BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026826
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 112 KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171
KD GGG E + TLFV GLP D RE+ +FRPF GY E L+ S+
Sbjct: 6 KDTEHTNGGGNVE-----EEVRTLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSKQ 59
Query: 172 PGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218
P G FV F S A A A +AL G RFD + + LRL+FA+
Sbjct: 60 PVG------FVTFDSRAGAEAAKNALNGIRFDPENPQT--LRLEFAK 98
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ SR P G FV F S A A A
Sbjct: 26 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSRQPVG------FVIFDSRAGAEAA 78
Query: 194 MDALQGYRFDEHDRDSVKLRLQFAR 218
+AL G RFD + + LRL+FA+
Sbjct: 79 KNALNGIRFDPENPQT--LRLEFAK 101
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 119 GGGR-------SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171
GGG+ SE L + TLFV GLP D RE+ +FRPF GY E L+ S+
Sbjct: 3 GGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQ 61
Query: 172 PGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218
P G FV F S + A A +AL G RFD + LRL+FA+
Sbjct: 62 PVG------FVSFDSRSEAEAAKNALNGIRFDPEIPQT--LRLEFAK 100
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F S + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVSFDSRSEAEAA 77
Query: 194 MDALQGYRFDEHDRDSVKLRLQFAR 218
+AL G RFD + LRL+FA+
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ +R P G FV F S A A A
Sbjct: 32 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTARQPVG------FVIFDSRAGAEAA 84
Query: 194 MDALQGYRFDEHDRDSVKLRLQFAR 218
+AL G RFD + + LRL+FA+
Sbjct: 85 KNALNGIRFDPENPQT--LRLEFAK 107
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FRPF GY E L+ S+ P G FV F + A A A
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDNRAGAEAA 73
Query: 194 MDALQGYRFDEHDRDSVKLRLQFAR 218
+AL G RFD + + LRL+FA+
Sbjct: 74 KNALNGIRFDPENPQT--LRLEFAK 96
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 17/106 (16%)
Query: 108 GPSAKDRALG-------LGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK 160
GP+A ++ G LG E P PP+ + LF++ LP++ + + +F+ + G++
Sbjct: 128 GPNAAAQSNGTGYQASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGFR 185
Query: 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206
EVR++ + PG + FV++ + + AM ALQG++ ++
Sbjct: 186 EVRMIEAK---PG-----IAFVEYEDDSQSMVAMQALQGFKITPYN 223
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 17/106 (16%)
Query: 108 GPSAKDRALG-------LGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK 160
GP+A ++ G LG E P PP+ + LF++ LP++ + + +F+ + G++
Sbjct: 128 GPNAAAQSNGTGYQASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGFR 185
Query: 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206
EVR++ + PG + FV++ + + AM ALQG++ ++
Sbjct: 186 EVRMIEAK---PG-----IAFVEYEDDSQSMVAMQALQGFKITPYN 223
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 117 GLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDP 176
G+ E P PP+ + LFV+ LP + + + +F + G+KEVR++ + PG
Sbjct: 163 GMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK---PG--- 214
Query: 177 LILCFVDFVSPAHAATAMDALQGYRFDEHD 206
+ FV+F + AM LQG++ ++
Sbjct: 215 --IAFVEFADEMQSTVAMQGLQGFKIQQNQ 242
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218
A A DALQG++ +++ +++ FA+
Sbjct: 255 VQAGAARDALQGFKITQNN----AMKISFAK 281
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218
A A DALQG++ +++ +++ FA+
Sbjct: 255 VQAGAARDALQGFKITQNN----AMKISFAK 281
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 210 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 259
Query: 188 AHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218
A A DALQG++ +++ +++ FA+
Sbjct: 260 VQAGAARDALQGFKITQNN----AMKISFAK 286
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218
A A DALQG++ +++ +++ FA+
Sbjct: 255 VQAGAARDALQGFKITQNN----AMKISFAK 281
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV +RH + FV+F +
Sbjct: 139 PPN--QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP--NRHD------IAFVEFTTE 188
Query: 188 AHAATAMDALQGYR 201
+ A +ALQG++
Sbjct: 189 LQSNAAKEALQGFK 202
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 117 GLGGGRSEVP-LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGD 175
G +VP PP+ LF+ LP + + ++ +F F G+KEVRLV RH
Sbjct: 136 GTAAPNPQVPDYPPN--YILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVP--GRHD--- 188
Query: 176 PLILCFVDFVSPAHAATAMDALQGYR 201
+ FV+F + A A DALQG++
Sbjct: 189 ---IAFVEFENDGQAGAARDALQGFK 211
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 124 EVP-LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182
+VP PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV
Sbjct: 143 QVPDYPPNY--ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVP--GRHD------IAFV 192
Query: 183 DFVSPAHAATAMDALQGYR 201
+F + A A DALQG++
Sbjct: 193 EFENDGQAGAARDALQGFK 211
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ LF+ LP + + ++ +F F G+KEVRLV RH + FV+F +
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHD------IAFVEFDNE 254
Query: 188 AHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218
A A ++LQG++ + S +++ FA+
Sbjct: 255 VQAGAARESLQGFKITQ----SNSMKISFAK 281
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP 187
PP+ TLFVE LP C ++ +F F G+KEV +V ES+ + F++F
Sbjct: 164 PPN--KTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMV--ESKKG------IAFIEFEDE 213
Query: 188 AHAATAMDALQGYR 201
+ AM LQ ++
Sbjct: 214 IKSGFAMTNLQHFK 227
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS 186
+PP+ + LF++ LP + + + +F + G+KE+R++ + PG + FV++
Sbjct: 154 MPPN--NILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAK---PG-----IAFVEYED 203
Query: 187 PAHAATAMDALQGYRFDEHD 206
A+ AM LQG++ +
Sbjct: 204 DVQASIAMQPLQGFKITPQN 223
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 44.3 bits (103), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATA 193
TLFV GLP D RE+ +FR + GY+ L P + FV F + A A A
Sbjct: 452 TLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASP--VGFVTFHTRAGAEAA 509
Query: 194 MDALQGYRFDEHDRDSVKLRLQFAR 218
LQG RFD ++ RL+FA+
Sbjct: 510 KQDLQGVRFDPDMPQTI--RLEFAK 532
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS 186
+PP+ + LF+ LP + + + +F + G+KE+R++ + PG + FV++
Sbjct: 151 MPPN--NILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAK---PG-----IAFVEYED 200
Query: 187 PAHAATAMDALQGYRFDEHD 206
++ AM ALQG++ +
Sbjct: 201 DVQSSMAMQALQGFKITPQN 220
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192
+T++V LP S E+ +F VGYK + +K G P +CFV+F + +A
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTK-----GNGP--MCFVEFENIPYAME 478
Query: 193 AMDALQGYRFDEHDRDSVK--LRLQFARYP 220
A+ LQG S+K +RL F++ P
Sbjct: 479 ALKNLQGVCLS----SSIKGGIRLSFSKNP 504
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 124 EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVD 183
E+ +P ++ LFV+ LP + + + +F + G+KEVR+V + PG + FV+
Sbjct: 173 EIIVP---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAK---PG-----IAFVE 221
Query: 184 FVSPAHAATAMDALQGYRFDEHDR 207
+ A AM+ LQG++ + ++
Sbjct: 222 YGDEGQATAAMNHLQGFKITKDNQ 245
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 124 EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVD 183
E+ +P ++ LFV+ LP + + + +F + G+KEVR+V + PG + FV+
Sbjct: 173 EIIVP---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAK---PG-----IAFVE 221
Query: 184 FVSPAHAATAMDALQGYRFDEHDR 207
+ A AM+ LQG++ + ++
Sbjct: 222 YGDEGQATAAMNHLQGFKITKDNQ 245
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
+ V+ LP + +R++V +F F K VR+ K + G FV+FV P A AM
Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG----FAFVEFVLPKEAENAM 795
Query: 195 DALQG 199
D LQG
Sbjct: 796 DQLQG 800
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192
+TL+V LPSD + +E+ +F G++ + +K + G +CFV+F + A
Sbjct: 538 NTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFATR 597
Query: 193 AMDALQGYRFDEHDRDSVK----LRLQFARYP-GARSGGGHRG 230
A+ L G + R +V +RL F++ P G R RG
Sbjct: 598 ALAELYGRQL---PRSTVSSKGGIRLSFSKNPLGVRGPNSRRG 637
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA 190
+++ LFV P D E+ IF PF KEV++++ FV+F A
Sbjct: 123 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNG-----------FAFVEFEEAESA 171
Query: 191 ATAMDALQGYRFDEHDRDSVKLRLQFARY 219
A A++ + G F + V +L RY
Sbjct: 172 AKAIEEVHGKSFANQPLEVVYSKLPAKRY 200
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 41.2 bits (95), Expect = 0.006, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-ESRHPGGD-PLILCFVDFVSPA 188
A++TLF++ L + + + FRP G+ R+ +K + ++PG + F DF + A
Sbjct: 590 ATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKA 649
Query: 189 HAATAMDALQGYRFDEH 205
A A+ + GY D H
Sbjct: 650 QAQAALAVMNGYTLDRH 666
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192
+ + ++ LP ++++V +F + + VR+ K R G F DFVS A
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARG----FGFADFVSAREAEN 752
Query: 193 AMDALQ 198
AMDAL+
Sbjct: 753 AMDALK 758
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 97 PRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPF 156
PR G G P P G GGRS D ++L V L DC + ++ F F
Sbjct: 11 PRGYGRRGRSPSPR------GRYGGRSR-----DLPTSLLVRNLRHDCRQEDLRKSFEQF 59
Query: 157 VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY 200
K++ L + GDP FV F+ PA AA A + GY
Sbjct: 60 GPVKDIYLPRD---YYTGDPRGFGFVQFMDPADAADAKHHMDGY 100
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
+ V+ LP + +R++V +F F K VR+ K + G FV+F+ P A AM
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG----FAFVEFLLPKEAENAM 809
Query: 195 DALQG 199
D LQG
Sbjct: 810 DQLQG 814
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191
S + V+ LP + +R++V +F F K VR+ K + G FV+F+ P A
Sbjct: 762 SGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG----FAFVEFLLPKEAE 817
Query: 192 TAMDALQG 199
AMD L G
Sbjct: 818 NAMDQLHG 825
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196
V+ LP + +R++V +F F K VR+ K + G FV+F+ P+ A AMD
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG----FAFVEFLLPSEAENAMDQ 771
Query: 197 LQG 199
LQG
Sbjct: 772 LQG 774
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-ESRHPGGD-PLILCFVDFVS 186
P +STLFV+ L + +F+P G+ R+ +K + + PG + FVDF +
Sbjct: 593 PVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRT 652
Query: 187 PAHAATAMDALQGYRFDEHD 206
A A A+ A+ GY+ D+H+
Sbjct: 653 KAQAQAALAAMDGYKLDQHE 672
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192
+ + ++ LP ++++V +F + + VR+ K R G F DFVS A
Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARG----FGFADFVSAREAEN 757
Query: 193 AMDALQ 198
AMDAL+
Sbjct: 758 AMDALK 763
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
++V LPSD +++ +F + +E+ L ++ P FV F P A A+
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVP------FAFVRFEDPRDAEDAI 70
Query: 195 DALQGYRFDEHDRDSVKLRLQFARYPGARSGGGHRGKR 232
GY D +LR++F R G R GG RG R
Sbjct: 71 YGRNGY-----DYGQCRLRVEFPRTYGGR-GGWPRGAR 102
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 38.5 bits (88), Expect = 0.037, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
+FV L CS+ E+ +F PF K+VRLV K ++ G + +V+F P A A+
Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKG----IAYVEFEKPGEAQRAV 781
Query: 195 DALQGYRF 202
G F
Sbjct: 782 AGRDGCLF 789
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLI---LCFVDFVSPAH 189
+TL+V LP D + +E+ +F G++ + +K + H G+ +CFV+F +
Sbjct: 533 NTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEFEDVSF 592
Query: 190 AATAMDALQGYRFDEHDRDSVK----LRLQFARYPGARSGGGHRGK 231
A A+ L G + H R S+ +RL F++ P G R K
Sbjct: 593 ATRALAELYGSQL-PHPRPSLNNKGGIRLSFSKNPLGVRGSNSRSK 637
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 38.1 bits (87), Expect = 0.054, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
LF+ GLP C++ E+ I + K++RLV+ + P G L +V++ + + A+ A+
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKG----LAYVEYENESQASQAV 858
Query: 195 DALQGYRFDEH 205
+ G E+
Sbjct: 859 MKMDGMTIKEN 869
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 37.7 bits (86), Expect = 0.062, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
LF+ GLP C++ E+ I + K++RLV+ + P G L +V++ + + A+ A+
Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKG----LAYVEYENESQASQAV 876
Query: 195 DALQGYRFDEH 205
+ G E+
Sbjct: 877 MKMDGMTIKEN 887
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRL-VSKESRHPGGDPLILCFVDFVSPAHAATA 193
LF+ LP S E+ F F K+V + + K+++ G L FV F PAHA A
Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKG----LAFVSFSDPAHALAA 371
Query: 194 MDALQGYRF 202
A G F
Sbjct: 372 YRAKDGSTF 380
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
LF+ GLP C++ E+ I + K++RLV+ + P G L +V++ + + A+ A+
Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKG----LAYVEYENESQASQAV 858
Query: 195 DALQGYRFDEH 205
+ G E+
Sbjct: 859 MKMDGMTIREN 869
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-ESRHPGGD-PLILCFVDFVSPAH 189
++T++V+ L + E +F+P GY + +K + + PG + FV+F A
Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677
Query: 190 AATAMDALQGYRFDEH 205
A AM A+ G+ D H
Sbjct: 678 AVAAMHAMNGFVLDGH 693
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
++V LP+D +++ +F + +E+ L ++ P FV F P A A+
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVP------FAFVRFEDPRDAEDAI 69
Query: 195 DALQGYRFDEHDRDSVKLRLQFARYPGARSG 225
GY D +LR++F R G R G
Sbjct: 70 YGRNGY-----DYGQCRLRVEFPRAYGGRGG 95
>sp|Q9UT83|MUG28_SCHPO Meiotically up-regulated gene 28 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug28 PE=1 SV=1
Length = 609
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHP--GGDPLILCFVDFVSPAHAA 191
+++V LPS C ++ +F PF + + ++S++ P + F+ F + A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 192 TAMDALQGYRFD 203
A+ +L G F
Sbjct: 81 NAIASLNGSSFQ 92
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 36.6 bits (83), Expect = 0.14, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 109 PSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168
P +++ GG+ P SS + ++ LP + + +E+ +F + + VR+ K
Sbjct: 776 PENSKQSIKSNGGQPNKP-----SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKK- 829
Query: 169 SRHPGGDPLILCFVDFVSPAHAATAMDALQGYRF 202
P G FV+F++ A AM+AL F
Sbjct: 830 ---PNGGHRGFGFVEFLTEEEAKNAMEALGNSHF 860
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194
++V LP D ++V +F + +++ L ++ GG P FV+F P A A+
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRR----GGPPF--AFVEFEDPRDAEDAV 70
Query: 195 DALQGYRFDEHDRDSVKLRLQFAR 218
A GY D D +LR++F R
Sbjct: 71 YARDGY-----DYDGYRLRVEFPR 89
>sp|B4KCD5|NCBP2_DROMO Nuclear cap-binding protein subunit 2 OS=Drosophila mojavensis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL 179
G RSE SSTL+V L + ++ +F +VR++ P
Sbjct: 17 GSRSEQERSLRDSSTLYVGNLSFYTTEEQIHELFSRC---GDVRIIVMGLDKYKKTPCGF 73
Query: 180 CFVDFVSPAHAATAMDALQGYRFDE 204
CFV++ + A A AM + G R D+
Sbjct: 74 CFVEYYTRAEAEAAMRFVNGTRLDD 98
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 115 ALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGG 174
+LG GG + P +++ L V LP D + RE+ +FR R++ + G
Sbjct: 107 SLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD---YKTG 163
Query: 175 DPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPGARS 224
FVDF S + A+ L G +L++ +AR PG S
Sbjct: 164 YSFGYAFVDFTSEMDSQRAIKVLNGITVRNK-----RLKVSYAR-PGGES 207
>sp|Q5NVC8|CELF4_PONAB CUGBP Elav-like family member 4 OS=Pongo abelii GN=CELF4 PE=2 SV=2
Length = 486
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL 179
GG S + PP LFV L S +V +F F +E ++ R P G+
Sbjct: 139 GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL----RGPDGNSKGC 194
Query: 180 CFVDFVSPAHAATAMDALQG------------YRFDEHDRDSVKLRLQ 215
FV + S A A A++AL G +F + D++ R+Q
Sbjct: 195 AFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 242
>sp|Q7TSY6|CELF4_MOUSE CUGBP Elav-like family member 4 OS=Mus musculus GN=Celf4 PE=1 SV=2
Length = 486
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL 179
GG S + PP LFV L S +V +F F +E ++ R P G+
Sbjct: 139 GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL----RGPDGNSKGC 194
Query: 180 CFVDFVSPAHAATAMDALQG------------YRFDEHDRDSVKLRLQ 215
FV + S A A A++AL G +F + D++ R+Q
Sbjct: 195 AFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 242
>sp|Q9BZC1|CELF4_HUMAN CUGBP Elav-like family member 4 OS=Homo sapiens GN=CELF4 PE=1 SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL 179
GG S + PP LFV L S +V +F F +E ++ R P G+
Sbjct: 139 GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL----RGPDGNSKGC 194
Query: 180 CFVDFVSPAHAATAMDALQG------------YRFDEHDRDSVKLRLQ 215
FV + S A A A++AL G +F + D++ R+Q
Sbjct: 195 AFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,581,959
Number of Sequences: 539616
Number of extensions: 4501457
Number of successful extensions: 9835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 9740
Number of HSP's gapped (non-prelim): 168
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)