASNPN 77 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTTCSS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhhccc
Confidence 45566666666789999999999999999999996 999999999999999998874433
No 170
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.53 E-value=0.0003 Score=58.89 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++..|||+.||.|.|+..+++.+....|+++|+++.+++.+++++..++.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv 150 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV 150 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC
Confidence 48999999999999999999955445999999999999999999987754
No 171
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.52 E-value=0.00025 Score=58.46 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=41.7
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+.++||+-||+|.++..+..+|+ .+|+.||.+...++..+++++..+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~ 90 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL 90 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-
T ss_pred cCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999997 5999999999999999999987764
No 172
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.50 E-value=0.00032 Score=58.92 Aligned_cols=50 Identities=6% Similarity=-0.003 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+.++|||||+++|+-+..+++.- .+++|+.+|+++.+.+.|++.+++.+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~ 95 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL 95 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC
Confidence 46899999999999999999873 357999999999999999999998764
No 173
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.50 E-value=0.00048 Score=58.35 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=49.1
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
+.....++|||||.+.|+-+..++..-+ +++++.+|+++++.+.|++++++.+..+
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~ 111 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD 111 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc
Confidence 3345689999999999999999999855 7899999999999999999999988654
No 174
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.47 E-value=0.00047 Score=56.17 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=39.1
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
...+.+|||+|||+|..+..++......+|+..|..+ .+..++.++..++
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence 3468899999999999999999993335999999999 9999999988765
No 175
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.47 E-value=0.00037 Score=62.30 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=44.5
Q ss_pred CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
....++.|||+|||+|.++.+.+..|. .+|++|+-|+ |.+.|++.++.+ ++.
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N-~~~ 225 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN-NLA 225 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC-Ccc
Confidence 345688999999999999999999987 5999999886 999999998876 444
No 176
>PLN02366 spermidine synthase
Probab=97.45 E-value=0.00034 Score=62.29 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+++||+||||.|..++.+.+.....+|+.||+++.+++.|++++..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~ 137 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD 137 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh
Confidence 47899999999999999999874345899999999999999999865
No 177
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.44 E-value=0.00067 Score=58.98 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=49.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
..+.+..+..++..|||+|-|||.++..+.+.|. +|+++++++.|+....++.+...
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC
Confidence 3444445556789999999999999999999998 99999999999999999987654
No 178
>PRK01581 speE spermidine synthase; Validated
Probab=97.42 E-value=0.00029 Score=63.98 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~ 219 (232)
.+++||++|||+|..++.+.+.....+|++||++++|++.|++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 4679999999999999999887644699999999999999997
No 179
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00069 Score=55.66 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=44.8
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
|.......+||||||+|..+.+++.. +++..++++|+++.+++..++.+..++
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~ 92 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR 92 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC
Confidence 44445789999999999999999888 667799999999999999888877544
No 180
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.34 E-value=0.00096 Score=58.79 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
.+++|||+-|=||.|+..++..|+ .+|+.||.|..+++.|++++..++..
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 378999999999999999888886 48999999999999999999977643
No 181
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.31 E-value=0.00076 Score=61.88 Aligned_cols=69 Identities=23% Similarity=0.173 Sum_probs=53.8
Q ss_pred cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
+|++-.++......+.+. .+++|||+-|=||.|+..++..|+ .+|++||.|...|+.|++++.-++...
T Consensus 199 TGfFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~ 267 (393)
T COG1092 199 TGFFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDG 267 (393)
T ss_pred ceeeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCc
Confidence 344444444333333332 389999999999999999999987 599999999999999999999887643
No 182
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.30 E-value=0.00054 Score=65.18 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=52.1
Q ss_pred cCCCCcHHHHHHHHhhcCCC-------CCCeEEEEcCCcChHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHh
Q 026825 157 GGFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 157 ~g~~~~~~~~~~l~~~l~~~-------~~~~ILDiGCGtG~~~~~la~~g~--------~~~VvGvD~S~~ml~~A~~~~ 221 (232)
+.|+.|....+.+.+.+... ...+|||.|||+|.++..+.+... ...++|+|+++.++..|+.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 34677766666666554221 346999999999999998877632 247999999999999999998
Q ss_pred hccC
Q 026825 222 QQES 225 (232)
Q Consensus 222 ~~~~ 225 (232)
...+
T Consensus 84 ~~~~ 87 (524)
T TIGR02987 84 GEFA 87 (524)
T ss_pred hhcC
Confidence 7655
No 183
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.29 E-value=0.0011 Score=58.03 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=45.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+...++...+.+|||+|+|.|..+..+.+.. .-.+++++|.|+.|++.+++-+.+...
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~ 83 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN 83 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc
Confidence 444445555667899999999998777766652 234899999999999999998776543
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.27 E-value=0.00062 Score=64.59 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
....+||||||.|.++..++...++..++|+|++...+..|.+++...+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l 396 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI 396 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999999999999876654
No 185
>PRK03612 spermidine synthase; Provisional
Probab=97.25 E-value=0.00061 Score=64.86 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
++++|||+|||+|..++.+.+.....+|+++|++++|++.|+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC
Confidence 47899999999999999998875335999999999999999993
No 186
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.21 E-value=0.00032 Score=62.30 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
++..+||+|||-|.-++..-+.|- +.++|+||++..+++|+++..+-
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm 163 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDM 163 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHH
Confidence 478899999999988888878776 49999999999999999998753
No 187
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.00067 Score=60.94 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=48.0
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+.......+|..|||==||||.++..+.-.|. +++|.|++..|++-|+.++...+
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~ 243 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG 243 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC
Confidence 33333446688999999999999999999998 99999999999999999999876
No 188
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.07 E-value=0.0024 Score=55.17 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=46.2
Q ss_pred CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 174 ~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
...+.++|||||+++|.-+..++.. ..+++|+.+|.++...+.|++++.+.|..
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~ 130 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA 130 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence 3345789999999999999988876 44679999999999999999999988753
No 189
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.05 E-value=0.0047 Score=57.79 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCeEEEEcCCcChHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g----~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+..|||||||+|.++....+.+ ...+|++|+-++.++...+++++.++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~ 238 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG 238 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC
Confidence 5789999999999988776665 23599999999999988887766544
No 190
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.05 E-value=0.0031 Score=56.45 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=36.0
Q ss_pred CCeEEEEcCCcChHHH----HHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 178 GGNIIDASCGSGLFSR----IFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~----~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+..|+|+|||+|.-.. .+.+.+....+++||+|.++|+.+.+++.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 6689999999996544 34333333589999999999999999998
No 191
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.04 E-value=0.0026 Score=53.48 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=36.0
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
.+.+.+...++...+|||||.|.....++-. +. .+++||++.+...+.|++..
T Consensus 33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELL 86 (205)
T ss_dssp HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHH
Confidence 3445566667899999999999888777655 44 36999999999888877644
No 192
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0041 Score=51.38 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=51.4
Q ss_pred HHHHHHhhcCC--CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 165 EFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 165 ~~~~l~~~l~~--~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
..+.+..++.. ..+.++||+-+|+|.++.....+|. ..++.||.+..++...+++++..+
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~ 90 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG 90 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC
Confidence 34455556654 5789999999999999999999988 599999999999999999988766
No 193
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.00 E-value=0.0042 Score=55.20 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=49.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
++.+.+.|...+++.++|.=+|.|..+..+.+...+++|+|+|.++.+++.|++++...
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~ 67 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF 67 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence 34555667666789999999999999999998743479999999999999999998753
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.87 E-value=0.0056 Score=49.76 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCCCCCc
Q 026825 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKE 230 (232)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~ 230 (232)
....+.+.+.+....+..|||+|.|||-++..+.++|. +..+++++.|++......++....++++.+
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gd 102 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGD 102 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccc
Confidence 44456677777777788999999999999999999963 468999999999999999999887766543
No 195
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.71 E-value=0.0056 Score=55.20 Aligned_cols=56 Identities=25% Similarity=0.295 Sum_probs=47.8
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.+.+.... |..|||.-+|.|.|+..++..|.. .|+++|+++.+++..++++..++.
T Consensus 181 Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v 236 (341)
T COG2520 181 RVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV 236 (341)
T ss_pred HHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc
Confidence 34444444 899999999999999999999983 399999999999999999987654
No 196
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0033 Score=52.83 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=42.3
Q ss_pred CCCCeEEEEcCCcChHHHHHHHh-CC-CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKS-GL-FSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~-g~-~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.++.++||+|.|+|+++..++.. +. +..++|||+-++.++.+++++.+.-
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i 132 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDI 132 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhc
Confidence 45999999999999999988866 33 2245999999999999999998764
No 197
>PHA01634 hypothetical protein
Probab=96.66 E-value=0.0074 Score=46.93 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
.+++|+|||.+.|.-++++.-+|+ ..|+++++++...+..++.++..++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~nnI~D 78 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYFNICD 78 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhheeee
Confidence 589999999999999999999988 599999999999999999887665443
No 198
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.62 E-value=0.0046 Score=55.72 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~ 211 (232)
.++.++||+||++|.++..+.++|. +|+|||..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh
Confidence 4589999999999999999999998 999999665
No 199
>PRK11524 putative methyltransferase; Provisional
Probab=96.61 E-value=0.0085 Score=52.59 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
....+.+.+... .++..|||--+|+|..+....+.|. +.+|+|++++-.+.|++|+..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 444555555444 3689999999999999999999998 999999999999999999864
No 200
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.61 E-value=0.0042 Score=53.78 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
...++||||+|.|..+..++.... +|++.|.|..|....+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k 135 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK 135 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC
Confidence 467899999999999999999887 999999999997776664
No 201
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0024 Score=54.71 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred CeEEEEcCCcChHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHhhc
Q 026825 179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 179 ~~ILDiGCGtG~~~~~la~~g~~--~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+||+||||.|.....+.+-.++ -.|++.|.|+.+++..+++...
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc
Confidence 48999999999888888887654 6899999999999998887654
No 202
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.57 E-value=0.0046 Score=53.26 Aligned_cols=58 Identities=14% Similarity=0.294 Sum_probs=43.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
++.+...++. +.+|||||||.=-++..+.....+..++|+||+..+++...+.+...+
T Consensus 96 Y~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~ 153 (251)
T PF07091_consen 96 YDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG 153 (251)
T ss_dssp HHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence 3444444333 789999999999999888877666699999999999999999877654
No 203
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.56 E-value=0.0084 Score=49.60 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=42.5
Q ss_pred cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~ 219 (232)
|....+.+.+.... ++..|||.-||+|..+.+..+.|. +.+|+|+++...+.|++
T Consensus 177 P~~l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhhc-cceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 34555666655543 589999999999999999999998 99999999999999975
No 204
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.56 E-value=0.0063 Score=53.90 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=32.9
Q ss_pred CCeEEEEcCCcChHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 178 GGNIIDASCGSGLFSRIFA--KSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la--~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
..++||||+|.-.+-..|. ..+| +++|.|+++..++.|++++.++.++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~L 152 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPNL 152 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhcccc
Confidence 4689999999885533333 3366 9999999999999999999987444
No 205
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.51 E-value=0.0062 Score=45.83 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~ 211 (232)
.+....+|||||+|.+...|...|. .-+|+|.-.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC--Ccccccccc
Confidence 3467899999999999999999999 889999744
No 206
>PRK13699 putative methylase; Provisional
Probab=96.47 E-value=0.014 Score=49.64 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=48.9
Q ss_pred cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
|....+.+.+.... ++..|||--||+|..+....+.|. +.+|+|+++.-.+.|.+++.+
T Consensus 149 P~~l~~~~i~~~s~-~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESFTH-PNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 34555555554443 588999999999999999888888 999999999999999999865
No 207
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.46 E-value=0.0082 Score=51.06 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~ 219 (232)
.+.......+..+|||||.|.|.++..++++.++.+++..|+ +..++.+++
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~ 141 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE 141 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence 334444445567999999999999999999998889999999 888888887
No 208
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.42 E-value=0.011 Score=49.50 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+++.+.+.++.. +.+|||||+|||....++++..+..+-.-.|+++..+..-+..+.+.+.
T Consensus 14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~ 74 (204)
T PF06080_consen 14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL 74 (204)
T ss_pred HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC
Confidence 356677777662 2269999999999999999998877788899999987777776665543
No 209
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.40 E-value=0.015 Score=54.67 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 174 ~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
...++.+|||+++|.|.=+..++... ..+.|++.|+++..++..++++.+.|..+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n 165 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN 165 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe
Confidence 55678999999999998888888873 34699999999999999999999877543
No 210
>PLN02823 spermine synthase
Probab=96.38 E-value=0.013 Score=52.79 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+++||.||.|.|..++.+.+.....+|+.||+++++++.|++.+..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~ 149 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTV 149 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccc
Confidence 46799999999999999888865445899999999999999999864
No 211
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.38 E-value=0.011 Score=54.04 Aligned_cols=48 Identities=27% Similarity=0.224 Sum_probs=41.9
Q ss_pred CCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+-+|||+.||+|..+..++.. |. .+|+++|+++.+++.++++++.++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~N~~ 94 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV-REVFANDINPKAVESIKNNVEYNSV 94 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 358999999999999999887 43 4999999999999999999987653
No 212
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.37 E-value=0.011 Score=50.19 Aligned_cols=66 Identities=24% Similarity=0.214 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHhhcCC-CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 160 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 160 ~~~~~~~~~l~~~l~~-~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+.|+.+...+...... .....|+|.-||.|.....++..++ .|++||+++.-+..|+.+++--|..
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~ 142 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVP 142 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCC
Confidence 4456665555544322 2467899999999999999999999 9999999999999999999877654
No 213
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.018 Score=50.29 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=55.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
..++..+|...++.+|||-|.|+|.++.++++. ++-++++-.|+.+.-.+.|++.+++.+..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~ 156 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG 156 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC
Confidence 456777888888999999999999999999998 66779999999999999999999987743
No 214
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.35 E-value=0.0079 Score=50.16 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCcC----hHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHH
Q 026825 177 LGGNIIDASCGSG----LFSRIFAKS-----GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 177 ~~~~ILDiGCGtG----~~~~~la~~-----g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
+.-+|+..||++| .++..+.+. ++..+|+|.|+|+.+|+.|++=
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 4679999999999 344444551 2235999999999999999863
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.34 E-value=0.0036 Score=50.91 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSEN 212 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ 212 (232)
++.++||+||++|.|+..+.+++ ..++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 46899999999999999999997 3359999999875
No 216
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.32 E-value=0.016 Score=57.14 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCC------------------------------------------CCeEEEEeCCHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGL------------------------------------------FSLVVALDYSENML 214 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~------------------------------------------~~~VvGvD~S~~ml 214 (232)
++..++|.+||+|.+++..+..+. ..+++|+|+++.|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 478999999999999988765310 12699999999999
Q ss_pred HHHHHHhhccCC
Q 026825 215 KQCYEFVQQESN 226 (232)
Q Consensus 215 ~~A~~~~~~~~~ 226 (232)
+.|++++...|.
T Consensus 270 ~~A~~N~~~~g~ 281 (702)
T PRK11783 270 QAARKNARRAGV 281 (702)
T ss_pred HHHHHHHHHcCC
Confidence 999999998775
No 217
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.13 E-value=0.0096 Score=43.88 Aligned_cols=41 Identities=29% Similarity=0.531 Sum_probs=30.7
Q ss_pred EEEEcCCcChHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhh
Q 026825 181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 181 ILDiGCGtG~~~~~la~~g~~-~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+||+|||+|... .+...... ..++|+|+++.|+..++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE 93 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh
Confidence 999999999865 33333221 289999999999999666553
No 218
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.025 Score=51.66 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=49.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--------------------------------C-------eEEE
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------S-------LVVA 206 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--------------------------------~-------~VvG 206 (232)
...|...-.-.++..++|-=||+|.+++..+-.+.+ . .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 344444444455679999999999999998887741 1 2779
Q ss_pred EeCCHHHHHHHHHHhhccCCCC
Q 026825 207 LDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 207 vD~S~~ml~~A~~~~~~~~~~~ 228 (232)
+|+++.|++.|+.++.+.|..+
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d 281 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGD 281 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999887653
No 219
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.86 E-value=0.047 Score=45.08 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=40.4
Q ss_pred eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+++|||+|.|.=+..++=..++.+++.+|....-+...+.-....+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~ 98 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS 98 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC
Confidence 899999999999999988888789999999999888877777766654
No 220
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.85 E-value=0.046 Score=48.23 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=45.5
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHhhccCCCCC
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPK 229 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~g~~--~~VvGvD~S~~ml~~A~~~~~~~~~~~~ 229 (232)
...+.+||||.||.|+.........+. ..|.-.|.|+.-++..++.+++.|..+.
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i 189 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDI 189 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 346789999999999877776666443 5899999999999999999998876554
No 221
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.83 E-value=0.027 Score=47.63 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=52.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+..+..+++. +..+.||||--+++..++-+.+....+++.|++++.++.|.+++.+.++.
T Consensus 7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~ 66 (226)
T COG2384 7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS 66 (226)
T ss_pred HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc
Confidence 4556666665 56699999999999999999998889999999999999999999987765
No 222
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.79 E-value=0.035 Score=49.05 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHhhcCC-CCCCeEEEEcCCcC----hHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHH
Q 026825 158 GFPGPEKEFELMKGYLKP-VLGGNIIDASCGSG----LFSRIFAKSG----LFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 158 g~~~~~~~~~~l~~~l~~-~~~~~ILDiGCGtG----~~~~~la~~g----~~~~VvGvD~S~~ml~~A~~~ 220 (232)
-|+.....++.+...+.. ...-+|+..||+|| .++..+.+.+ .+.+|+|+|+|+.+|+.|++-
T Consensus 95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 355555555555554422 22369999999999 3334444431 135899999999999999875
No 223
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.63 E-value=0.032 Score=47.20 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=38.3
Q ss_pred HhhcCCCCCCeEEEEcCCcChHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g--~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..++....+-.+.|-.||.|+++-.+.-.. .=..|+|.|+++++|+.|++++.-
T Consensus 44 l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 44 LHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 345555567799999999998877654431 113899999999999999999863
No 224
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.54 E-value=0.026 Score=50.26 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=44.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
..+.+.|...+++.+||.--|.|..+..+.+...+++|+|+|.++.+++.|++++...
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~ 67 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF 67 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc
Confidence 3455566677889999999999999999999866689999999999999999988754
No 225
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.50 E-value=0.026 Score=46.84 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=41.5
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
.+.+.|+|.|+|.++...+.... +|++|+.++.-.+.|.+++.-.+..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~ 80 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDV 80 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCc
Confidence 47899999999999998888866 9999999999999999997654443
No 226
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.47 E-value=0.017 Score=48.38 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+...+.|||||-|.++..|+...++..++|++|-...-+.-++++....
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 3567999999999999999999999999999999998888888876544
No 227
>PRK00420 hypothetical protein; Validated
Probab=95.46 E-value=0.011 Score=44.93 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=25.8
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
.-.||+||.||.... .+...|+.||..+....+
T Consensus 23 ~~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~~~ 55 (112)
T PRK00420 23 SKHCPVCGLPLFELK----------DGEVVCPVHGKVYIVKSD 55 (112)
T ss_pred cCCCCCCCCcceecC----------CCceECCCCCCeeeeccH
Confidence 368999999998632 368999999998776544
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.43 E-value=0.082 Score=44.73 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=42.7
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
+.+++|||.|.|.=+..++=..++.+|+-+|....-+...++-..+.+.-+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n 118 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN 118 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC
Confidence 589999999999999998877777799999999988777777776666543
No 229
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.42 E-value=0.084 Score=46.41 Aligned_cols=59 Identities=24% Similarity=0.167 Sum_probs=49.5
Q ss_pred HhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
...|.+.++..|||+.+|.|.-+..++.... .+.|++.|+++.-+...++++.+.|..+
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~ 137 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN 137 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce
Confidence 3456677889999999999988888888843 5799999999999999999999887654
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.058 Score=45.27 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSE 211 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~ 211 (232)
.++..|+|+|+..|.++..+++. +....|+|+|+-+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 45899999999999999999888 4445699999976
No 231
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.036 Score=47.49 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~ 216 (232)
.++..+||+|..||.|+..+.++|+ .+|+|+|...+.|..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~ 117 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHW 117 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCH
Confidence 4689999999999999999999987 599999999876654
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.16 E-value=0.021 Score=47.63 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=45.9
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+...-+...+++|||+|.|+|..+...++.|. ..|+..|+.+..+...+-+++.++
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~ang 126 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANG 126 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhcc
Confidence 33333345689999999999999999999987 599999999988888888877665
No 233
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.16 E-value=0.085 Score=46.48 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=44.2
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.++||-||-|.|..++.+.+.....+++.|||++..++.|++.+....
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~ 124 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS 124 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcc
Confidence 369999999999999999999866699999999999999999998765
No 234
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.16 E-value=0.036 Score=51.41 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=43.9
Q ss_pred CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
..+||||.|||.++....+.|.+ .|++++.=..|.+.|++-..++|-.+
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~Sd 116 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSD 116 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCcc
Confidence 46999999999999999999875 79999999999999999988877544
No 235
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.07 E-value=0.13 Score=48.65 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=68.2
Q ss_pred chhhHHHHHHHHHHHHh-----cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC----CCeEEEEeCC
Q 026825 140 PFMSFIYERGWRQNFVW-----GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYS 210 (232)
Q Consensus 140 ~~~s~~ye~~wr~~f~~-----~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~----~~~VvGvD~S 210 (232)
..+...||...+..... +.|+.|....+.+.+.+.+.+..+|+|-.||+|.++....+... +..++|.|+.
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 46677787666654332 34899999999999988876778999999999988877666631 2579999999
Q ss_pred HHHHHHHHHHhhccCC
Q 026825 211 ENMLKQCYEFVQQESN 226 (232)
Q Consensus 211 ~~ml~~A~~~~~~~~~ 226 (232)
+.+.+.|+.++--++.
T Consensus 224 ~~t~~l~~mN~~lhgi 239 (489)
T COG0286 224 DTTYRLAKMNLILHGI 239 (489)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999876654
No 236
>PRK10742 putative methyltransferase; Provisional
Probab=94.92 E-value=0.1 Score=45.07 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=46.1
Q ss_pred HHHhhcCCCCCC--eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 168 LMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 168 ~l~~~l~~~~~~--~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
.+.+.+...++. +|||+-+|+|..+..++.+|. +|+++|-++.+....++.+...
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHh
Confidence 445555544555 899999999999999999998 8999999999999988888763
No 237
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.87 E-value=0.061 Score=46.34 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
.+++||-||-|.|..++.+.+.....+|+.||+++.+++.|++.+...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~ 123 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEF 123 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhh
Confidence 589999999999999999988864459999999999999999998753
No 238
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.83 E-value=0.047 Score=45.31 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYS 210 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S 210 (232)
.++.+|||+||..|.++....++ ++++.|.|||+=
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 35899999999999999988887 588899999973
No 239
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.74 E-value=0.011 Score=49.88 Aligned_cols=43 Identities=19% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
..+.++||+|+|.|.++..++.... +|++.++|..|..+.+++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc
Confidence 3468999999999999999999887 999999999999988775
No 240
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.54 E-value=0.14 Score=44.88 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=33.3
Q ss_pred CCeEEEEcCCcC----hHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHH
Q 026825 178 GGNIIDASCGSG----LFSRIFAKSG-----LFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 178 ~~~ILDiGCGtG----~~~~~la~~g-----~~~~VvGvD~S~~ml~~A~~ 219 (232)
.-+|+-+||+|| .++..+.+.+ +..+|+|.|+|..+|+.|++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 679999999999 3444444544 24699999999999999985
No 241
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.094 Score=41.99 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.+..+.+++.+...+.++.+|+|.|.|++....++.|. -..+|+++++=.+..++-..-..+
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~g 119 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRAG 119 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHHh
Confidence 44567778888776778999999999999999999984 389999999988888776654443
No 242
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.18 Score=45.87 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
....|.+.++.+|||+.++.|.=+..++....+ ..|+++|.|+.-++..++++++.|..+
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN 209 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 344677888999999999999888888888653 357999999999999999999888664
No 243
>PRK00536 speE spermidine synthase; Provisional
Probab=94.36 E-value=0.1 Score=45.44 Aligned_cols=46 Identities=11% Similarity=-0.019 Sum_probs=41.9
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..+++||=||-|.|..++.+.+... +|+-||+++.+++.|++.+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHH
Confidence 3579999999999999999999864 999999999999999997765
No 244
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=94.29 E-value=0.025 Score=34.23 Aligned_cols=35 Identities=26% Similarity=0.733 Sum_probs=24.0
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
...||.|+..+...++. +. .....++|+.|++.|.
T Consensus 2 ~i~CP~C~~~f~v~~~~-l~---~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK-LP---AGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH-cc---cCCcEEECCCCCcEee
Confidence 36799999977655421 11 2345799999998874
No 245
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.27 E-value=0.066 Score=45.31 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
...+.||.|+|.|+.+..+.-.-. .+|--||+.+..++.|++++..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcc
Confidence 467999999999999986644433 3999999999999999998876
No 246
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.05 E-value=0.039 Score=36.28 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=22.9
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-.||+|+.++...+ ..+.|+.|+..|-.
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyHR 33 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYHR 33 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCcccH
Confidence 47999999998665 48999999998743
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.03 E-value=0.36 Score=42.88 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+......|...+++..||.--|.|..+..+.+... .++++|+|.++.+++.|++++...+
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 34455677778899999999999999999988854 3579999999999999999997643
No 248
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.84 E-value=0.22 Score=43.55 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
...+||--|||.|+++..++.+|. .+.|.|.|--|+-..+=-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fi 97 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFI 97 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHH
Confidence 457999999999999999999999 999999999997655443
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.82 E-value=0.09 Score=49.50 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHhhcCC----CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHH
Q 026825 166 FELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEF 220 (232)
Q Consensus 166 ~~~l~~~l~~----~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGv---D~S~~ml~~A~~~ 220 (232)
++.|.+.++. ..-..+||+|||+|.|+.+|.+++- .++.+ |..+..++.|-++
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc
Confidence 3445555443 2335799999999999999999975 44443 4455566666655
No 250
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=93.61 E-value=0.041 Score=32.73 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=15.9
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
.||.||++|...- ...+ ....+.|+.||.+
T Consensus 2 fC~~CG~~l~~~i---p~gd--~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 2 FCPQCGGPLERRI---PEGD--DRERLVCPACGFI 31 (34)
T ss_dssp B-TTT--B-EEE-----TT---SS-EEEETTTTEE
T ss_pred ccccccChhhhhc---CCCC--CccceECCCCCCE
Confidence 5999999987542 1111 3457899999876
No 251
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.48 E-value=0.31 Score=41.60 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=45.4
Q ss_pred CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 174 ~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
.....+++||||.=||+-+..++.. -.+++|+++|++++..+.+.+..+..+..+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~ 125 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDH 125 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccc
Confidence 3344789999999999888888877 335799999999999999999888776543
No 252
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=93.47 E-value=0.055 Score=33.70 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=19.9
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
+.||.|++.....+ ...+.+.|+.||.+-
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence 47999999653222 245788999998874
No 253
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.47 E-value=0.33 Score=41.31 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=37.9
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
+...++.+||-+|.++|.....+++- +..+.|+||++|+.+.+..-.-+++
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~ 120 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK 120 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc
Confidence 44567899999999999999999888 6678999999999665554444443
No 254
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=93.43 E-value=0.21 Score=42.93 Aligned_cols=42 Identities=24% Similarity=0.439 Sum_probs=38.0
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
...++|||||-|...+.+...+- .+++-+|-|-.|++.|+.-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred CcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhcc
Confidence 56899999999999999999875 4899999999999999875
No 255
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=93.39 E-value=0.23 Score=41.94 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=34.5
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCC-CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeC
Q 026825 138 RMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209 (232)
Q Consensus 138 ~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~-~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~ 209 (232)
++|..-..|+.++++... .+ |..-.+.+.+++...+ ...|-|+|||.+.++..+... . +|...|+
T Consensus 36 ~dP~~F~~YH~Gfr~Qv~--~W--P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDL 101 (219)
T PF05148_consen 36 EDPELFDIYHEGFRQQVK--KW--PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDL 101 (219)
T ss_dssp H-HHHHHHHHHHHHHHHC--TS--SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEES
T ss_pred hCHHHHHHHHHHHHHHHh--cC--CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeec
Confidence 345556688888887652 22 2233455666665433 569999999999999776532 2 4555554
No 256
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=93.35 E-value=0.046 Score=31.86 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=16.6
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
-.||.||++..... .....+|+.|+..+
T Consensus 4 rfC~~CG~~t~~~~---------~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 4 RFCGRCGAPTKPAP---------GGWARRCPSCGHEH 31 (32)
T ss_dssp SB-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred cccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence 46999999887664 24578999998763
No 257
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=93.24 E-value=0.072 Score=35.11 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=24.2
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+.||.|+..+...++ .....+.|+.||..+-.
T Consensus 3 ~~CP~CG~~iev~~~-------~~GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 3 FECPDCGAEIELENP-------ELGELVICDECGAELEV 34 (54)
T ss_pred cCCCCCCCEEecCCC-------ccCCEEeCCCCCCEEEE
Confidence 589999998776542 12347899999998765
No 258
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=93.04 E-value=0.094 Score=30.95 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=24.0
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
++-.|+.|++++.... ..+.+.|..|+..++
T Consensus 2 ~~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 2 NLKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP 32 (33)
T ss_pred CceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence 4568999999877622 247899999999875
No 259
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=92.95 E-value=0.066 Score=41.64 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
+-..-||.||.||.... |-+.||.|+..
T Consensus 26 ML~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~ 53 (131)
T COG1645 26 MLAKHCPKCGTPLFRKD-----------GEVFCPVCGYR 53 (131)
T ss_pred HHHhhCcccCCcceeeC-----------CeEECCCCCce
Confidence 34457999999999743 78999999943
No 260
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=92.70 E-value=0.069 Score=40.58 Aligned_cols=22 Identities=32% Similarity=0.848 Sum_probs=19.1
Q ss_pred CCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 74 CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
||+|+++|... .+.|++|+...
T Consensus 1 CPvCg~~l~vt-------------~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVVT-------------RLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEEE-------------EEEcCCCCCEE
Confidence 99999999865 68999998875
No 261
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.41 E-value=0.41 Score=43.83 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.+-..++|+|.|.|.+++++.-. .+-.|+|||-|....+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~-y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLG-YGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhc-cCceEEEeccchHHHHHHHHH
Confidence 44578999999999999988765 234999999998777666543
No 262
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=92.03 E-value=0.092 Score=31.57 Aligned_cols=34 Identities=18% Similarity=0.689 Sum_probs=22.9
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
.+.||.|+......+.. +. .....++|+.|++.|
T Consensus 2 ~i~Cp~C~~~y~i~d~~-ip---~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK-IP---PKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH-CC---CCCcEEECCCCCCEe
Confidence 36899999976655421 11 123479999999876
No 263
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=91.67 E-value=0.17 Score=31.90 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=23.3
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
..+.||.||..+..... ...++|+.||.....
T Consensus 2 ~~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~~~ 33 (46)
T PRK00398 2 AEYKCARCGREVELDEY---------GTGVRCPYCGYRILF 33 (46)
T ss_pred CEEECCCCCCEEEECCC---------CCceECCCCCCeEEE
Confidence 35789999998776542 127899999986543
No 264
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=91.57 E-value=0.21 Score=32.06 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=23.5
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
.||.||+.|...+. .....+.|+.||..+.....
T Consensus 2 FCp~Cg~~l~~~~~-------~~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEG-------KEKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccC-------CCCCEEECCcCCCeEECCCc
Confidence 59999997765532 01137899999988766543
No 265
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=91.48 E-value=0.1 Score=31.39 Aligned_cols=34 Identities=21% Similarity=0.619 Sum_probs=22.1
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
+.||.|+.......+... .....++|+.|+..+.
T Consensus 3 ~~CP~C~~~~~v~~~~~~----~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLG----ANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcC----CCCCEEECCCCCCEEE
Confidence 689999997665432110 1123689999998753
No 266
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=91.40 E-value=0.11 Score=30.04 Aligned_cols=26 Identities=31% Similarity=0.837 Sum_probs=14.4
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
.||.|++.....+ ...+.|+.|++.+
T Consensus 4 ~Cp~C~se~~y~D----------~~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYED----------GELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-----------SSSEEETTTTEEE
T ss_pred CCCCCCCcceecc----------CCEEeCCcccccC
Confidence 6999999766543 4689999998764
No 267
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=91.32 E-value=0.11 Score=36.05 Aligned_cols=28 Identities=36% Similarity=1.018 Sum_probs=17.5
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+.||.|+.+|.+.+ +.++|..|+..|..
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~ 29 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK 29 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence 57999999988775 46788888776654
No 268
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=0.1 Score=42.16 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=25.0
Q ss_pred CCcccCCCCCCCcccccCCCc------cccccCCCceECCCCCccc
Q 026825 69 KNVLACPICYKPLTWIGDSSL------SIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~------~~~~~~~~~l~C~~C~~~y 108 (232)
.+.-+||.|+++|.......+ .+-......++|++||+.|
T Consensus 95 ~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 95 PEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred cccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 357799999998765432110 0112223467899999995
No 269
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=91.08 E-value=0.18 Score=36.38 Aligned_cols=32 Identities=22% Similarity=0.564 Sum_probs=24.2
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+...||.|+.+-... +..+++.|..|+..|..
T Consensus 34 ~~~~Cp~C~~~~VkR---------~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRTTVKR---------IATGIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCcceee---------eccCeEEcCCCCCeecc
Confidence 568999999973222 34589999999998754
No 270
>PF14353 CpXC: CpXC protein
Probab=91.06 E-value=0.12 Score=39.83 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=24.3
Q ss_pred ccCCCCCCCcccccCCCcccc-------ccCC---CceECCCCCcccccCC
Q 026825 72 LACPICYKPLTWIGDSSLSIE-------SAAG---SSLQCNTCKKTYSGVG 112 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~-------~~~~---~~l~C~~C~~~y~~~~ 112 (232)
+.||.|++++...-...++.. .+-. ..+.|++||..+...-
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~ 52 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEY 52 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCC
Confidence 679999996544332222211 1111 2579999999976643
No 271
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=0.13 Score=39.01 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=23.4
Q ss_pred cCCCceECCCCCcccccCCCcccccc
Q 026825 94 AAGSSLQCNTCKKTYSGVGTHFDMTA 119 (232)
Q Consensus 94 ~~~~~l~C~~C~~~y~~~~g~~d~~~ 119 (232)
+..+.+.|++||+.|++.+|+++.+.
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL 119 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLL 119 (124)
T ss_pred hccceEecCCCCcEeecccCCccccc
Confidence 46789999999999999999999874
No 272
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=90.87 E-value=0.19 Score=32.55 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=20.5
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
..-.||.|++.+... ..+.+.|..||..+
T Consensus 19 ~~~fCP~Cg~~~m~~----------~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 19 KNKFCPRCGSGFMAE----------HLDRWHCGKCGYTE 47 (50)
T ss_pred ccCcCcCCCcchhec----------cCCcEECCCcCCEE
Confidence 344899999963222 13689999999775
No 273
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=90.81 E-value=0.13 Score=30.74 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=20.7
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
..||.|++-|...++ ......|++|+..+++.
T Consensus 2 ~FCp~C~nlL~p~~~--------~~~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 2 RFCPECGNLLYPKED--------KEKRVACRTCGYEEPIS 33 (35)
T ss_dssp -BETTTTSBEEEEEE--------TTTTEEESSSS-EEE-S
T ss_pred eeCCCCCccceEcCC--------CccCcCCCCCCCccCCC
Confidence 469999998876553 12222899999887654
No 274
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.81 E-value=0.16 Score=28.26 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=17.7
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
.||.|+..... ....|+.||..|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999986543 3568999998764
No 275
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.78 E-value=0.29 Score=43.49 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=41.8
Q ss_pred CCeEEEEcCCcChHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~-~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+..|+|+-+|.|+|+. .+...|+ +.|+++|.++..++..++.+..++
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~ 242 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANN 242 (351)
T ss_pred cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcc
Confidence 5899999999999999 7777777 599999999999999999988654
No 276
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.74 E-value=0.35 Score=41.57 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=36.5
Q ss_pred CCeEEEEcCCcChHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~--------~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
+-.|+|+|.|+|.++.-+.+.-. ..+++-||+|+.+.+.-++++...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 46999999999998887766522 248999999999999999998763
No 277
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=90.52 E-value=0.18 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=22.9
Q ss_pred ccCCCCCCCc-ccccCCCccccccCCCceECCCCCcccc
Q 026825 72 LACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 72 l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
..||.|++.- .....+..+.++.+.-.+.|.+|++.+.
T Consensus 1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~ 39 (40)
T smart00440 1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWR 39 (40)
T ss_pred CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeC
Confidence 3699999842 2222223333444445789999998753
No 278
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.06 E-value=0.91 Score=38.24 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=43.3
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
++..++.+||=+|+.+|.....+++--..+.++||++|+.+.+..-..+.+.+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~N 125 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPN 125 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCC
Confidence 455779999999999999888888885467999999999987766655555444
No 279
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.96 E-value=0.18 Score=35.56 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=25.2
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~ 112 (232)
.+.||+|+-.|.....+.+ .+=.|+.|+-++....
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrG 35 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRG 35 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecch
Confidence 3789999998776543222 2458999999988754
No 280
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=89.77 E-value=0.11 Score=31.70 Aligned_cols=37 Identities=16% Similarity=0.403 Sum_probs=19.6
Q ss_pred ccCCCCCCCc-ccccCCCccccccCCCceECCCCCccc
Q 026825 72 LACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 72 l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
+.||.|++.- .....+....++.+.-.+.|.+|++.|
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 3699999942 222222333333444578999999865
No 281
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=89.70 E-value=0.2 Score=30.11 Aligned_cols=27 Identities=19% Similarity=0.546 Sum_probs=20.8
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
...|++|++.+.... .+.+.|..||+.
T Consensus 8 ~~~C~~C~~~~~~~~----------dG~~yC~~cG~~ 34 (36)
T PF11781_consen 8 NEPCPVCGSRWFYSD----------DGFYYCDRCGHQ 34 (36)
T ss_pred CCcCCCCCCeEeEcc----------CCEEEhhhCceE
Confidence 356999999855443 488999999875
No 282
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=89.55 E-value=0.28 Score=30.41 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=20.2
Q ss_pred CCcccCCCCCCCcccccCCCccccccCCCceECCCCC
Q 026825 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~ 105 (232)
+-.-.||.|+.||.... .+...|..|+
T Consensus 15 ML~~~Cp~C~~PL~~~k----------~g~~~Cv~C~ 41 (41)
T PF06677_consen 15 MLDEHCPDCGTPLMRDK----------DGKIYCVSCG 41 (41)
T ss_pred HhcCccCCCCCeeEEec----------CCCEECCCCC
Confidence 34457999999998742 3568899985
No 283
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.47 E-value=0.53 Score=40.43 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
++-++||||.|.-.+--.+--+ |+ +.+|.|+++..++.|+..+.++.++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~l 128 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPGL 128 (292)
T ss_pred CceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcch
Confidence 4568999998876443333333 66 9999999999999999999887554
No 284
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=89.44 E-value=0.28 Score=43.11 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
+..+||+|||.|..+..- +...++|.|++...+..|++.-
T Consensus 46 gsv~~d~gCGngky~~~~----p~~~~ig~D~c~~l~~~ak~~~ 85 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN----PLCLIIGCDLCTGLLGGAKRSG 85 (293)
T ss_pred cceeeecccCCcccCcCC----CcceeeecchhhhhccccccCC
Confidence 789999999999664321 4458999999999988887653
No 285
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=89.41 E-value=0.19 Score=35.15 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=31.3
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECC--CCCcccccCCCccccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMT 118 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~--~C~~~y~~~~g~~d~~ 118 (232)
+.||.||+......- ....+...+.+..|. +||+.|.....+...+
T Consensus 2 m~CP~Cg~~a~irtS-r~~s~~~~~~Y~qC~N~eCg~tF~t~es~s~ti 49 (72)
T PRK09678 2 FHCPLCQHAAHARTS-RYITDTTKERYHQCQNVNCSATFITYESVQRYI 49 (72)
T ss_pred ccCCCCCCccEEEEC-hhcChhhheeeeecCCCCCCCEEEEEEEEEEEE
Confidence 689999996633322 122233566789999 9999998866665555
No 286
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=88.65 E-value=0.55 Score=42.88 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=41.3
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.++..++|+|||.|...++++.... ..++|+|.++..+.++.......+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~-~~~~Gl~~n~~e~~~~~~~~~~~~ 157 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKK-AGVVGLDNNAYEAFRANELAKKAY 157 (364)
T ss_pred cccccccccCcCcCchhHHHHHhcc-CCccCCCcCHHHHHHHHHHHHHHH
Confidence 3466899999999999999999864 499999999999999888766544
No 287
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=88.61 E-value=0.3 Score=38.72 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=24.7
Q ss_pred CcccCCCCCCCcccccCCCc------cccccCCCceECCCCCcccc
Q 026825 70 NVLACPICYKPLTWIGDSSL------SIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~------~~~~~~~~~l~C~~C~~~y~ 109 (232)
..-+||.|.++|....-..+ .+.......++|+.||+.|=
T Consensus 90 ~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 90 IFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW 135 (147)
T ss_pred CCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence 36799999997754432111 11111234789999999963
No 288
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.23 E-value=2.4 Score=36.72 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
..++..|||.=+|+|..+......+. ..+|+|+++.-++.+.+++...-
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhhc
Confidence 45689999999999999999888888 99999999999999999988643
No 289
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=88.22 E-value=0.35 Score=38.84 Aligned_cols=38 Identities=26% Similarity=0.535 Sum_probs=22.9
Q ss_pred ccCCCCCCCcccccCC-C-ccccccCCCceECCCCCccccc
Q 026825 72 LACPICYKPLTWIGDS-S-LSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~-~-~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+.||-|+++....-+. . .....+.+ ..+|++||..|..
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~-~~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRR-RRECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceee-eeeccccCCcceE
Confidence 4699999976222111 1 11223333 3899999999865
No 290
>PRK10220 hypothetical protein; Provisional
Probab=88.08 E-value=0.53 Score=35.37 Aligned_cols=33 Identities=18% Similarity=0.549 Sum_probs=25.6
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~ 112 (232)
++-.||.|++...-.. ...+.|+.|++.|....
T Consensus 2 ~lP~CP~C~seytY~d----------~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 2 SLPHCPKCNSEYTYED----------NGMYICPECAHEWNDAE 34 (111)
T ss_pred CCCcCCCCCCcceEcC----------CCeEECCcccCcCCccc
Confidence 4568999999776543 35799999999997654
No 291
>PHA00626 hypothetical protein
Probab=87.73 E-value=0.51 Score=31.15 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=22.3
Q ss_pred ccCCCCCCC-cccccCCCccccccCCCceECCCCCccccc
Q 026825 72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 72 l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+.||.||+. ....+- .. ..+..+.|+.||..|..
T Consensus 1 m~CP~CGS~~Ivrcg~--cr---~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT--MR---GWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCCceeeeece--ec---ccCcceEcCCCCCeech
Confidence 369999994 443321 10 12467899999998765
No 292
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=87.57 E-value=0.3 Score=27.63 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=7.2
Q ss_pred cCCCCCCCccccc
Q 026825 73 ACPICYKPLTWIG 85 (232)
Q Consensus 73 ~CPiC~~~l~~~~ 85 (232)
.||+|+++|...+
T Consensus 1 ~CP~C~s~l~~~~ 13 (28)
T PF03119_consen 1 TCPVCGSKLVREE 13 (28)
T ss_dssp B-TTT--BEEE-C
T ss_pred CcCCCCCEeEcCC
Confidence 4999999998654
No 293
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=87.31 E-value=0.47 Score=35.58 Aligned_cols=32 Identities=25% Similarity=0.645 Sum_probs=24.7
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~ 112 (232)
+-.||.|++...-.. ...+.|+.|++.+....
T Consensus 2 lp~CP~C~seytY~d----------g~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 2 LPPCPKCNSEYTYHD----------GTQLICPSCLYEWNENE 33 (109)
T ss_pred CCcCCcCCCcceEec----------CCeeECccccccccccc
Confidence 357999999776543 35799999999997654
No 294
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=87.23 E-value=0.31 Score=40.34 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=22.5
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-.+.||.|++.-..++ +--.....-.++|.+||.+++.
T Consensus 5 iy~~Cp~Cg~eev~hE---Vik~~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 5 IYIECPSCGSEEVSHE---VIKERGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEEECCCCCcchhhHH---HHHhcCCceEEEccCCCcEeec
Confidence 4688999995222111 0000112247899999999965
No 295
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.21 E-value=1.3 Score=39.84 Aligned_cols=47 Identities=28% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 175 PVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 175 ~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+.+.++|-+|+| .|..+...++. |. ++|+.+|++++-|+.|++ +..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga 215 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA 215 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC
Confidence 3568999999999 46666666666 55 699999999999999999 554
No 296
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=87.20 E-value=0.33 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=15.8
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
.||.||..+.. +...|+.||..
T Consensus 1 ~Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-------------cCcchhhhCCc
Confidence 48999997753 24569999864
No 297
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.17 E-value=0.55 Score=43.57 Aligned_cols=56 Identities=27% Similarity=0.276 Sum_probs=47.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
+.+...++ ++..|-|+-||.|-++..++..+. .|++-|+.++|++..+.+++.+..
T Consensus 241 erlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 241 ERLSGLFK--PGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred HHHhhccC--CcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhcccccc
Confidence 34444444 488999999999999999999997 999999999999999999886554
No 298
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=86.89 E-value=0.33 Score=38.47 Aligned_cols=41 Identities=17% Similarity=0.477 Sum_probs=26.5
Q ss_pred ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
.+..-..+.||.|+......+. ..... +.+.+.|+.||..-
T Consensus 93 ~e~~~~~Y~Cp~C~~~y~~~ea--~~~~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 93 DETNNAYYKCPNCQSKYTFLEA--NQLLD-MDGTFTCPRCGEEL 133 (147)
T ss_pred cccCCcEEECcCCCCEeeHHHH--HHhcC-CCCcEECCCCCCEE
Confidence 3344578999999986655432 11111 24569999998874
No 299
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=86.67 E-value=1.7 Score=42.27 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSE 211 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~ 211 (232)
.+...|||+||..|.++....+. +.++.|+|||+-+
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 34789999999999999888877 4456999999865
No 300
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.63 E-value=2.2 Score=38.63 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=38.3
Q ss_pred CCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 174 KPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 174 ~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
...++.+|+-+|+| .|..+.++++. |. +|+++|.|++-++.|++.-+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGAd 212 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGAD 212 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCCc
Confidence 34568999999998 33677777774 75 999999999999999987443
No 301
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=86.56 E-value=0.42 Score=35.20 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=28.2
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d 116 (232)
++.||.||+-|...++ .. -..+.|+.|.-.+++...+-.
T Consensus 1 m~FCP~Cgn~Live~g------~~-~~rf~C~tCpY~~~I~~ei~~ 39 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESG------ES-CNRFSCRTCPYVFPISREISS 39 (105)
T ss_pred CcccCCCCCEEEEecC------Ce-EeeEEcCCCCceeeEeeeeec
Confidence 4689999998876543 11 257899999999888754433
No 302
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=86.55 E-value=1.3 Score=39.91 Aligned_cols=43 Identities=7% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
....+|+|.|.|..+..+....+ +|-|+++...-+-.++..+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~ 220 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA 220 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc
Confidence 47899999999999999999776 89999999999999998885
No 303
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=86.45 E-value=1.4 Score=38.63 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=33.1
Q ss_pred hhhhhcc-CchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCC-CCCCeEEEEcCCcChHHH
Q 026825 132 PATEFFR-MPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSR 193 (232)
Q Consensus 132 ~~~~~~~-~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~-~~~~~ILDiGCGtG~~~~ 193 (232)
.+..+|. +|..-..|+.+++..... ++ ..-++.+.+.+.. .....|-|+|||.+.++.
T Consensus 137 ~A~~lfkedp~afdlYH~gfr~QV~k--WP--~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 137 EAFDLFKEDPTAFDLYHAGFRSQVKK--WP--ENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHh--CC--CChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence 3333443 444555787777765521 22 2223334444432 346789999999998874
No 304
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.34 E-value=2.1 Score=38.61 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCC-cChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 176 VLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 176 ~~~~~ILDiGCG-tG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
.++++++-+||| .|.++..+++...-.+|+.+|.++.-++.|++.....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~ 216 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD 216 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence 345599999999 5777777777743369999999999999999976544
No 305
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=86.21 E-value=0.81 Score=39.43 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=41.3
Q ss_pred hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
......+.+|||...|-|+.++...++|+ .+|+-++.+++.|+.|+-+
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lN 176 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLN 176 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccC
Confidence 34455689999999999999999999997 5999999999998887644
No 306
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=6.8 Score=35.76 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=40.5
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~g--------~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
+....+-.++|+|.|.|.++.-+.+.. ...++.-|++|++..+.=++.++..+
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 344346689999999998776555542 13589999999999998888888764
No 307
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=85.36 E-value=0.52 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=20.2
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
.+.||.||..+..... .. ......|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~--~~----~~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQK--IS----DDPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEe--cC----CCCCCCCCCCCC
Confidence 4789999996654321 11 135678999997
No 308
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=85.15 E-value=0.33 Score=39.83 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=26.4
Q ss_pred cccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
+.+..-..+.||.|+....+.+. ....+.|+.||..
T Consensus 110 ~~e~~~~~Y~Cp~C~~rytf~eA--------~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 110 EEEENNMFFFCPNCHIRFTFDEA--------MEYGFRCPQCGEM 145 (178)
T ss_pred hhccCCCEEECCCCCcEEeHHHH--------hhcCCcCCCCCCC
Confidence 34455678999999987765542 2357999999876
No 309
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.80 E-value=3 Score=37.74 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEcCCc-ChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 174 ~~~~~~~ILDiGCGt-G~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
...++.+||.+|+|. |..+..+++.....+|+++|.++++++.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 334578999999987 88888888873323699999999999999886
No 310
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=84.61 E-value=0.83 Score=40.13 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 214 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml 214 (232)
.+++|||+|||.|.-...+...|. ..++..|++...+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 488999999999988888888874 3888888888766
No 311
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=84.45 E-value=0.33 Score=39.04 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=26.0
Q ss_pred ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
.+..-..+.||.|+....+.+. ....+.|+.||..
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~eA--------~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNEA--------MELNFTCPRCGAM 137 (158)
T ss_pred hccCCCeEECCCCCcEeeHHHH--------HHcCCcCCCCCCE
Confidence 4455678999999987766543 2347999999877
No 312
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.42 E-value=4.1 Score=37.47 Aligned_cols=53 Identities=6% Similarity=-0.142 Sum_probs=40.0
Q ss_pred HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..+.|+..++.+||-|..|....+.++...-. +|++||+|+..+...+=+++.
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~--~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAGPK--RIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcCCc--eEEEEeCCHHHHHHHHHHHHH
Confidence 34456667789999999876677666555444 999999999998877766554
No 313
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=84.38 E-value=3.2 Score=36.30 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCc--ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 177 LGGNIIDASCGS--GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 177 ~~~~ILDiGCGt--G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
.-...||||||- -.....+++. .++++|+=||.++-.+..++..+....+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~ 120 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR 120 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC
Confidence 456899999993 3445555554 6678999999999999999999887654
No 314
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=84.29 E-value=0.61 Score=43.18 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=29.4
Q ss_pred ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
.....-.||.||..+...+. +.++|+.||..+.....
T Consensus 346 ~~~~~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~~ 382 (421)
T COG1571 346 YERVNPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETLI 382 (421)
T ss_pred eEEcCCCCCccCCchhhcCC----------CCcccccccccCCcccc
Confidence 45566799999999887763 48999999999877543
No 315
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=83.95 E-value=0.73 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.495 Sum_probs=23.1
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
-.||.||..+.-.+ +.=..||.||..|...
T Consensus 10 R~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence 57999999876332 2346899999999876
No 316
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=83.68 E-value=0.74 Score=30.22 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred cccCCCCCCC--cccccCCCccccccCCCceECCCCCcccccC
Q 026825 71 VLACPICYKP--LTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 71 ~l~CPiC~~~--l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
-+.||+||+. +....| ..+..--+.|+.|.+...+.
T Consensus 4 Wi~CP~CgnKTR~kir~D-----T~LkNfPlyCpKCK~EtlI~ 41 (55)
T PF14205_consen 4 WILCPICGNKTRLKIRED-----TVLKNFPLYCPKCKQETLID 41 (55)
T ss_pred EEECCCCCCccceeeecC-----ceeccccccCCCCCceEEEE
Confidence 4689999983 332222 12222358999998886653
No 317
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=83.66 E-value=0.68 Score=28.40 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=21.9
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~ 112 (232)
.||.|+..|..... + .-....|++|+-.+....
T Consensus 1 ~CP~C~~~l~~~~~-----~--~~~id~C~~C~G~W~d~~ 33 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-----G--DVEIDVCPSCGGIWFDAG 33 (41)
T ss_pred CcCCCCcccceEEE-----C--CEEEEECCCCCeEEccHH
Confidence 39999997664431 1 113568999988876543
No 318
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=83.59 E-value=0.96 Score=28.43 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=21.6
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
.+.|..||..+... ....++|+.||+--..
T Consensus 2 ~Y~C~~Cg~~~~~~----------~~~~irC~~CG~rIly 31 (44)
T smart00659 2 IYICGECGRENEIK----------SKDVVRCRECGYRILY 31 (44)
T ss_pred EEECCCCCCEeecC----------CCCceECCCCCceEEE
Confidence 36899999976643 2357899999887443
No 319
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=83.58 E-value=0.81 Score=40.83 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=21.6
Q ss_pred CcccCCCCCC-CcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+.-.||+||+ |....- ...+.....+++|.-|+..+..
T Consensus 186 ~~~~CPvCGs~P~~s~v---~~~~~~G~RyL~CslC~teW~~ 224 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVV---QIGTTQGLRYLHCNLCESEWHV 224 (309)
T ss_pred CCCCCCCCCCcchhhee---eccCCCCceEEEcCCCCCcccc
Confidence 5678999999 432110 0011112357788888777654
No 320
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=83.27 E-value=1.2 Score=28.95 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=21.4
Q ss_pred cccCCCCCCCcc-cccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+..||.||+.-. .... ..+....+.+.|..|+...+.
T Consensus 1 LkPCPfCGg~~~~~~~~---~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 1 LKPCPFCGGADVYLRRG---FDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCCcceeeEec---cCCCCCEEEEECCCCCCCccc
Confidence 467999999432 2210 111112345689999988654
No 321
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=83.15 E-value=3.3 Score=38.05 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=37.9
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
-.++|-+|-|.|..++++.+.-...+|+-||++++|++.+++.
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhh
Confidence 5789999999999999998884345999999999999999944
No 322
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.71 E-value=3.5 Score=35.88 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhC-----CCCeEEEEeCCH
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSE 211 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g-----~~~~VvGvD~S~ 211 (232)
.++..++|+|||.|.++.+++... ....++-||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 346799999999999999999885 345889999855
No 323
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=82.44 E-value=0.38 Score=30.55 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=24.2
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCC--CCcccccCC
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVG 112 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~--C~~~y~~~~ 112 (232)
.||.||++.....- ..-...+.+.+.+|.+ ||+.|....
T Consensus 1 ~CP~Cg~~a~ir~S-~~~s~~~~~~Y~qC~N~~Cg~tfv~~~ 41 (47)
T PF04606_consen 1 RCPHCGSKARIRTS-RQLSPLTRELYCQCTNPECGHTFVANL 41 (47)
T ss_pred CcCCCCCeeEEEEc-hhhCcceEEEEEEECCCcCCCEEEEEE
Confidence 49999996543321 1122333445789999 999886543
No 324
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=82.43 E-value=0.7 Score=25.51 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=16.3
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
..||.||..+. .+...|+.||..
T Consensus 3 ~~Cp~Cg~~~~-------------~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEID-------------PDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCC-------------cccccChhhCCC
Confidence 46999999543 235689999864
No 325
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=82.07 E-value=3.3 Score=35.51 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=27.7
Q ss_pred CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~ 219 (232)
.+|||.-+|-|.-+..++..|. +|++++-|+-+....+.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~d 115 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKD 115 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHH
T ss_pred CEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHH
Confidence 4899999999999999998887 99999999987555543
No 326
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=81.99 E-value=1 Score=40.17 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=21.9
Q ss_pred CCcccCCCCCC-CcccccCCCccccccCCCceECCCCCccccc
Q 026825 69 KNVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 69 ~~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
.+.-.||+||+ |....-. .....-...+++|.-|+..|..
T Consensus 182 ~~~~~CPvCGs~P~~s~~~--~~~~~~G~RyL~CslC~teW~~ 222 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVR--QGGKETGLRYLSCSLCATEWHY 222 (305)
T ss_pred CCCCcCCCCCChhhhhhhc--ccCCCCCceEEEcCCCCCcccc
Confidence 35668999999 4321100 0000112357888888777654
No 327
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=81.95 E-value=0.98 Score=30.88 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=30.9
Q ss_pred cccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCc
Q 026825 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (232)
Q Consensus 64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~ 114 (232)
+.++..-...||-|++....-++ ....+.|..||..-..+.|-
T Consensus 12 ~p~s~Fl~VkCpdC~N~q~vFsh--------ast~V~C~~CG~~l~~PTGG 54 (67)
T COG2051 12 EPRSRFLRVKCPDCGNEQVVFSH--------ASTVVTCLICGTTLAEPTGG 54 (67)
T ss_pred CCCceEEEEECCCCCCEEEEecc--------CceEEEecccccEEEecCCC
Confidence 44555566789999996655443 44678999999997776543
No 328
>PHA02998 RNA polymerase subunit; Provisional
Probab=81.60 E-value=1 Score=36.86 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=27.9
Q ss_pred CcccCCCCCCC-cccccCCCccccccCCCceECCCCCcccccC
Q 026825 70 NVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 70 ~~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
-...||.|++. ...-..|..+.++.+...+.|..||..+.-+
T Consensus 142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp 184 (195)
T PHA02998 142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP 184 (195)
T ss_pred cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence 34789999984 2222223444555566788999999987544
No 329
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=81.54 E-value=1.1 Score=30.38 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=21.9
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
-.-.||.||...... .....+.|+.||..+
T Consensus 27 TSq~C~~CG~~~~~~---------~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKR---------RSGRVFTCPNCGFEM 56 (69)
T ss_pred CccCccCcccccccc---------cccceEEcCCCCCEE
Confidence 456799999966541 134689999998873
No 330
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=81.47 E-value=1.3 Score=29.28 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=19.9
Q ss_pred CcccCCCCCCCcccccCC-CccccccCCCceECCCCCc
Q 026825 70 NVLACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~-~~~~~~~~~~~l~C~~C~~ 106 (232)
.+..||-||.+-...... ....+. .-.+.|..||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~~~~~~--~~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEGFDYGM--YYYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccCCCCCC--EEEEEcCCCCC
Confidence 578899998754433210 001000 03578999988
No 331
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=81.38 E-value=0.42 Score=42.12 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=14.2
Q ss_pred cccCCCCCCC-cccccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
.-.||+||++ ....- ...+.-...+++|.-|+..+..
T Consensus 172 ~g~CPvCGs~P~~s~l---~~~~~~G~R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVL---RGGEREGKRYLHCSLCGTEWRF 209 (290)
T ss_dssp -SS-TTT---EEEEEE---E------EEEEEETTT--EEE-
T ss_pred CCcCCCCCCcCceEEE---ecCCCCccEEEEcCCCCCeeee
Confidence 4799999993 22110 0010001257888888877665
No 332
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=81.36 E-value=0.79 Score=38.12 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCcccCCCCCCCcccccCCCcccccc---CCCceECCCCCccccc
Q 026825 69 KNVLACPICYKPLTWIGDSSLSIESA---AGSSLQCNTCKKTYSG 110 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~---~~~~l~C~~C~~~y~~ 110 (232)
...+-||+|++.|..... ..+.+.+ .-....|.+||..+..
T Consensus 12 ~~~~~CPvCg~~l~~~~~-~~~IPyFG~V~i~t~~C~~CgYR~~D 55 (201)
T COG1779 12 ETRIDCPVCGGTLKAHMY-LYDIPYFGEVLISTGVCERCGYRSTD 55 (201)
T ss_pred eeeecCCcccceeeEEEe-eecCCccceEEEEEEEccccCCcccc
Confidence 456889999997665543 2222222 2245799999887655
No 333
>PRK12495 hypothetical protein; Provisional
Probab=81.21 E-value=1.1 Score=37.82 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=26.2
Q ss_pred ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
..+..+.||.||.|+... .+..+|+.|+..+..
T Consensus 38 atmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 38 ATMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVTE 70 (226)
T ss_pred cccchhhcccccCcccCC-----------CCeeECCCCCCcccc
Confidence 456778999999998732 368899999988665
No 334
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=81.19 E-value=1 Score=34.05 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=26.9
Q ss_pred ccccccCCcccCCCCCCCc-ccccCCCccccccCCCceECCCCCcccc
Q 026825 63 NEASTSKNVLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 63 ~~~~~~~~~l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
+++....-.-.||.||++- ..+..+..+-++...-.+.|++|+..+.
T Consensus 66 ~~~~ga~I~~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~ 113 (116)
T KOG2907|consen 66 SSADGAVIKHKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFT 113 (116)
T ss_pred ccccccchhccCcccCCchhhhhhhhcccccCCceEEEEcCccceeee
Confidence 3444455567899999942 2222222233333333689999987653
No 335
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=80.72 E-value=1.3 Score=32.76 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=21.3
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
.||.||+.|...+ +.+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence 6999999886432 47999999987654
No 336
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=80.51 E-value=0.79 Score=33.36 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=22.1
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
..+.||.|+..-.... ..+++.|..|+..+.
T Consensus 34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~A 64 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKFA 64 (90)
T ss_dssp S-BEESSSSSSEEEEE---------ETTEEEETTTTEEEE
T ss_pred CCCcCCCCCCceeEEe---------eeEEeecCCCCCEEe
Confidence 5688999999653321 247899999987754
No 337
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.43 E-value=1.1 Score=33.59 Aligned_cols=25 Identities=32% Similarity=0.857 Sum_probs=19.7
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
+..||+|+..+... .++|++|+..-
T Consensus 6 ~~~cPvcg~~~iVT-------------eL~c~~~etTV 30 (122)
T COG3877 6 INRCPVCGRKLIVT-------------ELKCSNCETTV 30 (122)
T ss_pred CCCCCcccccceeE-------------EEecCCCCceE
Confidence 56899999977654 58999997663
No 338
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=79.42 E-value=1.5 Score=39.07 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=23.5
Q ss_pred cCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+...+.||.|+++-...+ ...+.+.|..||.+...
T Consensus 8 ~~~~~~Cp~Cg~~~iv~d--------~~~Ge~vC~~CG~Vl~e 42 (310)
T PRK00423 8 EEEKLVCPECGSDKLIYD--------YERGEIVCADCGLVIEE 42 (310)
T ss_pred cccCCcCcCCCCCCeeEE--------CCCCeEeecccCCcccc
Confidence 334578999998422221 24678999999987543
No 339
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=79.12 E-value=2.1 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=13.9
Q ss_pred CCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 74 CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
|-.|+.++.-.+ ....+.|++||.
T Consensus 1 C~sC~~~i~~r~---------~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPRE---------QAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcc---------cCceEeCCCCCC
Confidence 455666655332 134678888873
No 340
>PHA02768 hypothetical protein; Provisional
Probab=78.91 E-value=0.57 Score=30.94 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=27.9
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d 116 (232)
-+.||.||..+..... ...+.-+....+.|..|+..|.....+++
T Consensus 5 ~y~C~~CGK~Fs~~~~-L~~H~r~H~k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPICGEIYIKRKS-MITHLRKHNTNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcchhCCeeccHHH-HHHHHHhcCCcccCCcccceecccceeEE
Confidence 3689999997655432 12222222246799999999875554443
No 341
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=78.89 E-value=9.2 Score=27.05 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCCcChHHH--HHHHhCCCCeEEEEeCCH
Q 026825 176 VLGGNIIDASCGSGLFSR--IFAKSGLFSLVVALDYSE 211 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~--~la~~g~~~~VvGvD~S~ 211 (232)
..+++||-+||.+|+-+. ..+..+.+...+||-+..
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 346899999999995433 333336667999987654
No 342
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=78.89 E-value=1.4 Score=36.44 Aligned_cols=27 Identities=33% Similarity=0.687 Sum_probs=22.5
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
+-.|+.|+++|...+ ..+.|++||..-
T Consensus 149 ~A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tE 175 (188)
T COG1096 149 YARCSRCRAPLVKKG-----------NMLKCPNCGNTE 175 (188)
T ss_pred EEEccCCCcceEEcC-----------cEEECCCCCCEE
Confidence 458999999999754 589999999874
No 343
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.74 E-value=1.4 Score=34.07 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=23.3
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
.-.||.||..+.-.+ +.-..|+.||..|...
T Consensus 9 Kr~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLN----------RRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccC----------CCCccCCCcCCccCcc
Confidence 357999999876432 2457999999998664
No 344
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=78.41 E-value=1.7 Score=37.81 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCcChHHHH-HHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 176 VLGGNIIDASCGSGLFSRI-FAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~-la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
.++.++||||||.-.+-.. +.+... +|+..|.++.-++..++-+++++
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~ 103 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEG 103 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-T
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCC
Confidence 3467999999998754333 333344 99999999999999999888763
No 345
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=78.35 E-value=1.2 Score=32.96 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=24.6
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
-.|.||.|++.....-- + .-....+.+.|..||..|.-.
T Consensus 21 k~FtCp~Cghe~vs~ct--v-kk~~~~g~~~Cg~CGls~e~e 59 (104)
T COG4888 21 KTFTCPRCGHEKVSSCT--V-KKTVNIGTAVCGNCGLSFECE 59 (104)
T ss_pred ceEecCccCCeeeeEEE--E-EecCceeEEEcccCcceEEEe
Confidence 57899999995443110 0 001123578999999997653
No 346
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.15 E-value=6 Score=35.35 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
..+.+|.-+|.|.-..+.++++.-. +|..||+++..+..-+-++...
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa--~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA--RIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc--eeEEEeCCHHHHHHHHHHHHHH
Confidence 4578999999987778888888766 9999999999988777666543
No 347
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=78.08 E-value=2 Score=31.84 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=24.9
Q ss_pred ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
+.-.++.||-|++...... ... ......|+.||..+...
T Consensus 17 klpt~f~CP~Cge~~v~v~---~~k---~~~h~~C~~CG~y~~~~ 55 (99)
T PRK14892 17 KLPKIFECPRCGKVSISVK---IKK---NIAIITCGNCGLYTEFE 55 (99)
T ss_pred CCCcEeECCCCCCeEeeee---cCC---CcceEECCCCCCccCEE
Confidence 3447899999996322111 011 24578999999997654
No 348
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=77.97 E-value=6.1 Score=34.74 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=29.1
Q ss_pred CCeEEEEcCCcChHHH-HHHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 178 GGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~-~la~~-g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
+.+|+=||+|.=-++. .+++. +.+..|+++|+++.+++.+++-++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA 167 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 4699999999774444 44443 555589999999999999999877
No 349
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=77.91 E-value=3.4 Score=34.75 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCcChHHHHHHHh----CCCCeEEEEeCCHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSEN 212 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~----g~~~~VvGvD~S~~ 212 (232)
++..|+|+|.-.|.-+..++.. +..++|+|||+...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir 71 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR 71 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc
Confidence 4689999999999777666543 45679999999543
No 350
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=77.61 E-value=5.2 Score=37.25 Aligned_cols=56 Identities=23% Similarity=0.186 Sum_probs=45.1
Q ss_pred cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (232)
Q Consensus 173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~ 228 (232)
|.++++.+|||..+..|.=+.+++.. ...+.|++.|-+.+-++..+.++...|.-+
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n 293 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN 293 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc
Confidence 45678999999999999666666655 223589999999999999999998877544
No 351
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.52 E-value=1.5 Score=36.99 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=10.8
Q ss_pred ceECCCCCcccccC
Q 026825 98 SLQCNTCKKTYSGV 111 (232)
Q Consensus 98 ~l~C~~C~~~y~~~ 111 (232)
...||+||-.....
T Consensus 48 V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 48 VWVCPHCGYAAFEE 61 (214)
T ss_pred EEECCCCCCccccc
Confidence 56999998876653
No 352
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=77.33 E-value=1.7 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
...-.||.||......++ ...+.|..||...
T Consensus 17 rk~~~CPrCG~gvfmA~H---------~dR~~CGkCgyTe 47 (51)
T COG1998 17 RKNRFCPRCGPGVFMADH---------KDRWACGKCGYTE 47 (51)
T ss_pred EccccCCCCCCcchhhhc---------CceeEeccccceE
Confidence 345679999974333321 3479999998763
No 353
>PRK10458 DNA cytosine methylase; Provisional
Probab=77.24 E-value=10 Score=35.89 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHHHHhhcCCCC------CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 164 KEFELMKGYLKPVL------GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 164 ~~~~~l~~~l~~~~------~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
.+...+...++..+ .-+++|+-||.|.+...|...|.. .|.++|+++.+.+.-+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~-~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQ-CVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCE-EEEEEechHHHHHHHHHHc
Confidence 44455555554322 458999999999999999988863 6788999999988888876
No 354
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=76.92 E-value=1.5 Score=39.81 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825 163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216 (232)
Q Consensus 163 ~~~~~~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~ 216 (232)
+.++..+...+. ..+++.|+|--.|||.++...+..|. .|+|.||+-.|+..
T Consensus 193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vra 245 (421)
T KOG2671|consen 193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRA 245 (421)
T ss_pred chhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeec
Confidence 344444444433 46789999999999999999999998 99999999999884
No 355
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=76.83 E-value=0.78 Score=29.86 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=6.4
Q ss_pred cCCCCCCCcccc
Q 026825 73 ACPICYKPLTWI 84 (232)
Q Consensus 73 ~CPiC~~~l~~~ 84 (232)
+||+|+.+|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999988643
No 356
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=76.25 E-value=1.6 Score=26.84 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=10.7
Q ss_pred ceECCCCCcccccC
Q 026825 98 SLQCNTCKKTYSGV 111 (232)
Q Consensus 98 ~l~C~~C~~~y~~~ 111 (232)
.+.|++||..+...
T Consensus 32 ~~~C~~CGE~~~~~ 45 (46)
T TIGR03831 32 ALVCPQCGEEYLDA 45 (46)
T ss_pred ccccccCCCEeeCC
Confidence 46899999887653
No 357
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=76.05 E-value=9.5 Score=30.56 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=28.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCC
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S 210 (232)
.+....... -.+-|||+|=|+|+.-..|.+..++.+|+.+|-.
T Consensus 19 ~~a~~~v~~-~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 19 NWAAAQVAG-LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHhcC-CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 445555544 3589999999999999999999888899999854
No 358
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=75.93 E-value=1.6 Score=26.92 Aligned_cols=31 Identities=19% Similarity=0.497 Sum_probs=20.1
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
.+.|+.||+.+..... .. ......|+.||..
T Consensus 5 ey~C~~Cg~~fe~~~~--~~----~~~~~~CP~Cg~~ 35 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQS--IS----EDDPVPCPECGST 35 (42)
T ss_pred EEEeCCCCCEEEEEEE--cC----CCCCCcCCCCCCC
Confidence 4789999986554321 11 1356789999873
No 359
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=75.88 E-value=2 Score=38.16 Aligned_cols=42 Identities=14% Similarity=0.425 Sum_probs=26.7
Q ss_pred ccCCcccCCCCCCCc-ccccCCCccccccCCCceECCCCCccc
Q 026825 67 TSKNVLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
...+.+.||.|++.- .....+..+.++.+...+.|..|++.|
T Consensus 254 ~~t~~~~C~~C~~~~~~~~q~QtrsaDEpmT~f~~C~~Cg~~w 296 (299)
T TIGR01385 254 AVTDLFTCGKCKQKKCTYYQLQTRSADEPMTTFVTCEECGNRW 296 (299)
T ss_pred CCcccccCCCCCCccceEEEecccCCCCCCeEEEEcCCCCCee
Confidence 445789999999832 111112333444455678999999865
No 360
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=75.86 E-value=3.1 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=18.5
Q ss_pred cccCCCCCCC--cccccCCCccccccCCCceECCCCCc
Q 026825 71 VLACPICYKP--LTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 71 ~l~CPiC~~~--l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
...||.|++. +...+ .-..+.+.|.+|+.
T Consensus 3 ~~pCP~CGG~DrFr~~d-------~~g~G~~~C~~Cg~ 33 (37)
T smart00778 3 HGPCPNCGGSDRFRFDD-------KDGRGTWFCSVCGA 33 (37)
T ss_pred ccCCCCCCCcccccccc-------CCCCcCEEeCCCCC
Confidence 3579999983 33221 11346899999974
No 361
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=75.67 E-value=2.9 Score=26.26 Aligned_cols=27 Identities=26% Similarity=0.762 Sum_probs=17.9
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
+.||.||+.-... +. ....++|..|+.
T Consensus 19 ~~CP~Cg~~~~~~----~~----~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYR----LK----TRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEE----eC----CCCeEECCCCCC
Confidence 7799999952111 00 136899999985
No 362
>PF12773 DZR: Double zinc ribbon
Probab=75.60 E-value=2.2 Score=27.02 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=20.6
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
+...||.||.+|... ......|+.|+...
T Consensus 11 ~~~fC~~CG~~l~~~----------~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPP----------DQSKKICPNCGAEN 39 (50)
T ss_pred cccCChhhcCChhhc----------cCCCCCCcCCcCCC
Confidence 567899999888721 12467899998863
No 363
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=75.09 E-value=5.9 Score=33.53 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
+..+.+.++..+..+++|.=||+|..+..+...+. .|+.-|+.+..+...+..++.
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~--~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK--RVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS--EEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc--ceeeeechHHHHHHHHHHHhc
Confidence 45677777643588999999999999998877666 999999999988877755543
No 364
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=74.89 E-value=7.2 Score=37.28 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 176 VLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 176 ~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.++.+||-+|+| .|..+...++. |. .|+++|.+++-++++++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc
Confidence 468999999999 46666666665 66 899999999999999884
No 365
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=74.87 E-value=9.7 Score=38.02 Aligned_cols=34 Identities=6% Similarity=0.017 Sum_probs=19.9
Q ss_pred eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHH
Q 026825 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENM 213 (232)
Q Consensus 180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~m 213 (232)
.+--+|.||=.....+.+..++.+|+=+|-+...
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~ 518 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTR 518 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEcccccc
Confidence 4445555555666666666655566666655544
No 366
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=74.79 E-value=1.1 Score=32.98 Aligned_cols=40 Identities=18% Similarity=0.446 Sum_probs=26.5
Q ss_pred CcccCCCCCCC-cccccCCCccccccCCCceECCCCCcccc
Q 026825 70 NVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 70 ~~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
-.-.||.|++. ..+..-+..+.++.+...++|-+|++.+.
T Consensus 64 t~~~Cp~Cgh~rayF~qlQtRSADEPmT~FYkC~~C~~~Wr 104 (105)
T KOG2906|consen 64 TEATCPTCGHERAYFMQLQTRSADEPMTTFYKCCKCKHRWR 104 (105)
T ss_pred ccCcCCCCCCCceEEEEeeeccCCCcHhHhhhhhccccccc
Confidence 34689999993 33333334455555667899999988763
No 367
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=74.69 E-value=1.7 Score=32.97 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=24.6
Q ss_pred cccCCCCCCC-cccccCCCccccccCCCceECCCCCcccc
Q 026825 71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 71 ~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
..-||.||+. ......+....+..+...+.|..||..|.
T Consensus 72 ~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~wr 111 (113)
T COG1594 72 KEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRWR 111 (113)
T ss_pred cccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEee
Confidence 5789999983 22211123334444556789999998764
No 368
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=74.65 E-value=1.5 Score=36.19 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=19.7
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
-.+.||.|+......+.............+.|++|+..+
T Consensus 17 l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~ 55 (188)
T PF08996_consen 17 LKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPL 55 (188)
T ss_dssp EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B-
T ss_pred eEeECCCCCCCccccccccCCccccccCcCcCCCCCCcC
Confidence 457899999866655532223334445678999998843
No 369
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=74.64 E-value=1 Score=32.15 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=17.5
Q ss_pred CCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCc
Q 026825 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~ 114 (232)
.-.|.||.|++.-...-. . ......+.+.|..||..|...-..
T Consensus 20 ~~~F~CPfC~~~~sV~v~--i-dkk~~~~~~~C~~Cg~~~~~~i~~ 62 (81)
T PF05129_consen 20 PKVFDCPFCNHEKSVSVK--I-DKKEGIGILSCRVCGESFQTKINP 62 (81)
T ss_dssp SS----TTT--SS-EEEE--E-ETTTTEEEEEESSS--EEEEE--S
T ss_pred CceEcCCcCCCCCeEEEE--E-EccCCEEEEEecCCCCeEEEccCc
Confidence 367999999974221100 0 001123578999999998665333
No 370
>PRK05978 hypothetical protein; Provisional
Probab=74.64 E-value=2.2 Score=33.96 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=23.3
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
-..+||.||+.-.+.+. -+-.-+|+.||.-|...++
T Consensus 32 l~grCP~CG~G~LF~g~--------Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 32 FRGRCPACGEGKLFRAF--------LKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred HcCcCCCCCCCcccccc--------cccCCCccccCCccccCCc
Confidence 45689999994333321 1123489999999876543
No 371
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=74.62 E-value=2.2 Score=36.99 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=26.1
Q ss_pred ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
..+....-.||.||+++.... ......|+.|+..+-
T Consensus 93 ~~w~~~~~fC~~CG~~~~~~~---------~~~~~~C~~c~~~~y 128 (256)
T PRK00241 93 AEFYRSHRFCGYCGHPMHPSK---------TEWAMLCPHCRERYY 128 (256)
T ss_pred HHHhhcCccccccCCCCeecC---------CceeEECCCCCCEEC
Confidence 346667789999999887542 234689999987643
No 372
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=74.32 E-value=4 Score=36.69 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=38.4
Q ss_pred HHHHHhhcCC----CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825 166 FELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216 (232)
Q Consensus 166 ~~~l~~~l~~----~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~ 216 (232)
++.+..+.+. ...-+||--|||.|+++..++..|+ .+.|=++|--|+-.
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLIC 187 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHH
Confidence 3444444443 3356899999999999999999999 88898999988753
No 373
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=74.31 E-value=2.3 Score=26.21 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=13.6
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
..||+|++.-.+. +..+....+.+.|.+|+.
T Consensus 4 ~pCP~CGG~DrFr----i~~d~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 4 GPCPICGGKDRFR----IFDDKDGRGTWICRQCGG 34 (40)
T ss_dssp E--TTTT-TTTEE----EETT----S-EEETTTTB
T ss_pred CCCCCCcCccccc----cCcCcccCCCEECCCCCC
Confidence 4699999832221 111112347899999943
No 374
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=74.10 E-value=2.9 Score=27.98 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=28.1
Q ss_pred ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCc
Q 026825 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~ 114 (232)
+..-...||-|++....-++ ....+.|..||..-..+.|-
T Consensus 7 S~F~~VkCp~C~n~q~vFsh--------a~t~V~C~~Cg~~L~~PtGG 46 (59)
T PRK00415 7 SRFLKVKCPDCGNEQVVFSH--------ASTVVRCLVCGKTLAEPTGG 46 (59)
T ss_pred CeEEEEECCCCCCeEEEEec--------CCcEEECcccCCCcccCCCc
Confidence 34445789999996544332 34678999999998776554
No 375
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=74.04 E-value=2.2 Score=31.02 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=23.2
Q ss_pred CCcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-..+.||.|+.+-.... .-+++.|..|+..+..
T Consensus 34 ~a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG 66 (90)
T PTZ00255 34 HAKYFCPFCGKHAVKRQ---------AVGIWRCKGCKKTVAG 66 (90)
T ss_pred hCCccCCCCCCCceeee---------eeEEEEcCCCCCEEeC
Confidence 35689999998533221 2378999999988643
No 376
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.89 E-value=2 Score=35.05 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHhhcCCCCCCeEEEEcCC-cChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 168 LMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 168 ~l~~~l~~~~~~~ILDiGCG-tG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+++......+.+||++|.| +|..+..++...+...|.-.|-++..++..++-...
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence 33333333457899999999 667777888887778999999999999888776544
No 377
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=73.88 E-value=2.7 Score=33.64 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=26.4
Q ss_pred cCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
..-+.+||.|...+...+ .+.+.|..|+.....+
T Consensus 31 ~~~Y~aC~~C~kkv~~~~----------~~~~~C~~C~~~~~~~ 64 (166)
T cd04476 31 NWWYPACPGCNKKVVEEG----------NGTYRCEKCNKSVPNP 64 (166)
T ss_pred CeEEccccccCcccEeCC----------CCcEECCCCCCcCCCc
Confidence 578899999999876443 1689999999886443
No 378
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=73.86 E-value=2.3 Score=37.12 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=23.3
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-.||.||.++..... ..++.+.|+.|....+.
T Consensus 236 ~pC~~Cg~~I~~~~~-------~gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 236 QPCPRCGTPIEKIVV-------GGRGTHFCPQCQPLRPL 267 (269)
T ss_pred CCCCcCCCeeEEEEE-------CCCCcEECCCCcCCCCC
Confidence 479999998764321 13678999999877653
No 379
>PRK10445 endonuclease VIII; Provisional
Probab=73.13 E-value=2.1 Score=37.23 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=20.9
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
--.||.||.++..... ..++.+.|++|..
T Consensus 235 g~~Cp~Cg~~I~~~~~-------~gR~t~~CP~CQ~ 263 (263)
T PRK10445 235 GEACERCGGIIEKTTL-------SSRPFYWCPGCQK 263 (263)
T ss_pred CCCCCCCCCEeEEEEE-------CCCCcEECCCCcC
Confidence 4679999998764421 2467899999963
No 380
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=72.98 E-value=2.3 Score=31.40 Aligned_cols=39 Identities=13% Similarity=0.338 Sum_probs=24.3
Q ss_pred cccCCCCCCCcc-cccCCCccccccCCCceECCCCCcccc
Q 026825 71 VLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 71 ~l~CPiC~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
...||.||+.-. ....+..+.++...-.+.|.+|++.+.
T Consensus 62 ~~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~~~w~ 101 (104)
T TIGR01384 62 RVECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCGYVWR 101 (104)
T ss_pred cCCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCCCeeE
Confidence 479999999432 222222333334445789999998764
No 381
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=72.41 E-value=2.7 Score=33.10 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=23.5
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
....||.|++|-+...- . ..--.+.|..||...+.
T Consensus 101 ~yVlC~~C~spdT~l~k---~---~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIK---E---GRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEE---c---CCeEEEEcccCCCCCcC
Confidence 57899999997543210 0 01136899999998665
No 382
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=72.22 E-value=2.6 Score=39.80 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=41.6
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
..+.+|-+|-|.|.+...+...-+..++++|++.+.|++.|++++.-
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence 36789999999999999998886667999999999999999998753
No 383
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=72.21 E-value=2.7 Score=32.90 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=23.1
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
....||.|++|-+...- .+ .--.+.|..||...+.
T Consensus 96 ~yVlC~~C~sPdT~l~k----~~--r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 96 KYVICRECNRPDTRIIK----EG--RVSLLKCEACGAKAPL 130 (133)
T ss_pred heEECCCCCCCCcEEEE----eC--CeEEEecccCCCCCcc
Confidence 66789999997543210 01 1125799999998765
No 384
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=71.84 E-value=22 Score=31.18 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=35.5
Q ss_pred CCCCeEEEEcCCcChHHH----HHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 176 VLGGNIIDASCGSGLFSR----IFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~----~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.....++|+|.|+-.-++ .++..+.-.+++.||+|...|+...+.+..
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~ 128 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR 128 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH
Confidence 346799999999885444 444545446899999999998876665543
No 385
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=71.59 E-value=2.4 Score=30.89 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=23.1
Q ss_pred CCcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-....||.|+.+-.... .-+++.|..|+..+..
T Consensus 33 ~a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG 65 (91)
T TIGR00280 33 KAKYVCPFCGKKTVKRG---------STGIWTCRKCGAKFAG 65 (91)
T ss_pred hcCccCCCCCCCceEEE---------eeEEEEcCCCCCEEeC
Confidence 35689999998533221 2368999999988643
No 386
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=70.63 E-value=17 Score=31.40 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825 175 PVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 175 ~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~ 219 (232)
..++.+||..|+| .|..+..+++. |. +|++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~--~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA--AVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHH
Confidence 3457788888876 47777777776 65 89999999999988855
No 387
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=70.60 E-value=2.1 Score=39.69 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=28.7
Q ss_pred ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
......-+.||.|+......+. ...-....+.++|..||..-..
T Consensus 122 d~t~~~~Y~Cp~C~kkyt~Lea--~~L~~~~~~~F~C~~C~gelve 165 (436)
T KOG2593|consen 122 DDTNVAGYVCPNCQKKYTSLEA--LQLLDNETGEFHCENCGGELVE 165 (436)
T ss_pred hccccccccCCccccchhhhHH--HHhhcccCceEEEecCCCchhc
Confidence 4566788999999986443321 1112224578999999877544
No 388
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.60 E-value=19 Score=33.00 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~ 224 (232)
..+|||.=+|+|.=++.++...+..+|+.=|+|+.+++..++++..+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc
Confidence 78999999999955555555543238999999999999999999876
No 389
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=70.45 E-value=2.7 Score=28.12 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=20.9
Q ss_pred ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
..+..-.+.||-||......-..-. ..+.-++|++||..
T Consensus 21 p~e~~v~F~CPnCGe~~I~Rc~~CR----k~g~~Y~Cp~CGF~ 59 (61)
T COG2888 21 PGETAVKFPCPNCGEVEIYRCAKCR----KLGNPYRCPKCGFE 59 (61)
T ss_pred cCCceeEeeCCCCCceeeehhhhHH----HcCCceECCCcCcc
Confidence 3445567889999864432211000 01235788888753
No 390
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.31 E-value=7 Score=29.98 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=27.5
Q ss_pred CCeEEEEcCCcC-hHHHHHHHhCCCCeEEEEeCCHH
Q 026825 178 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSEN 212 (232)
Q Consensus 178 ~~~ILDiGCGtG-~~~~~la~~g~~~~VvGvD~S~~ 212 (232)
.++|+++|.|-= ..+..|+++|. .|+++|+.+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK 47 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc
Confidence 469999997755 56778888898 9999999986
No 391
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=70.20 E-value=20 Score=29.67 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 176 VLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 176 ~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.++.+||.+|+|. |.....+++. |. +|++++.++...+.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~--~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGA--RVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHHh
Confidence 4588999999985 6666666665 54 999999999888887554
No 392
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=70.06 E-value=3.9 Score=31.00 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=26.4
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
+..||-|++-|....+ ...+.+.|+.||..+.....
T Consensus 2 m~FCp~Cgsll~p~~~-------~~~~~l~C~kCgye~~~~~~ 37 (113)
T COG1594 2 MRFCPKCGSLLYPKKD-------DEGGKLVCRKCGYEEEASNK 37 (113)
T ss_pred ccccCCccCeeEEeEc-------CCCcEEECCCCCcchhcccc
Confidence 3579999997765432 12348999999999887754
No 393
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.99 E-value=4 Score=38.93 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=19.9
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
..||.|..+|..+. ..+.+.|.-||.....
T Consensus 223 ~~C~~C~~~l~~h~---------~~~~l~Ch~Cg~~~~~ 252 (505)
T TIGR00595 223 LCCPNCDVSLTYHK---------KEGKLRCHYCGYQEPI 252 (505)
T ss_pred cCCCCCCCceEEec---------CCCeEEcCCCcCcCCC
Confidence 34888888887664 2356777777766553
No 394
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=69.88 E-value=2.5 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.548 Sum_probs=15.0
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
.|..|+....... ...++|+.||..-
T Consensus 2 ~C~~Cg~~~~~~~----------~~~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP----------GDPIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST----------SSTSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC----------CCcEECCcCCCeE
Confidence 5777777555331 2456888887653
No 395
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=69.68 E-value=2.8 Score=36.68 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=20.5
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~ 105 (232)
-..||.||.++..... ..++.+.|+.|.
T Consensus 244 g~pCprCG~~I~~~~~-------~gR~t~~CP~CQ 271 (272)
T PRK14810 244 GEPCLNCKTPIRRVVV-------AGRSSHYCPHCQ 271 (272)
T ss_pred CCcCCCCCCeeEEEEE-------CCCccEECcCCc
Confidence 4689999998754321 136789999996
No 396
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=69.49 E-value=3.1 Score=31.46 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=25.4
Q ss_pred ccccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 63 NEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 63 ~~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
-+.+..--.+.|+.|+....... ..+.||.||...
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVEIHQ-----------HDAQCPHCHGER 96 (113)
T ss_pred EEEEeeCcEEEcccCCCEEecCC-----------cCccCcCCCCCC
Confidence 35677778899999997555332 355799999763
No 397
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=69.35 E-value=11 Score=34.63 Aligned_cols=50 Identities=18% Similarity=0.011 Sum_probs=36.3
Q ss_pred CCeEEEEcCCcC-hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825 178 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (232)
Q Consensus 178 ~~~ILDiGCGtG-~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~ 227 (232)
+-++||.=+|+| +-.+++.+.....+|+.-|+|+++++..+++++.++..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~ 100 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE 100 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc
Confidence 468999999999 55555555332349999999999999999998876654
No 398
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=68.84 E-value=3.3 Score=31.54 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=26.4
Q ss_pred CccccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 62 ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 62 ~~~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
+-+.+..--.+.|+.|+......+ ....+||.||....
T Consensus 62 ~L~Ie~vp~~~~C~~Cg~~~~~~~----------~~~~~CP~Cgs~~~ 99 (117)
T PRK00564 62 ILDIVDEKVELECKDCSHVFKPNA----------LDYGVCEKCHSKNV 99 (117)
T ss_pred EEEEEecCCEEEhhhCCCccccCC----------ccCCcCcCCCCCce
Confidence 345677778999999997554332 13457999998743
No 399
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=68.63 E-value=3 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.612 Sum_probs=22.7
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
....||.|+.+-.... .-+++.|..|+..+..
T Consensus 35 a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG 66 (90)
T PRK03976 35 AKHVCPVCGRPKVKRV---------GTGIWECRKCGAKFAG 66 (90)
T ss_pred cCccCCCCCCCceEEE---------EEEEEEcCCCCCEEeC
Confidence 5689999987543221 2368999999888643
No 400
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=68.42 E-value=3.2 Score=36.45 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=20.5
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~ 105 (232)
-..||.||.++..... ..++.+.|+.|.
T Consensus 254 g~pC~~Cg~~I~~~~~-------~gR~t~~CP~CQ 281 (282)
T PRK13945 254 GKPCRKCGTPIERIKL-------AGRSTHWCPNCQ 281 (282)
T ss_pred cCCCCcCCCeeEEEEE-------CCCccEECCCCc
Confidence 3589999998764321 236789999996
No 401
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=68.40 E-value=2.3 Score=30.93 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=5.9
Q ss_pred EEEcCCcChHHHHHHHhCCC---CeEEEEeCCHH
Q 026825 182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSEN 212 (232)
Q Consensus 182 LDiGCGtG~~~~~la~~g~~---~~VvGvD~S~~ 212 (232)
||||+..|..+..+++.... .+++++|+.+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG 34 (106)
T ss_dssp --------------------------EEEESS--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc
Confidence 68999999888777765221 37999999995
No 402
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=68.17 E-value=3.6 Score=31.98 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=27.8
Q ss_pred ccCCcccCCCCCCCc-ccccCCCccccccCCCceECCCCCcccccCCCc
Q 026825 67 TSKNVLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~ 114 (232)
...-...||.|.+.- ...+- ..-....++|+.|+..|....++
T Consensus 26 ~~~~~~~cP~C~s~~~~k~g~-----~~~~~qRyrC~~C~~tf~~~~~~ 69 (129)
T COG3677 26 MQITKVNCPRCKSSNVVKIGG-----IRRGHQRYKCKSCGSTFTVETGS 69 (129)
T ss_pred hhcccCcCCCCCccceeeECC-----ccccccccccCCcCcceeeeccC
Confidence 344557899999865 22221 11113578999999998876655
No 403
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=67.99 E-value=3.3 Score=36.22 Aligned_cols=28 Identities=29% Similarity=0.639 Sum_probs=20.3
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
-.||.||.++..... ..++.+.|+.|..
T Consensus 246 ~pC~~Cg~~I~~~~~-------~gR~t~~CP~CQ~ 273 (274)
T PRK01103 246 EPCRRCGTPIEKIKQ-------GGRSTFFCPRCQK 273 (274)
T ss_pred CCCCCCCCeeEEEEE-------CCCCcEECcCCCC
Confidence 469999998754321 1367899999964
No 404
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=67.97 E-value=3.5 Score=32.76 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=23.2
Q ss_pred cCCCCCCCcccccCCC-ccccccCCCceECCCCCcccccC
Q 026825 73 ACPICYKPLTWIGDSS-LSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~-~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
.||-|+++-...-|+- ...+...+.--.|.+|+.-|..-
T Consensus 2 ~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTy 41 (147)
T TIGR00244 2 HCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTF 41 (147)
T ss_pred CCCCCCCCCCEeeeccccCCCCeeeecccCCccCCcccee
Confidence 6999999644433321 11221223345899999998763
No 405
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=67.91 E-value=5.4 Score=23.90 Aligned_cols=30 Identities=20% Similarity=0.575 Sum_probs=18.1
Q ss_pred cccCCCCCCCc--ccccCCCccccccCCCceECCCCC
Q 026825 71 VLACPICYKPL--TWIGDSSLSIESAAGSSLQCNTCK 105 (232)
Q Consensus 71 ~l~CPiC~~~l--~~~~~~~~~~~~~~~~~l~C~~C~ 105 (232)
.+.||.|+++. ..++. ..-....++|..|+
T Consensus 5 ~v~CP~C~s~~~v~k~G~-----~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGK-----SPSGHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCC-----CCCCCEeEecCcCC
Confidence 36799999955 43432 11122468999884
No 406
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=67.85 E-value=3.2 Score=33.11 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=23.6
Q ss_pred cCCCCCCCcccccCC--CccccccCCCceECCCCCcccccC
Q 026825 73 ACPICYKPLTWIGDS--SLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~--~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
.||-|+++-...-|+ ......| +.--.|++||..|..=
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aI-RRRReC~~C~~RFTTf 41 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAI-RRRRECLECGERFTTF 41 (156)
T ss_pred CCCCCCCCCCeeeecccccccchh-hhhhcccccccccchh
Confidence 699999964443332 2222233 3456899999998763
No 407
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=67.75 E-value=11 Score=29.23 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCeEEEEcCCcC-hHHHHHHHhCCCCeEEEEeCCHH
Q 026825 178 GGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSEN 212 (232)
Q Consensus 178 ~~~ILDiGCGtG-~~~~~la~~g~~~~VvGvD~S~~ 212 (232)
.++|+|||-|.= ..+..|++.|. .|+++|+.+.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~--dV~~tDi~~~ 47 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGF--DVIATDINPR 47 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S
T ss_pred CCcEEEECcCCCHHHHHHHHHcCC--cEEEEECccc
Confidence 469999999866 77788888897 9999999997
No 408
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=67.56 E-value=3.3 Score=33.53 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=20.5
Q ss_pred CCCCCCC-cccccCCCccccccC---CCceECCCCCccccc
Q 026825 74 CPICYKP-LTWIGDSSLSIESAA---GSSLQCNTCKKTYSG 110 (232)
Q Consensus 74 CPiC~~~-l~~~~~~~~~~~~~~---~~~l~C~~C~~~y~~ 110 (232)
||+||.+ +.... ...+.+.+. -.++.|+.||..+..
T Consensus 1 CP~Cg~~~~~~~~-~~~~IP~F~evii~sf~C~~CGyr~~e 40 (163)
T TIGR00340 1 CPVCGSRTLKAVT-YDYDIPYFGKIMLSTYICEKCGYRSTD 40 (163)
T ss_pred CCCCCCcceEeee-EeccCCCcceEEEEEEECCCCCCchhh
Confidence 9999985 33311 012222221 136799999988654
No 409
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=67.29 E-value=3.1 Score=41.63 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=19.7
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
.||.||.+|...+ +.+.|.+||..
T Consensus 726 ~Cp~Cg~~l~~~~-----------GC~~C~~CG~s 749 (752)
T PRK08665 726 ACPECGSILEHEE-----------GCVVCHSCGYS 749 (752)
T ss_pred CCCCCCcccEECC-----------CCCcCCCCCCC
Confidence 6999998877554 78999999864
No 410
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=67.27 E-value=3.7 Score=31.12 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=25.5
Q ss_pred ccccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 63 NEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 63 ~~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
-+.+..--...|+.|+....... ..+.||.||...
T Consensus 62 L~I~~~p~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (115)
T TIGR00100 62 LNIEDEPVECECEDCSEEVSPEI-----------DLYRCPKCHGIM 96 (115)
T ss_pred EEEEeeCcEEEcccCCCEEecCC-----------cCccCcCCcCCC
Confidence 35667778899999997555432 257899999764
No 411
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=67.21 E-value=3.3 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=19.3
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
.+.|+.|+..+.... ... ......|+.||..
T Consensus 5 ey~C~~Cg~~fe~~~--~~~----~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 5 EYRCTACGHRFEVLQ--KMS----DDPLATCPECGGE 35 (52)
T ss_pred EEEeCCCCCEeEEEE--ecC----CCCCCCCCCCCCC
Confidence 478999998554331 111 1245679999874
No 412
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=67.07 E-value=3.7 Score=27.01 Aligned_cols=26 Identities=35% Similarity=0.800 Sum_probs=17.3
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
++-.||.||..-.. -..|++|| +|..
T Consensus 25 ~l~~c~~cg~~~~~--------------H~vc~~cG-~y~~ 50 (56)
T PF01783_consen 25 NLVKCPNCGEPKLP--------------HRVCPSCG-YYKG 50 (56)
T ss_dssp SEEESSSSSSEEST--------------TSBCTTTB-BSSS
T ss_pred ceeeeccCCCEecc--------------cEeeCCCC-eECC
Confidence 56789999974332 34788897 4443
No 413
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=66.86 E-value=41 Score=31.89 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHhhcCCC--CCCeEEEEcCCcChHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 159 FPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~--~~~~ILDiGCGtG~~~~~la~~---g-~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
++.|......+.+.+... +...+.|.-||+|.++....+. + ....++|-+....|...|+.++.-
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l 267 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMIL 267 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHH
Confidence 666776777666665542 4578999999999988765432 1 113699999999999999998643
No 414
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=66.62 E-value=23 Score=32.28 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHhhcCCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 169 MKGYLKPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 169 l~~~l~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
...-....++.++.-+||| .|.....-++. |. .++++||+.+.-++.|++.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc
Confidence 3444455678899999998 56555555555 44 5999999999999999876
No 415
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=66.44 E-value=4.1 Score=30.88 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=25.4
Q ss_pred ccccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 63 NEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 63 ~~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
-+.+..--.+.|+.|+....... ...+.||.||...
T Consensus 62 L~i~~~p~~~~C~~Cg~~~~~~~----------~~~~~CP~Cgs~~ 97 (114)
T PRK03681 62 LHLEEQEAECWCETCQQYVTLLT----------QRVRRCPQCHGDM 97 (114)
T ss_pred EEEEeeCcEEEcccCCCeeecCC----------ccCCcCcCcCCCC
Confidence 35667778899999998554332 1246799999764
No 416
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.02 E-value=3.7 Score=35.86 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=20.3
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCC
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~ 105 (232)
-..||.||.++..... ..++.+.|+.|.
T Consensus 245 g~pC~~Cg~~I~~~~~-------~gR~t~~CP~CQ 272 (272)
T TIGR00577 245 GEPCRRCGTPIEKIKV-------GGRGTHFCPQCQ 272 (272)
T ss_pred CCCCCCCCCeeEEEEE-------CCCCCEECCCCC
Confidence 3589999998764421 136789999994
No 417
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=65.92 E-value=4 Score=31.88 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=25.6
Q ss_pred cccccCCcccCCCCCCCccccc----------CCCccccccCCCceECCCCCccc
Q 026825 64 EASTSKNVLACPICYKPLTWIG----------DSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 64 ~~~~~~~~l~CPiC~~~l~~~~----------~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
+.+..-..+.|+.||......+ ......+......+.||.||...
T Consensus 63 ~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~ 117 (135)
T PRK03824 63 IFEEEEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRD 117 (135)
T ss_pred EEEecceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCC
Confidence 3455557899999997543321 00011111113467899999764
No 418
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=65.53 E-value=11 Score=34.21 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=31.9
Q ss_pred CCeEEEEcCCcC----hHHHHHHHhCCCCeEEEEeCCHHHH
Q 026825 178 GGNIIDASCGSG----LFSRIFAKSGLFSLVVALDYSENML 214 (232)
Q Consensus 178 ~~~ILDiGCGtG----~~~~~la~~g~~~~VvGvD~S~~ml 214 (232)
...++-.|.||| ..++++.+++++.+|+|+|+.+..+
T Consensus 212 ~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~ 252 (362)
T KOG1252|consen 212 KVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIV 252 (362)
T ss_pred CCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCccee
Confidence 557888899998 6789999999999999999987654
No 419
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=65.39 E-value=16 Score=32.47 Aligned_cols=44 Identities=16% Similarity=-0.041 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825 176 VLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 176 ~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~ 219 (232)
.++.+||-+|+| .|.++..++++ ....+|+++|.+++-++.|++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 458899999986 34455555553 212489999999988888865
No 420
>PRK08703 short chain dehydrogenase; Provisional
Probab=65.09 E-value=37 Score=28.00 Aligned_cols=45 Identities=16% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
+++++|-.|++.| .+...++++|. +|++++-++..++...+.+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~ 52 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIVE 52 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHHH
Confidence 4678999997555 44555666677 899999999877766665543
No 421
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=64.91 E-value=4 Score=35.66 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=20.0
Q ss_pred cCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
.-..-.||.||. .. .+.+.|+.||...
T Consensus 306 ~~tS~~C~~cg~---~~-----------~r~~~C~~cg~~~ 332 (364)
T COG0675 306 YYTSKTCPCCGH---LS-----------GRLFKCPRCGFVH 332 (364)
T ss_pred CCCcccccccCC---cc-----------ceeEECCCCCCee
Confidence 345568999999 21 3579999998863
No 422
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=64.86 E-value=4 Score=31.90 Aligned_cols=34 Identities=35% Similarity=0.598 Sum_probs=23.3
Q ss_pred cCCcccCC--CCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 68 SKNVLACP--ICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 68 ~~~~l~CP--iC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
..-+.+|| .|+..+...+ .+.++|+.|+.....+
T Consensus 15 ~~~Y~aC~~~~C~kKv~~~~----------~~~y~C~~C~~~~~~~ 50 (146)
T PF08646_consen 15 NWYYPACPNEKCNKKVTENG----------DGSYRCEKCNKTVENP 50 (146)
T ss_dssp TTEEEE-TSTTTS-B-EEET----------TTEEEETTTTEEESS-
T ss_pred CcEECCCCCccCCCEeecCC----------CcEEECCCCCCcCCCe
Confidence 56788999 9999776543 2679999999886544
No 423
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=64.67 E-value=7.3 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=23.8
Q ss_pred cccccCCcccCCCCCC--CcccccCCCccccccCCCceECCCCCcc
Q 026825 64 EASTSKNVLACPICYK--PLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 64 ~~~~~~~~l~CPiC~~--~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
+..+..-.|+|+.|+. .+...+ ....-.++|+.|+..
T Consensus 15 ~~~~~r~aLIC~~C~~hNGla~~~-------~~~~i~y~C~~Cg~~ 53 (54)
T PF10058_consen 15 TSPSNRYALICSKCFSHNGLAPKE-------EFEEIQYRCPYCGAL 53 (54)
T ss_pred ccccCceeEECcccchhhcccccc-------cCCceEEEcCCCCCc
Confidence 3446667899999987 233211 123347899999864
No 424
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=64.51 E-value=2 Score=35.20 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=26.9
Q ss_pred cccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
+.++.-..+.||.|.-++.+.+. ....+.||.||..
T Consensus 106 e~~~~~~~y~C~~~~~r~sfdeA--------~~~~F~Cp~Cg~~ 141 (176)
T COG1675 106 EKETENNYYVCPNCHVKYSFDEA--------MELGFTCPKCGED 141 (176)
T ss_pred HhhccCCceeCCCCCCcccHHHH--------HHhCCCCCCCCch
Confidence 45667789999999998776542 2234899999876
No 425
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=63.85 E-value=3.6 Score=26.68 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=24.7
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
..++|+.|+.-|...+. ...-...|+.|+.....+
T Consensus 3 ~eiRC~~CnklLa~~g~-------~~~leIKCpRC~tiN~~~ 37 (51)
T PF10122_consen 3 KEIRCGHCNKLLAKAGE-------VIELEIKCPRCKTINHVR 37 (51)
T ss_pred cceeccchhHHHhhhcC-------ccEEEEECCCCCccceEe
Confidence 46899999998876532 112356899999886554
No 426
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=63.81 E-value=4.6 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=14.8
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
..|++||...... ..-..|+.||..
T Consensus 2 ~~C~~CGy~y~~~-----------~~~~~CP~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGE-----------EAPWVCPVCGAP 26 (33)
T ss_pred EECCCCCCEECCC-----------cCCCcCcCCCCc
Confidence 4688888743211 134578888763
No 427
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=63.60 E-value=2.2 Score=33.95 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=21.5
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
...||.||+.-.... +.+....=+..++|..|..-|
T Consensus 105 ~~~cp~c~s~~t~~~--s~fg~t~cka~~~c~~c~epf 140 (146)
T TIGR02159 105 SVQCPRCGSADTTIT--SIFGPTACKALYRCRACKEPF 140 (146)
T ss_pred CCcCCCCCCCCcEee--cCCCChhhHHHhhhhhhCCcH
Confidence 479999999543322 122222223468999997665
No 428
>PRK05867 short chain dehydrogenase; Provisional
Probab=63.40 E-value=27 Score=29.15 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++++|-.|++.| .++..|++.|. +|+.++.+++.++...+.+..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~ 55 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGT 55 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHh
Confidence 4788999998766 55666677787 999999998877777666543
No 429
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=63.40 E-value=5.9 Score=36.54 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.7
Q ss_pred CCeEEEEcCCcChHHHHH
Q 026825 178 GGNIIDASCGSGLFSRIF 195 (232)
Q Consensus 178 ~~~ILDiGCGtG~~~~~l 195 (232)
...|+|+|||+|.++..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 568999999999776544
No 430
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=63.37 E-value=5.4 Score=30.85 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=21.4
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
.+..||.|++|-.... .. ..--.++|..||..
T Consensus 92 ~yVlC~~C~spdT~l~---k~---~r~~~l~C~aCGa~ 123 (125)
T PF01873_consen 92 EYVLCPECGSPDTELI---KE---GRLIFLKCKACGAS 123 (125)
T ss_dssp HHSSCTSTSSSSEEEE---EE---TTCCEEEETTTSCE
T ss_pred HEEEcCCCCCCccEEE---Ec---CCEEEEEecccCCc
Confidence 5578999999754321 01 12247899999975
No 431
>PRK07035 short chain dehydrogenase; Provisional
Probab=62.97 E-value=29 Score=28.83 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++++|=.|++.| .+...|.+.|. +|+++|.++..++...+.+.+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~ 54 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVA 54 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 3678999998877 55556666787 999999998877766666543
No 432
>PRK12829 short chain dehydrogenase; Provisional
Probab=62.96 E-value=33 Score=28.57 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 176 ~~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
.+++++|-.|++.| .++..|.++|. +|++++-+++.++...+..
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~ 55 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARL 55 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH
Confidence 45789999998644 33444555577 8999999988776655443
No 433
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=62.95 E-value=4.9 Score=32.64 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=19.0
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
..+||+||....- + .--.||.||..
T Consensus 134 ~~vC~vCGy~~~g-e-----------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG-E-----------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC-C-----------CCCcCCCCCCh
Confidence 7899999997663 2 23589999865
No 434
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=62.89 E-value=2.9 Score=36.65 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=25.8
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
--..||.|+.-+...+ ++.+...|+.|++.+..
T Consensus 27 lw~KCp~c~~~~y~~e--------L~~n~~vcp~c~~h~ri 59 (294)
T COG0777 27 LWTKCPSCGEMLYRKE--------LESNLKVCPKCGHHMRI 59 (294)
T ss_pred ceeECCCccceeeHHH--------HHhhhhcccccCccccc
Confidence 4567999999776554 35568899999998876
No 435
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=62.24 E-value=8.3 Score=23.37 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=18.3
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCC---CCcccc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT---CKKTYS 109 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~---C~~~y~ 109 (232)
.||.|+++|..... . ....+.|.+ |.....
T Consensus 3 ~CP~Cg~~lv~r~~--k-----~g~F~~Cs~yP~C~~~~~ 35 (39)
T PF01396_consen 3 KCPKCGGPLVLRRG--K-----KGKFLGCSNYPECKYTEP 35 (39)
T ss_pred CCCCCCceeEEEEC--C-----CCCEEECCCCCCcCCeEe
Confidence 59999998765431 1 114567875 655443
No 436
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=62.15 E-value=5.8 Score=34.89 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=27.2
Q ss_pred ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc-cccCCCc
Q 026825 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT-YSGVGTH 114 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~-y~~~~g~ 114 (232)
+....-.||.||++..... .+....|++|+.. ||...+-
T Consensus 107 w~~~~RFCg~CG~~~~~~~---------~g~~~~C~~cg~~~fPR~dP~ 146 (279)
T COG2816 107 WYRSHRFCGRCGTKTYPRE---------GGWARVCPKCGHEHFPRIDPC 146 (279)
T ss_pred HHhhCcCCCCCCCcCcccc---------CceeeeCCCCCCccCCCCCCe
Confidence 4556678999999877654 2457899999765 5554443
No 437
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=61.69 E-value=4.4 Score=30.57 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=12.5
Q ss_pred CceECCCCCcccccCC
Q 026825 97 SSLQCNTCKKTYSGVG 112 (232)
Q Consensus 97 ~~l~C~~C~~~y~~~~ 112 (232)
..+.|+.||..+...+
T Consensus 30 ~~~~C~~CGe~~~~~e 45 (127)
T TIGR03830 30 PGWYCPACGEELLDPE 45 (127)
T ss_pred eeeECCCCCCEEEcHH
Confidence 4679999999876654
No 438
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.65 E-value=29 Score=30.75 Aligned_cols=44 Identities=27% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825 174 KPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 174 ~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~ 219 (232)
...++.+||-+|+|. |..+..+++. |. +|+++|.+++.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~--~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA--AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH
Confidence 345588999999964 6666666666 54 89999999999888865
No 439
>PRK12366 replication factor A; Reviewed
Probab=61.12 E-value=5 Score=39.43 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=22.9
Q ss_pred cCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
..-+-+||.|...+... .+.++|+.|+..
T Consensus 529 ~~~y~aCp~CnkKv~~~-----------~g~~~C~~c~~~ 557 (637)
T PRK12366 529 KIILYLCPNCRKRVEEV-----------DGEYICEFCGEV 557 (637)
T ss_pred CEEEecccccCeEeEcC-----------CCcEECCCCCCC
Confidence 45678999998876532 368999999988
No 440
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.08 E-value=5.4 Score=30.89 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=24.8
Q ss_pred CCcccCCCCCCCcccccCC--CccccccCCCceECCCCCcccccCC
Q 026825 69 KNVLACPICYKPLTWIGDS--SLSIESAAGSSLQCNTCKKTYSGVG 112 (232)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~--~~~~~~~~~~~l~C~~C~~~y~~~~ 112 (232)
.-++.||+|..+..-.-+. -...+.-++---.|.+||+.|+-.+
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 3578999998754322110 0111111222347999999998643
No 441
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=60.97 E-value=2.7 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=24.2
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-..||.|+..+...+ +..+...|+.|++.+..
T Consensus 26 ~~~c~~c~~~~~~~~--------l~~~~~vc~~c~~h~rl 57 (285)
T TIGR00515 26 WTKCPKCGQVLYTKE--------LERNLEVCPKCDHHMRM 57 (285)
T ss_pred eeECCCCcchhhHHH--------HHhhCCCCCCCCCcCcC
Confidence 567999999766543 34557899999988775
No 442
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=60.95 E-value=7.5 Score=27.53 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=19.1
Q ss_pred ccCCCCCCC-cccccCCCccccccCCCceECCCCCccc
Q 026825 72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (232)
Q Consensus 72 l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y 108 (232)
+.||.||.. |...+ ...+-.|+.|+-.+
T Consensus 2 ~~CPCCg~~Tl~~~~---------~~~ydIC~VC~WEd 30 (78)
T PF14206_consen 2 YPCPCCGYYTLEERG---------EGTYDICPVCFWED 30 (78)
T ss_pred ccCCCCCcEEeccCC---------CcCceECCCCCccc
Confidence 689999994 43322 22377999997764
No 443
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=60.91 E-value=36 Score=28.34 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++++|-.|++.| .+...+++.|. +|+.++-+++.++...+.+++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~ 57 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRA 57 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 4788999997554 34445666677 999999998877766665544
No 444
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.63 E-value=27 Score=31.62 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 175 ~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
..++.++--+|+|. |....+-++. |+ ++++|||++++-.+.|++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHhc
Confidence 35688888889884 5444444444 55 6999999999999988875
No 445
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=60.39 E-value=3.6 Score=36.06 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=9.6
Q ss_pred CCcccCCCCCC
Q 026825 69 KNVLACPICYK 79 (232)
Q Consensus 69 ~~~l~CPiC~~ 79 (232)
++.-.||+||+
T Consensus 183 e~~~~CPvCGS 193 (308)
T COG3058 183 ESRQYCPVCGS 193 (308)
T ss_pred cccccCCCcCC
Confidence 56789999999
No 446
>PRK05580 primosome assembly protein PriA; Validated
Probab=60.25 E-value=7.7 Score=38.38 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=19.0
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
+.||.|..+|..+. ..+.+.|..||....
T Consensus 391 ~~C~~C~~~l~~h~---------~~~~l~Ch~Cg~~~~ 419 (679)
T PRK05580 391 AECPHCDASLTLHR---------FQRRLRCHHCGYQEP 419 (679)
T ss_pred cCCCCCCCceeEEC---------CCCeEECCCCcCCCC
Confidence 46888888887653 235667777766654
No 447
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=60.03 E-value=6.8 Score=24.34 Aligned_cols=14 Identities=50% Similarity=0.757 Sum_probs=10.7
Q ss_pred ccCCCCCCCccccc
Q 026825 72 LACPICYKPLTWIG 85 (232)
Q Consensus 72 l~CPiC~~~l~~~~ 85 (232)
-.||.||+.|...+
T Consensus 3 ~~C~~Cg~~l~~ig 16 (47)
T PF13005_consen 3 RACPDCGGELKEIG 16 (47)
T ss_pred CcCCCCCceeeECC
Confidence 47999999877544
No 448
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=60.02 E-value=3.6 Score=37.21 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=20.7
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
.||+||....-- ..+.+.|.+|.-+|..
T Consensus 17 lCPVCGDkVSGY----------HYGLLTCESCKGFFKR 44 (475)
T KOG4218|consen 17 LCPVCGDKVSGY----------HYGLLTCESCKGFFKR 44 (475)
T ss_pred ccccccCccccc----------eeeeeehhhhhhHHHH
Confidence 599999865522 3468999999877654
No 449
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=59.68 E-value=21 Score=26.64 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=23.6
Q ss_pred ccCCCCCCCcccccC-CCccccccCCC-ceECCCCCcccccCC
Q 026825 72 LACPICYKPLTWIGD-SSLSIESAAGS-SLQCNTCKKTYSGVG 112 (232)
Q Consensus 72 l~CPiC~~~l~~~~~-~~~~~~~~~~~-~l~C~~C~~~y~~~~ 112 (232)
..||-||.+..+... ........... .+.|..|+..-....
T Consensus 3 ~~CpYCg~~~~l~~~~~iYg~~~~~~~~~y~C~~C~AyVG~H~ 45 (102)
T PF11672_consen 3 IICPYCGGPAELVDGSEIYGHRYDDGPYLYVCTPCDAYVGCHP 45 (102)
T ss_pred cccCCCCCeeEEcccchhcCccCCCCceeEECCCCCceeeeeC
Confidence 579999996544332 12222211223 389999988755444
No 450
>PRK07063 short chain dehydrogenase; Provisional
Probab=59.65 E-value=34 Score=28.60 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++++|-.|++.| .++..|++.|+ +|+.+|.++..++...+.+..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~ 53 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIAR 53 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 4678999998765 45566777787 999999999888877776654
No 451
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=59.64 E-value=6.6 Score=32.82 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=24.3
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
.+..||.|++|-+...- .. .--.++|..||...+..
T Consensus 97 ~yV~C~~C~~pdT~l~k---~~---~~~~l~C~aCGa~~~v~ 132 (201)
T PRK12336 97 EYVICSECGLPDTRLVK---ED---RVLMLRCDACGAHRPVK 132 (201)
T ss_pred heEECCCCCCCCcEEEE---cC---CeEEEEcccCCCCcccc
Confidence 57899999997543210 00 11257999999998775
No 452
>PRK08339 short chain dehydrogenase; Provisional
Probab=59.54 E-value=38 Score=28.67 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++++|-.|++.| .++..|++.|+ +|+.+|.++.-++.+.+.+.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~ 54 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKS 54 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 4678999998766 56667777787 999999998887777666543
No 453
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=59.29 E-value=5 Score=34.53 Aligned_cols=39 Identities=18% Similarity=0.409 Sum_probs=16.4
Q ss_pred ccCCcccCCCCCCC-cccccCCCccccccCCCceECCCCCcccccC
Q 026825 67 TSKNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (232)
Q Consensus 67 ~~~~~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~ 111 (232)
+......||.||+. |...++ .-+-.-+.|+.|+..|-.+
T Consensus 27 Wv~~n~yCP~Cg~~~L~~f~N------N~PVaDF~C~~C~eeyELK 66 (254)
T PF06044_consen 27 WVAENMYCPNCGSKPLSKFEN------NRPVADFYCPNCNEEYELK 66 (254)
T ss_dssp HHHHH---TTT--SS-EE--------------EEE-TTT--EEEEE
T ss_pred HHHHCCcCCCCCChhHhhccC------CCccceeECCCCchHHhhh
Confidence 45567899999995 654432 1122358999999998763
No 454
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.28 E-value=25 Score=31.26 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=41.6
Q ss_pred CCCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825 176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (232)
Q Consensus 176 ~~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~ 225 (232)
..++.||==|.|.| .++..++++|. +++-+|++........+.+++.|
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC
Confidence 45789999999998 67888899998 99999999999999988888654
No 455
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=59.19 E-value=5.9 Score=25.51 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=21.6
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-.+.|-.|+..+.... .....+|+.||+--..
T Consensus 5 ~~Y~C~~Cg~~~~~~~---------~~~~irCp~Cg~rIl~ 36 (49)
T COG1996 5 MEYKCARCGREVELDQ---------ETRGIRCPYCGSRILV 36 (49)
T ss_pred EEEEhhhcCCeeehhh---------ccCceeCCCCCcEEEE
Confidence 4578999998774221 2357899999876443
No 456
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=58.99 E-value=37 Score=29.93 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 176 VLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 176 ~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.++.+||-+|+| .|.++..+++. |. .+|+++|.+++-++.+++.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHc
Confidence 357889989886 44566666666 43 3699999999999988763
No 457
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=58.89 E-value=10 Score=21.95 Aligned_cols=27 Identities=26% Similarity=0.623 Sum_probs=20.3
Q ss_pred ccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
+.|.-|+..|..-. ....++|..|+..
T Consensus 2 ~~C~~C~t~L~yP~---------gA~~vrCs~C~~v 28 (31)
T TIGR01053 2 VVCGGCRTLLMYPR---------GASSVRCALCQTV 28 (31)
T ss_pred cCcCCCCcEeecCC---------CCCeEECCCCCeE
Confidence 57999999887543 3468999999765
No 458
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.88 E-value=24 Score=31.62 Aligned_cols=42 Identities=21% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCeEEEEcCCc-C-hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825 178 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 178 ~~~ILDiGCGt-G-~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
-++|--||+|+ | .++..++..|. +|+.+|++++.++.+++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHH
Confidence 35788899984 2 66667778888 9999999999888776654
No 459
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=58.52 E-value=30 Score=30.83 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCCCCCeEEEEcC--CcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 174 KPVLGGNIIDASC--GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 174 ~~~~~~~ILDiGC--GtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
...++.+||=.|+ |.|.++..+++. |. +|++++.+++-++.+++.+.
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~--~Vi~~~~~~~k~~~~~~~lG 204 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGC--YVVGSAGSSQKVDLLKNKLG 204 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHhcC
Confidence 3456889999998 367777777777 55 89999999988887775443
No 460
>PRK14873 primosome assembly protein PriA; Provisional
Probab=58.43 E-value=7.1 Score=38.58 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=13.4
Q ss_pred CeEEEEeCCHHHHHHHHHHhh
Q 026825 202 SLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 202 ~~VvGvD~S~~ml~~A~~~~~ 222 (232)
.+++.|+.+...++.+.+.+.
T Consensus 571 ~~la~i~~~~~~~~~~~~~~~ 591 (665)
T PRK14873 571 VRMAAVDGRPAAVAALLEAAG 591 (665)
T ss_pred eeeEEEEEcHHHHHHHHHHhc
Confidence 467777777766666655443
No 461
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=58.40 E-value=2.9 Score=37.07 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.1
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-..||.|+..+...+ +..+...|+.|++.+..
T Consensus 27 ~~~c~~c~~~~~~~~--------l~~~~~vc~~c~~h~rl 58 (292)
T PRK05654 27 WTKCPSCGQVLYRKE--------LEANLNVCPKCGHHMRI 58 (292)
T ss_pred eeECCCccchhhHHH--------HHhcCCCCCCCCCCeeC
Confidence 678999999766543 24456799999998875
No 462
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=58.36 E-value=9.5 Score=25.29 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=17.6
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
++..||.||+.-.. -..|+.||..
T Consensus 26 ~l~~C~~CG~~~~~--------------H~vC~~CG~Y 49 (57)
T PRK12286 26 GLVECPNCGEPKLP--------------HRVCPSCGYY 49 (57)
T ss_pred cceECCCCCCccCC--------------eEECCCCCcC
Confidence 56789999996542 3579999843
No 463
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=58.30 E-value=5.9 Score=34.75 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=20.3
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
--.|+.||.+...... ..++.+.|+.|..
T Consensus 245 GepC~~CGt~I~k~~~-------~gR~t~~CP~CQ~ 273 (273)
T COG0266 245 GEPCRRCGTPIEKIKL-------GGRSTFYCPVCQK 273 (273)
T ss_pred CCCCCccCCEeEEEEE-------cCCcCEeCCCCCC
Confidence 3479999997654321 2457899999963
No 464
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=58.27 E-value=25 Score=32.15 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCCcCh----HHHHHHHhC---CCCeEEEEeC----CHHHHHHHHHHhhc
Q 026825 167 ELMKGYLKPVLGGNIIDASCGSGL----FSRIFAKSG---LFSLVVALDY----SENMLKQCYEFVQQ 223 (232)
Q Consensus 167 ~~l~~~l~~~~~~~ILDiGCGtG~----~~~~la~~g---~~~~VvGvD~----S~~ml~~A~~~~~~ 223 (232)
..|++.+...+...|+|+|.|.|. +...|+.+. +.-+|+||+. +..-++.+.+++.+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 345555555567789999999993 334444441 2348999999 88889888888764
No 465
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=58.24 E-value=3.4 Score=26.74 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=19.9
Q ss_pred CcccCCCCCCCcccccCC---CccccccCCCceECCCCCc
Q 026825 70 NVLACPICYKPLTWIGDS---SLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~---~~~~~~~~~~~l~C~~C~~ 106 (232)
+.+.||.|+..+...+-. ...+. .....+.||-|..
T Consensus 1 ~~f~CP~C~~~~~~~~L~~H~~~~H~-~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSESSLVEHCEDEHR-SESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHHHHHHHHHhHCc-CCCCCccCCCchh
Confidence 358999999854332110 01111 1234689999975
No 466
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=58.04 E-value=8.7 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=22.0
Q ss_pred cccCCCCCC--Cccc-ccCCCccccccCCCceECCCCCcccccCCC
Q 026825 71 VLACPICYK--PLTW-IGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 71 ~l~CPiC~~--~l~~-~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
=-.||.|+. .+.. .++ .-....|-.||.....++.
T Consensus 9 GA~CP~C~~~Dtl~~~~e~--------~~e~vECv~Cg~~~~~~~~ 46 (59)
T TIGR02443 9 GAVCPACSAQDTLAMWKEN--------NIELVECVECGYQEQQKDQ 46 (59)
T ss_pred cccCCCCcCccEEEEEEeC--------CceEEEeccCCCccccCCc
Confidence 357999998 2322 211 1246899999988655444
No 467
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=57.84 E-value=39 Score=31.44 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=34.6
Q ss_pred HHHHhhcCC-CCCCeEEEEcCCc-ChHHHHHHH-hCCCCeEEEEeCCHHHHHHHHH
Q 026825 167 ELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAK-SGLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 167 ~~l~~~l~~-~~~~~ILDiGCGt-G~~~~~la~-~g~~~~VvGvD~S~~ml~~A~~ 219 (232)
+.+.+.... ..+++|+-+|+|. |.....+++ .|. +|+.+|.++.-+..|++
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAM 243 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHh
Confidence 344443332 4689999999994 544444443 365 89999999987777765
No 468
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=57.76 E-value=7 Score=29.30 Aligned_cols=30 Identities=27% Similarity=0.734 Sum_probs=22.7
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
+-.||.|.+..+..+ ...+.|+.|.+.+..
T Consensus 3 lp~cp~c~sEytYed----------~~~~~cpec~~ew~~ 32 (112)
T COG2824 3 LPPCPKCNSEYTYED----------GGQLICPECAHEWNE 32 (112)
T ss_pred CCCCCccCCceEEec----------CceEeCchhcccccc
Confidence 346999999766553 357899999988864
No 469
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=57.74 E-value=15 Score=27.33 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=27.2
Q ss_pred CcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 187 GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 187 GtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
|.|.++..+++... .+|+++|.++.-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh
Confidence 46778888888733 5999999999999999875
No 470
>COG4640 Predicted membrane protein [Function unknown]
Probab=57.46 E-value=5.8 Score=36.48 Aligned_cols=33 Identities=18% Similarity=0.516 Sum_probs=23.2
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d 116 (232)
++.||-||+.-.. +...|+.||+.+...+...+
T Consensus 1 M~fC~kcG~qk~E-------------d~~qC~qCG~~~t~~~sqan 33 (465)
T COG4640 1 MKFCPKCGSQKAE-------------DDVQCTQCGHKFTSRQSQAN 33 (465)
T ss_pred CCccccccccccc-------------ccccccccCCcCCchhhhhh
Confidence 3679999964331 24559999999888665544
No 471
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=57.29 E-value=3.4 Score=36.70 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=24.0
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
-..||.|+..+...+ +..+...|+.|++.+..
T Consensus 38 w~kc~~C~~~~~~~~--------l~~~~~vcp~c~~h~rl 69 (296)
T CHL00174 38 WVQCENCYGLNYKKF--------LKSKMNICEQCGYHLKM 69 (296)
T ss_pred eeECCCccchhhHHH--------HHHcCCCCCCCCCCcCC
Confidence 567999999766543 34557899999988775
No 472
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.28 E-value=4.6 Score=30.98 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred cccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~ 110 (232)
.-+||.||+--.+.+. -+-.=.|..||.-|.-
T Consensus 21 ~grCP~CGeGrLF~gF--------LK~~p~C~aCG~dyg~ 52 (126)
T COG5349 21 RGRCPRCGEGRLFRGF--------LKVVPACEACGLDYGF 52 (126)
T ss_pred cCCCCCCCCchhhhhh--------cccCchhhhccccccC
Confidence 4589999984333321 2234489999988765
No 473
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=57.18 E-value=6.8 Score=29.58 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=20.2
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
.+..||.|++|-+...- . -.--.+.|..||.
T Consensus 79 ~yVlC~~C~spdT~l~k---~---~r~~~l~C~aCGa 109 (110)
T smart00653 79 EYVLCPECGSPDTELIK---E---NRLFFLKCEACGA 109 (110)
T ss_pred hcEECCCCCCCCcEEEE---e---CCeEEEEccccCC
Confidence 56899999997543210 0 0113679999986
No 474
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=57.09 E-value=6.3 Score=26.33 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=23.8
Q ss_pred cccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
+.+..+-.+.|| ||..+...- ..-.......+|++|...
T Consensus 15 ~~e~~~ftyPCP-CGDRFeIsL----eDl~~GE~VArCPSCSLi 53 (67)
T COG5216 15 SREEKTFTYPCP-CGDRFEISL----EDLRNGEVVARCPSCSLI 53 (67)
T ss_pred cCCCceEEecCC-CCCEeEEEH----HHhhCCceEEEcCCceEE
Confidence 456677788999 888665331 111122346799999543
No 475
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=56.81 E-value=8.1 Score=26.83 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=22.8
Q ss_pred ccCCCCCC--Cccc-ccCCCccccccCCCceECCCCCcccccCCC
Q 026825 72 LACPICYK--PLTW-IGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (232)
Q Consensus 72 l~CPiC~~--~l~~-~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g 113 (232)
-.||.|+. .|.. .++ ......|-.||.....+..
T Consensus 9 a~CP~C~~~D~i~~~~e~--------~ve~vECV~CGy~e~~~~~ 45 (71)
T PF09526_consen 9 AVCPKCQAMDTIMMWREN--------GVEYVECVECGYTERQPDQ 45 (71)
T ss_pred ccCCCCcCccEEEEEEeC--------CceEEEecCCCCeeccCCc
Confidence 47999998 3332 211 1357899999998766655
No 476
>PRK06172 short chain dehydrogenase; Provisional
Probab=56.79 E-value=43 Score=27.77 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++++|-.|++.| .+...|++.|. +|+.++-++.-++...+.+.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~ 53 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIRE 53 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 4678999997655 45556666677 899999998776666555543
No 477
>PHA02942 putative transposase; Provisional
Probab=56.70 E-value=8.6 Score=35.36 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=19.1
Q ss_pred CcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (232)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (232)
..-.||.||+..... ....+.|+.||..
T Consensus 324 TSq~Cs~CG~~~~~l----------~~r~f~C~~CG~~ 351 (383)
T PHA02942 324 SSVSCPKCGHKMVEI----------AHRYFHCPSCGYE 351 (383)
T ss_pred CCccCCCCCCccCcC----------CCCEEECCCCCCE
Confidence 346899999843211 1247899999876
No 478
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.64 E-value=3.8 Score=26.25 Aligned_cols=18 Identities=28% Similarity=0.942 Sum_probs=13.7
Q ss_pred ccCCcccCCCCCCCcccc
Q 026825 67 TSKNVLACPICYKPLTWI 84 (232)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~ 84 (232)
..+..-+||+|+.|+.+.
T Consensus 8 a~lp~KICpvCqRPFsWR 25 (54)
T COG4338 8 ATLPDKICPVCQRPFSWR 25 (54)
T ss_pred cccchhhhhhhcCchHHH
Confidence 345567899999998754
No 479
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=56.44 E-value=42 Score=28.69 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 176 VLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 176 ~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.++.+||-+|+| .|.++..+++. |. .+|+++|.++.-++.+++.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSF 164 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc
Confidence 467899999875 34555556655 54 2499999999888877663
No 480
>PRK05876 short chain dehydrogenase; Provisional
Probab=55.96 E-value=50 Score=28.21 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
.++.+|-.|.+.| .++..|++.|. +|+.+|.++.-++...+.+.
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~ 51 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLR 51 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 4678998888766 45556666687 89999999877776665554
No 481
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=55.89 E-value=31 Score=29.27 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=50.0
Q ss_pred CcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCC
Q 026825 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK 229 (232)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~ 229 (232)
+...++..+...|....+-.+|-+|-|-..++......| ++.+-+|-++..+..++++.........
T Consensus 23 ~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p~leay~V 89 (225)
T TIGR01627 23 LMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPPNTRIYSV 89 (225)
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCCcceEEEE
Confidence 345667777777777777999999988887665544444 4899999999999999988765444333
No 482
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=55.83 E-value=8.8 Score=37.09 Aligned_cols=41 Identities=17% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCcccCCCCCCC--cccccCCCcccc-ccCCCceECCCCCccccc
Q 026825 69 KNVLACPICYKP--LTWIGDSSLSIE-SAAGSSLQCNTCKKTYSG 110 (232)
Q Consensus 69 ~~~l~CPiC~~~--l~~~~~~~~~~~-~~~~~~l~C~~C~~~y~~ 110 (232)
.-...||.|++. |.+.+. ..+.+ ....-.+.|+.||.....
T Consensus 198 ~~~vpCPhCg~~~~l~~~~l-~w~~~~~~~~a~y~C~~Cg~~i~e 241 (557)
T PF05876_consen 198 RYYVPCPHCGEEQVLEWENL-KWDKGEAPETARYVCPHCGCEIEE 241 (557)
T ss_pred EEEccCCCCCCCccccccce-eecCCCCccceEEECCCCcCCCCH
Confidence 578999999983 333321 11111 233346899999988765
No 483
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=55.74 E-value=49 Score=29.62 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 174 KPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 174 ~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
...++.+||-+|+| .|.++..+++. |. .+|+++|.+++-++.+++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh
Confidence 34558899999986 35566666665 43 2799999999998888653
No 484
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=55.61 E-value=69 Score=27.65 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226 (232)
Q Consensus 176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~ 226 (232)
..+++||=+|= --..+..++-.+...+|+.+|+++.+++.-++.+++.+.
T Consensus 43 L~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl 92 (243)
T PF01861_consen 43 LEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL 92 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred ccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence 35899999983 224555555556567999999999999999999887763
No 485
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=55.52 E-value=27 Score=25.43 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCcChHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHh
Q 026825 186 CGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFV 221 (232)
Q Consensus 186 CGtG~~~~~la~~----g~~~~VvGvD~S~~ml~~A~~~~ 221 (232)
||.|.++..+++. +. .|+.+|.+++-++.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~--~vvvid~d~~~~~~~~~~~ 41 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGI--DVVVIDRDPERVEELREEG 41 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHTT
T ss_pred EcCCHHHHHHHHHHHhCCC--EEEEEECCcHHHHHHHhcc
Confidence 4556666655554 43 8999999999988887653
No 486
>PLN02740 Alcohol dehydrogenase-like
Probab=55.14 E-value=44 Score=30.11 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825 174 KPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYE 219 (232)
Q Consensus 174 ~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~ 219 (232)
...++.+||=+|+| .|..+..+++. |. .+|+++|.+++-++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH
Confidence 34558899999976 34555556655 43 269999999999988865
No 487
>PLN00209 ribosomal protein S27; Provisional
Probab=54.94 E-value=10 Score=27.31 Aligned_cols=41 Identities=12% Similarity=0.292 Sum_probs=28.4
Q ss_pred cccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCc
Q 026825 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (232)
Q Consensus 66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~ 114 (232)
++..-...||-|++....-++ ....+.|..|+.....+.|-
T Consensus 31 nS~Fm~VkCp~C~n~q~VFSh--------A~t~V~C~~Cg~~L~~PTGG 71 (86)
T PLN00209 31 NSFFMDVKCQGCFNITTVFSH--------SQTVVVCGSCQTVLCQPTGG 71 (86)
T ss_pred CCEEEEEECCCCCCeeEEEec--------CceEEEccccCCEeeccCCC
Confidence 344455789999995443332 34578999999998776554
No 488
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=54.89 E-value=5.6 Score=22.42 Aligned_cols=27 Identities=33% Similarity=0.763 Sum_probs=14.3
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (232)
.||.|+..+..... ..+....|+.|..
T Consensus 3 ~C~rC~~~~~~~~~-------~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 3 KCPRCWNYIEDIGI-------NGRSTYLCPRCQK 29 (30)
T ss_dssp B-TTT--BBEEEEE-------TTEEEEE-TTTCC
T ss_pred cCccCCCcceEeEe-------cCCCCeECcCCcC
Confidence 69999997654321 1345688999854
No 489
>PLN02780 ketoreductase/ oxidoreductase
Probab=54.51 E-value=37 Score=30.01 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.+..+|-.|++.| .++..++++|. +|+.++-+++.++...+.+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHH
Confidence 3689999998776 56667777787 899999999988877766643
No 490
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=54.47 E-value=9.2 Score=31.41 Aligned_cols=27 Identities=30% Similarity=0.710 Sum_probs=22.0
Q ss_pred cCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (232)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~ 109 (232)
.|+.|+.++.... +..+.|+.|+..+.
T Consensus 151 ~~~~~g~~~~~~~----------~~~~~c~~~~~~e~ 177 (189)
T PRK09521 151 MCSRCRTPLVKKG----------ENELKCPNCGNIET 177 (189)
T ss_pred EccccCCceEECC----------CCEEECCCCCCEEe
Confidence 5999999987653 46899999998765
No 491
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=54.33 E-value=49 Score=27.60 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~ 222 (232)
.++++|-.|++.| .+...+++.|. +|+.++.++..++...+.+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~ 56 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQ 56 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 4789999997766 44555666677 89999998888776655544
No 492
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=54.20 E-value=48 Score=27.41 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
+++++|=.|+..| .+...|++.|. +|+++|-+...++...+.+.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHh
Confidence 5789999996544 34445555576 999999998777666655544
No 493
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=54.15 E-value=47 Score=29.25 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=33.6
Q ss_pred cCCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825 173 LKPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 173 l~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
....++.+||-.|+| .|.++..+++. |. +|+++|.+++-++.|++.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~--~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA--TVHVMTRGAAARRLALAL 208 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHh
Confidence 344568899999975 34555556655 54 899999999988888764
No 494
>PRK07062 short chain dehydrogenase; Provisional
Probab=53.61 E-value=47 Score=27.80 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++.+|-.|++.| .+...|++.|. +|+.++.+++-++.+.+.+.+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~ 54 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLRE 54 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 4688999998766 45556666677 899999998877776665543
No 495
>PRK06057 short chain dehydrogenase; Provisional
Probab=53.25 E-value=46 Score=27.74 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~ 220 (232)
.+++||-+|++.| .+...++++|+ +|+++|.++.-++...+.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~ 50 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDPEAGKAAADE 50 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHH
Confidence 4689999998655 44555666677 999999988766555443
No 496
>PRK06125 short chain dehydrogenase; Provisional
Probab=53.25 E-value=56 Score=27.29 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (232)
Q Consensus 177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~ 223 (232)
.++++|=.|++.| .+...|++.|. +|++++.+++.++.+.+.+..
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~ 53 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRA 53 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 3678999997655 34455666677 999999999888776666543
No 497
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=53.00 E-value=19 Score=32.42 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=14.8
Q ss_pred CCCeEEEEcCCcChHHHHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAK 197 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~ 197 (232)
..-+|+|+||..|..+..+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHH
Confidence 456999999999988776544
No 498
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=52.74 E-value=7.2 Score=21.50 Aligned_cols=10 Identities=30% Similarity=1.477 Sum_probs=8.0
Q ss_pred ccCCCCCCCc
Q 026825 72 LACPICYKPL 81 (232)
Q Consensus 72 l~CPiC~~~l 81 (232)
..||+|+...
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 5799998865
No 499
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=52.71 E-value=23 Score=30.69 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 026825 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218 (232)
Q Consensus 177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~ 218 (232)
....||++|.|+|..+..++.... .+|+--|+...+.....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~~~~~~~L~~ 126 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDLPKVVENLKF 126 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc-ceeccCCchhhHHHHHH
Confidence 356899999999987777777532 38888888876654433
No 500
>PTZ00083 40S ribosomal protein S27; Provisional
Probab=52.16 E-value=12 Score=26.83 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=28.3
Q ss_pred cccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCc
Q 026825 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (232)
Q Consensus 66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~ 114 (232)
++..-...||-|++....-++ ....+.|..|+.....+.|-
T Consensus 30 nS~Fm~VkCp~C~n~q~VFSh--------A~t~V~C~~Cg~~L~~PTGG 70 (85)
T PTZ00083 30 NSYFMDVKCPGCSQITTVFSH--------AQTVVLCGGCSSQLCQPTGG 70 (85)
T ss_pred CCeEEEEECCCCCCeeEEEec--------CceEEEccccCCEeeccCCC
Confidence 344455789999995443332 34578999999998776554
Done!