Query 026826
Match_columns 232
No_of_seqs 329 out of 1396
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 9.1E-19 2E-23 141.0 12.9 81 132-220 34-114 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.8E-17 1.2E-21 146.3 12.2 83 132-222 269-351 (352)
3 TIGR01659 sex-lethal sex-letha 99.7 3.3E-16 7.2E-21 142.6 14.5 82 131-220 106-187 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.4E-16 3E-21 143.8 11.0 81 132-220 3-83 (352)
5 PF00076 RRM_1: RNA recognitio 99.7 3.9E-16 8.5E-21 108.3 7.7 70 135-213 1-70 (70)
6 KOG0107 Alternative splicing f 99.7 4.5E-16 9.8E-21 127.0 9.0 78 132-222 10-87 (195)
7 KOG0121 Nuclear cap-binding pr 99.6 6.7E-16 1.5E-20 120.3 7.0 80 131-218 35-114 (153)
8 KOG0122 Translation initiation 99.6 1.4E-15 3.1E-20 129.7 9.0 81 132-220 189-269 (270)
9 KOG0105 Alternative splicing f 99.6 1.4E-15 3.1E-20 125.3 7.9 78 132-220 6-83 (241)
10 TIGR01659 sex-lethal sex-letha 99.6 4.9E-15 1.1E-19 135.0 11.1 83 132-220 193-275 (346)
11 KOG0148 Apoptosis-promoting RN 99.6 2.9E-15 6.3E-20 129.5 7.2 163 33-220 69-238 (321)
12 KOG0113 U1 small nuclear ribon 99.5 4.8E-14 1E-18 123.3 11.2 86 127-220 96-181 (335)
13 KOG0114 Predicted RNA-binding 99.5 5.6E-14 1.2E-18 105.9 9.8 86 122-218 8-93 (124)
14 TIGR01645 half-pint poly-U bin 99.5 4E-14 8.7E-19 136.5 10.9 81 132-220 204-284 (612)
15 PLN03120 nucleic acid binding 99.5 5.5E-14 1.2E-18 122.3 10.6 76 132-219 4-79 (260)
16 PF14259 RRM_6: RNA recognitio 99.5 8.5E-14 1.8E-18 97.4 9.6 67 135-205 1-67 (70)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.5 8.3E-14 1.8E-18 131.8 11.6 82 130-219 293-374 (509)
18 TIGR01648 hnRNP-R-Q heterogene 99.5 8.5E-14 1.8E-18 133.8 11.4 74 132-221 233-308 (578)
19 TIGR01622 SF-CC1 splicing fact 99.5 8E-14 1.7E-18 130.3 10.8 80 132-219 186-265 (457)
20 TIGR01645 half-pint poly-U bin 99.5 7.1E-14 1.5E-18 134.8 10.1 80 132-219 107-186 (612)
21 KOG0130 RNA-binding protein RB 99.5 8.8E-14 1.9E-18 109.5 8.3 88 127-222 67-154 (170)
22 KOG0125 Ataxin 2-binding prote 99.5 2.8E-13 6.1E-18 119.9 11.6 80 131-220 95-174 (376)
23 KOG4207 Predicted splicing fac 99.5 9.7E-14 2.1E-18 116.2 8.1 80 132-219 13-92 (256)
24 TIGR01628 PABP-1234 polyadenyl 99.5 1.4E-13 3.1E-18 132.2 10.5 78 134-219 2-79 (562)
25 smart00362 RRM_2 RNA recogniti 99.5 3.5E-13 7.5E-18 92.1 9.2 72 134-215 1-72 (72)
26 TIGR01648 hnRNP-R-Q heterogene 99.5 1.6E-13 3.4E-18 132.0 9.9 80 129-217 55-135 (578)
27 TIGR01628 PABP-1234 polyadenyl 99.5 1.7E-13 3.7E-18 131.6 10.0 81 131-220 284-364 (562)
28 PLN03121 nucleic acid binding 99.5 3.7E-13 8.1E-18 115.7 9.8 74 132-217 5-78 (243)
29 TIGR01622 SF-CC1 splicing fact 99.4 4.6E-13 1E-17 125.2 10.8 81 131-220 88-168 (457)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4.2E-13 9.2E-18 127.1 10.6 75 132-220 2-78 (481)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 5.4E-13 1.2E-17 126.4 11.2 77 131-220 274-351 (481)
32 COG0724 RNA-binding proteins ( 99.4 6.4E-13 1.4E-17 111.9 10.0 79 132-218 115-193 (306)
33 KOG0117 Heterogeneous nuclear 99.4 8.6E-13 1.9E-17 120.7 10.8 82 130-218 81-162 (506)
34 KOG0149 Predicted RNA-binding 99.4 2.8E-13 6.1E-18 115.2 6.9 77 132-217 12-88 (247)
35 KOG0145 RNA-binding protein EL 99.4 5.2E-13 1.1E-17 115.3 8.4 81 132-220 41-121 (360)
36 KOG0126 Predicted RNA-binding 99.4 3.2E-14 6.9E-19 116.9 0.3 79 132-218 35-113 (219)
37 cd00590 RRM RRM (RNA recogniti 99.4 2.6E-12 5.7E-17 88.1 9.8 74 134-216 1-74 (74)
38 KOG0117 Heterogeneous nuclear 99.4 4.9E-13 1.1E-17 122.3 7.5 74 132-221 259-332 (506)
39 KOG0111 Cyclophilin-type pepti 99.4 2.4E-13 5.3E-18 114.8 5.0 84 131-224 9-94 (298)
40 PLN03213 repressor of silencin 99.4 1E-12 2.2E-17 121.7 9.5 76 132-219 10-87 (759)
41 smart00360 RRM RNA recognition 99.4 1.7E-12 3.8E-17 88.2 8.4 71 137-215 1-71 (71)
42 KOG0144 RNA-binding protein CU 99.4 3.6E-13 7.8E-18 122.8 5.9 86 132-223 124-209 (510)
43 KOG0109 RNA-binding protein LA 99.4 3.9E-13 8.5E-18 117.4 5.5 72 133-220 3-74 (346)
44 KOG0108 mRNA cleavage and poly 99.4 1.9E-12 4.1E-17 120.6 8.2 81 133-221 19-99 (435)
45 KOG0144 RNA-binding protein CU 99.3 3.1E-12 6.8E-17 116.7 9.3 84 132-220 34-117 (510)
46 PF13893 RRM_5: RNA recognitio 99.3 1E-11 2.2E-16 83.7 8.5 56 149-217 1-56 (56)
47 KOG0127 Nucleolar protein fibr 99.3 4.1E-12 8.9E-17 118.8 8.7 80 132-220 117-196 (678)
48 KOG0148 Apoptosis-promoting RN 99.3 4E-12 8.7E-17 110.2 8.0 82 132-221 62-143 (321)
49 KOG0131 Splicing factor 3b, su 99.3 3.7E-12 8E-17 104.8 6.4 81 130-218 7-87 (203)
50 KOG0145 RNA-binding protein EL 99.3 4E-11 8.6E-16 103.7 10.5 81 132-220 278-358 (360)
51 KOG4206 Spliceosomal protein s 99.2 3.3E-11 7.2E-16 102.0 8.4 78 132-220 9-90 (221)
52 KOG0415 Predicted peptidyl pro 99.2 2.4E-11 5.2E-16 108.8 7.1 80 132-219 239-318 (479)
53 KOG1457 RNA binding protein (c 99.2 1.9E-10 4.1E-15 97.6 11.5 88 129-220 31-118 (284)
54 KOG0109 RNA-binding protein LA 99.2 2.4E-11 5.2E-16 106.3 6.1 73 132-220 78-150 (346)
55 KOG0132 RNA polymerase II C-te 99.2 4E-11 8.6E-16 115.9 7.9 79 132-224 421-499 (894)
56 KOG0146 RNA-binding protein ET 99.2 2.1E-11 4.5E-16 105.8 5.3 82 132-221 285-366 (371)
57 KOG0127 Nucleolar protein fibr 99.1 1.8E-10 3.8E-15 108.0 8.9 81 132-220 292-378 (678)
58 KOG0153 Predicted RNA-binding 99.1 3.9E-10 8.4E-15 100.8 8.9 90 116-219 211-302 (377)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.4E-10 9.5E-15 106.5 9.7 83 131-218 408-500 (509)
60 KOG0131 Splicing factor 3b, su 99.1 2E-10 4.4E-15 94.6 6.3 83 132-222 96-179 (203)
61 KOG0123 Polyadenylate-binding 99.1 5E-10 1.1E-14 103.0 8.5 110 78-223 47-156 (369)
62 smart00361 RRM_1 RNA recogniti 99.1 7.3E-10 1.6E-14 78.2 7.5 63 146-214 2-69 (70)
63 KOG4212 RNA-binding protein hn 99.0 1E-09 2.2E-14 100.8 9.8 77 132-217 44-121 (608)
64 KOG4212 RNA-binding protein hn 99.0 1.2E-09 2.6E-14 100.3 10.2 74 131-217 535-608 (608)
65 KOG0110 RNA-binding protein (R 99.0 1.6E-10 3.5E-15 110.9 4.7 81 132-220 613-693 (725)
66 KOG0147 Transcriptional coacti 99.0 3.8E-10 8.3E-15 105.7 6.5 77 134-218 280-356 (549)
67 KOG0110 RNA-binding protein (R 99.0 7.1E-10 1.5E-14 106.5 8.2 81 134-219 517-597 (725)
68 KOG0124 Polypyrimidine tract-b 99.0 4.3E-10 9.4E-15 101.2 5.0 77 132-216 113-189 (544)
69 KOG4208 Nucleolar RNA-binding 99.0 1.4E-09 3.1E-14 91.1 7.5 80 132-219 49-129 (214)
70 KOG0146 RNA-binding protein ET 98.9 1.8E-09 3.8E-14 93.9 6.7 84 132-221 19-102 (371)
71 KOG0106 Alternative splicing f 98.8 4E-09 8.6E-14 89.9 5.3 71 134-220 3-73 (216)
72 KOG0116 RasGAP SH3 binding pro 98.8 1E-08 2.2E-13 95.3 7.8 79 132-219 288-366 (419)
73 KOG0533 RRM motif-containing p 98.8 1.6E-08 3.5E-13 87.7 8.4 80 132-220 83-162 (243)
74 KOG4454 RNA binding protein (R 98.8 2E-09 4.3E-14 91.2 2.5 77 131-217 8-84 (267)
75 KOG1457 RNA binding protein (c 98.7 7.5E-09 1.6E-13 88.0 3.9 67 132-205 210-276 (284)
76 KOG4209 Splicing factor RNPS1, 98.7 2.9E-08 6.3E-13 85.9 7.5 80 132-220 101-180 (231)
77 KOG4661 Hsp27-ERE-TATA-binding 98.7 6.2E-08 1.3E-12 91.6 10.1 81 132-220 405-485 (940)
78 KOG1548 Transcription elongati 98.7 4.1E-08 8.8E-13 87.9 8.3 83 129-220 131-221 (382)
79 KOG0123 Polyadenylate-binding 98.7 5E-08 1.1E-12 89.8 8.3 73 133-219 2-74 (369)
80 KOG0124 Polypyrimidine tract-b 98.7 5E-08 1.1E-12 88.1 6.9 173 24-220 105-290 (544)
81 KOG4206 Spliceosomal protein s 98.7 1.1E-07 2.4E-12 80.8 8.4 76 131-218 145-220 (221)
82 KOG4660 Protein Mei2, essentia 98.6 3.8E-08 8.3E-13 92.6 4.8 70 131-213 74-143 (549)
83 KOG4205 RNA-binding protein mu 98.6 5.2E-08 1.1E-12 87.5 5.2 81 131-220 5-85 (311)
84 KOG0151 Predicted splicing reg 98.6 1.9E-07 4.1E-12 90.1 9.2 80 132-219 174-256 (877)
85 PF04059 RRM_2: RNA recognitio 98.4 2.4E-06 5.1E-11 64.4 8.8 85 133-221 2-88 (97)
86 KOG4205 RNA-binding protein mu 98.3 8.6E-07 1.9E-11 79.7 5.7 81 131-220 96-176 (311)
87 KOG0226 RNA-binding proteins [ 98.2 1.2E-06 2.6E-11 75.8 4.6 77 132-216 190-266 (290)
88 KOG1190 Polypyrimidine tract-b 98.2 4.7E-06 1E-10 76.4 8.4 76 132-220 297-373 (492)
89 KOG1995 Conserved Zn-finger pr 98.2 3.7E-06 8E-11 75.8 6.6 81 132-220 66-154 (351)
90 PF11608 Limkain-b1: Limkain b 98.2 1.3E-05 2.7E-10 58.7 7.8 69 133-219 3-76 (90)
91 KOG0120 Splicing factor U2AF, 98.2 2.1E-06 4.5E-11 81.3 4.7 82 130-219 287-368 (500)
92 PF08777 RRM_3: RNA binding mo 98.1 1E-05 2.2E-10 61.8 6.7 59 133-200 2-60 (105)
93 KOG1190 Polypyrimidine tract-b 98.1 8.7E-06 1.9E-10 74.7 6.9 77 132-219 414-490 (492)
94 KOG0106 Alternative splicing f 98.0 5E-06 1.1E-10 71.0 3.2 71 131-217 98-168 (216)
95 KOG4210 Nuclear localization s 97.9 9E-06 1.9E-10 72.5 4.1 82 132-222 184-266 (285)
96 KOG1456 Heterogeneous nuclear 97.9 0.00057 1.2E-08 62.4 14.5 76 132-220 287-363 (494)
97 KOG2314 Translation initiation 97.9 3.3E-05 7.1E-10 73.4 6.7 76 132-215 58-139 (698)
98 KOG0147 Transcriptional coacti 97.8 7.2E-06 1.6E-10 77.4 1.9 78 132-218 179-256 (549)
99 KOG4211 Splicing factor hnRNP- 97.8 7E-05 1.5E-09 70.1 8.1 67 132-205 10-76 (510)
100 KOG1855 Predicted RNA-binding 97.8 3.7E-05 7.9E-10 71.0 6.0 70 131-200 230-309 (484)
101 COG5175 MOT2 Transcriptional r 97.7 0.00011 2.3E-09 66.3 7.4 82 132-218 114-201 (480)
102 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.7E-05 1.9E-09 49.7 5.0 52 133-194 2-53 (53)
103 KOG1456 Heterogeneous nuclear 97.6 0.00026 5.6E-09 64.6 8.7 78 132-220 120-199 (494)
104 KOG4211 Splicing factor hnRNP- 97.6 0.00024 5.2E-09 66.6 8.4 69 132-205 103-172 (510)
105 KOG4307 RNA binding protein RB 97.5 0.0014 3E-08 64.0 11.7 75 133-216 868-943 (944)
106 KOG0129 Predicted RNA-binding 97.4 0.00039 8.4E-09 65.6 7.0 65 132-197 259-326 (520)
107 KOG0112 Large RNA-binding prot 97.3 0.00047 1E-08 68.7 6.8 79 132-222 455-533 (975)
108 KOG0129 Predicted RNA-binding 97.2 0.0014 3.1E-08 61.9 7.8 68 125-196 363-432 (520)
109 PF08675 RNA_bind: RNA binding 97.1 0.0035 7.7E-08 45.8 7.8 55 132-198 9-63 (87)
110 KOG0120 Splicing factor U2AF, 97.1 0.0019 4.2E-08 61.5 8.0 63 149-217 426-489 (500)
111 KOG2416 Acinus (induces apopto 97.1 0.00058 1.3E-08 65.5 4.4 78 130-218 442-520 (718)
112 KOG0128 RNA-binding protein SA 97.0 0.00032 7E-09 69.5 2.1 79 132-219 736-814 (881)
113 KOG4676 Splicing factor, argin 97.0 0.00098 2.1E-08 61.2 4.8 71 134-205 9-79 (479)
114 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0061 1.3E-07 46.2 7.8 78 132-218 6-90 (100)
115 KOG4849 mRNA cleavage factor I 96.9 0.0011 2.3E-08 60.2 4.0 71 133-206 81-153 (498)
116 KOG2193 IGF-II mRNA-binding pr 96.8 0.00086 1.9E-08 62.1 3.1 78 133-224 2-80 (584)
117 KOG3152 TBP-binding protein, a 96.7 0.0011 2.4E-08 57.7 2.7 75 132-206 74-157 (278)
118 KOG1548 Transcription elongati 96.7 0.0062 1.3E-07 55.2 7.5 75 131-217 264-349 (382)
119 KOG0105 Alternative splicing f 96.6 0.045 9.7E-07 46.0 11.7 63 132-204 115-177 (241)
120 KOG1365 RNA-binding protein Fu 96.6 0.013 2.9E-07 53.8 9.0 60 133-196 162-225 (508)
121 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0088 1.9E-07 49.7 6.7 88 132-220 7-98 (176)
122 PF10309 DUF2414: Protein of u 96.3 0.016 3.5E-07 40.0 6.1 54 133-197 6-62 (62)
123 PF08952 DUF1866: Domain of un 96.3 0.015 3.3E-07 46.8 6.8 54 148-218 52-105 (146)
124 KOG0112 Large RNA-binding prot 96.1 0.0012 2.7E-08 65.8 -0.5 78 131-217 371-448 (975)
125 KOG1365 RNA-binding protein Fu 96.0 0.017 3.7E-07 53.2 6.2 70 132-205 280-352 (508)
126 KOG4307 RNA binding protein RB 95.9 0.0098 2.1E-07 58.3 4.7 82 126-216 428-510 (944)
127 KOG2202 U2 snRNP splicing fact 95.8 0.0042 9.1E-08 54.1 1.6 55 155-218 92-146 (260)
128 KOG0115 RNA-binding protein p5 95.6 0.013 2.9E-07 51.1 3.7 62 133-198 32-93 (275)
129 KOG0128 RNA-binding protein SA 95.4 0.0013 2.8E-08 65.3 -3.6 67 132-201 667-733 (881)
130 PF07576 BRAP2: BRCA1-associat 95.3 0.38 8.2E-06 37.0 10.5 72 132-208 13-85 (110)
131 KOG1996 mRNA splicing factor [ 95.2 0.057 1.2E-06 48.2 6.4 65 146-217 300-364 (378)
132 KOG2068 MOT2 transcription fac 95.1 0.011 2.4E-07 53.3 1.7 81 132-219 77-162 (327)
133 PF04847 Calcipressin: Calcipr 95.0 0.063 1.4E-06 45.0 6.0 62 145-220 8-71 (184)
134 KOG4574 RNA-binding protein (c 94.8 0.017 3.6E-07 57.7 2.3 75 134-220 300-374 (1007)
135 KOG2253 U1 snRNP complex, subu 94.6 0.066 1.4E-06 52.3 5.6 63 131-205 39-101 (668)
136 PF03880 DbpA: DbpA RNA bindin 94.4 0.23 5E-06 35.1 6.8 67 134-217 2-74 (74)
137 KOG2591 c-Mpl binding protein, 93.9 0.19 4.2E-06 48.4 7.0 64 132-205 175-247 (684)
138 PF15023 DUF4523: Protein of u 93.5 0.34 7.3E-06 39.2 6.8 71 132-218 86-160 (166)
139 KOG4660 Protein Mei2, essentia 93.4 0.14 3E-06 49.1 5.3 85 133-221 362-474 (549)
140 KOG4285 Mitotic phosphoprotein 91.5 0.34 7.5E-06 43.5 4.9 60 135-205 200-259 (350)
141 KOG0804 Cytoplasmic Zn-finger 91.1 1.1 2.3E-05 42.4 8.0 73 132-209 74-147 (493)
142 PF11767 SET_assoc: Histone ly 88.5 2.3 4.9E-05 29.7 6.2 51 143-205 11-61 (66)
143 KOG2135 Proteins containing th 87.6 0.35 7.7E-06 45.7 2.1 73 132-219 372-445 (526)
144 KOG4210 Nuclear localization s 87.4 0.41 8.8E-06 42.8 2.4 80 132-219 88-167 (285)
145 KOG2891 Surface glycoprotein [ 83.5 0.84 1.8E-05 40.8 2.3 89 132-220 149-268 (445)
146 KOG2318 Uncharacterized conser 79.6 10 0.00022 37.1 8.3 76 130-205 172-296 (650)
147 KOG2193 IGF-II mRNA-binding pr 74.2 0.14 3.1E-06 47.8 -5.5 75 132-217 80-154 (584)
148 KOG4676 Splicing factor, argin 72.1 0.57 1.2E-05 43.5 -2.1 66 132-205 151-216 (479)
149 KOG4019 Calcineurin-mediated s 68.4 4.4 9.5E-05 34.0 2.5 74 133-219 11-89 (193)
150 KOG4454 RNA binding protein (R 67.9 1.5 3.2E-05 37.9 -0.4 70 132-205 80-153 (267)
151 PF03468 XS: XS domain; Inter 63.5 3.8 8.2E-05 31.7 1.2 55 134-194 10-74 (116)
152 KOG4410 5-formyltetrahydrofola 57.5 11 0.00025 33.8 3.2 50 132-189 330-379 (396)
153 COG0724 RNA-binding proteins ( 55.8 19 0.00042 29.4 4.3 38 131-168 224-261 (306)
154 KOG4483 Uncharacterized conser 50.3 29 0.00062 32.7 4.7 54 132-195 391-445 (528)
155 KOG2295 C2H2 Zn-finger protein 50.2 2.7 5.9E-05 40.7 -1.9 70 132-205 231-301 (648)
156 PF14893 PNMA: PNMA 47.5 15 0.00033 33.6 2.6 29 132-160 18-50 (331)
157 KOG1295 Nonsense-mediated deca 44.8 30 0.00065 32.2 4.0 73 132-205 7-80 (376)
158 PRK11634 ATP-dependent RNA hel 43.7 90 0.002 31.0 7.5 69 133-218 487-561 (629)
159 TIGR00110 ilvD dihydroxy-acid 39.2 1.3E+02 0.0028 29.5 7.5 39 179-228 385-423 (535)
160 KOG4008 rRNA processing protei 37.3 17 0.00037 31.7 1.1 32 132-163 40-71 (261)
161 PRK06131 dihydroxy-acid dehydr 37.1 1.7E+02 0.0037 29.0 8.0 40 179-229 403-444 (571)
162 PF00403 HMA: Heavy-metal-asso 31.6 1.5E+02 0.0032 19.2 6.0 54 134-196 1-58 (62)
163 PF10567 Nab6_mRNP_bdg: RNA-re 28.8 85 0.0018 28.4 4.1 82 132-218 15-106 (309)
164 PRK14548 50S ribosomal protein 28.5 1.3E+02 0.0028 21.9 4.4 56 135-196 23-80 (84)
165 PF11411 DNA_ligase_IV: DNA li 28.0 38 0.00081 20.8 1.2 16 142-157 19-34 (36)
166 KOG2187 tRNA uracil-5-methyltr 27.3 51 0.0011 32.0 2.6 36 179-219 65-100 (534)
167 PRK13016 dihydroxy-acid dehydr 27.1 2.9E+02 0.0062 27.4 7.7 41 179-229 408-449 (577)
168 PRK00911 dihydroxy-acid dehydr 27.1 2.6E+02 0.0057 27.5 7.4 39 179-228 400-438 (552)
169 TIGR03636 L23_arch archaeal ri 26.6 1.6E+02 0.0034 21.0 4.5 55 135-195 16-72 (77)
170 PRK12448 dihydroxy-acid dehydr 26.3 2.3E+02 0.005 28.3 6.9 37 182-228 452-488 (615)
171 PF15513 DUF4651: Domain of un 25.6 1.3E+02 0.0027 20.8 3.6 20 147-166 9-28 (62)
172 KOG4365 Uncharacterized conser 25.3 13 0.00029 35.3 -1.6 79 132-219 3-81 (572)
173 COG0129 IlvD Dihydroxyacid deh 24.1 3.6E+02 0.0078 26.7 7.7 31 182-219 419-449 (575)
174 PF07292 NID: Nmi/IFP 35 domai 23.6 49 0.0011 24.4 1.4 22 132-153 52-73 (88)
175 PF07237 DUF1428: Protein of u 20.7 3.1E+02 0.0066 20.8 5.3 49 149-197 25-85 (103)
176 CHL00123 rps6 ribosomal protei 20.7 1.8E+02 0.0039 21.5 4.0 65 134-205 10-88 (97)
177 PF12829 Mhr1: Transcriptional 20.0 1.3E+02 0.0029 22.3 3.1 22 178-199 52-73 (91)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=9.1e-19 Score=141.01 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||++++|++|+++|++||.|++|+|+.++. .++++|||||+|.+.++|+.||+.||+..|+++ .
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr-----~ 105 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE---TGRSRGFGFVNFNDEGAATAAISEMDGKELNGR-----H 105 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHcCCCEECCE-----E
Confidence 67999999999999999999999999999999998762 245566999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|++++.+
T Consensus 106 l~V~~a~~~ 114 (144)
T PLN03134 106 IRVNPANDR 114 (144)
T ss_pred EEEEeCCcC
Confidence 999999754
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=5.8e-17 Score=146.31 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+.+|||+|||+++++++|+++|++||.|++|+|+.+.. .|.++|||||+|.+.++|..||+.|||+.|+|+ .
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~---t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr-----~ 340 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLT---TNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR-----V 340 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCC---CCCccceEEEEECCHHHHHHHHHHhCCCEECCe-----E
Confidence 55899999999999999999999999999999998862 245566999999999999999999999999999 9
Q ss_pred EEEEeecCCCC
Q 026826 212 LRLQFARYPGA 222 (232)
Q Consensus 212 L~V~~ak~~~~ 222 (232)
|+|+|+.++..
T Consensus 341 i~V~~~~~~~~ 351 (352)
T TIGR01661 341 LQVSFKTNKAY 351 (352)
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=3.3e-16 Score=142.61 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++||++|+++|+.||.|++|+|+.+.. .|+++|||||+|.++++|+.||+.|||..|.++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~---tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr----- 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK---TGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK----- 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCccCcEEEEEEccHHHHHHHHHHcCCCccCCc-----
Confidence 478999999999999999999999999999999998752 244556999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
+|+|+|++..
T Consensus 178 ~i~V~~a~p~ 187 (346)
T TIGR01659 178 RLKVSYARPG 187 (346)
T ss_pred eeeeeccccc
Confidence 9999998753
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.4e-16 Score=143.81 Aligned_cols=81 Identities=26% Similarity=0.520 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.+++|++|+++|++||+|++|+|+.++. .|+++|||||+|.+.++|++||+.|||+.|.++ .
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~---~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~-----~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV---TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK-----T 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC---CCccceEEEEEECcHHHHHHHHhhcccEEECCe-----e
Confidence 67999999999999999999999999999999998763 255667999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|+++.
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999999764
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=3.9e-16 Score=108.28 Aligned_cols=70 Identities=29% Similarity=0.558 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 135 LfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
|||+|||.++|+++|+++|++||.|..+.+..+.. +..+++|||+|.+.++|+.|++.|||+.+.++ .|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~-----~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKINGR-----KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE-----EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECcc-----CcC
Confidence 79999999999999999999999999999988732 45556999999999999999999999999998 775
No 6
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.5e-16 Score=126.97 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+||+.++++.||+.+|..||.|..|.|..... | ||||||+++.+|+.|+..|+|..|+|. .
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP----G----fAFVEFed~RDA~DAvr~LDG~~~cG~-----r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP----G----FAFVEFEDPRDAEDAVRYLDGKDICGS-----R 76 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC----C----ceEEeccCcccHHHHHhhcCCccccCc-----e
Confidence 67999999999999999999999999999999987543 3 999999999999999999999999999 9
Q ss_pred EEEEeecCCCC
Q 026826 212 LRLQFARYPGA 222 (232)
Q Consensus 212 L~V~~ak~~~~ 222 (232)
|+|++++....
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999987644
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.7e-16 Score=120.31 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.++||||+||++.++||+|.+||+++|+|+.|.+-.++.+ -.++|||||+|.+.++|+.|++-++|..++.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k---ktpCGFCFVeyy~~~dA~~AlryisgtrLddr----- 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK---KTPCGFCFVEYYSRDDAEDALRYISGTRLDDR----- 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC---cCccceEEEEEecchhHHHHHHHhccCccccc-----
Confidence 4889999999999999999999999999999988887743 24567999999999999999999999999999
Q ss_pred eEEEEeec
Q 026826 211 KLRLQFAR 218 (232)
Q Consensus 211 ~L~V~~ak 218 (232)
+|+|+|.-
T Consensus 107 ~ir~D~D~ 114 (153)
T KOG0121|consen 107 PIRIDWDA 114 (153)
T ss_pred ceeeeccc
Confidence 99999863
No 8
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.4e-15 Score=129.74 Aligned_cols=81 Identities=30% Similarity=0.478 Sum_probs=76.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|=|.||+.+++|++|.+||.+||.|..|.|..++. .|.++|||||.|.+.++|++||+.|||+-++.- .
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~---TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L-----I 260 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKE---TGLSKGFAFVTFESRDDAARAIADLNGYGYDNL-----I 260 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccc---cCcccceEEEEEecHHHHHHHHHHccCcccceE-----E
Confidence 67999999999999999999999999999999999873 477788999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|+++.
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999999974
No 9
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.4e-15 Score=125.28 Aligned_cols=78 Identities=29% Similarity=0.597 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++.|.||++||.+||.|++|.|..... +.+||||+|+++.+|+.||..-+|+.+++. .
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g------~ppfafVeFEd~RDAeDAiygRdGYdydg~-----r 74 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGC-----R 74 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC------CCCeeEEEecCccchhhhhhcccccccCcc-----e
Confidence 67999999999999999999999999999999865431 224999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|++.-
T Consensus 75 LRVEfprgg 83 (241)
T KOG0105|consen 75 LRVEFPRGG 83 (241)
T ss_pred EEEEeccCC
Confidence 999999753
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=4.9e-15 Score=134.98 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++||++|+++|++||.|++|+|+.++. .|++++||||+|.+.++|++||+.||+..+.+.. .+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~---tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~---~~ 266 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL---TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS---QP 266 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC---CCccceEEEEEECCHHHHHHHHHHhCCCccCCCc---ee
Confidence 57899999999999999999999999999999998752 3566679999999999999999999999997741 28
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|.+++..
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 999998754
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.9e-15 Score=129.53 Aligned_cols=163 Identities=15% Similarity=0.237 Sum_probs=118.6
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCcchHHhhhccccccCC------CCCCCCCCCCCCCCCCCCCCCcccC-CCC
Q 026826 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQISSYS------GGQSARHMSGGMPSRPVDDPRIVGI-GGM 105 (232)
Q Consensus 33 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~~------~g~~~r~~~g~~~g~~~~~~~~~~~-~~~ 105 (232)
+...+|..=.+++.|- -|--|.++|+|-+. +++-+..|+ -.++.+++. .|+|.=|+.+.+... ...
T Consensus 69 dls~eI~~e~lr~aF~-pFGevS~akvirD~-----~T~KsKGYgFVSf~~k~dAEnAI~-~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 69 DLSPEIDNEKLREAFA-PFGEVSDAKVIRDM-----NTGKSKGYGFVSFPNKEDAENAIQ-QMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred hcchhcchHHHHHHhc-cccccccceEeecc-----cCCcccceeEEeccchHHHHHHHH-HhCCeeeccceeecccccc
Confidence 6777787777777653 24457889998876 666555555 345778888 999998887655322 111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeC
Q 026826 106 DPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFV 185 (232)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~ 185 (232)
-|... +.....|- +.-......+++|||+||+.-+||++|++.|++||.|.+||+.+++ | |+||.|+
T Consensus 142 Kp~e~-n~~~ltfd---eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----G----YaFVrF~ 208 (321)
T KOG0148|consen 142 KPSEM-NGKPLTFD---EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----G----YAFVRFE 208 (321)
T ss_pred Ccccc-CCCCccHH---HHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----c----eEEEEec
Confidence 11000 01111110 0001111238999999999999999999999999999999999886 3 9999999
Q ss_pred CHHHHHHHHHHhCCceeCCCCCCcceEEEEeecCC
Q 026826 186 SPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 186 ~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~~ 220 (232)
+.|+|..||..+||.+|.|+ .++..|-|..
T Consensus 209 tkEaAahAIv~mNntei~G~-----~VkCsWGKe~ 238 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQ-----LVRCSWGKEG 238 (321)
T ss_pred chhhHHHHHHHhcCceeCce-----EEEEeccccC
Confidence 99999999999999999999 9999998864
No 12
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=4.8e-14 Score=123.33 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 127 ~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
+--|+-+||||+-|+.+++|..|+..|+.||.|+.|+||.++- .|+++|||||+|+++.+...|.+..+|.+|+++
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v---TgkskGYAFIeye~erdm~~AYK~adG~~Idgr- 171 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV---TGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR- 171 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc---cCCccceEEEEeccHHHHHHHHHhccCceecCc-
Confidence 3345688999999999999999999999999999999999862 477788999999999999999999999999999
Q ss_pred CCcceEEEEeecCC
Q 026826 207 RDSVKLRLQFARYP 220 (232)
Q Consensus 207 ~~~~~L~V~~ak~~ 220 (232)
.|.|++.+-+
T Consensus 172 ----ri~VDvERgR 181 (335)
T KOG0113|consen 172 ----RILVDVERGR 181 (335)
T ss_pred ----EEEEEecccc
Confidence 9999998765
No 13
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=5.6e-14 Score=105.95 Aligned_cols=86 Identities=23% Similarity=0.487 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 026826 122 RSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR 201 (232)
Q Consensus 122 ~~~~~~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~ 201 (232)
.+...+||+.+..|||.|||+++|.+++.+||.+||.|..|||-..+. ..| -|||.|++..+|.+|++.|+|+.
T Consensus 8 ~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrG----TAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 8 KQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRG----TAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred cCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCc----eEEEEehHhhhHHHHHHHhcccc
Confidence 345667888899999999999999999999999999999999987753 233 89999999999999999999999
Q ss_pred eCCCCCCcceEEEEeec
Q 026826 202 FDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 202 l~g~~~~~~~L~V~~ak 218 (232)
++++ -|.|-|-.
T Consensus 82 ~~~r-----yl~vlyyq 93 (124)
T KOG0114|consen 82 VDNR-----YLVVLYYQ 93 (124)
T ss_pred cCCc-----eEEEEecC
Confidence 9999 89988754
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=4e-14 Score=136.47 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+||+.++++++|+++|+.||.|++|+|+.++. +|+++|||||+|.+.++|.+||+.||++.|+|+ .
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~---tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr-----~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT---GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-----Y 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe-----E
Confidence 57999999999999999999999999999999998763 244556999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|.++..+
T Consensus 276 LrV~kAi~p 284 (612)
T TIGR01645 276 LRVGKCVTP 284 (612)
T ss_pred EEEEecCCC
Confidence 999999864
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.5e-14 Score=122.31 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||+.+||++|+++|+.||.|.+|+|+.++. .+ |||||+|.++++|+.|| .|||..|.++ .
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~----GfAFVtF~d~eaAe~Al-lLnG~~l~gr-----~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RS----QIAYVTFKDPQGAETAL-LLSGATIVDQ-----S 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CC----CEEEEEeCcHHHHHHHH-HhcCCeeCCc-----e
Confidence 57999999999999999999999999999999988753 22 39999999999999999 5999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|.++..
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999874
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=8.5e-14 Score=97.42 Aligned_cols=67 Identities=25% Similarity=0.531 Sum_probs=60.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 135 LfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
|||+|||+++++++|.++|+.||.|..+++..++. |.++++|||+|.+.++|.+|++.+++..++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999998753 35567999999999999999999999999998
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=8.3e-14 Score=131.79 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
+..++|||+|||..+++++|+++|+.||.|+.+.|+.+.. .|.++|||||+|.+.++|+.||+.|||..|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~---- 365 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA---TGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN---- 365 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe----
Confidence 3467999999999999999999999999999999988752 255667999999999999999999999999999
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
.|+|+++..
T Consensus 366 -~l~v~~a~~ 374 (509)
T TIGR01642 366 -KLHVQRACV 374 (509)
T ss_pred -EEEEEECcc
Confidence 999999864
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=8.5e-14 Score=133.80 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~f--G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++|||+||+.++++++|+++|++| |.|++|+++.+ ||||+|.+.++|++||+.|||..|+++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-----------fAFVeF~s~e~A~kAi~~lnG~~i~Gr---- 297 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-----------YAFVHFEDREDAVKAMDELNGKELEGS---- 297 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-----------eEEEEeCCHHHHHHHHHHhCCCEECCE----
Confidence 5789999999999999999999999 99999987632 999999999999999999999999999
Q ss_pred ceEEEEeecCCC
Q 026826 210 VKLRLQFARYPG 221 (232)
Q Consensus 210 ~~L~V~~ak~~~ 221 (232)
.|+|+|++++.
T Consensus 298 -~I~V~~Akp~~ 308 (578)
T TIGR01648 298 -EIEVTLAKPVD 308 (578)
T ss_pred -EEEEEEccCCC
Confidence 99999998763
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=8e-14 Score=130.35 Aligned_cols=80 Identities=21% Similarity=0.442 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++|+++|+++|++||.|..|+|+.+.. .|+++|||||+|.+.++|..|++.|||..|.++ .
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~---~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~-----~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE---TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR-----P 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHhcCCcEECCE-----E
Confidence 68999999999999999999999999999999998763 245667999999999999999999999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|.|+..
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999753
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=7.1e-14 Score=134.79 Aligned_cols=80 Identities=15% Similarity=0.322 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+||++++++++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|+.||+.|||..|.|+ .
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~---TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR-----~ 178 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR-----N 178 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC---CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc-----e
Confidence 57999999999999999999999999999999998752 245667999999999999999999999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|.+...
T Consensus 179 IkV~rp~~ 186 (612)
T TIGR01645 179 IKVGRPSN 186 (612)
T ss_pred eeeccccc
Confidence 99987543
No 21
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=8.8e-14 Score=109.47 Aligned_cols=88 Identities=17% Similarity=0.280 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 127 ~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
..+.....|||.++..++||++|.+.|..||+|+++.|..++ +.|-.||||+|+|++.++|++||++|||..|.+.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR---RtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q- 142 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR---RTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ- 142 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccc---ccccccceeeeehHhHHHHHHHHHhccchhhhCC-
Confidence 334457899999999999999999999999999999998875 2467778999999999999999999999999999
Q ss_pred CCcceEEEEeecCCCC
Q 026826 207 RDSVKLRLQFARYPGA 222 (232)
Q Consensus 207 ~~~~~L~V~~ak~~~~ 222 (232)
+|.|+|+-..++
T Consensus 143 ----~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 143 ----NVSVDWCFVKGP 154 (170)
T ss_pred ----ceeEEEEEecCC
Confidence 999999865543
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.8e-13 Score=119.90 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|+|.|||+...|.||+.+|++||.|.+|.|+.++.+ +|||+||+|++.++|++|-++|||..|.|+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-----SKGFGFVTmen~~dadRARa~LHgt~VEGR----- 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-----SKGFGFVTMENPADADRARAELHGTVVEGR----- 164 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-----CCccceEEecChhhHHHHHHHhhcceeece-----
Confidence 3579999999999999999999999999999999998743 334999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
+|.|..|..+
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 9999987543
No 23
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=9.7e-14 Score=116.18 Aligned_cols=80 Identities=26% Similarity=0.402 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..+|-|-||...++.++|..+|++||.|.+|.|+.++- .++++|||||.|.+..+|+.|+++|+|..|+|+ .
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~---Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR-----e 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY---TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR-----E 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccc---cccccceeEEEeeecchHHHHHHhhcceeeccc-----e
Confidence 56899999999999999999999999999999999872 234556999999999999999999999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|++|+.
T Consensus 85 lrVq~ary 92 (256)
T KOG4207|consen 85 LRVQMARY 92 (256)
T ss_pred eeehhhhc
Confidence 99999974
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.48 E-value=1.4e-13 Score=132.19 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
+|||+|||.++||++|+++|++||.|.+|+|..+.. .++++|||||+|.+.++|++|++.||+..|.++ .|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~---t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk-----~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV---TRRSLGYGYVNFQNPADAERALETMNFKRLGGK-----PIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-----eEE
Confidence 799999999999999999999999999999998863 234556999999999999999999999999999 999
Q ss_pred EEeecC
Q 026826 214 LQFARY 219 (232)
Q Consensus 214 V~~ak~ 219 (232)
|.|++.
T Consensus 74 i~~s~~ 79 (562)
T TIGR01628 74 IMWSQR 79 (562)
T ss_pred eecccc
Confidence 999864
No 25
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=3.5e-13 Score=92.09 Aligned_cols=72 Identities=31% Similarity=0.562 Sum_probs=64.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
+|||+|||.++++++|+++|.+||.+..+++..++ +.++++|||+|.+.++|+.|++.+++..+.++ .|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~-----~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR-----PLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE-----EEe
Confidence 58999999999999999999999999999988765 23345999999999999999999999999988 787
Q ss_pred EE
Q 026826 214 LQ 215 (232)
Q Consensus 214 V~ 215 (232)
|+
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 63
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=1.6e-13 Score=131.98 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD-EHDR 207 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~-g~~~ 207 (232)
+...++|||+|||++++|++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++||+.||++.|. ++
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr-- 128 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR-- 128 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeecCCc--
Confidence 33478999999999999999999999999999999998864 445569999999999999999999999996 44
Q ss_pred CcceEEEEee
Q 026826 208 DSVKLRLQFA 217 (232)
Q Consensus 208 ~~~~L~V~~a 217 (232)
.|.|.++
T Consensus 129 ---~l~V~~S 135 (578)
T TIGR01648 129 ---LLGVCIS 135 (578)
T ss_pred ---ccccccc
Confidence 5555544
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.47 E-value=1.7e-13 Score=131.64 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+++|||+||+.++++++|+++|++||.|++|+++.+.. |.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk----- 354 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK----- 354 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc-----
Confidence 367899999999999999999999999999999998864 34445999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
+|.|.+|+.+
T Consensus 355 ~l~V~~a~~k 364 (562)
T TIGR01628 355 PLYVALAQRK 364 (562)
T ss_pred eeEEEeccCc
Confidence 9999999864
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=3.7e-13 Score=115.66 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..||||+||++.+|+++|+++|+.||.|.+|+|+.+.. .+ +||||+|.++++|+.|+ .|+|..|.++ .
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--t~----gfAfVtF~d~~aaetAl-lLnGa~l~d~-----~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--YA----CTAYVTFKDAYALETAV-LLSGATIVDQ-----R 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--cc----eEEEEEECCHHHHHHHH-hcCCCeeCCc-----e
Confidence 57999999999999999999999999999999998741 22 49999999999999999 7999999999 8
Q ss_pred EEEEee
Q 026826 212 LRLQFA 217 (232)
Q Consensus 212 L~V~~a 217 (232)
|.|.-.
T Consensus 73 I~It~~ 78 (243)
T PLN03121 73 VCITRW 78 (243)
T ss_pred EEEEeC
Confidence 888754
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.44 E-value=4.6e-13 Score=125.21 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|| .|+|..|.++
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~---~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~----- 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN---SRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGR----- 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcceEEEEEECCHHHHHHHH-HhCCCEECCe-----
Confidence 478999999999999999999999999999999998752 2556679999999999999999 4999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
+|.|++++..
T Consensus 159 ~i~v~~~~~~ 168 (457)
T TIGR01622 159 PIIVQSSQAE 168 (457)
T ss_pred eeEEeecchh
Confidence 9999987643
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=4.2e-13 Score=127.11 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCCCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL--QGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L--nG~~l~g~~~~~ 209 (232)
+++|||+|||++++|++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.| ++..|.|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k-----~----~afVef~~~e~A~~Ai~~~~~~~~~l~g~---- 68 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK-----R----QALVEFEDEESAKACVNFATSVPIYIRGQ---- 68 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC-----C----EEEEEeCchHHHHHHHHHhhcCCceEcCe----
Confidence 7899999999999999999999999999999998643 2 9999999999999999874 78999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
+|+|+|++.+
T Consensus 69 -~l~v~~s~~~ 78 (481)
T TIGR01649 69 -PAFFNYSTSQ 78 (481)
T ss_pred -EEEEEecCCc
Confidence 9999999754
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=5.4e-13 Score=126.38 Aligned_cols=77 Identities=18% Similarity=0.335 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~-~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
++++|||+||++ .+|+++|+++|++||.|.+|+|+.++ +| ||||+|.+.++|+.||+.|||..|.|+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g----~afV~f~~~~~A~~Ai~~lng~~l~g~---- 341 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KE----TALIEMADPYQAQLALTHLNGVKLFGK---- 341 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 478999999998 69999999999999999999998763 23 999999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
+|+|++++..
T Consensus 342 -~l~v~~s~~~ 351 (481)
T TIGR01649 342 -PLRVCPSKQQ 351 (481)
T ss_pred -eEEEEEcccc
Confidence 9999998754
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=6.4e-13 Score=111.94 Aligned_cols=79 Identities=34% Similarity=0.553 Sum_probs=72.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..+|||+|||.++++++|.++|.+||.|..|++..++ ..|.++|||||+|.+.++|..|++.++|..|.++ .
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~---~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~-----~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR---ETGKSRGFAFVEFESEESAEKAIEELNGKELEGR-----P 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc---ccCccCceEEEEecCHHHHHHHHHHcCCCeECCc-----e
Confidence 5899999999999999999999999999999999885 1255666999999999999999999999999999 9
Q ss_pred EEEEeec
Q 026826 212 LRLQFAR 218 (232)
Q Consensus 212 L~V~~ak 218 (232)
|+|+++.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999965
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=8.6e-13 Score=120.73 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
...+.|||+.||.++.|+||..||++.|.|.++||+.++. .|+++|||||.|.+.++|++||+.||+++|.-.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~---sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK--- 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF---SGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK--- 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc---CCCCcceEEEEeecHHHHHHHHHHhhCccccCCC---
Confidence 3478999999999999999999999999999999999852 2666779999999999999999999999996442
Q ss_pred ceEEEEeec
Q 026826 210 VKLRLQFAR 218 (232)
Q Consensus 210 ~~L~V~~ak 218 (232)
.|.|..+.
T Consensus 155 -~igvc~Sv 162 (506)
T KOG0117|consen 155 -LLGVCVSV 162 (506)
T ss_pred -EeEEEEee
Confidence 77776653
No 34
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=115.20 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=65.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
-++|||+||+|+++.++|++.|++||+|++..|+.|+. .|++|||+||+|.+.++|++|++-- .-.|+|+ +
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~---t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR-----~ 82 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN---TGRSKGYGFVTFRDAEAATRACKDP-NPIIDGR-----K 82 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC---CccccceeeEEeecHHHHHHHhcCC-CCccccc-----c
Confidence 36899999999999999999999999999999999974 3677789999999999999998643 3567888 5
Q ss_pred EEEEee
Q 026826 212 LRLQFA 217 (232)
Q Consensus 212 L~V~~a 217 (232)
..+..|
T Consensus 83 aNcnlA 88 (247)
T KOG0149|consen 83 ANCNLA 88 (247)
T ss_pred cccchh
Confidence 555444
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.2e-13 Score=115.26 Aligned_cols=81 Identities=26% Similarity=0.515 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.+.|.|.-||.++|++||+.||...|+|++|+|+.|+- .|.+.||+||.|.++++|++|++.|||.++..+ .
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi---tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K-----T 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI---TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK-----T 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc---cccccccceeeecChHHHHHHHhhhcceeeccc-----e
Confidence 46799999999999999999999999999999999973 467778999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+||++.
T Consensus 113 IKVSyARPS 121 (360)
T KOG0145|consen 113 IKVSYARPS 121 (360)
T ss_pred EEEEeccCC
Confidence 999999975
No 36
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.2e-14 Score=116.92 Aligned_cols=79 Identities=16% Similarity=0.398 Sum_probs=73.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+.-|||+|||+++||.||.-+|++||.|++|.|+.++. .|+++||||..|++..+...|+..|||.+|.|+ .
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~---TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR-----t 106 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK---TGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR-----T 106 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC---CCcccceEEEEecCccceEEEEeccCCceecce-----e
Confidence 56899999999999999999999999999999999874 588889999999999999999999999999999 9
Q ss_pred EEEEeec
Q 026826 212 LRLQFAR 218 (232)
Q Consensus 212 L~V~~ak 218 (232)
|+|+..-
T Consensus 107 irVDHv~ 113 (219)
T KOG0126|consen 107 IRVDHVS 113 (219)
T ss_pred EEeeecc
Confidence 9998753
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.6e-12 Score=88.13 Aligned_cols=74 Identities=31% Similarity=0.569 Sum_probs=66.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
+|+|+|||..+++++|+++|+.||.|..+.+..+... .+.++|||+|.+.++|..|++.+++..+.++ .|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~----~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~-----~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT----KSKGFAFVEFEDEEDAEKALEALNGKELGGR-----PLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC----CcceEEEEEECCHHHHHHHHHHhCCCeECCe-----EEE
Confidence 4899999999999999999999999999999876542 2345999999999999999999999999998 888
Q ss_pred EEe
Q 026826 214 LQF 216 (232)
Q Consensus 214 V~~ 216 (232)
|++
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 875
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4.9e-13 Score=122.32 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.+.|||+||+.++|||.|+++|++||.|..|+.+.| ||||.|.+.++|.+||+.+||++|+|. .
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~-----~ 322 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGS-----P 322 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCc-----e
Confidence 468999999999999999999999999999988865 999999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|.|.+||++.
T Consensus 323 iEvtLAKP~~ 332 (506)
T KOG0117|consen 323 IEVTLAKPVD 332 (506)
T ss_pred EEEEecCChh
Confidence 9999999873
No 39
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.4e-13 Score=114.80 Aligned_cols=84 Identities=24% Similarity=0.454 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCC--CCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~--~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
..+||||++|..+++|.-|...|-+||.|++|.++.+. .+|++ |+||+|+..++|.+||..||+.+|.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRg-----FgFVefe~aEDAaaAiDNMnesEL~Gr--- 80 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRG-----FGFVEFEEAEDAAAAIDNMNESELFGR--- 80 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccc-----eeEEEeeccchhHHHhhcCchhhhcce---
Confidence 36799999999999999999999999999999999876 45544 999999999999999999999999999
Q ss_pred cceEEEEeecCCCCCC
Q 026826 209 SVKLRLQFARYPGARS 224 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r~ 224 (232)
.|+|.||++.....
T Consensus 81 --tirVN~AkP~kike 94 (298)
T KOG0111|consen 81 --TIRVNLAKPEKIKE 94 (298)
T ss_pred --eEEEeecCCccccC
Confidence 99999999875443
No 40
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=1e-12 Score=121.69 Aligned_cols=76 Identities=22% Similarity=0.402 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCCCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP--AHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~--~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
..+||||||++++++++|..+|..||.|..|.|+.... +|||||+|.+. .++.+||+.|||.++.|+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-------RGFAFVEMssdddaEeeKAISaLNGAEWKGR---- 78 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-------RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG---- 78 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-------CceEEEEecCCcHHHHHHHHHHhcCCeecCc----
Confidence 56899999999999999999999999999999994332 35999999987 789999999999999999
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
.|+|+-|+.
T Consensus 79 -~LKVNKAKP 87 (759)
T PLN03213 79 -RLRLEKAKE 87 (759)
T ss_pred -eeEEeeccH
Confidence 999999875
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.7e-12 Score=88.15 Aligned_cols=71 Identities=32% Similarity=0.554 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEE
Q 026826 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQ 215 (232)
Q Consensus 137 V~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~ 215 (232)
|+|||..+++++|+++|++||.|.++.+..++. .+.++++|||+|.+.++|..|++.|++..+.++ .|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~-----~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD---TGKSKGFAFVEFESEEDAEKALEALNGKELDGR-----PLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC---CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc-----EEEeC
Confidence 689999999999999999999999999887652 244556999999999999999999999999988 88773
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.6e-13 Score=122.77 Aligned_cols=86 Identities=27% Similarity=0.356 Sum_probs=75.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..+|||+-|+..+||.|+++||++||.|++|+|+.+..+.++ |||||.|.+.+.|..||++|||..-... ++.+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sR----GcaFV~fstke~A~~Aika~ng~~tmeG--cs~P 197 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSR----GCAFVKFSTKEMAVAAIKALNGTQTMEG--CSQP 197 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccccccc----ceeEEEEehHHHHHHHHHhhccceeecc--CCCc
Confidence 568999999999999999999999999999999999875555 4999999999999999999999776554 5679
Q ss_pred EEEEeecCCCCC
Q 026826 212 LRLQFARYPGAR 223 (232)
Q Consensus 212 L~V~~ak~~~~r 223 (232)
|.|.||.....|
T Consensus 198 LVVkFADtqkdk 209 (510)
T KOG0144|consen 198 LVVKFADTQKDK 209 (510)
T ss_pred eEEEecccCCCc
Confidence 999999876444
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=3.9e-13 Score=117.40 Aligned_cols=72 Identities=21% Similarity=0.432 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
.+|||+|||.++++.+|+.||++||+|++|.|+++ |+||..++...|+.||..|||++|+|. .|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~-----nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGV-----NI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecce-----EE
Confidence 37999999999999999999999999999999987 999999999999999999999999999 99
Q ss_pred EEEeecCC
Q 026826 213 RLQFARYP 220 (232)
Q Consensus 213 ~V~~ak~~ 220 (232)
.|+-+|++
T Consensus 67 nVeaSksK 74 (346)
T KOG0109|consen 67 NVEASKSK 74 (346)
T ss_pred EEEecccc
Confidence 99999887
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=1.9e-12 Score=120.60 Aligned_cols=81 Identities=28% Similarity=0.451 Sum_probs=76.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
+.|||||||++++|++|.++|+..|.|.+++++.|+. +|+++||+|++|.+.+.|+.|++.|||+++.++ +|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~---tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr-----~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRE---TGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR-----KL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccccc---CCCcCceeeEecCchhhHHHHHHhcCCcccCCc-----eE
Confidence 7899999999999999999999999999999999974 477888999999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 026826 213 RLQFARYPG 221 (232)
Q Consensus 213 ~V~~ak~~~ 221 (232)
+|.|+....
T Consensus 91 ~v~~~~~~~ 99 (435)
T KOG0108|consen 91 RVNYASNRK 99 (435)
T ss_pred Eeecccccc
Confidence 999997653
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.1e-12 Score=116.72 Aligned_cols=84 Identities=21% Similarity=0.394 Sum_probs=72.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.-+|||+-||..++|+||+++|++||.|.+|.|++|+. .|.++|||||.|.+.++|.+|+.+|++.+.... ...+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~---t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG--~~~p 108 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS---TGQSKGCCFVKYYTRKEADEAINALHNQKTLPG--MHHP 108 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc---cCcccceEEEEeccHHHHHHHHHHhhcccccCC--CCcc
Confidence 56899999999999999999999999999999999973 346667999999999999999999998765332 2348
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|.|.||...
T Consensus 109 vqvk~Ad~E 117 (510)
T KOG0144|consen 109 VQVKYADGE 117 (510)
T ss_pred eeecccchh
Confidence 999998754
No 46
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=1e-11 Score=83.66 Aligned_cols=56 Identities=29% Similarity=0.613 Sum_probs=50.5
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEee
Q 026826 149 VAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFA 217 (232)
Q Consensus 149 L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~a 217 (232)
|.++|++||.|+++.+..++ ++ +|||+|.+.++|..|++.|||..+.|+ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~----~a~V~f~~~~~A~~a~~~l~~~~~~g~-----~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RG----FAFVEFASVEDAQKAIEQLNGRQFNGR-----PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TT----EEEEEESSHHHHHHHHHHHTTSEETTE-----EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCc-----EEEEEEC
Confidence 68999999999999998765 12 999999999999999999999999999 9999997
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.1e-12 Score=118.79 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
-..|.|.|||+.|.+.+|+.+|+.||.|++|.|+.+.. |+.+|||||.|.+..+|..||+.+||.+|+|+ +
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d----gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR-----~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD----GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR-----P 187 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC----CCccceEEEEEeeHHHHHHHHHhccCceecCc-----e
Confidence 56899999999999999999999999999999986654 55557999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|-|+||-..
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999654
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4e-12 Score=110.20 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.-.+||+-|..+++-++|++.|.+||+|.+++|++|.. .+++|||+||.|.+.++|+.||..|||.-|..+ .
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~---T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R-----~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN---TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR-----T 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeeccc---CCcccceeEEeccchHHHHHHHHHhCCeeeccc-----e
Confidence 34799999999999999999999999999999999874 467778999999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+..||..+.
T Consensus 134 IRTNWATRKp 143 (321)
T KOG0148|consen 134 IRTNWATRKP 143 (321)
T ss_pred eeccccccCc
Confidence 9999996543
No 49
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.31 E-value=3.7e-12 Score=104.78 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
+...||||+||+..++++.|.++|-+.|+|++++++.++-.. ..+|||||+|.++++|+-|++.||..+|.|+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~---~~qGygF~Ef~~eedadYAikiln~VkLYgr---- 79 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ---KHQGYGFAEFRTEEDADYAIKILNMVKLYGR---- 79 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc---cccceeEEEEechhhhHHHHHHHHHHHhcCc----
Confidence 346799999999999999999999999999999999987211 2234999999999999999999999999999
Q ss_pred ceEEEEeec
Q 026826 210 VKLRLQFAR 218 (232)
Q Consensus 210 ~~L~V~~ak 218 (232)
+|+|.-+.
T Consensus 80 -pIrv~kas 87 (203)
T KOG0131|consen 80 -PIRVNKAS 87 (203)
T ss_pred -eeEEEecc
Confidence 99998876
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=4e-11 Score=103.70 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
...|||=||.+++.|.-|-++|.+||.|..|+++.|.. ..++|||+||.+.+.++|..||..|||+.+.++ .
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~t---tnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r-----v 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFT---TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR-----V 349 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCC---cccccceeEEEecchHHHHHHHHHhcCccccce-----E
Confidence 57999999999999999999999999999999999874 235667999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|.|+|..++
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999997653
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.23 E-value=3.3e-11 Score=102.04 Aligned_cols=78 Identities=24% Similarity=0.435 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCCCCHHHHHH----HhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAH----IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~----lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
+.||||.||+..+..++|+. ||++||.|.+|...... +.+ |-|||.|.+.+.|..|+.+|+|+.+.|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmR-----GQA~VvFk~~~~As~A~r~l~gfpFygK-- 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMR-----GQAFVVFKETEAASAALRALQGFPFYGK-- 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-Ccc-----CceEEEecChhHHHHHHHHhcCCcccCc--
Confidence 55999999999999999987 99999999998776442 333 3999999999999999999999999999
Q ss_pred CcceEEEEeecCC
Q 026826 208 DSVKLRLQFARYP 220 (232)
Q Consensus 208 ~~~~L~V~~ak~~ 220 (232)
.++|+||++.
T Consensus 81 ---~mriqyA~s~ 90 (221)
T KOG4206|consen 81 ---PMRIQYAKSD 90 (221)
T ss_pred ---hhheecccCc
Confidence 9999999876
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.4e-11 Score=108.76 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.+.|||-.|.+-+|.++|.-||+.||.|+.|.++.+.. .|++..||||+|++.+++++|.-.|++..|+.+ .
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k---tgdsLqyaFiEFen~escE~AyFKMdNvLIDDr-----R 310 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK---TGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR-----R 310 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEeccc---ccchhheeeeeecchhhHHHHHhhhcceeeccc-----e
Confidence 67999999999999999999999999999999999863 588888999999999999999999999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|.|+.+
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99999865
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.20 E-value=1.9e-10 Score=97.56 Aligned_cols=88 Identities=36% Similarity=0.559 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
++..+||||.+||.++...||+.||..|-+++.+.|...... +.-.+.+|||.|.+...|.+|+++|||.+|+-. +
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~--~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE--~ 106 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKG--DQVCKPVAFATFTSHQFALAAMNALNGVRFDPE--T 106 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCC--CccccceEEEEecchHHHHHHHHHhcCeeeccc--c
Confidence 445789999999999999999999999999887766543211 011346999999999999999999999999876 4
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
...|+|++||+.
T Consensus 107 ~stLhiElAKSN 118 (284)
T KOG1457|consen 107 GSTLHIELAKSN 118 (284)
T ss_pred CceeEeeehhcC
Confidence 558999999875
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=2.4e-11 Score=106.30 Aligned_cols=73 Identities=22% Similarity=0.414 Sum_probs=70.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|+|+||.+.|+.+||+..|++||++.+|.|+++ |+||.|+..++|..|++.||+.+|+|+ .
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk-----~ 141 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGK-----R 141 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccc-----e
Confidence 789999999999999999999999999999999977 999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+.+.++
T Consensus 142 m~vq~stsr 150 (346)
T KOG0109|consen 142 MHVQLSTSR 150 (346)
T ss_pred eeeeeeccc
Confidence 999998775
No 55
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=4e-11 Score=115.88 Aligned_cols=79 Identities=24% Similarity=0.525 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
++||||++|+.+++|.||..+|+.||+|.+|.++..+ | ||||.+.+..+|++|+.+|+.+.+..+ .
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-----~----cAfI~M~~RqdA~kalqkl~n~kv~~k-----~ 486 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-----G----CAFIKMVRRQDAEKALQKLSNVKVADK-----T 486 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-----c----eeEEEEeehhHHHHHHHHHhcccccce-----e
Confidence 6899999999999999999999999999999998764 2 999999999999999999999999999 9
Q ss_pred EEEEeecCCCCCC
Q 026826 212 LRLQFARYPGARS 224 (232)
Q Consensus 212 L~V~~ak~~~~r~ 224 (232)
|+|.|+..++.++
T Consensus 487 Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 487 IKIAWAVGKGPKS 499 (894)
T ss_pred eEEeeeccCCcch
Confidence 9999999988776
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.1e-11 Score=105.76 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||=.||.+..+.||.++|-+||.|++.++..|+. ...+|+|+||.|+++.+|++||.+|||+.|.-+ .
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA---TNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK-----R 356 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA---TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK-----R 356 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc---cccccceeeEecCCchhHHHHHHHhcchhhhhh-----h
Confidence 78999999999999999999999999999999998873 235667999999999999999999999999998 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+..+++.
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9999988763
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.8e-10 Score=107.98 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-ceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-----QG-YRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L-----nG-~~l~g~ 205 (232)
..||||.|||+++||++|.+.|++||.|..+.|+.++. .|.++|.|||.|.+..+|.+||++. .| +.|+|+
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~---T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKD---TGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccC---CCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 47999999999999999999999999999999998872 2445569999999999999999876 34 889999
Q ss_pred CCCcceEEEEeecCC
Q 026826 206 DRDSVKLRLQFARYP 220 (232)
Q Consensus 206 ~~~~~~L~V~~ak~~ 220 (232)
.|+|..|-.+
T Consensus 369 -----~Lkv~~Av~R 378 (678)
T KOG0127|consen 369 -----LLKVTLAVTR 378 (678)
T ss_pred -----EEeeeeccch
Confidence 9999887543
No 58
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=3.9e-10 Score=100.75 Aligned_cols=90 Identities=19% Similarity=0.441 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCCCC-CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHH
Q 026826 116 LGLGGGRSEVPLPPD-ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194 (232)
Q Consensus 116 ~~~~~~~~~~~~p~~-~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai 194 (232)
+.+...++....|.| ..+||||++|-..++|.+|++.|.+||+|+.+++...+. ||||+|.+.++|+.|.
T Consensus 211 l~ra~~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~---------CAFv~ftTR~aAE~Aa 281 (377)
T KOG0153|consen 211 LNRAGSAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG---------CAFVTFTTREAAEKAA 281 (377)
T ss_pred HhhcccccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc---------cceeeehhhHHHHHHH
Confidence 445555555444444 357999999999999999999999999999999987752 9999999999999888
Q ss_pred HH-hCCceeCCCCCCcceEEEEeecC
Q 026826 195 DA-LQGYRFDEHDRDSVKLRLQFARY 219 (232)
Q Consensus 195 ~~-LnG~~l~g~~~~~~~L~V~~ak~ 219 (232)
+. +|-..|+|. .|+|.|+++
T Consensus 282 e~~~n~lvI~G~-----Rl~i~Wg~~ 302 (377)
T KOG0153|consen 282 EKSFNKLVINGF-----RLKIKWGRP 302 (377)
T ss_pred Hhhcceeeecce-----EEEEEeCCC
Confidence 76 466677888 999999998
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.08 E-value=4.4e-10 Score=106.46 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCC--C--------CHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 026826 131 ASSTLFVEGLPSD--C--------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY 200 (232)
Q Consensus 131 ~~~tLfV~nLp~~--~--------te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~ 200 (232)
++.+|+|.||... + ..++|+++|++||.|++|+|+.....+..+..+|++||+|.+.++|++||+.|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 3678999999631 1 23678999999999999999875322222344569999999999999999999999
Q ss_pred eeCCCCCCcceEEEEeec
Q 026826 201 RFDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 201 ~l~g~~~~~~~L~V~~ak 218 (232)
.|.|+ .|.|.|..
T Consensus 488 ~~~gr-----~v~~~~~~ 500 (509)
T TIGR01642 488 KFNDR-----VVVAAFYG 500 (509)
T ss_pred EECCe-----EEEEEEeC
Confidence 99999 99999864
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=2e-10 Score=94.62 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE-EEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~v-rl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.+|||+||.++++|..|.++|+.||.|... .++.+.. +|+++||+||.|.+.+.+.+|++.+||..+..+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~---tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr----- 167 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD---TGNPKGFGFINYASFEASDAAIGSMNGQYLCNR----- 167 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCccccccc---CCCCCCCeEEechhHHHHHHHHHHhccchhcCC-----
Confidence 4689999999999999999999999998753 4444442 355667999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
+|.|+|++....
T Consensus 168 ~itv~ya~k~~~ 179 (203)
T KOG0131|consen 168 PITVSYAFKKDT 179 (203)
T ss_pred ceEEEEEEecCC
Confidence 999999987643
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5e-10 Score=103.00 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=86.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCC
Q 026826 78 GGQSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFV 157 (232)
Q Consensus 78 ~g~~~r~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG 157 (232)
..++.+|+. .||-..+.+..+ .+.-...+ ...|||.||+++++.++|.++|+.||
T Consensus 47 ~~da~~A~~-~~n~~~~~~~~~-rim~s~rd-----------------------~~~~~i~nl~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 47 PADAERALD-TMNFDVLKGKPI-RIMWSQRD-----------------------PSLVFIKNLDESIDNKSLYDTFSEFG 101 (369)
T ss_pred HHHHHHHHH-HcCCcccCCcEE-EeehhccC-----------------------CceeeecCCCcccCcHHHHHHHHhhc
Confidence 456778888 777777766332 21111101 11299999999999999999999999
Q ss_pred CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecCCCCC
Q 026826 158 GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPGAR 223 (232)
Q Consensus 158 ~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~~~~r 223 (232)
+|++|++..+..+ ++|| ||+|+++++|.+||+.|||..+.++ .|.|.....+..|
T Consensus 102 ~ilS~kv~~~~~g-----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-----ki~vg~~~~~~er 156 (369)
T KOG0123|consen 102 NILSCKVATDENG-----SKGY-FVQFESEESAKKAIEKLNGMLLNGK-----KIYVGLFERKEER 156 (369)
T ss_pred CeeEEEEEEcCCC-----ceee-EEEeCCHHHHHHHHHHhcCcccCCC-----eeEEeeccchhhh
Confidence 9999999999864 4569 9999999999999999999999999 8998876655333
No 62
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=7.3e-10 Score=78.18 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=51.6
Q ss_pred HHHHHHHhc----CCCCeEEEE-EecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEE
Q 026826 146 RREVAHIFR----PFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRL 214 (232)
Q Consensus 146 e~~L~~lF~----~fG~i~~vr-l~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V 214 (232)
+++|+++|+ +||.|.+|. ++.++.. ..+.++||+||+|.+.++|.+|++.|||..+.|+ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr-----~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDGR-----TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-----EEEe
Confidence 578889998 999999995 5554421 1144556999999999999999999999999999 8876
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.04 E-value=1e-09 Score=100.78 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~-~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+.+||.|||+++.+.+|++||. +.|+|..|.|+.|.. |+++|||.|||.++|.+++|++.||-+.+.++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR----- 114 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNGR----- 114 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccCc-----
Confidence 45699999999999999999996 569999999999986 55556999999999999999999999999999
Q ss_pred eEEEEee
Q 026826 211 KLRLQFA 217 (232)
Q Consensus 211 ~L~V~~a 217 (232)
+|.|.=-
T Consensus 115 ~l~vKEd 121 (608)
T KOG4212|consen 115 ELVVKED 121 (608)
T ss_pred eEEEecc
Confidence 8888643
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.04 E-value=1.2e-09 Score=100.26 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||.|||+++|++.|++-|..||.++.+.|+.. |+++| .|.|.++++|+.|+..|||.+|+++
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~Gr----- 601 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLDGR----- 601 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCcccCc-----
Confidence 4678999999999999999999999999999888433 33443 8999999999999999999999999
Q ss_pred eEEEEee
Q 026826 211 KLRLQFA 217 (232)
Q Consensus 211 ~L~V~~a 217 (232)
.|+|.|.
T Consensus 602 ~I~V~y~ 608 (608)
T KOG4212|consen 602 NIKVTYF 608 (608)
T ss_pred eeeeeeC
Confidence 8999874
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=1.6e-10 Score=110.90 Aligned_cols=81 Identities=32% Similarity=0.536 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
++.|+|.|||+..+..+++.||..||.|++|+|+....+ +...|||||+|-++.+|.+|+++|.++.|.|+ .
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR-----r 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHLYGR-----R 684 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccceech-----h
Confidence 679999999999999999999999999999999987321 23345999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|.++||+..
T Consensus 685 LVLEwA~~d 693 (725)
T KOG0110|consen 685 LVLEWAKSD 693 (725)
T ss_pred hheehhccc
Confidence 999999864
No 66
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.03 E-value=3.8e-10 Score=105.73 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=69.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
.|||+||.+++++++|+.+|++||.|..|.+..+.. .|.++||+||+|.+.++|.+|++.|||.+|-|+ .|+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~---tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr-----~ik 351 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE---TGRSKGFGFITFVNKEDARKALEQLNGFELAGR-----LIK 351 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccc---cccccCcceEEEecHHHHHHHHHHhccceecCc-----eEE
Confidence 499999999999999999999999999999998851 255566999999999999999999999999999 899
Q ss_pred EEeec
Q 026826 214 LQFAR 218 (232)
Q Consensus 214 V~~ak 218 (232)
|....
T Consensus 352 V~~v~ 356 (549)
T KOG0147|consen 352 VSVVT 356 (549)
T ss_pred EEEee
Confidence 87653
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=7.1e-10 Score=106.49 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
+|||.||++++|.++|..+|...|.|+.+.|...+.....=-++||+||+|.+.++|+.|++.|||+.|+|+ .|.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH-----~l~ 591 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH-----KLE 591 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc-----eEE
Confidence 499999999999999999999999999999987664322223567999999999999999999999999999 999
Q ss_pred EEeecC
Q 026826 214 LQFARY 219 (232)
Q Consensus 214 V~~ak~ 219 (232)
|+++.+
T Consensus 592 lk~S~~ 597 (725)
T KOG0110|consen 592 LKISEN 597 (725)
T ss_pred EEeccC
Confidence 999983
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=4.3e-10 Score=101.21 Aligned_cols=77 Identities=16% Similarity=0.340 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
-++||||.|.+++.|+.|+..|.+||+|++|.+-++.- .++.||||||+|+-++.|+.|++.|||..+.|+ .
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~---T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR-----N 184 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR-----N 184 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccc---cccccceEEEEEeCcHHHHHHHHHhccccccCc-----c
Confidence 37899999999999999999999999999999998872 234445999999999999999999999999999 8
Q ss_pred EEEEe
Q 026826 212 LRLQF 216 (232)
Q Consensus 212 L~V~~ 216 (232)
|+|-.
T Consensus 185 iKVgr 189 (544)
T KOG0124|consen 185 IKVGR 189 (544)
T ss_pred ccccC
Confidence 98874
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=1.4e-09 Score=91.10 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC-CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~f-G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..-+||..+|..+.+.++...|.+| |.++.+++..++ +.|+++|||||+|++++-|..|-+.||+|.|.++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk---rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~----- 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK---RTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH----- 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc---ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh-----
Confidence 4578999999999999999999999 666777775543 3578888999999999999999999999999999
Q ss_pred eEEEEeecC
Q 026826 211 KLRLQFARY 219 (232)
Q Consensus 211 ~L~V~~ak~ 219 (232)
.|.+.|-.+
T Consensus 121 lL~c~vmpp 129 (214)
T KOG4208|consen 121 LLECHVMPP 129 (214)
T ss_pred eeeeEEeCc
Confidence 899887643
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.8e-09 Score=93.89 Aligned_cols=84 Identities=30% Similarity=0.400 Sum_probs=73.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+-|...-.|+|++.+|..||.|.+|.+..... |.+||||||.|.+..+|..||.+|+|....-. .+..
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG--ASSS 92 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSHAEAQAAINALHGSQTMPG--ASSS 92 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccchHHHHHHHHhcccccCCC--Cccc
Confidence 57999999999999999999999999999999988765 45556999999999999999999999887654 3457
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|.|.|+....
T Consensus 93 LVVK~ADTdk 102 (371)
T KOG0146|consen 93 LVVKFADTDK 102 (371)
T ss_pred eEEEeccchH
Confidence 9999997653
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=4e-09 Score=89.86 Aligned_cols=71 Identities=23% Similarity=0.435 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
.+||++||+.+.+.+|+++|..||.|.+|.+... |+||+|++..+|..|+..||+..|.+. .+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g-----------f~fv~fed~rda~Dav~~l~~~~l~~e-----~~v 66 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG-----------FGFVEFEDPRDADDAVHDLDGKELCGE-----RLV 66 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc-----------cceeccCchhhhhcccchhcCceecce-----eee
Confidence 6999999999999999999999999999877543 999999999999999999999999999 799
Q ss_pred EEeecCC
Q 026826 214 LQFARYP 220 (232)
Q Consensus 214 V~~ak~~ 220 (232)
|+|++..
T Consensus 67 ve~~r~~ 73 (216)
T KOG0106|consen 67 VEHARGK 73 (216)
T ss_pred eeccccc
Confidence 9999864
No 72
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.82 E-value=1e-08 Score=95.34 Aligned_cols=79 Identities=28% Similarity=0.461 Sum_probs=65.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..+|||+|||.++++.+|+++|.+||.|++.+|.... ++++..+|+||+|.+.++++.||++- -..|+++ +
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~-----k 358 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR-----K 358 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-ccccCCe-----e
Confidence 4569999999999999999999999999999887765 22333369999999999999999764 5666777 8
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|.|+=.+.
T Consensus 359 l~Veek~~ 366 (419)
T KOG0116|consen 359 LNVEEKRP 366 (419)
T ss_pred EEEEeccc
Confidence 98886654
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.81 E-value=1.6e-08 Score=87.74 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..+|+|.|||..++++||+++|..||.++.+-|..++. |.+.|.|-|.|...++|+.|++.+||..++|+ .
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~-----~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDGR-----P 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCCc-----e
Confidence 47899999999999999999999999999998888876 44556999999999999999999999999999 8
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+++...++
T Consensus 154 mk~~~i~~~ 162 (243)
T KOG0533|consen 154 MKIEIISSP 162 (243)
T ss_pred eeeEEecCc
Confidence 888776544
No 74
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=2e-09 Score=91.19 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
...||||+||...++|+-|.++|-+-|+|.+|.|..++.. +.| ||||+|.++....-|++.+||.++.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~----~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~----- 77 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ----EQK-FAYVFFPNENSVQLAGQLENGDDLEED----- 77 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC----CCc-eeeeecccccchhhhhhhcccchhccc-----
Confidence 3679999999999999999999999999999999888753 333 999999999999999999999999998
Q ss_pred eEEEEee
Q 026826 211 KLRLQFA 217 (232)
Q Consensus 211 ~L~V~~a 217 (232)
.|+|.+-
T Consensus 78 e~q~~~r 84 (267)
T KOG4454|consen 78 EEQRTLR 84 (267)
T ss_pred hhhcccc
Confidence 6777653
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.74 E-value=7.5e-09 Score=87.96 Aligned_cols=67 Identities=28% Similarity=0.617 Sum_probs=59.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
+.||||.||..+|||++|+.+|+.|.++..++|..+ +| .++|||+|++.+.|..||..|+|..|...
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-----~g--~~vaf~~~~~~~~at~am~~lqg~~~s~~ 276 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-----GG--MPVAFADFEEIEQATDAMNHLQGNLLSSS 276 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-----CC--cceEeecHHHHHHHHHHHHHhhcceeccc
Confidence 679999999999999999999999999988887544 23 24899999999999999999999998665
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=2.9e-08 Score=85.88 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
...+||+|+.+.+|.+++...|+.||.|..|.++.++. .|.+++|+||+|.+.+.++.|+. |||..|.+. .
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~---~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~-----~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF---RGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP-----A 171 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeecccc---CCCcceeEEEecccHhhhHHHhh-cCCcccccc-----c
Confidence 56899999999999999999999999999999988874 24466799999999999999997 999999999 8
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|.|.+.+-.
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 999887654
No 77
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=6.2e-08 Score=91.62 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+.+|||.+|...+...+|+.||++||.|+-.+++.+. +.+ | ..||+||++.+.++|.+||+.|+-++|.|+ .
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa-RsP-G-aRCYGfVTMSts~eAtkCI~hLHrTELHGr-----m 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA-RSP-G-ARCYGFVTMSTSAEATKCIEHLHRTELHGR-----M 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecC-CCC-C-cceeEEEEecchHHHHHHHHHhhhhhhcce-----e
Confidence 5789999999999999999999999999999998865 222 2 246999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|.|+-+++.
T Consensus 477 ISVEkaKNE 485 (940)
T KOG4661|consen 477 ISVEKAKNE 485 (940)
T ss_pred eeeeecccC
Confidence 999999875
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.73 E-value=4.1e-08 Score=87.94 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY 200 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~--------vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~ 200 (232)
+..++.|||.|||.++|-+|+.++|++||-|.. |+|-.++. |+.||=|.+.|--.++++.|++.|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCcc
Confidence 445778999999999999999999999999863 66666654 566668999999999999999999999
Q ss_pred eeCCCCCCcceEEEEeecCC
Q 026826 201 RFDEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 201 ~l~g~~~~~~~L~V~~ak~~ 220 (232)
.|.|+ .|+|+.|+..
T Consensus 207 ~~rg~-----~~rVerAkfq 221 (382)
T KOG1548|consen 207 ELRGK-----KLRVERAKFQ 221 (382)
T ss_pred cccCc-----EEEEehhhhh
Confidence 99999 9999999875
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=5e-08 Score=89.84 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
..|||| +++||.+|.++|+++|++++|++-.+. . +.|||||.|.++++|++||++||-..|.|+ +|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~~-----~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKGK-----PI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCCc-----EE
Confidence 369999 899999999999999999999998886 3 456999999999999999999999999999 99
Q ss_pred EEEeecC
Q 026826 213 RLQFARY 219 (232)
Q Consensus 213 ~V~~ak~ 219 (232)
+|-|+..
T Consensus 68 rim~s~r 74 (369)
T KOG0123|consen 68 RIMWSQR 74 (369)
T ss_pred Eeehhcc
Confidence 9999864
No 80
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=5e-08 Score=88.11 Aligned_cols=173 Identities=14% Similarity=0.157 Sum_probs=117.7
Q ss_pred CCCCCCCCCCCccccccccccCCC--CCCCCCCCCCCCCCcchHHhhhc-ccccc--CCCCCCC-CCCCCCCCCCCCCCC
Q 026826 24 KRPRTDYDVPSGHELSSYYTRDDD--RGALRGMRDTDSLGASYDRYLRS-AQISS--YSGGQSA-RHMSGGMPSRPVDDP 97 (232)
Q Consensus 24 ~r~~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~~~~~~~~y~~y~~~-~~~~~--~~~g~~~-r~~~g~~~g~~~~~~ 97 (232)
.|.+.--.||-..+..-||.-.|| |..|-.+-.-|+|..++|.--.. ...-| |---++. =+.. .|||..|+++
T Consensus 105 qrqqALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlE-qMNg~mlGGR 183 (544)
T KOG0124|consen 105 QRQQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE-QMNGQMLGGR 183 (544)
T ss_pred HHHHHHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHH-HhccccccCc
Confidence 344443456666666667766565 88888888889998886654211 11111 2222222 2333 7888877776
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCC
Q 026826 98 RIVGIGGMDPGPSAKDRALGLGGGRSEVPL-------PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESR 170 (232)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~ 170 (232)
++.... .+.+|.... ....-++|||..+.++++|+||+.+|+.||+|++|.|.....
T Consensus 184 NiKVgr---------------PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt- 247 (544)
T KOG0124|consen 184 NIKVGR---------------PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT- 247 (544)
T ss_pred cccccC---------------CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-
Confidence 654331 111211000 011247999999999999999999999999999999998763
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecCC
Q 026826 171 HPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 171 ~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~~ 220 (232)
++..+||+|++|.+..+-..||..||=+.+.|. -|+|--+-.|
T Consensus 248 --~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ-----yLRVGk~vTP 290 (544)
T KOG0124|consen 248 --GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-----YLRVGKCVTP 290 (544)
T ss_pred --CCCccceeeEEeccccchHHHhhhcchhhcccc-----eEecccccCC
Confidence 233456999999999999999999999999998 8999766544
No 81
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=1.1e-07 Score=80.78 Aligned_cols=76 Identities=33% Similarity=0.749 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++.+||+.|||.+++.+.|..+|.+|...++|+++.... + .|||+|.+...|..|..+|+|..|.-.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~----~----iAfve~~~d~~a~~a~~~lq~~~it~~~---- 212 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS----G----IAFVEFLSDRQASAAQQALQGFKITKKN---- 212 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC----c----eeEEecchhhhhHHHhhhhccceeccCc----
Confidence 478999999999999999999999999999999998653 3 9999999999999999999999998432
Q ss_pred eEEEEeec
Q 026826 211 KLRLQFAR 218 (232)
Q Consensus 211 ~L~V~~ak 218 (232)
.|+|.|++
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 89999886
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.8e-08 Score=92.62 Aligned_cols=70 Identities=26% Similarity=0.450 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+..+|+|-|||..+++++|..+|+.||+|++|+.-..+. | .+||+|.|..+|+.|+++|++.+|.++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~----~----~~~v~FyDvR~A~~Alk~l~~~~~~~~----- 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR----G----IVFVEFYDVRDAERALKALNRREIAGK----- 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC----c----eEEEEEeehHhHHHHHHHHHHHHhhhh-----
Confidence 357999999999999999999999999999977654432 3 999999999999999999999999998
Q ss_pred eEE
Q 026826 211 KLR 213 (232)
Q Consensus 211 ~L~ 213 (232)
.|+
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 666
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.60 E-value=5.2e-08 Score=87.53 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||++|+++++++.|++.|.+||+|.+|.++.+... +.++||+||+|++.++..++|. ..-..|+++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr----- 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLN-ARTHKLDGR----- 75 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeec-ccccccCCc-----
Confidence 3689999999999999999999999999999999998732 4556699999999999998884 344667787
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|.+.-|.++
T Consensus 76 ~ve~k~av~r 85 (311)
T KOG4205|consen 76 SVEPKRAVSR 85 (311)
T ss_pred cccceeccCc
Confidence 7777666554
No 84
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.59 E-value=1.9e-07 Score=90.14 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCC---CCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE---SRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~---~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
.++|||+||++.++++.|...|..||+|..|+|+.-+ .+.+. .-|+||-|-+..+|++|++.|||..+...
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~---r~cgfvafmnR~D~era~k~lqg~iv~~~--- 247 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRE---RNCGFVAFMNRADAERALKELQGIIVMEY--- 247 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccc---cccceeeehhhhhHHHHHHHhcceeeeee---
Confidence 5789999999999999999999999999999998754 22221 12999999999999999999999999999
Q ss_pred cceEEEEeecC
Q 026826 209 SVKLRLQFARY 219 (232)
Q Consensus 209 ~~~L~V~~ak~ 219 (232)
.|++-|++.
T Consensus 248 --e~K~gWgk~ 256 (877)
T KOG0151|consen 248 --EMKLGWGKA 256 (877)
T ss_pred --eeeeccccc
Confidence 999999964
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.40 E-value=2.4e-06 Score=64.40 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~f--G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+||.|.|||...|.++|.+++... |.+--+.|+.|.. .+-..|||||.|.+++.|..-.+.++|..+.... ..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~---~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~-s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK---NKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN-SKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc---CCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC-CCc
Confidence 689999999999999999888643 6666667777652 1335579999999999999999999999997441 224
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
...|.||+-+|
T Consensus 78 vc~i~yAriQG 88 (97)
T PF04059_consen 78 VCEISYARIQG 88 (97)
T ss_pred EEEEehhHhhC
Confidence 78999998764
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.32 E-value=8.6e-07 Score=79.73 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
...+|||++||.++++++|++.|.+||.|..+.++.+... .++++|+||.|.+++.+.+++ ...-+.|.++
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk----- 166 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGK----- 166 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccceec-ccceeeecCc-----
Confidence 3679999999999999999999999999999988887732 234459999999999999887 4567778888
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.+.|..|.++
T Consensus 167 ~vevkrA~pk 176 (311)
T KOG4205|consen 167 KVEVKRAIPK 176 (311)
T ss_pred eeeEeeccch
Confidence 7888877665
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.24 E-value=1.2e-06 Score=75.84 Aligned_cols=77 Identities=19% Similarity=0.386 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..+||++-|..+++.+.|...|.+|-.+...+++.++ +.|+++||+||.|.+..++..|++.|||.-+..+ +
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk---RTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr-----p 261 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK---RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR-----P 261 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccc---cccccccceeeeecCHHHHHHHHHhhcccccccc-----h
Confidence 4689999999999999999999999999988888875 3577888999999999999999999999999988 7
Q ss_pred EEEEe
Q 026826 212 LRLQF 216 (232)
Q Consensus 212 L~V~~ 216 (232)
|++.-
T Consensus 262 iklRk 266 (290)
T KOG0226|consen 262 IKLRK 266 (290)
T ss_pred hHhhh
Confidence 76643
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.23 E-value=4.7e-06 Score=76.36 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=69.2
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~-~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+..|-|.||.. .+|.+-|..+|.-||.|..|+|..++. . -|.|++.+...|+-|++.|+|.++.|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d-----~ALIQmsd~~qAqLA~~hL~g~~l~gk----- 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---D-----NALIQMSDGQQAQLAMEHLEGHKLYGK----- 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---c-----ceeeeecchhHHHHHHHHhhcceecCc-----
Confidence 67889999865 599999999999999999999998763 1 799999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
+|+|.++|-.
T Consensus 364 ~lrvt~SKH~ 373 (492)
T KOG1190|consen 364 KLRVTLSKHT 373 (492)
T ss_pred eEEEeeccCc
Confidence 9999999865
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.18 E-value=3.7e-06 Score=75.82 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD 203 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~--------vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~ 203 (232)
+.+|||.+||..+++++|.++|.+|+.|+. |.|-.++ ..+++|+=|.|.|++..+|+.||+.+++..+.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dk---eT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDK---ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccc---cccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 569999999999999999999999998863 2232222 34678889999999999999999999999999
Q ss_pred CCCCCcceEEEEeecCC
Q 026826 204 EHDRDSVKLRLQFARYP 220 (232)
Q Consensus 204 g~~~~~~~L~V~~ak~~ 220 (232)
+. +|+|.+|..+
T Consensus 143 gn-----~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GN-----TIKVSLAERR 154 (351)
T ss_pred CC-----Cchhhhhhhc
Confidence 98 8999888655
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=1.3e-05 Score=58.69 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhcCCCC-eEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 133 STLFVEGLPSDCSRRE----VAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~----L~~lF~~fG~-i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
+.|||.|||.+.+... |++|+..||+ +..| .. + .|+|.|.+.+.|..|.+.|+|..+.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~~------~----tAilrF~~~~~A~RA~KRmegEdVfG~-- 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---SG------G----TAILRFPNQEFAERAQKRMEGEDVFGN-- 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T------T-----EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---eC------C----EEEEEeCCHHHHHHHHHhhcccccccc--
Confidence 4799999999988765 5688889976 3332 11 2 899999999999999999999999999
Q ss_pred CcceEEEEeecC
Q 026826 208 DSVKLRLQFARY 219 (232)
Q Consensus 208 ~~~~L~V~~ak~ 219 (232)
+|.|+|...
T Consensus 68 ---kI~v~~~~~ 76 (90)
T PF11608_consen 68 ---KISVSFSPK 76 (90)
T ss_dssp -----EEESS--
T ss_pred ---eEEEEEcCC
Confidence 999999843
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=2.1e-06 Score=81.27 Aligned_cols=82 Identities=27% Similarity=0.477 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
+..+.|||++||..+++.++.++...||.++..+++.+.. .|.++||||.+|.++.-...|+..|||..+.++
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~---~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~---- 359 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA---TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK---- 359 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc---cccccceeeeeeeCCcchhhhhcccchhhhcCc----
Confidence 3467899999999999999999999999999999998864 256667999999999999999999999999999
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
+|.|+.|-.
T Consensus 360 -~lvvq~A~~ 368 (500)
T KOG0120|consen 360 -KLVVQRAIV 368 (500)
T ss_pred -eeEeehhhc
Confidence 899988753
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=1e-05 Score=61.77 Aligned_cols=59 Identities=24% Similarity=0.354 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY 200 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~ 200 (232)
..|+|.+++..++.++|+++|++||.|..|.+..... -|||-|.+.++|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 4789999999999999999999999999998876543 7999999999999999887543
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.08 E-value=8.7e-06 Score=74.67 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+.||+..|+|..++|++|+.+|.+-|..++......+. ++ +|++.+++.++|..|+-.++.+.+.+.+ .
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~k-----mal~q~~sveeA~~ali~~hnh~lgen~----h 482 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RK-----MALPQLESVEEAIQALIDLHNHYLGENH----H 482 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--cc-----eeecccCChhHhhhhccccccccCCCCc----e
Confidence 77999999999999999999999998876554333322 22 9999999999999999999999998874 8
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|+|+|+
T Consensus 483 lRvSFSks 490 (492)
T KOG1190|consen 483 LRVSFSKS 490 (492)
T ss_pred EEEEeecc
Confidence 99999986
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=5e-06 Score=70.98 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..+.|+|.+++..+.+.+|.+.|.++|.+..+.+ .. + ++||+|.+.++|..|++.|+|.++.++
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~-----~----~~~v~Fs~~~da~ra~~~l~~~~~~~~----- 161 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RR-----N----FAFVEFSEQEDAKRALEKLDGKKLNGR----- 161 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hc-----c----ccceeehhhhhhhhcchhccchhhcCc-----
Confidence 3678999999999999999999999999965544 11 2 899999999999999999999999999
Q ss_pred eEEEEee
Q 026826 211 KLRLQFA 217 (232)
Q Consensus 211 ~L~V~~a 217 (232)
+|.+...
T Consensus 162 ~l~~~~~ 168 (216)
T KOG0106|consen 162 RISVEKN 168 (216)
T ss_pred eeeeccc
Confidence 8888543
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.93 E-value=9e-06 Score=72.52 Aligned_cols=82 Identities=26% Similarity=0.304 Sum_probs=71.6
Q ss_pred CcEEE-EcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLF-VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLf-V~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++| |++|++++++++|+..|..+|.|..+++...+. .+.++||+||+|.+...+..|+.. +...+.+.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~---s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~----- 254 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE---SGDSKGFAYVDFSAGNSKKLALND-QTRSIGGR----- 254 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCC---ccchhhhhhhhhhhchhHHHHhhc-ccCcccCc-----
Confidence 44566 999999999999999999999999999887753 577888999999999999999877 88888888
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
++.|++......
T Consensus 255 ~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 255 PLRLEEDEPRPK 266 (285)
T ss_pred ccccccCCCCcc
Confidence 999999987643
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.87 E-value=0.00057 Score=62.42 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~~-~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++.+.|-+|... ++-+.|-.||..||.|..|++++.+. | -|.|+..+..+.+.|+..||+..+.|.
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----g----tamVemgd~~aver~v~hLnn~~lfG~----- 353 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----G----TAMVEMGDAYAVERAVTHLNNIPLFGG----- 353 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----c----eeEEEcCcHHHHHHHHHHhccCccccc-----
Confidence 778999999865 67788999999999999999998764 3 899999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
+|.|.+++-.
T Consensus 354 kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 KLNVCVSKQN 363 (494)
T ss_pred eEEEeecccc
Confidence 8999998754
No 97
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=3.3e-05 Score=73.43 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=62.0
Q ss_pred CcEEEEcCCCCCCC------HHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCS------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~t------e~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
.+.|+|.|+|.--. ..-|..+|+++|+|+.+.++.++. |..+||.|++|.+..+|+.|++.|||+.|+-+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 46899999986322 234668999999999999988775 33667999999999999999999999999988
Q ss_pred CCCcceEEEE
Q 026826 206 DRDSVKLRLQ 215 (232)
Q Consensus 206 ~~~~~~L~V~ 215 (232)
+ ++.|.
T Consensus 134 H----tf~v~ 139 (698)
T KOG2314|consen 134 H----TFFVR 139 (698)
T ss_pred c----eEEee
Confidence 5 56554
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.83 E-value=7.2e-06 Score=77.42 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=69.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..|+|+--|+..+++.+|+++|+.+|.|.+|+|+.++.. +.++|.|||+|.+.+....|| +|.|..+.|. +
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s---~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~-----p 249 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNS---RRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV-----P 249 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccc---hhhcceeEEEEecccchhhHh-hhcCCcccCc-----e
Confidence 579999999999999999999999999999999998731 235569999999999999999 8999999999 9
Q ss_pred EEEEeec
Q 026826 212 LRLQFAR 218 (232)
Q Consensus 212 L~V~~ak 218 (232)
|.|+...
T Consensus 250 v~vq~sE 256 (549)
T KOG0147|consen 250 VIVQLSE 256 (549)
T ss_pred eEecccH
Confidence 9998653
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.81 E-value=7e-05 Score=70.12 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=52.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
..-|=+.+|||+||++||.++|+.|+ |.++.+.....+. .|=|||+|.+.+++++|++ .+-..+..+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~-----sGeA~Ve~~seedv~~Alk-kdR~~mg~R 76 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRP-----SGEAYVEFTSEEDVEKALK-KDRESMGHR 76 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCc-----CcceEEEeechHHHHHHHH-hhHHHhCCc
Confidence 34566789999999999999999995 7777776654333 3389999999999999995 455555554
No 100
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=3.7e-05 Score=70.96 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecC---CCCCCCCCc-------ceEEEEEeCCHHHHHHHHHHhCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK---ESRHPGGDP-------LILCFVDFVSPAHAATAMDALQGY 200 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~---~~~~~~G~~-------~g~aFVeF~~~~~A~~Ai~~LnG~ 200 (232)
++.||.+.|||.+-.-+.|.+||+.||.|+.|+|..- ....++... +-||||+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5899999999999888999999999999999998765 211112222 458999999999999999887543
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.72 E-value=0.00011 Score=66.33 Aligned_cols=82 Identities=17% Similarity=0.327 Sum_probs=63.1
Q ss_pred CcEEEEcCCCCCCCHHHH----H--HHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREV----A--HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L----~--~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
.+-+||-+|++.+..|++ + +.|.+||.|.+|.+.++......-...--.||.|.+.++|..||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 467899999999887773 2 7899999999988765541111111111249999999999999999999999999
Q ss_pred CCCcceEEEEeec
Q 026826 206 DRDSVKLRLQFAR 218 (232)
Q Consensus 206 ~~~~~~L~V~~ak 218 (232)
.|+..|..
T Consensus 194 -----~lkatYGT 201 (480)
T COG5175 194 -----VLKATYGT 201 (480)
T ss_pred -----eEeeecCc
Confidence 99998864
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=8.7e-05 Score=49.68 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHH
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai 194 (232)
+.|-|.+.+.+..+. +...|.+||+|.++.+....+ +.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~---------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN---------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc---------EEEEEECCHHHHHhhC
Confidence 578899999876655 455888999999988873332 9999999999999985
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.64 E-value=0.00026 Score=64.61 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=64.0
Q ss_pred CcEEEEcCC--CCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 132 SSTLFVEGL--PSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nL--p~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
++.|.+.-| -.-+|-+-|..|....|+|..|.|.++. | ..|.|||++.+.|++|.++|||..|...=
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----g---VQAmVEFdsv~~AqrAk~alNGADIYsGC--- 188 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----G---VQAMVEFDSVEVAQRAKAALNGADIYSGC--- 188 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----c---eeeEEeechhHHHHHHHhhcccccccccc---
Confidence 666665544 3469999999999999999999887663 2 38999999999999999999999986531
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.+|+|+|||+.
T Consensus 189 CTLKIeyAkP~ 199 (494)
T KOG1456|consen 189 CTLKIEYAKPT 199 (494)
T ss_pred eeEEEEecCcc
Confidence 38999999864
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.62 E-value=0.00024 Score=66.64 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=52.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~-vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
...|=+.+||+.||++||.++|+-.--+.. |-++.+... ++.|=|||+|++.+.|++|+. -|-..|..+
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rg----R~tGEAfVqF~sqe~ae~Al~-rhre~iGhR 172 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRG----RPTGEAFVQFESQESAEIALG-RHRENIGHR 172 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCC----CcccceEEEecCHHHHHHHHH-HHHHhhccc
Confidence 457888999999999999999997754444 445555543 344589999999999999985 354555555
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.47 E-value=0.0014 Score=63.98 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=61.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeE-EEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~-~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+.|-|.|+|++++-+||.++|..|-.+- +|++..... |.+.|-|.|-|++.++|..|..-|++.+|..+ +
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr-----~ 938 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRNR-----V 938 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCcccce-----e
Confidence 4788999999999999999999995553 455555544 55556899999999999999999999999998 7
Q ss_pred EEEEe
Q 026826 212 LRLQF 216 (232)
Q Consensus 212 L~V~~ 216 (232)
+.|.+
T Consensus 939 V~l~i 943 (944)
T KOG4307|consen 939 VSLRI 943 (944)
T ss_pred EEEEe
Confidence 77653
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00039 Score=65.60 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=49.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcce---EEEEEeCCHHHHHHHHHHh
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLI---LCFVDFVSPAHAATAMDAL 197 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g---~aFVeF~~~~~A~~Ai~~L 197 (232)
+++||||+||++++|++|...|..||.+. |....+...+..--++| |+|+.|+++.....-|.+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 67999999999999999999999999876 45443222222223556 9999999999887666543
No 107
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.33 E-value=0.00047 Score=68.69 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
++.+||++|..++....|...|..||.|..|.+-.... ||+|.|++...|+.|++.|-|..|.+-+ +.
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~---------yayi~yes~~~aq~a~~~~rgap~G~P~---~r 522 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP---------YAYIQYESPPAAQAATHDMRGAPLGGPP---RR 522 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc---------ceeeecccCccchhhHHHHhcCcCCCCC---cc
Confidence 78999999999999999999999999999887754432 9999999999999999999999998764 26
Q ss_pred EEEEeecCCCC
Q 026826 212 LRLQFARYPGA 222 (232)
Q Consensus 212 L~V~~ak~~~~ 222 (232)
|+|.|+..++.
T Consensus 523 ~rvdla~~~~~ 533 (975)
T KOG0112|consen 523 LRVDLASPPGA 533 (975)
T ss_pred cccccccCCCC
Confidence 99999987653
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0014 Score=61.87 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=56.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhc-CCCCeEEEEEecC-CCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026826 125 VPLPPDASSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (232)
Q Consensus 125 ~~~p~~~~~tLfV~nLp~~~te~~L~~lF~-~fG~i~~vrl~~~-~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~ 196 (232)
...+-|+.+|||||+||.-++.+||..||+ -||.|..+-|-.| +-|= ++|=+=|.|.+..+-.+||++
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY----PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY----PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC----CCCcceeeecccHHHHHHHhh
Confidence 345566789999999999999999999998 8999999988777 3322 334788999999999999875
No 109
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.12 E-value=0.0035 Score=45.83 Aligned_cols=55 Identities=18% Similarity=0.413 Sum_probs=43.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln 198 (232)
....||+ .|.+....||.++|+.||.|. |..+.+. -|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 4566776 999999999999999999986 5566553 69999999999999998885
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.10 E-value=0.0019 Score=61.47 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=48.5
Q ss_pred HHHHhcCCCCeEEEEEecC-CCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEee
Q 026826 149 VAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFA 217 (232)
Q Consensus 149 L~~lF~~fG~i~~vrl~~~-~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~a 217 (232)
++.-+.+||.|..|.+... ...+. .-..|..||+|.+.++++.|+++|+|.++.++ ++..+|-
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~-~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR-----tVvtsYy 489 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENP-VPGTGKVFVEFADTEDSQRAMEELTGRKFANR-----TVVASYY 489 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCc-CCCcccEEEEecChHHHHHHHHHccCceeCCc-----EEEEEec
Confidence 3344678999999998876 22221 11235899999999999999999999999999 7777763
No 111
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.08 E-value=0.00058 Score=65.48 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=62.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~-~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
.+++.|||.||-.-+|.-+|+.|+. .+|.|.+. ..++-+ ..|||.|.+.++|.+.+.+|||...-.. .
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIK-------ShCyV~yss~eEA~atr~AlhnV~WP~s--N 510 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIK-------SHCYVSYSSVEEAAATREALHNVQWPPS--N 510 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhh-------cceeEecccHHHHHHHHHHHhccccCCC--C
Confidence 3589999999999999999999998 55556655 233321 1799999999999999999999998655 3
Q ss_pred cceEEEEeec
Q 026826 209 SVKLRLQFAR 218 (232)
Q Consensus 209 ~~~L~V~~ak 218 (232)
.+.|.+.|..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 3489999975
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.02 E-value=0.00032 Score=69.47 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
...|||.|+|+..|.++|+.+|..+|.+++++++..+. |+++|.|||+|.++.+|..++...+...+..+ .
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~-----~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKREN-----N 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhhhc-----C
Confidence 35799999999999999999999999999999888765 66777999999999999999888777777777 6
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
+.|..+.+
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 67766443
No 113
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.99 E-value=0.00098 Score=61.17 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=56.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
.|-|.||.+.+|.++++.||...|.|.+++|........--...-.|||.|.+..++..|- .|.++++-+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr 79 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR 79 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeee
Confidence 7999999999999999999999999999998774311111111128999999999998885 7777777776
No 114
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.91 E-value=0.0061 Score=46.18 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=50.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCC-------CCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-------SRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE 204 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~-------~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g 204 (232)
.+.|.|=+.|+. ....+.+.|++||.|.+..-..+. ....++ .+-.|.|.++.+|.+|| .-||..|.+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~---NWi~I~Y~~~~~A~rAL-~~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG---NWIHITYDNPLSAQRAL-QKNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT---TEEEEEESSHHHHHHHH-TTTTEEETT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC---CEEEEECCCHHHHHHHH-HhCCeEEcC
Confidence 456778889887 566788899999999887511100 000112 19999999999999999 579999998
Q ss_pred CCCCcceEEEEeec
Q 026826 205 HDRDSVKLRLQFAR 218 (232)
Q Consensus 205 ~~~~~~~L~V~~ak 218 (232)
. ..+-|.+.+
T Consensus 81 ~----~mvGV~~~~ 90 (100)
T PF05172_consen 81 S----LMVGVKPCD 90 (100)
T ss_dssp C----EEEEEEE-H
T ss_pred c----EEEEEEEcH
Confidence 7 134566653
No 115
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.87 E-value=0.0011 Score=60.21 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=57.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG--~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
-.+||+||-|.+|++||.+.....| .|.++++..++ ..|.+||||+|...+..+.++-|+.|--+.|.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---TNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---cCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 4799999999999999998877654 34555555443 23677789999999999999999999999999985
No 116
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.83 E-value=0.00086 Score=62.13 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=58.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCCCCCcce
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR-FDEHDRDSVK 211 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~-l~g~~~~~~~ 211 (232)
+.|||+||.+.++..+|+.+|...---..-.++.+. | |+||++.+...|.+|++.++|+. +.|+ .
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-----g----yafvd~pdq~wa~kaie~~sgk~elqGk-----r 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-----G----YAFVDCPDQQWANKAIETLSGKVELQGK-----R 67 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-----c----eeeccCCchhhhhhhHHhhchhhhhcCc-----e
Confidence 479999999999999999999754111111111111 2 99999999999999999999954 6677 8
Q ss_pred EEEEeecCCCCCC
Q 026826 212 LRLQFARYPGARS 224 (232)
Q Consensus 212 L~V~~ak~~~~r~ 224 (232)
+.|+++-.+..|+
T Consensus 68 ~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 68 QEVEHSVPKKQRS 80 (584)
T ss_pred eeccchhhHHHHh
Confidence 9999886654443
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.70 E-value=0.0011 Score=57.68 Aligned_cols=75 Identities=15% Similarity=0.269 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCC-----CC-CC---CcceEEEEEeCCHHHHHHHHHHhCCcee
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESR-----HP-GG---DPLILCFVDFVSPAHAATAMDALQGYRF 202 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~-----~~-~G---~~~g~aFVeF~~~~~A~~Ai~~LnG~~l 202 (232)
.-.||+++||+...-.-|++||++||.|-.|.|...... .+ +| ...-=+.|+|.+...|..+.+.||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999988764411 11 11 1112368999999999999999999999
Q ss_pred CCCC
Q 026826 203 DEHD 206 (232)
Q Consensus 203 ~g~~ 206 (232)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9984
No 118
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.70 E-value=0.0062 Score=55.18 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=58.5
Q ss_pred CCcEEEEcCCC----CCCC-------HHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026826 131 ASSTLFVEGLP----SDCS-------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (232)
Q Consensus 131 ~~~tLfV~nLp----~~~t-------e~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG 199 (232)
..+||.|.||= .+.+ +++|.+-..+||.|.+|.|- + +|+.| .+-|.|.+.++|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d--~hPdG----vvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D--RHPDG----VVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c--cCCCc----eeEEEeCChHHHHHHHHHhcC
Confidence 36789999972 2333 34566668899999998764 3 34445 999999999999999999999
Q ss_pred ceeCCCCCCcceEEEEee
Q 026826 200 YRFDEHDRDSVKLRLQFA 217 (232)
Q Consensus 200 ~~l~g~~~~~~~L~V~~a 217 (232)
.-|+|+ .|..+..
T Consensus 337 R~fdgR-----ql~A~i~ 349 (382)
T KOG1548|consen 337 RWFDGR-----QLTASIW 349 (382)
T ss_pred eeecce-----EEEEEEe
Confidence 999999 7876654
No 119
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.65 E-value=0.045 Score=45.95 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE 204 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g 204 (232)
...|.|.+||+.-+++||++...+-|.+....+..+ | .+.|+|...++.+-|+..|+..++..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g----~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G----VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c----ceeeeeeehhhHHHHHHhhccccccC
Confidence 468999999999999999999999999998887766 2 88999999999999999999887754
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.59 E-value=0.013 Score=53.83 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=46.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCC----CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPF----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~f----G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~ 196 (232)
-.|-+.+||+++++.++.++|.+- +..+.|-++...+++.. |=|||.|..+++|+.|+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpT----GdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPT----GDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcc----cceEEEecCHHHHHHHHHH
Confidence 355678999999999999999632 34556767766554444 4899999999999999853
No 121
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.50 E-value=0.0088 Score=49.74 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcC-CCCe---EEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRP-FVGY---KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~-fG~i---~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
..+|.|++||+++||+++.+.+.. ++.. ..+.-....... .-....-|||.|.+.+++..-++.++|+.+...+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~-~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSF-KPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSS-TTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccC-CCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 569999999999999999998877 6665 334311221000 00122479999999999999999999999876644
Q ss_pred CcceEEEEeecCC
Q 026826 208 DSVKLRLQFARYP 220 (232)
Q Consensus 208 ~~~~L~V~~ak~~ 220 (232)
...+..|+||-..
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 4456788988553
No 122
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.32 E-value=0.016 Score=40.02 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=44.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCC---CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPF---VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~f---G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L 197 (232)
.+|+|.|+. +++.++++..|..| .....|..+.+. -|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 489999996 68889999999988 234568888875 4889999999999999765
No 123
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.32 E-value=0.015 Score=46.81 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=44.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeec
Q 026826 148 EVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 148 ~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak 218 (232)
+|.+.|..||.+.=||++.+ .-+|.|.+-++|.+|+ .|+|.++.|+ .|+|....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaal-s~dg~~v~g~-----~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAAL-SLDGIQVNGR-----TLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHH-HGCCSEETTE-----EEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHH-ccCCcEECCE-----EEEEEeCC
Confidence 67788999999988888765 4689999999999999 6999999999 89987653
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.11 E-value=0.0012 Score=65.80 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+.|||++||+..+++.+|+.+|..+|.|.+|.|-...-+.-. -|+||.|.+...+-.|+..+.+..|...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es----a~~f~~~~n~dmtp~ak~e~s~~~I~~g----- 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES----AYAFVSLLNTDMTPSAKFEESGPLIGNG----- 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc----chhhhhhhccccCcccchhhcCCccccC-----
Confidence 3689999999999999999999999999999988655321111 2999999999999999999998888666
Q ss_pred eEEEEee
Q 026826 211 KLRLQFA 217 (232)
Q Consensus 211 ~L~V~~a 217 (232)
.+++-+.
T Consensus 442 ~~r~glG 448 (975)
T KOG0112|consen 442 THRIGLG 448 (975)
T ss_pred ccccccc
Confidence 5555555
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.98 E-value=0.017 Score=53.16 Aligned_cols=70 Identities=16% Similarity=0.326 Sum_probs=55.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCC-eE--EEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVG-YK--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~-i~--~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
...|-+.+||...+.++|.++|..|-. |. -|.++.+..++..| -|||+|.+.+.|.+|....+.+....+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG----eAFIqm~nae~a~aaaqk~hk~~mk~R 352 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG----EAFIQMRNAERARAAAQKCHKKLMKSR 352 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh----hhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 557889999999999999999998854 22 26777776555554 899999999999999887776666555
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.95 E-value=0.0098 Score=58.31 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 026826 126 PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE 204 (232)
Q Consensus 126 ~~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~-vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g 204 (232)
+.|-.....|||..||..+++.++.+.|...-.|++ |.|..... ++..+.|||+|.+++++.+|...-+-+-+..
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~----~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~ 503 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT----DLLRPAAFVAFIHPTAPLTASSVKTKFYPGH 503 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc----ccccchhhheeccccccchhhhcccccccCc
Confidence 345556889999999999999999999998888877 55544433 2333499999999999988875544444444
Q ss_pred CCCCcceEEEEe
Q 026826 205 HDRDSVKLRLQF 216 (232)
Q Consensus 205 ~~~~~~~L~V~~ 216 (232)
+ .|+|.-
T Consensus 504 r-----~irv~s 510 (944)
T KOG4307|consen 504 R-----IIRVDS 510 (944)
T ss_pred e-----EEEeec
Confidence 4 788863
No 127
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.82 E-value=0.0042 Score=54.12 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=45.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeec
Q 026826 155 PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 155 ~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak 218 (232)
+||+|+++.|-.+-.-|-.| =++|.|...++|++|++.||+--+.|+ +|..++.-
T Consensus 92 kygEiee~~Vc~Nl~~hl~G----NVYV~f~~Ee~ae~a~~~lnnRw~~G~-----pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVG----NVYVKFRSEEDAEAALEDLNNRWYNGR-----PIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhcccchhhhh----hhhhhcccHHHHHHHHHHHcCccccCC-----cceeeecC
Confidence 89999998665544334333 799999999999999999999999999 89888863
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.58 E-value=0.013 Score=51.11 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln 198 (232)
..|||.||..-++.+.|.+-|+.||+|....+..+...+..+ =++|+|...-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~----eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR----EGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc----cchhhhhcchhHHHHHHHhc
Confidence 589999999999999999999999999876665555333333 78999999999999998774
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.36 E-value=0.0013 Score=65.33 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=53.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR 201 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~ 201 (232)
..++||.||+..+.+++|...|..++.+..+++..... .++.+|.|+|+|..+++|.+||....+..
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n---~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN---EKRFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh---ccccccceeeEeecCCchhhhhhhhhhhh
Confidence 35899999999999999999999999988877662221 13444599999999999999996544433
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.29 E-value=0.38 Score=37.00 Aligned_cols=72 Identities=13% Similarity=0.239 Sum_probs=53.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC-CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~f-G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
+..+.+...|.-++-++|..+.+.+ ..|..++|+.+....+ -.+.+.|.+.++|.+-.+.+||+.+..-++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnr-----ymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE 85 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNR-----YMVLIKFRDQESADEFYEEFNGKPFNSLEPE 85 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCce-----EEEEEEECCHHHHHHHHHHhCCCccCCCCCc
Confidence 3445556666667777887777776 4466788888754322 3899999999999999999999999766443
No 131
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.18 E-value=0.057 Score=48.23 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=49.8
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEee
Q 026826 146 RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFA 217 (232)
Q Consensus 146 e~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~a 217 (232)
++++++-.++||.|..|.|....+.. -+-..--||+|+..++|.+|+--|||.-|.|+ .++..|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p--~deavRiFveF~r~e~aiKA~VdlnGRyFGGr-----~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQP--EDEAVRIFVEFERVESAIKAVVDLNGRYFGGR-----VVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCc--cchhheeeeeeccHHHHHHHHHhcCCceecce-----eeeheec
Confidence 34667888999999999877654211 01112579999999999999999999999999 7776654
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.09 E-value=0.011 Score=53.34 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=61.4
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHhcCCCCeEEEEEecCCC--CCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKES--RHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~---~lF~~fG~i~~vrl~~~~~--~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
.+-+||-+|+..+..+++. +.|.+||.|.+|.+..+.. ...++ . .-++|.|...++|..||...+|..++++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~-~s~yITy~~~eda~rci~~v~g~~~dg~- 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-T-CSVYITYEEEEDADRCIDDVDGFVDDGR- 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-C-CcccccccchHhhhhHHHHhhhHHhhhh-
Confidence 4678999999876655443 6799999999988776552 11122 1 2389999999999999999999999999
Q ss_pred CCcceEEEEeecC
Q 026826 207 RDSVKLRLQFARY 219 (232)
Q Consensus 207 ~~~~~L~V~~ak~ 219 (232)
.|+..+.-.
T Consensus 154 ----~lka~~gtt 162 (327)
T KOG2068|consen 154 ----ALKASLGTT 162 (327)
T ss_pred ----hhHHhhCCC
Confidence 777766543
No 133
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.03 E-value=0.063 Score=45.03 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=46.6
Q ss_pred CHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCCCCCcceEEEEeecCC
Q 026826 145 SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--GYRFDEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 145 te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln--G~~l~g~~~~~~~L~V~~ak~~ 220 (232)
..+.|+++|..++.+..+..++.-. -..|.|.+.+.|..|+..|+ +..+.+. .|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~-----~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFNGK-----RLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEETTE-----E-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccCCC-----ceEEEEcccc
Confidence 4578999999999999888776542 57899999999999999999 9999999 8999998543
No 134
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.82 E-value=0.017 Score=57.75 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=62.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
+.++.|.+-+.+..-|..+|++||.+.+.+.+.+-. .|.|+|.+.+.|..|+++|+|+++... +.+.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~---g~Ps~ 367 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVT---GAPSR 367 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCccccc---CCcee
Confidence 445566666888889999999999999999887764 899999999999999999999987543 12799
Q ss_pred EEeecCC
Q 026826 214 LQFARYP 220 (232)
Q Consensus 214 V~~ak~~ 220 (232)
|.||+.-
T Consensus 368 V~~ak~~ 374 (1007)
T KOG4574|consen 368 VSFAKTL 374 (1007)
T ss_pred EEecccc
Confidence 9999853
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.57 E-value=0.066 Score=52.28 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
+..++||+|+...+..+-++.+...||-|..+..+. |+|.+|.....+..|+..|+-..+++.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 367999999999999999999999999877654321 889999999999999998888888777
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.37 E-value=0.23 Score=35.09 Aligned_cols=67 Identities=21% Similarity=0.403 Sum_probs=40.8
Q ss_pred EEEEc-CCCCCCCHHHHHHHhcCCCCe-----EEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 134 TLFVE-GLPSDCSRREVAHIFRPFVGY-----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 134 tLfV~-nLp~~~te~~L~~lF~~fG~i-----~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
+|||. +--..++..+|..++..-+.| -.|+|..+ |+||+-.. +.|+.+++.|++..+.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk-- 67 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGK-- 67 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCe--
Confidence 56662 224568899999998877665 35666544 89999875 578899999999999999
Q ss_pred CcceEEEEee
Q 026826 208 DSVKLRLQFA 217 (232)
Q Consensus 208 ~~~~L~V~~a 217 (232)
+|+|+.|
T Consensus 68 ---~v~ve~A 74 (74)
T PF03880_consen 68 ---KVRVERA 74 (74)
T ss_dssp ------EEE-
T ss_pred ---eEEEEEC
Confidence 8999864
No 137
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.86 E-value=0.19 Score=48.37 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=52.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc--CCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh-------CCcee
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFR--PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-------QGYRF 202 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~--~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L-------nG~~l 202 (232)
-+.|.+.-||..+..|+++.||+ .|..+++|.+..+. --||+|++..+|+.|.+.| +|+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 45677899999999999999996 48889999887764 3699999999999998654 55555
Q ss_pred CCC
Q 026826 203 DEH 205 (232)
Q Consensus 203 ~g~ 205 (232)
+-+
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 554
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.47 E-value=0.34 Score=39.16 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=52.7
Q ss_pred CcEEEEcCCCCCCC-HHHHH---HHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 132 SSTLFVEGLPSDCS-RREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 132 ~~tLfV~nLp~~~t-e~~L~---~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
-.||.|.=|..++. .+||+ .-++.||+|.+|.+--.. -|.|.|.+..+|-.|+.+++. ..-|.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s-~~pgt-- 152 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQS-RAPGT-- 152 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcC-CCCCc--
Confidence 56888877766644 34444 456789999998764332 699999999999999999987 44555
Q ss_pred CcceEEEEeec
Q 026826 208 DSVKLRLQFAR 218 (232)
Q Consensus 208 ~~~~L~V~~ak 218 (232)
.++..|..
T Consensus 153 ---m~qCsWqq 160 (166)
T PF15023_consen 153 ---MFQCSWQQ 160 (166)
T ss_pred ---eEEeeccc
Confidence 67777754
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=0.14 Score=49.10 Aligned_cols=85 Identities=15% Similarity=0.298 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhc----------------------------CCCCeEEEEEecCCCCCCCCCcceEEEEEe
Q 026826 133 STLFVEGLPSDCSRREVAHIFR----------------------------PFVGYKEVRLVSKESRHPGGDPLILCFVDF 184 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~----------------------------~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF 184 (232)
+++-|+|||..-+..+|..|.. ..|...-+.|+.|-.. ...+|||||.|
T Consensus 362 tt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~n---kcNvGYAFINm 438 (549)
T KOG4660|consen 362 TTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKN---KCNVGYAFINM 438 (549)
T ss_pred hhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEecccccc---ccccceeEEee
Confidence 4566666666555555555543 2344444555555421 12346999999
Q ss_pred CCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecCCC
Q 026826 185 VSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPG 221 (232)
Q Consensus 185 ~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~~~ 221 (232)
.+++++..+.+++||+....-. ..+...|.||+-++
T Consensus 439 ~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArIQG 474 (549)
T KOG4660|consen 439 TSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARIQG 474 (549)
T ss_pred cCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhhhc
Confidence 9999999999999998765442 22377899998664
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.48 E-value=0.34 Score=43.45 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=45.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 135 LfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
|-|-++|+. .-..|..+|++||.|++.....+ |+ |-+|.|.+..+|.+||. .||..|++.
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gN---wMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GN---WMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------Cc---eEEEEecchhHHHHhhh-hcCeeeccc
Confidence 444566654 33567789999999998655422 22 99999999999999995 688888886
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.12 E-value=1.1 Score=42.38 Aligned_cols=73 Identities=16% Similarity=0.357 Sum_probs=61.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC-CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~f-G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
++.|+|=.+|..+|--||..+...| -.|.+++++.+....+ -...|.|.+.++|..-.+.+||..|..-++..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr-----ymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~ 147 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR-----YMVLIKFRDQADADTFYEEFNGKQFNSLEPEV 147 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce-----EEEEEEeccchhHHHHHHHcCCCcCCCCCccc
Confidence 7899999999999999999988766 5688999998754332 27899999999999999999999998765543
No 142
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.54 E-value=2.3 Score=29.70 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=41.0
Q ss_pred CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 143 DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 143 ~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
.++-++++..+..|.- . +|..++. | =||.|.+.++|+++.+..+|..+...
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~t----G-----fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRT----G-----FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCC----E-----EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 4788999999999963 3 3444543 3 48999999999999999999998776
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.60 E-value=0.35 Score=45.75 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=57.5
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~~-~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+.|-+.-.|+. -+.++|...|.+||.|..|.+-.... -|.|+|.+..+|-.|. ...+..|+++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~---------~a~vTF~t~aeag~a~-~s~~avlnnr----- 436 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL---------HAVVTFKTRAEAGEAY-ASHGAVLNNR----- 436 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh---------hheeeeeccccccchh-ccccceecCc-----
Confidence 445556555555 35678999999999999987754421 6899999999997775 5799999999
Q ss_pred eEEEEeecC
Q 026826 211 KLRLQFARY 219 (232)
Q Consensus 211 ~L~V~~ak~ 219 (232)
.|+|-|-+.
T Consensus 437 ~iKl~whnp 445 (526)
T KOG2135|consen 437 FIKLFWHNP 445 (526)
T ss_pred eeEEEEecC
Confidence 899999876
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.42 E-value=0.41 Score=42.83 Aligned_cols=80 Identities=19% Similarity=0.063 Sum_probs=60.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.+++||+++.+++.+.++..+|...|....+.+..... ....++++.|.|...+.+..|+.....+.+... .
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~---~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~-----~ 159 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED---SLSSKGGLSVHFAGKSQFFAALEESGSKVLDGN-----K 159 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhcc---ccccccceeeccccHHHHHHHHHhhhccccccc-----c
Confidence 67999999999999999999999999888777665331 123445999999999999999965555566665 4
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
+...+...
T Consensus 160 ~~~dl~~~ 167 (285)
T KOG4210|consen 160 GEKDLNTR 167 (285)
T ss_pred ccCccccc
Confidence 55444433
No 145
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=83.48 E-value=0.84 Score=40.76 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=55.6
Q ss_pred CcEEEEcCCCC------------CCCHHHHHHHhcCCCCeEEEEEec-CC------CCCCCCCcceEE---------EEE
Q 026826 132 SSTLFVEGLPS------------DCSRREVAHIFRPFVGYKEVRLVS-KE------SRHPGGDPLILC---------FVD 183 (232)
Q Consensus 132 ~~tLfV~nLp~------------~~te~~L~~lF~~fG~i~~vrl~~-~~------~~~~~G~~~g~a---------FVe 183 (232)
..|||+.+||- -.+++-|+..|+.||.|..|.|+. +. ++.++=..+||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 35788887774 246778999999999999988764 22 122111223343 455
Q ss_pred eCCHHHHHHHHHHhCCceeCCCCC---CcceEEEEeecCC
Q 026826 184 FVSPAHAATAMDALQGYRFDEHDR---DSVKLRLQFARYP 220 (232)
Q Consensus 184 F~~~~~A~~Ai~~LnG~~l~g~~~---~~~~L~V~~ak~~ 220 (232)
|-....-..|+.+|.|.++.-+-- .-..++|+|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 655566677888888876532211 1126788887664
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.60 E-value=10 Score=37.06 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=57.8
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhcCC----CCeEEEEEecCCCC-------CCCCC----------------------
Q 026826 130 DASSTLFVEGLPSD-CSRREVAHIFRPF----VGYKEVRLVSKESR-------HPGGD---------------------- 175 (232)
Q Consensus 130 ~~~~tLfV~nLp~~-~te~~L~~lF~~f----G~i~~vrl~~~~~~-------~~~G~---------------------- 175 (232)
..+++|-|-||.|+ +..++|.-+|..| |.|.+|.|-...-+ +-.|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45789999999996 8889999999877 57888876543200 00011
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 176 ---------------PLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 176 ---------------~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
-.-||.|+|.+.+.|.+..+..+|..+...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 124799999999999999999999999765
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=74.20 E-value=0.14 Score=47.84 Aligned_cols=75 Identities=12% Similarity=0.310 Sum_probs=63.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
++.+-|.|+|+...++.|..|..+||.+..|..+......- ..-|+|.+.+.+..||..|||..+... .
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta------vvnvty~~~~~~~~ai~kl~g~Q~en~-----~ 148 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA------VVNVTYSAQQQHRQAIHKLNGPQLENQ-----H 148 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH------HHHHHHHHHHHHHHHHHhhcchHhhhh-----h
Confidence 67899999999999999999999999999987765442110 345789999999999999999999998 8
Q ss_pred EEEEee
Q 026826 212 LRLQFA 217 (232)
Q Consensus 212 L~V~~a 217 (232)
++|.|-
T Consensus 149 ~k~~Yi 154 (584)
T KOG2193|consen 149 LKVGYI 154 (584)
T ss_pred hhcccC
Confidence 898874
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=72.11 E-value=0.57 Score=43.47 Aligned_cols=66 Identities=18% Similarity=0.098 Sum_probs=53.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
..||+|.+|+..+...++-++|..+|++...++..+... .+|-|+|........|+ .++|..+.-.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s-------~~c~~sf~~qts~~hal-r~~gre~k~q 216 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRS-------SSCSHSFRKQTSSKHAL-RSHGRERKRQ 216 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCC-------cchhhhHhhhhhHHHHH-Hhcchhhhhh
Confidence 468999999999999999999999999987776654321 27889999988888887 4677766544
No 149
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.40 E-value=4.4 Score=33.97 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=52.3
Q ss_pred cEEEEcCCCCCCC-H----HHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 133 STLFVEGLPSDCS-R----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 133 ~tLfV~nLp~~~t-e----~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
+++.+.+++.++- + .....+|.+|-+....+++.... +.-|.|.+++.|+.|...++.+.|.+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfr---------rvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFR---------RVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhc---------eeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 4677778776532 2 23446777766655555544331 5679999999999999999999999984
Q ss_pred CcceEEEEeecC
Q 026826 208 DSVKLRLQFARY 219 (232)
Q Consensus 208 ~~~~L~V~~ak~ 219 (232)
.++.-|+..
T Consensus 81 ---~~k~yfaQ~ 89 (193)
T KOG4019|consen 81 ---ELKLYFAQP 89 (193)
T ss_pred ---eEEEEEccC
Confidence 677777754
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=67.91 E-value=1.5 Score=37.94 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=56.9
Q ss_pred CcEEEEcC----CCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEG----LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~n----Lp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
..+++.|+ |...++++.+..+|++-+.+..+++..+...+ ++-+.||++.-..+.-.++...++..+--+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~r----nrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGR----NRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCC----ccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 45788888 88899999999999999999999998876422 223899999988888888888887766555
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.47 E-value=3.8 Score=31.73 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=30.0
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHH-HHHH
Q 026826 134 TLFVEGLPSD---------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA-ATAM 194 (232)
Q Consensus 134 tLfV~nLp~~---------~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A-~~Ai 194 (232)
++.|-|++.. .+.++|.+.|+.|.+++ |+.+..+..|.+ ++.|+|...-.. ..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g-----~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTG-----FAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEE-----EEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcE-----EEEEEECCChHHHHHHH
Confidence 5667777543 35678999999998875 666666655543 999999975444 4444
No 152
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.52 E-value=11 Score=33.81 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=36.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHH
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~ 189 (232)
.+-|+|+||+.++.-.||+..+.+-+.+- .+|..+ ++.+ -||..|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk--g~~~-----k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK--GHFG-----KCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeee--cCCc-----ceeEecCCccC
Confidence 35699999999999999999888765432 334333 3433 69999988643
No 153
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=55.79 E-value=19 Score=29.45 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~ 168 (232)
....+++.+++..++..++..+|..++.+..+.+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 46799999999999999999999999999777666554
No 154
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.34 E-value=29 Score=32.72 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i-~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~ 195 (232)
...|=|-++|.....+||..+|+.|++- -+|.++-+. .+|-.|.+...|..|+-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhh
Confidence 3578899999999999999999999652 345555443 79999999999999983
No 155
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=50.21 E-value=2.7 Score=40.72 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=54.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~-~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
.++|||.|++++++-.+|..+++.+..+..+-+-... .+.... +..|.|.---....|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r----~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFER----RLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHH----HhhHhhccccchHHHHHHhhhcccccc
Confidence 4689999999999999999999999888877654432 111111 678999888888888889999888776
No 156
>PF14893 PNMA: PNMA
Probab=47.50 E-value=15 Score=33.56 Aligned_cols=29 Identities=31% Similarity=0.761 Sum_probs=22.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc----CCCCeE
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFR----PFVGYK 160 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~----~fG~i~ 160 (232)
-+.|.|.+||.+|++.||++.+. +.|.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yr 50 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYR 50 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccce
Confidence 46799999999999999987754 455543
No 157
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.79 E-value=30 Score=32.18 Aligned_cols=73 Identities=14% Similarity=0.289 Sum_probs=48.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~-vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
-..+.|.+||+..++++|.+-..+|-.=.. ..+....... .-...+.++|.|.+.++...-.+.++|+.+...
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~-~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESL-RNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccc-hhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 357889999999999998877776543211 1122111000 001134899999999998877788899887654
No 158
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=43.70 E-value=90 Score=31.01 Aligned_cols=69 Identities=9% Similarity=0.143 Sum_probs=51.2
Q ss_pred cEEEEc-CCCCCCCHHHHHHHhcCCCCeE-----EEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 133 STLFVE-GLPSDCSRREVAHIFRPFVGYK-----EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 133 ~tLfV~-nLp~~~te~~L~~lF~~fG~i~-----~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
.++||. +=-..++..+|..+...-+.|. .|+|..+ |.||+-. ...|...++.|++..+.++
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-----------~s~v~~~-~~~~~~~~~~~~~~~~~~~- 553 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-----------HSTIELP-KGMPGEVLQHFTRTRILNK- 553 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-----------ceEEEcC-hhhHHHHHHHhccccccCC-
Confidence 457763 2345688888888887666554 3455433 8999986 4568889999999999999
Q ss_pred CCcceEEEEeec
Q 026826 207 RDSVKLRLQFAR 218 (232)
Q Consensus 207 ~~~~~L~V~~ak 218 (232)
.|.|+.++
T Consensus 554 ----~~~~~~~~ 561 (629)
T PRK11634 554 ----PMNMQLLG 561 (629)
T ss_pred ----ceEEEECC
Confidence 89999875
No 159
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=39.24 E-value=1.3e+02 Score=29.50 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=25.7
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecCCCCCCCCCC
Q 026826 179 LCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPGARSGGGH 228 (232)
Q Consensus 179 ~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~~~~r~ggg~ 228 (232)
-| +.|+++++|.+|+. +|..-.+. .|.|.|. ++++++|.
T Consensus 385 ~A-~VF~see~a~~ai~--~g~i~~gd-----VvViRye---GPkGgPGM 423 (535)
T TIGR00110 385 PA-KVFESEEEALEAIL--GGKIKEGD-----VVVIRYE---GPKGGPGM 423 (535)
T ss_pred eE-EEECCHHHHHHHHh--cCCCCCCe-----EEEEeCC---CCCCCCCh
Confidence 55 67999999999984 34444444 6777766 44555554
No 160
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.28 E-value=17 Score=31.72 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=27.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEE
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR 163 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vr 163 (232)
..+||+-|+|..+|++.|..+.+++|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 56899999999999999999999998665443
No 161
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=37.11 E-value=1.7e+02 Score=28.95 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=26.4
Q ss_pred EEEEEeCCHHHHHHHHHHhCCce-e-CCCCCCcceEEEEeecCCCCCCCCCCC
Q 026826 179 LCFVDFVSPAHAATAMDALQGYR-F-DEHDRDSVKLRLQFARYPGARSGGGHR 229 (232)
Q Consensus 179 ~aFVeF~~~~~A~~Ai~~LnG~~-l-~g~~~~~~~L~V~~ak~~~~r~ggg~r 229 (232)
-| +.|+++++|.+|+ ++|.. | .|. .|.|.|. ++++++|.+
T Consensus 403 ~A-~VF~see~a~~ai--~~g~i~i~~gd-----VvVIRye---GPkGgPGMp 444 (571)
T PRK06131 403 RA-VVFEGYEDYKARI--DDPDLDVDEDT-----VLVLRNA---GPKGYPGMP 444 (571)
T ss_pred ee-EEECCHHHHHHHH--hCCCcCCCCCe-----EEEEeCC---CCCCCCCCc
Confidence 45 6799999999998 45543 3 343 6667665 556666654
No 162
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.59 E-value=1.5e+02 Score=19.20 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=39.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCH----HHHHHHHHH
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP----AHAATAMDA 196 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~----~~A~~Ai~~ 196 (232)
||.|.||.=.--...++..+...-+|.++.+-.... -+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~---------~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK---------TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT---------EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC---------EEEEEEecCCCCHHHHHHHHHH
Confidence 577888876667788999999999999998866542 677888754 444555544
No 163
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=28.79 E-value=85 Score=28.38 Aligned_cols=82 Identities=13% Similarity=0.264 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCC----CCCcceEEEEEeCCHHHHHH----HHHHhCCc--e
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHP----GGDPLILCFVDFVSPAHAAT----AMDALQGY--R 201 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~----~G~~~g~aFVeF~~~~~A~~----Ai~~LnG~--~ 201 (232)
++.|...|+..+++--++...|-+||+|+.|.|+.+..... .-+.+..+.+.|-+.+.+.. .++.|..+ .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999998888889999999999999998751100 01122378899998776542 23333332 2
Q ss_pred eCCCCCCcceEEEEeec
Q 026826 202 FDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 202 l~g~~~~~~~L~V~~ak 218 (232)
+... .|.|.|..
T Consensus 95 L~S~-----~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSE-----SLTLSFVS 106 (309)
T ss_pred cCCc-----ceeEEEEE
Confidence 3444 78888764
No 164
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.48 E-value=1.3e+02 Score=21.88 Aligned_cols=56 Identities=7% Similarity=0.093 Sum_probs=38.2
Q ss_pred EEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026826 135 LFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (232)
Q Consensus 135 LfV~nLp~~~te~~L~~lF~~f--G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~ 196 (232)
-|+--.+.+.+..++++.++.+ -.+.+|+......+- + =|||.+..-..|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-K-----KA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-K-----KAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-E-----EEEEEeCCCCcHHHHHHh
Confidence 3444567889999999888775 456677665544221 1 599999988888766543
No 165
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.04 E-value=38 Score=20.82 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhcCCC
Q 026826 142 SDCSRREVAHIFRPFV 157 (232)
Q Consensus 142 ~~~te~~L~~lF~~fG 157 (232)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 166
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=27.28 E-value=51 Score=32.05 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=31.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecC
Q 026826 179 LCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARY 219 (232)
Q Consensus 179 ~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~ 219 (232)
++++.|+++..+.+|+..++|....+. .++++-+..
T Consensus 65 ~~~~~~et~~~~~ka~~~v~g~~~k~~-----~~~~~~~~~ 100 (534)
T KOG2187|consen 65 YAYVTFETPSDAGKAINLVDGLLYKGF-----ILRVQLGAT 100 (534)
T ss_pred ceEEEEeccchhhhHHHHHhhhhhhcc-----hhhhhhccc
Confidence 999999999999999999999988887 677665543
No 167
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=27.10 E-value=2.9e+02 Score=27.42 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=26.4
Q ss_pred EEEEEeCCHHHHHHHHHHhCCc-eeCCCCCCcceEEEEeecCCCCCCCCCCC
Q 026826 179 LCFVDFVSPAHAATAMDALQGY-RFDEHDRDSVKLRLQFARYPGARSGGGHR 229 (232)
Q Consensus 179 ~aFVeF~~~~~A~~Ai~~LnG~-~l~g~~~~~~~L~V~~ak~~~~r~ggg~r 229 (232)
-| +.|+++++|.+||. +|. +|...+ .|.|.|. ++++++|.+
T Consensus 408 pA-~VF~see~a~~ai~--~g~i~i~~Gd----VvVIRye---GPkGgPGMp 449 (577)
T PRK13016 408 PA-LVFDSYPEMKAAID--DENLDVTPDH----VMVLRNA---GPQGGPGMP 449 (577)
T ss_pred eE-EEECCHHHHHHHHh--CCCcCCCCCe----EEEEeCC---CCCCCCCCc
Confidence 45 67999999999983 443 343331 6666665 556666654
No 168
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=27.10 E-value=2.6e+02 Score=27.52 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=25.7
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecCCCCCCCCCC
Q 026826 179 LCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPGARSGGGH 228 (232)
Q Consensus 179 ~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~~~~r~ggg~ 228 (232)
=| +.|+++++|.+||.. |..-.+. .|.|.|. ++++++|.
T Consensus 400 pA-~VF~see~a~~ai~~--g~I~~gd-----VvViRye---GPkGgPGM 438 (552)
T PRK00911 400 PA-RVFDSEEEAMEAILA--GKIKAGD-----VVVIRYE---GPKGGPGM 438 (552)
T ss_pred eE-EEECCHHHHHHHHhc--CCCCCCe-----EEEEeCC---CCCCCCCh
Confidence 44 679999999999853 4444444 6777766 45555553
No 169
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.60 E-value=1.6e+02 Score=21.05 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=37.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 026826 135 LFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (232)
Q Consensus 135 LfV~nLp~~~te~~L~~lF~~f--G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~ 195 (232)
-|+-.++.+.+..++++.++.+ -.+.+|+...-+.. -+ =|||.+..-..|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~-~K-----KA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG-EK-----KAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-ce-----EEEEEECCCCcHHHHHH
Confidence 4555678899999999887764 35666665554321 11 59999988777765543
No 170
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=26.28 E-value=2.3e+02 Score=28.30 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=24.9
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecCCCCCCCCCC
Q 026826 182 VDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPGARSGGGH 228 (232)
Q Consensus 182 VeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~~~~r~ggg~ 228 (232)
+.|+++++|.+||.. |..-.|. .|.|.|. ++++++|.
T Consensus 452 ~VFdsee~a~~ai~~--g~I~~gd-----VvVIRye---GPkGgPGM 488 (615)
T PRK12448 452 RVFESQDDAVEAILG--GKVKAGD-----VVVIRYE---GPKGGPGM 488 (615)
T ss_pred EEECCHHHHHHHHhc--CCCCCCe-----EEEEeCC---CCCCCcCH
Confidence 679999999999853 4443444 6777776 44555553
No 171
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.57 E-value=1.3e+02 Score=20.80 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=16.0
Q ss_pred HHHHHHhcCCCCeEEEEEec
Q 026826 147 REVAHIFRPFVGYKEVRLVS 166 (232)
Q Consensus 147 ~~L~~lF~~fG~i~~vrl~~ 166 (232)
.+|++.|+..|+|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57899999999998665544
No 172
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=13 Score=35.26 Aligned_cols=79 Identities=8% Similarity=-0.121 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+...|+..|+...++.++.-+|..||-|..+.+..... +|.-+..+||.-.. ..|..+|..+.-..+.+. .
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~---~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~-----~ 73 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVN---GSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES-----Q 73 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCcccc---CCcceeeeeeeeec-cCcccccCHHHHhhhhhh-----h
Confidence 44678889999999999999999999998887665543 34444577877654 456777776666666676 7
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
++|..+..
T Consensus 74 ~r~~~~~~ 81 (572)
T KOG4365|consen 74 DRKAVSPS 81 (572)
T ss_pred hhhhcCch
Confidence 77777653
No 173
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=24.14 E-value=3.6e+02 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=22.1
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeecC
Q 026826 182 VDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARY 219 (232)
Q Consensus 182 VeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak~ 219 (232)
+.|+++++|.+|| ++|..-.+. .+.|.|.-+
T Consensus 419 ~VFds~e~~~~ai--~~g~l~~g~-----VvVIRyeGP 449 (575)
T COG0129 419 RVFDSQEDAIKAI--LDGELKAGD-----VVVIRYEGP 449 (575)
T ss_pred EEECCHHHHHHHH--hcCCCCCCe-----EEEEeccCC
Confidence 7799999999998 455544444 677777644
No 174
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=23.62 E-value=49 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHh
Q 026826 132 SSTLFVEGLPSDCSRREVAHIF 153 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF 153 (232)
.++|-|.|||....+++|++..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 5789999999999999999654
No 175
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=20.74 E-value=3.1e+02 Score=20.83 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=32.9
Q ss_pred HHHHhcCCCCeEEEEEecCC------------CCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026826 149 VAHIFRPFVGYKEVRLVSKE------------SRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (232)
Q Consensus 149 L~~lF~~fG~i~~vrl~~~~------------~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L 197 (232)
..++|..||-+.-+...-+. -+..-|....|.+|+|.+.+...++...+
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 44789999987765433321 11223566789999999999998887654
No 176
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.73 E-value=1.8e+02 Score=21.45 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=37.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhc-------CC-CCeEEEEEecCC------CCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026826 134 TLFVEGLPSDCSRREVAHIFR-------PF-VGYKEVRLVSKE------SRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~-------~f-G~i~~vrl~~~~------~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG 199 (232)
++|| |.++++++++..+.+ .. |.|.++.-.-.+ .++..| -|.++.|.-..++.+.++..
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G---~Yv~~~f~~~~~~i~eler~-- 82 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDG---IYIQMNYSGNGKLVNSLEKA-- 82 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEE---EEEEEEEEECHHHHHHHHHH--
Confidence 5666 346777877665544 44 455555422111 333334 27889999877777776542
Q ss_pred ceeCCC
Q 026826 200 YRFDEH 205 (232)
Q Consensus 200 ~~l~g~ 205 (232)
..++..
T Consensus 83 lri~e~ 88 (97)
T CHL00123 83 LKLDEN 88 (97)
T ss_pred hCCCCC
Confidence 345554
No 177
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=20.05 E-value=1.3e+02 Score=22.27 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=18.7
Q ss_pred eEEEEEeCCHHHHHHHHHHhCC
Q 026826 178 ILCFVDFVSPAHAATAMDALQG 199 (232)
Q Consensus 178 g~aFVeF~~~~~A~~Ai~~LnG 199 (232)
++|-|+|.+.+.+..|.+.|-.
T Consensus 52 pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 52 PMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred EeEEEECCChHHHHHHHHHHHH
Confidence 5999999999999998877643
Done!