Query 026826
Match_columns 232
No_of_seqs 329 out of 1396
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 23:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 99.9 2.2E-21 7.7E-26 142.3 13.2 91 131-229 4-94 (95)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-21 3.8E-26 146.6 11.0 80 132-219 19-98 (99)
3 1x5u_A Splicing factor 3B subu 99.9 8E-21 2.7E-25 142.0 12.8 92 130-229 13-104 (105)
4 2d9p_A Polyadenylate-binding p 99.9 1.4E-20 5E-25 140.3 13.8 88 130-227 13-100 (103)
5 1x4a_A Splicing factor, argini 99.8 1.9E-20 6.5E-25 141.1 14.2 83 131-224 21-103 (109)
6 2dgs_A DAZ-associated protein 99.8 1.9E-20 6.6E-25 138.6 13.5 90 131-229 9-98 (99)
7 2dng_A Eukaryotic translation 99.8 1.7E-20 5.9E-25 140.0 13.3 95 126-230 9-103 (103)
8 2dnm_A SRP46 splicing factor; 99.8 1.4E-20 4.9E-25 140.3 12.0 87 130-224 11-97 (103)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-20 4.7E-25 140.0 11.7 90 131-228 11-100 (102)
10 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-20 5.3E-25 139.7 11.9 86 131-224 11-96 (102)
11 2cq0_A Eukaryotic translation 99.8 2.7E-20 9.3E-25 138.8 13.2 86 131-224 14-99 (103)
12 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-20 4.5E-25 141.0 11.4 90 129-226 10-102 (106)
13 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.1E-20 1.4E-24 137.8 13.8 86 131-226 14-99 (103)
14 2do4_A Squamous cell carcinoma 99.8 4.1E-20 1.4E-24 137.1 13.5 83 131-222 16-98 (100)
15 1x5t_A Splicing factor 3B subu 99.8 1.2E-20 4.1E-25 138.7 10.4 87 131-225 4-91 (96)
16 3s8s_A Histone-lysine N-methyl 99.8 2.4E-20 8.3E-25 142.0 11.9 81 132-220 6-86 (110)
17 2cpe_A RNA-binding protein EWS 99.8 3.7E-20 1.2E-24 140.3 12.7 88 131-226 14-109 (113)
18 1x4h_A RNA-binding protein 28; 99.8 5.9E-20 2E-24 138.4 13.7 88 130-225 13-106 (111)
19 2dnh_A Bruno-like 5, RNA bindi 99.8 6.7E-20 2.3E-24 136.9 13.8 84 131-223 14-100 (105)
20 2cph_A RNA binding motif prote 99.8 5E-20 1.7E-24 137.9 13.1 86 131-224 14-101 (107)
21 2cq3_A RNA-binding protein 9; 99.8 1E-19 3.6E-24 135.6 14.8 84 131-224 14-97 (103)
22 2cpz_A CUG triplet repeat RNA- 99.8 3.6E-20 1.2E-24 140.9 12.3 86 131-224 24-109 (115)
23 2e5h_A Zinc finger CCHC-type a 99.8 4.3E-20 1.5E-24 135.2 12.1 80 131-218 15-94 (94)
24 3ex7_B RNA-binding protein 8A; 99.8 2E-20 6.8E-25 144.4 10.6 83 131-221 21-103 (126)
25 2cpi_A CCR4-NOT transcription 99.8 4E-20 1.4E-24 140.3 12.0 85 132-221 15-102 (111)
26 2cpf_A RNA binding motif prote 99.8 3.1E-20 1E-24 137.1 11.1 88 131-223 4-91 (98)
27 1u6f_A Tcubp1, RNA-binding pro 99.8 4.3E-20 1.5E-24 144.8 12.4 87 130-224 40-126 (139)
28 2dgv_A HnRNP M, heterogeneous 99.8 4E-20 1.4E-24 134.8 11.2 84 130-223 6-89 (92)
29 2la6_A RNA-binding protein FUS 99.8 5.5E-20 1.9E-24 136.3 12.1 86 125-218 6-99 (99)
30 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.5E-20 1.2E-24 133.6 10.7 82 131-220 5-86 (87)
31 1wi8_A EIF-4B, eukaryotic tran 99.8 6.4E-20 2.2E-24 137.1 12.6 92 126-226 9-100 (104)
32 2div_A TRNA selenocysteine ass 99.8 3E-20 1E-24 137.4 10.6 85 130-222 7-96 (99)
33 2do0_A HnRNP M, heterogeneous 99.8 1.5E-19 5E-24 137.0 14.6 82 131-221 14-95 (114)
34 2cqc_A Arginine/serine-rich sp 99.8 5.6E-20 1.9E-24 134.6 11.8 82 130-219 13-94 (95)
35 2fc8_A NCL protein; structure 99.8 8.5E-20 2.9E-24 135.7 12.6 90 129-229 12-101 (102)
36 2lxi_A RNA-binding protein 10; 99.8 6.1E-21 2.1E-25 140.3 6.0 83 132-222 1-85 (91)
37 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-19 4.9E-24 137.4 13.6 84 131-222 14-97 (115)
38 2dgt_A RNA-binding protein 30; 99.8 1.1E-19 3.9E-24 132.8 12.4 83 130-228 8-90 (92)
39 2khc_A Testis-specific RNP-typ 99.8 1.2E-19 4.2E-24 138.4 13.1 80 131-218 39-118 (118)
40 2lkz_A RNA-binding protein 5; 99.8 2.5E-20 8.4E-25 138.7 8.9 80 132-219 9-94 (95)
41 2fy1_A RNA-binding motif prote 99.8 9.9E-20 3.4E-24 139.5 12.4 83 130-221 5-87 (116)
42 1x4c_A Splicing factor, argini 99.8 1.8E-19 6E-24 136.0 13.5 82 130-221 13-94 (108)
43 1whw_A Hypothetical protein ri 99.8 1.7E-19 5.9E-24 133.3 13.2 86 131-224 7-92 (99)
44 2ywk_A Putative RNA-binding pr 99.8 5.2E-20 1.8E-24 135.0 10.2 81 130-219 14-94 (95)
45 2dnq_A RNA-binding protein 4B; 99.8 1.5E-19 5.1E-24 131.7 12.1 81 131-227 7-87 (90)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.3E-20 2.2E-24 131.7 10.0 80 131-218 6-85 (85)
47 3md1_A Nuclear and cytoplasmic 99.8 1.5E-19 5E-24 129.2 11.8 81 132-220 1-81 (83)
48 4f25_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 141.3 9.3 82 132-223 5-86 (115)
49 1p27_B RNA-binding protein 8A; 99.8 9E-20 3.1E-24 136.4 10.9 84 131-222 22-105 (106)
50 2dh8_A DAZ-associated protein 99.8 1.1E-19 3.6E-24 136.0 11.0 86 131-225 15-100 (105)
51 2x1f_A MRNA 3'-END-processing 99.8 1.1E-19 3.7E-24 133.9 10.9 82 132-221 2-83 (96)
52 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.5E-19 5.2E-24 144.6 12.6 85 129-221 36-120 (156)
53 4a8x_A RNA-binding protein wit 99.8 8.6E-20 2.9E-24 131.7 9.5 85 132-223 4-88 (88)
54 3ulh_A THO complex subunit 4; 99.8 1.8E-19 6.3E-24 135.0 11.5 81 130-219 27-107 (107)
55 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-19 6E-24 135.3 11.4 84 131-225 14-97 (102)
56 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-19 4.1E-24 136.8 10.4 84 131-222 25-108 (110)
57 2kxn_B Transformer-2 protein h 99.8 1.1E-19 3.9E-24 142.0 10.6 85 130-222 44-128 (129)
58 2dgx_A KIAA0430 protein; RRM d 99.8 2.3E-19 7.7E-24 132.6 11.4 83 131-224 8-94 (96)
59 2cpj_A Non-POU domain-containi 99.8 4E-19 1.4E-23 131.6 12.7 83 131-227 14-96 (99)
60 2dhg_A TRNA selenocysteine ass 99.8 1.6E-19 5.6E-24 134.6 10.3 85 130-223 7-93 (104)
61 2jrs_A RNA-binding protein 39; 99.8 2.6E-19 8.9E-24 135.5 11.5 83 130-220 24-106 (108)
62 1x4d_A Matrin 3; structural ge 99.8 1.8E-19 6.3E-24 135.9 10.5 77 130-220 13-92 (102)
63 3r27_A HnRNP L, heterogeneous 99.8 1.8E-19 6.1E-24 135.5 10.3 76 131-220 20-97 (100)
64 2cq1_A PTB-like protein L; RRM 99.8 9.6E-19 3.3E-23 131.5 14.1 79 131-223 14-94 (101)
65 1why_A Hypothetical protein ri 99.8 4.9E-19 1.7E-23 130.6 12.3 78 131-222 16-95 (97)
66 2fc9_A NCL protein; structure 99.8 6.4E-19 2.2E-23 130.8 12.7 82 131-224 14-95 (101)
67 2cqg_A TDP-43, TAR DNA-binding 99.8 1E-18 3.4E-23 130.2 13.6 84 131-224 14-97 (103)
68 2cqp_A RNA-binding protein 12; 99.8 1.9E-19 6.4E-24 132.9 9.3 82 131-220 14-95 (98)
69 1x4b_A Heterogeneous nuclear r 99.8 3.7E-19 1.3E-23 135.5 10.7 87 132-227 27-113 (116)
70 1sjq_A Polypyrimidine tract-bi 99.8 1.8E-19 6.1E-24 136.7 8.9 78 131-222 15-94 (105)
71 2cpd_A Apobec-1 stimulating pr 99.8 1.5E-18 5.2E-23 128.4 13.8 77 131-223 14-92 (99)
72 2dnp_A RNA-binding protein 14; 99.8 4.2E-19 1.4E-23 129.3 10.5 80 131-226 8-87 (90)
73 3p5t_L Cleavage and polyadenyl 99.8 7.3E-20 2.5E-24 133.6 6.4 81 133-221 2-84 (90)
74 1x4e_A RNA binding motif, sing 99.8 7E-20 2.4E-24 131.8 6.0 81 130-218 3-83 (85)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.6E-19 1.6E-23 143.4 11.2 86 131-224 71-156 (165)
76 2cqd_A RNA-binding region cont 99.8 1.1E-18 3.8E-23 132.8 12.6 81 131-220 16-96 (116)
77 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.7E-23 131.9 12.1 78 131-222 14-93 (104)
78 1wf1_A RNA-binding protein RAL 99.8 7.8E-19 2.7E-23 132.6 11.3 84 131-230 26-110 (110)
79 2dgw_A Probable RNA-binding pr 99.8 1.3E-18 4.3E-23 126.8 11.9 79 131-220 9-87 (91)
80 3ns6_A Eukaryotic translation 99.8 1.4E-19 4.9E-24 134.9 6.8 80 132-219 6-92 (100)
81 3lqv_A PRE-mRNA branch site pr 99.8 6.7E-19 2.3E-23 133.7 10.6 83 127-220 3-85 (115)
82 2cpx_A Hypothetical protein FL 99.8 5.4E-19 1.9E-23 134.0 10.0 84 130-225 23-110 (115)
83 2dgu_A Heterogeneous nuclear r 99.8 1.3E-18 4.4E-23 129.9 11.5 75 131-221 10-84 (103)
84 2cqh_A IGF-II mRNA-binding pro 99.8 6.2E-19 2.1E-23 129.0 9.5 83 131-228 7-91 (93)
85 2kt5_A RNA and export factor-b 99.8 7.7E-18 2.6E-22 129.7 15.5 84 129-221 32-115 (124)
86 2ad9_A Polypyrimidine tract-bi 99.8 1.2E-18 4.1E-23 134.9 10.8 79 131-223 30-110 (119)
87 2jwn_A Embryonic polyadenylate 99.8 1E-18 3.4E-23 134.4 10.3 81 132-221 36-116 (124)
88 1p1t_A Cleavage stimulation fa 99.8 2.6E-19 8.8E-24 133.4 6.8 83 131-221 7-89 (104)
89 2ek1_A RNA-binding protein 12; 99.8 3.7E-19 1.3E-23 130.4 7.6 80 132-219 15-94 (95)
90 2m2b_A RNA-binding protein 10; 99.8 4.7E-19 1.6E-23 138.1 8.6 83 131-222 22-110 (131)
91 2err_A Ataxin-2-binding protei 99.8 1.1E-18 3.9E-23 131.9 10.4 80 131-220 28-107 (109)
92 3ucg_A Polyadenylate-binding p 99.8 1.2E-18 4.1E-23 126.0 10.1 80 132-220 6-85 (89)
93 2cq4_A RNA binding motif prote 99.8 2.4E-19 8.3E-24 136.1 6.6 81 132-221 25-105 (114)
94 1x5o_A RNA binding motif, sing 99.8 3.3E-18 1.1E-22 129.6 12.9 86 131-220 24-112 (114)
95 3s7r_A Heterogeneous nuclear r 99.8 1.9E-18 6.4E-23 124.8 10.9 79 130-217 9-87 (87)
96 1x4g_A Nucleolysin TIAR; struc 99.8 1.8E-18 6.3E-23 130.3 11.3 78 131-222 24-101 (109)
97 2a3j_A U1 small nuclear ribonu 99.8 8.8E-19 3E-23 137.0 9.8 80 131-221 28-111 (127)
98 2ytc_A PRE-mRNA-splicing facto 99.8 1.5E-18 5.3E-23 124.5 10.0 74 131-218 11-85 (85)
99 2kn4_A Immunoglobulin G-bindin 99.8 2E-18 6.9E-23 137.8 11.2 85 131-223 69-153 (158)
100 2hvz_A Splicing factor, argini 99.8 1E-18 3.4E-23 129.8 8.8 78 133-223 1-78 (101)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.3E-18 7.9E-23 134.4 11.0 79 131-217 62-140 (140)
102 1x5p_A Negative elongation fac 99.8 9.8E-18 3.3E-22 123.8 13.8 79 131-225 14-92 (97)
103 1nu4_A U1A RNA binding domain; 99.8 7.7E-19 2.6E-23 129.2 7.8 80 131-221 7-90 (97)
104 3n9u_C Cleavage and polyadenyl 99.8 1.7E-18 5.7E-23 139.7 10.2 80 132-219 55-136 (156)
105 2kvi_A Nuclear polyadenylated 99.8 1.8E-18 6.2E-23 127.6 9.6 75 131-221 9-84 (96)
106 1wg5_A Heterogeneous nuclear r 99.8 4.9E-18 1.7E-22 127.3 12.1 84 131-224 14-98 (104)
107 2lcw_A RNA-binding protein FUS 99.6 3.5E-20 1.2E-24 141.3 0.0 86 131-224 6-99 (116)
108 2rs2_A Musashi-1, RNA-binding 99.8 2.5E-18 8.5E-23 130.2 10.2 84 131-223 24-107 (109)
109 2lea_A Serine/arginine-rich sp 99.8 5.2E-19 1.8E-23 139.1 6.6 85 131-223 46-130 (135)
110 2db1_A Heterogeneous nuclear r 99.8 2.2E-18 7.5E-23 132.4 9.9 79 131-219 16-97 (118)
111 1fjc_A Nucleolin RBD2, protein 99.8 1.3E-18 4.5E-23 127.8 7.9 80 131-223 15-94 (96)
112 2la4_A Nuclear and cytoplasmic 99.8 1.8E-18 6.1E-23 128.4 8.6 75 132-220 27-101 (101)
113 2e5j_A Methenyltetrahydrofolat 99.8 4.2E-18 1.4E-22 125.7 10.5 78 131-221 18-95 (97)
114 2xnq_A Nuclear polyadenylated 99.8 4.8E-18 1.7E-22 126.0 10.8 75 130-220 20-95 (97)
115 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.3E-18 4.4E-23 129.5 7.3 83 129-220 16-98 (100)
116 2dis_A Unnamed protein product 99.8 2.4E-18 8.1E-23 129.3 8.6 83 131-221 7-93 (109)
117 1x4f_A Matrin 3; structural ge 99.8 2.9E-18 1E-22 131.4 9.1 76 131-220 24-102 (112)
118 2jvo_A Nucleolar protein 3; nu 99.7 6.1E-18 2.1E-22 128.0 10.6 77 131-223 30-106 (108)
119 2mss_A Protein (musashi1); RNA 99.7 1.5E-18 5.1E-23 121.9 6.6 75 134-217 1-75 (75)
120 1s79_A Lupus LA protein; RRM, 99.7 3.1E-18 1.1E-22 128.9 8.7 78 132-219 11-88 (103)
121 2jvr_A Nucleolar protein 3; RN 99.7 3.1E-18 1.1E-22 130.9 8.1 78 131-220 27-105 (111)
122 1whx_A Hypothetical protein ri 99.7 4.4E-18 1.5E-22 129.3 8.8 75 132-220 10-84 (111)
123 3egn_A RNA-binding protein 40; 99.7 3.8E-18 1.3E-22 134.5 8.7 84 130-224 43-134 (143)
124 1wel_A RNA-binding protein 12; 99.7 3E-18 1E-22 132.3 7.6 82 129-219 22-103 (124)
125 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-18 7.3E-23 121.4 6.2 76 133-217 1-76 (77)
126 2cpy_A RNA-binding protein 12; 99.7 7.2E-18 2.4E-22 128.4 9.5 80 131-220 14-94 (114)
127 2ki2_A SS-DNA binding protein 99.7 8.3E-19 2.8E-23 127.4 4.0 79 133-220 2-80 (90)
128 3beg_B Splicing factor, argini 99.7 6.3E-18 2.2E-22 129.1 9.1 80 131-220 15-94 (115)
129 2wbr_A GW182, gawky, LD47780P; 99.7 6.7E-18 2.3E-22 123.9 8.7 73 132-218 7-79 (89)
130 4f02_A Polyadenylate-binding p 99.7 1.1E-17 3.6E-22 140.1 11.2 86 127-220 10-95 (213)
131 2e5i_A Heterogeneous nuclear r 99.7 2.4E-17 8.1E-22 128.5 11.9 74 133-220 26-102 (124)
132 2hgl_A HNRPF protein, heteroge 99.7 6.4E-18 2.2E-22 133.6 8.7 79 131-219 43-124 (136)
133 3pgw_S U1-70K; protein-RNA com 99.7 1.6E-17 5.4E-22 154.2 12.5 83 130-220 100-182 (437)
134 2nlw_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 125.5 9.3 81 131-220 14-100 (105)
135 3q2s_C Cleavage and polyadenyl 99.7 5.4E-18 1.8E-22 144.7 8.5 79 132-218 68-148 (229)
136 1fj7_A Nucleolin RBD1, protein 99.7 1.6E-18 5.4E-23 128.7 4.0 84 131-224 16-99 (101)
137 2e44_A Insulin-like growth fac 99.7 2.3E-17 7.7E-22 121.2 9.5 78 131-220 14-92 (96)
138 2i2y_A Fusion protein consists 99.7 2.7E-17 9.4E-22 130.5 10.3 77 131-220 72-148 (150)
139 1sjr_A Polypyrimidine tract-bi 99.7 1.9E-17 6.7E-22 134.7 9.4 78 131-220 45-124 (164)
140 2f3j_A RNA and export factor b 99.7 2.5E-17 8.6E-22 135.3 10.0 84 128-220 84-167 (177)
141 3zzy_A Polypyrimidine tract-bi 99.7 3.3E-17 1.1E-21 128.6 10.1 76 132-220 28-106 (130)
142 2cq2_A Hypothetical protein LO 99.7 2.1E-17 7.3E-22 127.0 8.8 76 131-220 24-106 (114)
143 2hgn_A Heterogeneous nuclear r 99.7 4.3E-18 1.5E-22 135.1 4.9 81 131-222 45-125 (139)
144 3md3_A Nuclear and cytoplasmic 99.7 9.2E-17 3.2E-21 127.0 12.5 81 131-219 86-166 (166)
145 2dnn_A RNA-binding protein 12; 99.7 5.2E-17 1.8E-21 123.6 10.1 77 132-219 16-92 (109)
146 2e5g_A U6 snRNA-specific termi 99.7 9.4E-17 3.2E-21 117.8 10.8 76 132-221 8-83 (94)
147 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-17 5.4E-22 125.1 6.7 80 130-219 9-91 (107)
148 1fxl_A Paraneoplastic encephal 99.7 9.1E-17 3.1E-21 127.2 11.5 81 132-220 2-82 (167)
149 2xs2_A Deleted in azoospermia- 99.7 1.3E-17 4.3E-22 124.0 6.0 79 131-220 8-86 (102)
150 1wg1_A KIAA1579 protein, homol 99.7 1E-16 3.5E-21 116.3 10.5 74 132-220 5-78 (88)
151 1iqt_A AUF1, heterogeneous nuc 99.7 8.2E-18 2.8E-22 117.9 4.4 75 134-217 1-75 (75)
152 2yh0_A Splicing factor U2AF 65 99.7 1E-16 3.6E-21 130.8 11.5 86 130-223 112-197 (198)
153 1b7f_A Protein (SXL-lethal pro 99.7 7.6E-17 2.6E-21 128.1 10.1 82 132-221 3-84 (168)
154 2qfj_A FBP-interacting repress 99.7 1.5E-16 5.1E-21 131.6 12.0 82 132-221 125-206 (216)
155 2krb_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 117.8 6.0 69 132-205 1-75 (81)
156 1l3k_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 129.7 10.6 84 131-223 103-186 (196)
157 1wf0_A TDP-43, TAR DNA-binding 99.7 6.9E-17 2.4E-21 117.0 7.5 77 131-224 4-82 (88)
158 2g4b_A Splicing factor U2AF 65 99.7 2.1E-16 7.1E-21 126.3 10.9 78 132-217 94-171 (172)
159 3md3_A Nuclear and cytoplasmic 99.7 1.8E-16 6.3E-21 125.3 10.3 80 133-221 1-80 (166)
160 3tyt_A Heterogeneous nuclear r 99.7 1.8E-16 6.3E-21 132.8 10.8 76 132-220 4-80 (205)
161 2dha_A FLJ20171 protein; RRM d 99.7 3.8E-17 1.3E-21 127.0 5.8 79 131-219 22-104 (123)
162 2diu_A KIAA0430 protein; struc 99.7 2E-16 6.7E-21 117.4 9.2 71 132-220 8-84 (96)
163 2bz2_A Negative elongation fac 99.7 2.4E-16 8.2E-21 121.7 10.2 77 130-222 37-113 (121)
164 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-16 5.1E-21 121.0 8.5 65 132-197 8-72 (114)
165 1l3k_A Heterogeneous nuclear r 99.7 2.5E-16 8.5E-21 128.4 10.0 83 129-220 10-92 (196)
166 3d2w_A TAR DNA-binding protein 99.7 3.6E-16 1.2E-20 114.2 9.7 74 131-221 10-85 (89)
167 3nmr_A Cugbp ELAV-like family 99.7 3.2E-16 1.1E-20 125.1 10.2 82 131-218 94-175 (175)
168 4f02_A Polyadenylate-binding p 99.7 1.7E-16 5.8E-21 132.8 8.9 79 132-220 103-181 (213)
169 1b7f_A Protein (SXL-lethal pro 99.7 8.1E-16 2.8E-20 122.1 12.0 78 132-217 89-168 (168)
170 2hzc_A Splicing factor U2AF 65 99.7 1.9E-16 6.6E-21 113.8 7.4 71 131-216 5-86 (87)
171 2hgm_A HNRPF protein, heteroge 99.7 2.1E-16 7.2E-21 123.4 8.0 78 131-219 41-120 (126)
172 2cjk_A Nuclear polyadenylated 99.6 2.5E-16 8.4E-21 125.2 7.7 80 132-220 87-166 (167)
173 3pgw_A U1-A; protein-RNA compl 99.6 9.3E-16 3.2E-20 132.6 12.0 80 131-221 8-91 (282)
174 2adc_A Polypyrimidine tract-bi 99.6 4.9E-16 1.7E-20 131.3 9.5 79 129-220 31-110 (229)
175 1fxl_A Paraneoplastic encephal 99.6 9.8E-16 3.3E-20 121.2 10.5 80 132-217 88-167 (167)
176 2qfj_A FBP-interacting repress 99.6 8E-16 2.7E-20 127.1 10.1 81 132-220 28-108 (216)
177 2pe8_A Splicing factor 45; RRM 99.6 2.1E-15 7.3E-20 113.9 10.4 82 131-219 7-93 (105)
178 3nmr_A Cugbp ELAV-like family 99.6 1.8E-15 6E-20 120.8 10.3 86 132-220 3-88 (175)
179 3u1l_A PRE-mRNA-splicing facto 99.6 1.1E-15 3.6E-20 131.6 8.8 76 131-220 133-229 (240)
180 3pgw_A U1-A; protein-RNA compl 99.6 2.8E-15 9.6E-20 129.5 11.5 76 131-219 206-282 (282)
181 1fje_B Nucleolin RBD12, protei 99.6 3.8E-15 1.3E-19 119.5 10.3 77 131-220 98-174 (175)
182 2voo_A Lupus LA protein; RNA-b 99.6 3.1E-15 1.1E-19 124.3 9.9 79 132-220 109-187 (193)
183 3smz_A Protein raver-1, ribonu 99.6 4E-15 1.4E-19 128.7 10.9 83 131-222 183-266 (284)
184 2j8a_A Histone-lysine N-methyl 99.6 1.8E-15 6.3E-20 118.4 7.6 79 133-219 3-95 (136)
185 2cjk_A Nuclear polyadenylated 99.6 3E-15 1E-19 118.9 8.3 78 132-219 3-80 (167)
186 2dit_A HIV TAT specific factor 99.6 2.9E-14 9.7E-19 108.1 12.6 78 131-220 14-102 (112)
187 3tyt_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 124.6 8.1 81 131-217 122-204 (205)
188 1qm9_A Polypyrimidine tract-bi 99.6 4.3E-15 1.5E-19 121.8 8.0 76 132-220 3-79 (198)
189 1qm9_A Polypyrimidine tract-bi 99.6 6E-15 2E-19 121.0 8.8 77 131-220 119-197 (198)
190 2adc_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 123.1 10.4 77 131-220 150-228 (229)
191 3sde_A Paraspeckle component 1 99.6 1.9E-14 6.4E-19 124.0 11.0 75 131-219 21-95 (261)
192 2ghp_A U4/U6 snRNA-associated 99.5 9.8E-15 3.4E-19 126.7 8.7 82 131-220 209-291 (292)
193 3smz_A Protein raver-1, ribonu 99.5 2.8E-14 9.4E-19 123.4 11.1 82 132-221 95-176 (284)
194 1fje_B Nucleolin RBD12, protei 99.5 4.5E-15 1.5E-19 119.1 4.3 83 129-221 10-92 (175)
195 2g4b_A Splicing factor U2AF 65 99.5 5.8E-14 2E-18 111.9 8.7 74 132-220 4-88 (172)
196 3sde_A Paraspeckle component 1 99.5 1.2E-13 4E-18 119.0 10.7 80 132-220 96-179 (261)
197 3tht_A Alkylated DNA repair pr 99.5 9.6E-14 3.3E-18 125.2 10.2 81 129-218 15-97 (345)
198 1jmt_A Splicing factor U2AF 35 99.5 1.4E-14 4.7E-19 109.1 3.9 73 136-217 19-103 (104)
199 2ghp_A U4/U6 snRNA-associated 99.5 7.8E-14 2.7E-18 121.0 9.0 81 132-221 117-198 (292)
200 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.4E-18 113.0 9.1 74 132-220 4-88 (198)
201 3ue2_A Poly(U)-binding-splicin 99.5 3E-13 1E-17 104.2 9.9 83 131-218 19-107 (118)
202 3v4m_A Splicing factor U2AF 65 99.5 2.8E-13 9.5E-18 102.1 9.1 81 132-218 5-95 (105)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.4E-12 4.7E-17 97.7 11.2 76 132-222 10-92 (100)
204 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.7E-16 94.9 10.5 78 129-218 4-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 4.9E-11 1.7E-15 92.2 10.2 73 131-217 17-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 5.2E-11 1.8E-15 87.4 8.0 72 132-220 7-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 6.3E-10 2.1E-14 82.1 5.3 70 132-218 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 3.4E-09 1.2E-13 88.6 8.5 70 144-218 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 8.4E-07 2.9E-11 67.0 8.5 70 132-215 21-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.1 2E-05 6.8E-10 58.2 9.2 56 131-198 15-70 (100)
211 1wey_A Calcipressin 1; structu 98.0 9.9E-06 3.4E-10 60.6 6.5 75 132-220 5-84 (104)
212 1uw4_A UPF3X; nonsense mediate 98.0 9E-05 3.1E-09 54.1 10.4 87 133-220 2-88 (91)
213 2l08_A Regulator of nonsense t 97.5 0.00039 1.3E-08 51.3 7.2 87 132-219 9-95 (97)
214 3ctr_A Poly(A)-specific ribonu 97.4 0.00026 8.9E-09 52.4 5.4 54 133-198 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.1 0.0018 6.1E-08 49.4 7.7 63 132-205 24-86 (119)
216 2dhx_A Poly (ADP-ribose) polym 97.0 0.0048 1.6E-07 45.9 9.1 67 132-215 8-79 (104)
217 3pq1_A Poly(A) RNA polymerase; 95.4 0.0075 2.6E-07 56.0 3.2 55 132-195 53-107 (464)
218 2i2y_A Fusion protein consists 94.8 0.012 4E-07 45.5 2.3 39 175-219 11-50 (150)
219 2kn4_A Immunoglobulin G-bindin 94.7 0.022 7.7E-07 44.0 3.6 35 161-200 2-36 (158)
220 3d45_A Poly(A)-specific ribonu 94.2 0.14 4.7E-06 48.0 8.4 55 132-198 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 92.4 0.17 5.7E-06 39.1 4.8 76 132-217 7-96 (132)
222 2g0c_A ATP-dependent RNA helic 79.6 4.3 0.00015 27.3 5.6 68 134-218 2-75 (76)
223 4f25_A Polyadenylate-binding p 65.4 1.3 4.4E-05 32.2 0.0 17 132-148 97-113 (115)
224 4e8u_A Putative uncharacterize 43.3 30 0.001 27.6 4.6 55 134-194 14-80 (172)
225 4eyt_A Telomerase associated p 36.9 1.1E+02 0.0039 21.8 7.9 56 131-197 11-66 (129)
226 3pgw_S U1-70K; protein-RNA com 33.4 6 0.0002 35.9 -1.2 15 149-163 9-23 (437)
227 2e7g_A Putative ribosome-bindi 30.3 1.3E+02 0.0046 22.2 6.3 36 156-198 43-79 (129)
228 3fry_A Probable copper-exporti 28.0 96 0.0033 19.5 4.6 59 133-202 7-65 (73)
229 2e5p_A Protein PHF1, PHD finge 23.0 33 0.0011 23.0 1.3 8 179-186 39-46 (68)
230 4a4j_A Pacszia, cation-transpo 22.3 1.4E+02 0.0048 18.1 4.8 54 133-195 4-60 (69)
231 2okq_A Hypothetical protein YB 20.5 2.2E+02 0.0075 21.8 5.7 47 150-196 51-109 (141)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=142.32 Aligned_cols=91 Identities=21% Similarity=0.334 Sum_probs=79.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD---TGRSKGYGFITFSDSECARRALEQLNGFELAGR----- 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS---SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC---CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc-----
Confidence 478999999999999999999999999999999998753 244556999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCCCCC
Q 026826 211 KLRLQFARYPGARSGGGHR 229 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ggg~r 229 (232)
.|+|+|++.+..++++++.
T Consensus 76 ~l~V~~a~~~~~~~~~~~~ 94 (95)
T 2dnz_A 76 PMRVGHVTERLDGGSGPSS 94 (95)
T ss_dssp CCEEEESSCCCCCCCCCCC
T ss_pred EEEEEEcccccCCCCCCCC
Confidence 9999999987655544433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=146.63 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++|+++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.|+ +
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr-----~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV---AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK-----T 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC---CCcccccEEEEECCHHHHHHHHHHhCCCEECCE-----E
Confidence 67999999999999999999999999999999998753 366778999999999999999999999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|+||++
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999975
No 3
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8e-21 Score=141.97 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 85 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV---TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK---- 85 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 3478999999999999999999999999999999988752 245566999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCCCCCCC
Q 026826 210 VKLRLQFARYPGARSGGGHR 229 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~ggg~r 229 (232)
.|+|+|++.+..+...+.+
T Consensus 86 -~l~v~~a~~~~~~~~~~~~ 104 (105)
T 1x5u_A 86 -PIRVNKASAHNKNLSGPSS 104 (105)
T ss_dssp -BCEEEETTTTSCCCCCCCC
T ss_pred -EEEEEECCCCCcCCCCCCC
Confidence 9999999987655444443
No 4
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=140.25 Aligned_cols=88 Identities=22% Similarity=0.344 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ . |.++|||||+|.+.++|++|++.|||..|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 83 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK---- 83 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc----
Confidence 34789999999999999999999999999999999987 2 55667999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCCCCC
Q 026826 210 VKLRLQFARYPGARSGGG 227 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~ggg 227 (232)
.|+|+|++.+..+....
T Consensus 84 -~l~V~~a~~~~~~~~~~ 100 (103)
T 2d9p_A 84 -PLYVALAQRKEERQSGP 100 (103)
T ss_dssp -BCEEEECSSCCCCCCCC
T ss_pred -EEEEEEecccccCCCCC
Confidence 99999999876555433
No 5
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=141.11 Aligned_cols=83 Identities=23% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++|+++|+++|++||.|++|+|..+. .++|||||+|.+.++|++||+.||+..|+++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 89 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR------GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY----- 89 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS------SSSCCEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------CCCcEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 47899999999999999999999999999999996543 2335999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++....+.
T Consensus 90 ~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 90 RLRVEFPRSGRGTG 103 (109)
T ss_dssp ECEEECCCCCCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 99999998865443
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=138.62 Aligned_cols=90 Identities=21% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++ ||+..|.++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~----- 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE---KQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK----- 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT---TCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCCCCceEEEEECCHHHHHHHHH-hCCCEECCe-----
Confidence 478999999999999999999999999999999998752 24455699999999999999998 999999999
Q ss_pred eEEEEeecCCCCCCCCCCC
Q 026826 211 KLRLQFARYPGARSGGGHR 229 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ggg~r 229 (232)
.|+|+|++.+..+..+.++
T Consensus 80 ~l~V~~a~~~~~~~~~~~~ 98 (99)
T 2dgs_A 80 KVEVKRAEPRDSKSSGPSS 98 (99)
T ss_dssp BCEEEECCCCCCCCCCSSC
T ss_pred EEEEEECCCCcccCCCCCC
Confidence 9999999987655544433
No 7
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.7e-20 Score=139.98 Aligned_cols=95 Identities=23% Similarity=0.420 Sum_probs=81.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 126 PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 126 ~~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
+.++.+.++|||+|||.++++++|+++|++|| |++|+|+.++. .|+++|||||+|.+.++|++|| .|||..|.++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD---TDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC---CCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 34445588999999999999999999999996 99999998763 3567789999999999999999 8999999999
Q ss_pred CCCcceEEEEeecCCCCCCCCCCCC
Q 026826 206 DRDSVKLRLQFARYPGARSGGGHRG 230 (232)
Q Consensus 206 ~~~~~~L~V~~ak~~~~r~ggg~rG 230 (232)
.|+|+|++.+..+..+.++|
T Consensus 84 -----~l~V~~a~~~~~~~~~~~~G 103 (103)
T 2dng_A 84 -----SLRVDIAEGRKQDKSGPSSG 103 (103)
T ss_dssp -----ECEEEECCCCCCCCSSCCCC
T ss_pred -----EEEEEEecCCCCCCCCCCCC
Confidence 99999999876555544443
No 8
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=140.27 Aligned_cols=87 Identities=26% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 83 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH---TKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR---- 83 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS---SCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB----
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---CCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc----
Confidence 3478999999999999999999999999999999988753 244556999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCC
Q 026826 210 VKLRLQFARYPGARS 224 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~ 224 (232)
.|+|+|++....+.
T Consensus 84 -~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 84 -ELRVQVARYGRRDL 97 (103)
T ss_dssp -CCEEEECSSCCSCC
T ss_pred -EEEEEECCcCCCCC
Confidence 99999998765444
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=139.97 Aligned_cols=90 Identities=19% Similarity=0.325 Sum_probs=78.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---TEKHRGFAFVEFELAEDAAAAIDNMNESELFGR----- 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS---SCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 478999999999999999999999999999999988742 244556999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCCCC
Q 026826 211 KLRLQFARYPGARSGGGH 228 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ggg~ 228 (232)
.|+|+|++.+..+..+..
T Consensus 83 ~l~V~~a~~~~~~~~~~~ 100 (102)
T 2cqb_A 83 TIRVNLAKPMRIKESGPS 100 (102)
T ss_dssp EEEEEECCCCCCCCCCCC
T ss_pred EEEEEeCCCCCCCCCCCC
Confidence 999999998765554433
No 10
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=139.70 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .+.++|||||+|.+.++|++|++.|||..|.++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE---TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR----- 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS---SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCCcccEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 478999999999999999999999999999999988752 244556999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+..+.
T Consensus 83 ~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 83 QIRVDQAGKSSDNR 96 (102)
T ss_dssp CCEEEEEECCCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 99999998875443
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=138.77 Aligned_cols=86 Identities=22% Similarity=0.445 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++||+.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT---TGQSKGFAFISFHRREDAARAIAGVSGFGYDHL----- 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC---CCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc-----
Confidence 478999999999999999999999999999999998752 256678999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+..+.
T Consensus 86 ~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 86 ILNVEWAKPSTNSG 99 (103)
T ss_dssp ECEEEESSCCCCSC
T ss_pred EEEEEECCCCCCCC
Confidence 99999998875443
No 12
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.3e-20 Score=141.01 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRF---DEH 205 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l---~g~ 205 (232)
+.+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+ .++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF---TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS---SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34578999999999999999999999999999999988753 245556999999999999999999999998 778
Q ss_pred CCCcceEEEEeecCCCCCCCC
Q 026826 206 DRDSVKLRLQFARYPGARSGG 226 (232)
Q Consensus 206 ~~~~~~L~V~~ak~~~~r~gg 226 (232)
.|+|+|++.+..+..+
T Consensus 87 -----~l~v~~a~~~~~~~~~ 102 (106)
T 2dgp_A 87 -----PIQVKPADSESRGGSG 102 (106)
T ss_dssp -----CCEEEECCCCSCCCCC
T ss_pred -----eEEEEECCcccccCCC
Confidence 9999999987555443
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=137.78 Aligned_cols=86 Identities=22% Similarity=0.464 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|++|+|+.++... +|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-----DPYCFVEFYEHRDAAAALAAMNGRKILGK----- 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSS-----CCEEEEEESSHHHHHHHHHHHTTEEETTE-----
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCC-----CCEEEEEECCHHHHHHHHHHhCCCCcCCC-----
Confidence 47899999999999999999999999999999999886432 34999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCC
Q 026826 211 KLRLQFARYPGARSGG 226 (232)
Q Consensus 211 ~L~V~~ak~~~~r~gg 226 (232)
.|+|+|++.+..+...
T Consensus 84 ~l~V~~a~~~~~~~~~ 99 (103)
T 2cqi_A 84 EVKVNWATTPSSQKSG 99 (103)
T ss_dssp EEEEEECCCTTCCCCC
T ss_pred eEEEEECCCCcccccC
Confidence 9999999987555433
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.1e-20 Score=137.06 Aligned_cols=83 Identities=24% Similarity=0.522 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 86 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAVMKMDGMTIKEN----- 86 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTEESSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCEEeEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 378999999999999999999999999999999998763 56677999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
.|+|+|++++..
T Consensus 87 ~l~v~~a~~~~~ 98 (100)
T 2do4_A 87 IIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCCCC
Confidence 999999988643
No 15
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=138.69 Aligned_cols=87 Identities=16% Similarity=0.319 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE-EEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~v-rl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
++++|||+|||.++++++|+++|++||.|.+| +|+.++. .|.++|||||+|.+.++|++|++.|||..|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 76 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD---TGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---- 76 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT---TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC---CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE----
Confidence 37899999999999999999999999999999 9988742 244556999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCCC
Q 026826 210 VKLRLQFARYPGARSG 225 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~g 225 (232)
.|+|+|++.+..+..
T Consensus 77 -~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 77 -PITVSYAFKKDSKGS 91 (96)
T ss_dssp -ECEEEESCCCCCCCC
T ss_pred -EEEEEEecccCCCCC
Confidence 999999988755443
No 16
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=142.03 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||+++++++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|++||+.|||..|+|+ .
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr-----~ 77 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR---TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN-----I 77 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC---CCceeeEEEEEECCHHHHHHHHHHhCCCEECCe-----E
Confidence 68999999999999999999999999999999998863 356778999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|++++..
T Consensus 78 i~V~~a~~~ 86 (110)
T 3s8s_A 78 IHAQLDIKG 86 (110)
T ss_dssp CEEEECSTT
T ss_pred EEEEECCCC
Confidence 999999754
No 17
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=140.28 Aligned_cols=88 Identities=23% Similarity=0.385 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeE--------EEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRF 202 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~--------~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l 202 (232)
.+++|||+|||.++++++|+++|++||.|. .|+|+.++. .|.++|||||+|.+.++|++||+.|||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE---TGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT---TCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC---CCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 478999999999999999999999999999 699888742 245566999999999999999999999999
Q ss_pred CCCCCCcceEEEEeecCCCCCCCC
Q 026826 203 DEHDRDSVKLRLQFARYPGARSGG 226 (232)
Q Consensus 203 ~g~~~~~~~L~V~~ak~~~~r~gg 226 (232)
.++ .|+|+|++.+..+..+
T Consensus 91 ~g~-----~l~V~~a~~~~~~~~~ 109 (113)
T 2cpe_A 91 QGS-----KLKVSLARKKPPMNSG 109 (113)
T ss_dssp TTE-----ECEEECSSCCCCSTTC
T ss_pred CCC-----EEEEEECCCCCCCCCC
Confidence 999 9999999987655443
No 18
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-20 Score=138.38 Aligned_cols=88 Identities=19% Similarity=0.345 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeC
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ------GYRFD 203 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln------G~~l~ 203 (232)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++||+.|| |..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD---TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3478999999999999999999999999999999998753 24455699999999999999999999 99999
Q ss_pred CCCCCcceEEEEeecCCCCCCC
Q 026826 204 EHDRDSVKLRLQFARYPGARSG 225 (232)
Q Consensus 204 g~~~~~~~L~V~~ak~~~~r~g 225 (232)
++ .|+|+|++.+..+..
T Consensus 90 g~-----~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 90 GR-----QLKVDLAVTRDEAAS 106 (111)
T ss_dssp SC-----EEEEECCCCCCCCCC
T ss_pred CE-----EEEEEECCCCccCCC
Confidence 99 999999988754443
No 19
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=6.7e-20 Score=136.92 Aligned_cols=84 Identities=27% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---CCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE---HDR 207 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g---~~~ 207 (232)
++++|||+|||.++++++|+++|++||.|++|+|+.++. |.++|||||+|.+.++|++||+.|||..+.+ +
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~-- 87 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS-- 87 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc--
Confidence 478999999999999999999999999999999998863 5667799999999999999999999999998 7
Q ss_pred CcceEEEEeecCCCCC
Q 026826 208 DSVKLRLQFARYPGAR 223 (232)
Q Consensus 208 ~~~~L~V~~ak~~~~r 223 (232)
.|+|+|++.+..+
T Consensus 88 ---~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 ---SLVVKFADTDKES 100 (105)
T ss_dssp ---CCEEEESCSSCCC
T ss_pred ---cEEEEECccCccc
Confidence 9999999886544
No 20
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=137.93 Aligned_cols=86 Identities=28% Similarity=0.437 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecC-CCCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDAL-QGYRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~-~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L-nG~~l~g~~~~ 208 (232)
++++|||+|||.++++++|+++|++||.|+.|+|+.+ +. .|.++|||||+|.+.++|++||+.| ||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--- 87 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG---TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--- 87 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSS---SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCC---CCCcCceEEEEECCHHHHHHHHHHhccCCeECCC---
Confidence 4789999999999999999999999999999999877 31 2445569999999999999999999 99999999
Q ss_pred cceEEEEeecCCCCCC
Q 026826 209 SVKLRLQFARYPGARS 224 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+..+.
T Consensus 88 --~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 88 --RLVLEWADSEVTVQ 101 (107)
T ss_dssp --BCEEEECCCCCCCC
T ss_pred --EEEEEeCCCCCCCC
Confidence 99999998875444
No 21
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=135.55 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-----SKGFGFVTFENSADADRAREKLHGTVVEGR----- 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-----TCCEEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-----CcEEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 4789999999999999999999999999999999987643 334999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+..+.
T Consensus 84 ~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 84 KIEVNNATARVMTN 97 (103)
T ss_dssp ECEEEECCSSCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 99999998875444
No 22
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=3.6e-20 Score=140.85 Aligned_cols=86 Identities=19% Similarity=0.432 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++||+.|||..|.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ---TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK----- 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS---SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC---CCCcCccEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 368999999999999999999999999999999998762 356778999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+..+.
T Consensus 96 ~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 96 RLKVQLKRSKNDSK 109 (115)
T ss_dssp ECEEECCCCSCCCC
T ss_pred EEEEEEcCCCCcCC
Confidence 99999998875444
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=135.18 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 86 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD---TRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR----- 86 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS---SCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc-----
Confidence 478999999999999999999999999999999988753 234456999999999999999999999999999
Q ss_pred eEEEEeec
Q 026826 211 KLRLQFAR 218 (232)
Q Consensus 211 ~L~V~~ak 218 (232)
.|+|+|||
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999986
No 24
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2e-20 Score=144.36 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++||+.|||..|.++
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 92 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----- 92 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHhCCCeeCCe-----
Confidence 478999999999999999999999999999999988752 245566999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
.|+|+|++.+.
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 99999997653
No 25
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=140.33 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~---~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.....+.++|||||+|.+.++|++||+.|||..|+|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr--- 91 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR--- 91 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE---
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE---
Confidence 6799999999999999999 9999999999999988763222234567999999999999999999999999999
Q ss_pred cceEEEEeecCCC
Q 026826 209 SVKLRLQFARYPG 221 (232)
Q Consensus 209 ~~~L~V~~ak~~~ 221 (232)
.|+|+||+++.
T Consensus 92 --~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 --TLKASLGTTKY 102 (111)
T ss_dssp --EEEEESCCCCS
T ss_pred --EEEEEeccccc
Confidence 99999998864
No 26
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=137.13 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.++.....+.++|||||+|.+.++|++|++.|||..|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH----- 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe-----
Confidence 378999999999999999999999999999999998753111136678999999999999999999999999999
Q ss_pred eEEEEeecCCCCC
Q 026826 211 KLRLQFARYPGAR 223 (232)
Q Consensus 211 ~L~V~~ak~~~~r 223 (232)
.|+|+|++.+..+
T Consensus 79 ~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 79 KLEVRISERATKP 91 (98)
T ss_dssp ECEEECSSCSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999886443
No 27
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=144.78 Aligned_cols=87 Identities=21% Similarity=0.358 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
...++|||+|||.++++++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 112 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE---TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---- 112 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT---TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 4578999999999999999999999999999999998753 356778999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCC
Q 026826 210 VKLRLQFARYPGARS 224 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~ 224 (232)
.|+|+|++....+.
T Consensus 113 -~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 113 -RLKVALAASGHQRP 126 (139)
T ss_dssp -EEEEEESSCCCCCC
T ss_pred -EEEEEECCCCCCCC
Confidence 99999998875443
No 28
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=4e-20 Score=134.84 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||.++++++|+++|++||.|..|+|+.+. |.++|||||+|.+.++|++|++.|||..|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~---- 76 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLSGR---- 76 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 347899999999999999999999999999999998742 45667999999999999999999999999999
Q ss_pred ceEEEEeecCCCCC
Q 026826 210 VKLRLQFARYPGAR 223 (232)
Q Consensus 210 ~~L~V~~ak~~~~r 223 (232)
.|+|+|++.+...
T Consensus 77 -~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 77 -EIDVRIDRNASGP 89 (92)
T ss_dssp -CCCCEECSCCSSC
T ss_pred -EEEEEEcCCCCCC
Confidence 9999999986543
No 29
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=136.29 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=76.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026826 125 VPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (232)
Q Consensus 125 ~~~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~--------vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~ 196 (232)
.+.++.+.++|||+|||.++++++|+++|++||.|.+ |+++.++. .|.++|||||+|.+.++|++|++.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---TGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT---TCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC---CCCeeeEEEEEECCHHHHHHHHHH
Confidence 3444556899999999999999999999999999999 99998753 356778999999999999999999
Q ss_pred hCCceeCCCCCCcceEEEEeec
Q 026826 197 LQGYRFDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 197 LnG~~l~g~~~~~~~L~V~~ak 218 (232)
|||..|.|+ .|+|++|+
T Consensus 83 l~g~~~~g~-----~l~V~~A~ 99 (99)
T 2la6_A 83 FDGKEFSGN-----PIKVSFAT 99 (99)
T ss_dssp HTTCBSSSS-----BCEEEECC
T ss_pred hCCCEeCCc-----EEEEEecC
Confidence 999999999 99999985
No 30
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=133.62 Aligned_cols=82 Identities=22% Similarity=0.363 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++.|||..++|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA---TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR----- 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 478999999999999999999999999999999998752 256678999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|+|++.+
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 9999999864
No 31
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.4e-20 Score=137.08 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 126 PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 126 ~~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
+.+..+.++|||+|||.++++++|+++|++|| |.+|+|+.++. ..|.++|||||+|.+.++|++|| .|||..|.++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS--CTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC--CCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 34444578999999999999999999999999 99999988753 11455569999999999999999 9999999999
Q ss_pred CCCcceEEEEeecCCCCCCCC
Q 026826 206 DRDSVKLRLQFARYPGARSGG 226 (232)
Q Consensus 206 ~~~~~~L~V~~ak~~~~r~gg 226 (232)
.|+|++++.+..+..+
T Consensus 85 -----~l~V~~a~~~~~~~~~ 100 (104)
T 1wi8_A 85 -----RIRVDVADQAQDKDSG 100 (104)
T ss_dssp -----ECEEEECCCCCCCCCC
T ss_pred -----EEEEEEccCCCCCCCC
Confidence 9999999987555433
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=137.40 Aligned_cols=85 Identities=20% Similarity=0.412 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeE-EEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~-~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
.++++|||+|||.++++++|+++|++||.|. +|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--- 80 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL---TGIPAGYCFVEFADLATAEKCLHKINGKPLPGA--- 80 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS---SCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC---
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC---CCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC---
Confidence 3478999999999999999999999999999 999998753 356677999999999999999999999999999
Q ss_pred cce----EEEEeecCCCC
Q 026826 209 SVK----LRLQFARYPGA 222 (232)
Q Consensus 209 ~~~----L~V~~ak~~~~ 222 (232)
. |+|+|++....
T Consensus 81 --~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 81 --TPAKRFKLNYATYSGP 96 (99)
T ss_dssp --SSCEECCEEETTCCSS
T ss_pred --CcceeEEEeecCCCCC
Confidence 7 99999987643
No 33
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=137.00 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 84 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR----- 84 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC-----
Confidence 478999999999999999999999999999999998863 56678999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
.|+|+|++...
T Consensus 85 ~l~v~~a~~~~ 95 (114)
T 2do0_A 85 PMHVKMDERAL 95 (114)
T ss_dssp ECEEEECSCCC
T ss_pred EEEEEEcccCC
Confidence 99999997653
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.6e-20 Score=134.65 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++.|||..|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 85 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---SRRSRGFAFVYFENVDDAKEAKERANGMELDGR---- 85 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS---SSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 3478999999999999999999999999999999998753 255677999999999999999999999999999
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
.|+|+|++.
T Consensus 86 -~l~v~~a~~ 94 (95)
T 2cqc_A 86 -RIRVSGPSS 94 (95)
T ss_dssp -EEEEECCSC
T ss_pred -EEEEEecCC
Confidence 999999975
No 35
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.5e-20 Score=135.66 Aligned_cols=90 Identities=30% Similarity=0.455 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
+.++++|||+|||.++++++|+++|+.|+ .|+++.++. .+.++|||||+|.+.++|++||+.|||..|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--- 82 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE---TGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--- 82 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS---SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE---
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC---CCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe---
Confidence 34578999999999999999999999874 566776642 256677999999999999999999999999999
Q ss_pred cceEEEEeecCCCCCCCCCCC
Q 026826 209 SVKLRLQFARYPGARSGGGHR 229 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r~ggg~r 229 (232)
.|+|+|++++..++++++.
T Consensus 83 --~l~V~~a~~~~~~~~~~~~ 101 (102)
T 2fc8_A 83 --KVTLDWAKPKGEGGSGPSS 101 (102)
T ss_dssp --ECEEEECCCCCSSSCSCCC
T ss_pred --EEEEEEecCCCCCCCCCCC
Confidence 9999999988666555444
No 36
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-21 Score=140.29 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCCCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-QGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG-~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L-nG~~l~g~~~~~ 209 (232)
+++|||+|||+++||++|+++|++|| .|++|+|+.++. .|.++|||||+|.+.++|++||+.| ++..|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~---t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr---- 73 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS---SGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ---- 73 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSS---SCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCC---CCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE----
Confidence 47999999999999999999999999 899999988753 2455569999999999999999987 46689999
Q ss_pred ceEEEEeecCCCC
Q 026826 210 VKLRLQFARYPGA 222 (232)
Q Consensus 210 ~~L~V~~ak~~~~ 222 (232)
+|+|+||+++..
T Consensus 74 -~i~V~~a~~~~~ 85 (91)
T 2lxi_A 74 -KVSMHYSDPKPK 85 (91)
T ss_dssp -EEEEECCCSCCC
T ss_pred -EEEEEEcCCCCC
Confidence 999999987643
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.4e-19 Score=137.40 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++||+.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA---TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR----- 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 478999999999999999999999999999999998752 356677999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
.|+|+|++.+..
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987643
No 38
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=132.83 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||.++++++|+++|++||.|.+|+++.+ ||||+|.+.++|++|++.|||..|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~---- 72 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----------YAFVHMERAEDAVEAIRGLDNTEFQGK---- 72 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-----------EEEEEESCHHHHHHHHHHHTTEEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCeeCCc----
Confidence 34789999999999999999999999999999998733 999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCCCCCC
Q 026826 210 VKLRLQFARYPGARSGGGH 228 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~ggg~ 228 (232)
.|+|+|++.+..+..+.+
T Consensus 73 -~l~V~~a~~~~~~~~~~~ 90 (92)
T 2dgt_A 73 -RMHVQLSTSRLRTASGPS 90 (92)
T ss_dssp -EEEEEESSCCCSCCCCCC
T ss_pred -EEEEEEccCCCCCCCCCC
Confidence 999999988755444333
No 39
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.2e-19 Score=138.36 Aligned_cols=80 Identities=23% Similarity=0.464 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|++|++.|||..|+++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 110 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ---TSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK----- 110 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS---SSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---CCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 478999999999999999999999999999999988752 244556999999999999999999999999999
Q ss_pred eEEEEeec
Q 026826 211 KLRLQFAR 218 (232)
Q Consensus 211 ~L~V~~ak 218 (232)
.|+|+|+|
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999986
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=138.72 Aligned_cols=80 Identities=16% Similarity=0.358 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCC--eEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVG--YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY----RFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~--i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~----~l~g~ 205 (232)
-+||||+|||+++|+++|+++|++||. +.+|+|+.++. .|.++|||||+|.+.++|++|++.|||. .|+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~---tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ---TQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS---SSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC---CCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 679999999999999999999999995 67899988763 2556679999999999999999999997 58999
Q ss_pred CCCcceEEEEeecC
Q 026826 206 DRDSVKLRLQFARY 219 (232)
Q Consensus 206 ~~~~~~L~V~~ak~ 219 (232)
+|+|+||++
T Consensus 86 -----~i~V~~Aks 94 (95)
T 2lkz_A 86 -----TIGVDFAKS 94 (95)
T ss_dssp -----EEEEEECCC
T ss_pred -----EEEEEEccC
Confidence 999999986
No 41
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=139.50 Aligned_cols=83 Identities=22% Similarity=0.422 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
+..++|||+|||.++++++|+++|++||.|++|+|+.++. |.++|||||+|.+.++|++|++.|||..|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~---- 76 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT----SKSRGFAFITFENPADAKNAAKDMNGKSLHGK---- 76 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT----TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 3478999999999999999999999999999999998863 44556999999999999999999999999999
Q ss_pred ceEEEEeecCCC
Q 026826 210 VKLRLQFARYPG 221 (232)
Q Consensus 210 ~~L~V~~ak~~~ 221 (232)
.|+|+|++.+.
T Consensus 77 -~l~V~~a~~~~ 87 (116)
T 2fy1_A 77 -AIKVEQAKKPS 87 (116)
T ss_dssp -BCEEEECCCSS
T ss_pred -EEEEEECCCCC
Confidence 99999998764
No 42
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=135.98 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
...++|||+|||+++++++|+++|++||.|++|+|+.+ | ||||+|.+.++|++||+.|||..|.++....
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------T----EEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------C----EEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34789999999999999999999999999999999876 3 9999999999999999999999999921111
Q ss_pred ceEEEEeecCCC
Q 026826 210 VKLRLQFARYPG 221 (232)
Q Consensus 210 ~~L~V~~ak~~~ 221 (232)
..|+|++++.+.
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 299999998764
No 43
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=133.31 Aligned_cols=86 Identities=23% Similarity=0.347 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL---TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR----- 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT---TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 378999999999999999999999999999999988762 244556999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|++++.+..+.
T Consensus 79 ~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 79 MLHVLPSTIKKEAS 92 (99)
T ss_dssp EEEEEECCCCSTTC
T ss_pred EEEEEEcCCCcccc
Confidence 99999999875443
No 44
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=134.96 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.+.++|||+|||.++++++|+++|++||.|++|+|+.++. |.++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 85 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR---- 85 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCC----
Confidence 3478999999999999999999999999999999998764 56677999999999999999999999999999
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
.|+|+|+++
T Consensus 86 -~l~V~~a~~ 94 (95)
T 2ywk_A 86 -PINVSGPSS 94 (95)
T ss_dssp -ECEEECCCC
T ss_pred -EEEEEEcCC
Confidence 999999875
No 45
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=131.67 Aligned_cols=81 Identities=19% Similarity=0.393 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|++|+++. | ||||+|.+.++|++|++.|||..|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~g~----- 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK-------N----YGFVHIEDKTAAEDAIRNLHHYKLHGV----- 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET-------T----EEEEEESSHHHHHHHHHHHTTCBCSSC-----
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-------C----EEEEEECCHHHHHHHHHHhcCCccCCc-----
Confidence 478999999999999999999999999999999971 2 999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCCC
Q 026826 211 KLRLQFARYPGARSGGG 227 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ggg 227 (232)
.|+|+|++.+..+..++
T Consensus 71 ~l~v~~a~~~~~~~~~~ 87 (90)
T 2dnq_A 71 NINVEASKNKSKASSGP 87 (90)
T ss_dssp BCEEECSSCCCCCCSSC
T ss_pred EEEEEECCCCCCCCCCC
Confidence 99999999876554433
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=6.3e-20 Score=131.71 Aligned_cols=80 Identities=20% Similarity=0.362 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---TEKHRGFAFVEFELAEDAAAAIDNMNESELFGR----- 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT---TTEECSEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC---CCccccEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 478999999999999999999999999999999987742 244556999999999999999999999999999
Q ss_pred eEEEEeec
Q 026826 211 KLRLQFAR 218 (232)
Q Consensus 211 ~L~V~~ak 218 (232)
.|+|+|||
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999986
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.5e-19 Score=129.20 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=74.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+.+|||+|||.++++++|+++|++||.|.+|+++.+.. .|.++|||||+|.+.++|++|++.|||..|+|+ .
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-----~ 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ---TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR-----P 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-----E
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---CCCccceEEEEECCHHHHHHHHHHhcCCeeCCc-----E
Confidence 36899999999999999999999999999999988752 356678999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|++.+
T Consensus 73 l~v~~a~~~ 81 (83)
T 3md1_A 73 LRINWAAKL 81 (83)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCcC
Confidence 999999875
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3.9e-20 Score=141.35 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||+++|+++|+++|++||.|++|+|+.++. .++|||||+|.+.++|++||+.|||..|+|+ .
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-----~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~-----~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-----GSKGYGFVHFETQEAAERAIEKMNGMLLNDR-----K 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-----EEEEEEEEEESCHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-----CCCceEEEEECCHHHHHHHHHHcCCCEECCE-----E
Confidence 67899999999999999999999999999999998853 2456999999999999999999999999999 9
Q ss_pred EEEEeecCCCCC
Q 026826 212 LRLQFARYPGAR 223 (232)
Q Consensus 212 L~V~~ak~~~~r 223 (232)
|+|++++.+..+
T Consensus 75 i~V~~a~~~~~~ 86 (115)
T 4f25_A 75 VFVGRFKSRKER 86 (115)
T ss_dssp CEEEESSCCCC-
T ss_pred EEEEECCCcccc
Confidence 999999876443
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=136.45 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----- 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCceeeEEEEEECCHHHHHHHHHHhcCCEECCc-----
Confidence 478999999999999999999999999999999988753 256678999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
.|+|+|++.+..
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 999999987643
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=135.97 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++||+. |+..|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~----- 85 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT---TNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR----- 85 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---SCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCCcceEEEEEECCHHHHHHHHHh-CCCeECCE-----
Confidence 478999999999999999999999999999999998752 256677999999999999999998 99999999
Q ss_pred eEEEEeecCCCCCCC
Q 026826 211 KLRLQFARYPGARSG 225 (232)
Q Consensus 211 ~L~V~~ak~~~~r~g 225 (232)
.|+|++++.+..+..
T Consensus 86 ~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 86 NIDPKPCTPRGMQPS 100 (105)
T ss_dssp EEBCCCSCCSSCCTT
T ss_pred EEEEEEccCCCCCCC
Confidence 999999988755443
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.1e-19 Score=133.94 Aligned_cols=82 Identities=15% Similarity=0.329 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|+|+ .
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-----~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR-----F 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---CCccceEEEEEECCHHHHHHHHHHhCCCeECCe-----E
Confidence 68999999999999999999999999999999988752 245556999999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+|++.+.
T Consensus 74 l~V~~a~~~~ 83 (96)
T 2x1f_A 74 LKCGYSSNSD 83 (96)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCCCC
Confidence 9999998763
No 52
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.5e-19 Score=144.55 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
..++++|||+|||.++|+++|+++|++||.|++|+|+.++. .+.++|||||+|.+.++|++||+.|||..|+++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--- 109 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM---KKTACGFCFVEYYSRADAENAMRYINGTRLDDR--- 109 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECCe---
Confidence 34578999999999999999999999999999999998763 355677999999999999999999999999999
Q ss_pred cceEEEEeecCCC
Q 026826 209 SVKLRLQFARYPG 221 (232)
Q Consensus 209 ~~~L~V~~ak~~~ 221 (232)
.|+|+|++.+.
T Consensus 110 --~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 --IIRTDWDAGFK 120 (156)
T ss_dssp --ECEEEEESCCC
T ss_pred --EEEEEECCCCC
Confidence 99999998753
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=131.66 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=75.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|.+|+|+.+... ++.++|||||+|.+.++|++|++.|||..|+|+ .
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 76 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH--PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ-----E 76 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE--EEEECSEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC--CCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe-----E
Confidence 679999999999999999999999999999999887521 122445999999999999999999999999999 9
Q ss_pred EEEEeecCCCCC
Q 026826 212 LRLQFARYPGAR 223 (232)
Q Consensus 212 L~V~~ak~~~~r 223 (232)
|+|++++++..|
T Consensus 77 l~v~~a~~~~~R 88 (88)
T 4a8x_A 77 ITATAVLAPWPR 88 (88)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999887543
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1.8e-19 Score=134.96 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||+++++++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 98 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAMKQYNGVPLDGR---- 98 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTCEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc----
Confidence 3478999999999999999999999999999999998863 56677999999999999999999999999999
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
.|+|+|+.+
T Consensus 99 -~l~V~~a~s 107 (107)
T 3ulh_A 99 -PMNIQLVTS 107 (107)
T ss_dssp -ECEEEEECC
T ss_pred -EEEEEEeCC
Confidence 999999863
No 55
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=135.31 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++|+++|+++|++|| +++|+|+.++. |+++|||||+|.+.++|++|| .+|+..|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr----- 82 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----GRVTGEADVEFATHEDAVAAM-AKDKANMQHR----- 82 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----SCEEEEEEEECSSSHHHHHHH-TTSSCCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----CCEeeEEEEEECCHHHHHHHH-HhCCCeECCc-----
Confidence 468999999999999999999999999 55999998863 667789999999999999999 5799999999
Q ss_pred eEEEEeecCCCCCCC
Q 026826 211 KLRLQFARYPGARSG 225 (232)
Q Consensus 211 ~L~V~~ak~~~~r~g 225 (232)
.|+|..+..+....+
T Consensus 83 ~i~V~~~~~~~~~~~ 97 (102)
T 1wez_A 83 YVELFLNSTAGTSGS 97 (102)
T ss_dssp CCEEEEECCCCCCCC
T ss_pred EEEEEECCCCCCCCC
Confidence 999999987654333
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.2e-19 Score=136.77 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|+.|++.|||..|.|+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 96 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---TGFSKGYALVEYETHKQALAAKEALNGAEIMGQ----- 96 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT---TSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHcCCCEECCc-----
Confidence 478999999999999999999999999999999988752 245566999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
.|+|+|++.+..
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 999999987643
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.1e-19 Score=141.95 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
+++++|||+|||.++++++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|++||+.|||..|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~---- 116 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---SRRSRGFAFVYFENVDDAKEAKERANGMELDGR---- 116 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS---SSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 3478999999999999999999999999999999998752 244556999999999999999999999999999
Q ss_pred ceEEEEeecCCCC
Q 026826 210 VKLRLQFARYPGA 222 (232)
Q Consensus 210 ~~L~V~~ak~~~~ 222 (232)
.|+|+|++.+.+
T Consensus 117 -~l~V~~a~~~~p 128 (129)
T 2kxn_B 117 -RIRVDFSITKRP 128 (129)
T ss_dssp -CCEESCCSSSSC
T ss_pred -EEEEEEecCCCC
Confidence 999999987643
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=132.64 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~----~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
.+++|||+|||+++++++|+ ++|++||.|++|+|+.++.. ++||||+|.+.++|++|++.|||..|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------rg~afV~f~~~~~A~~Ai~~l~g~~~~gr- 80 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY------QLKAVVQMENLQDAIGAVNSLHRYKIGSK- 80 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST------TCCEEEEESSHHHHHHHHHHHTTEEETTE-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC------CeEEEEEECCHHHHHHHHHHhCCCEECCe-
Confidence 37899999999999999999 99999999999999988643 23999999999999999999999999999
Q ss_pred CCcceEEEEeecCCCCCC
Q 026826 207 RDSVKLRLQFARYPGARS 224 (232)
Q Consensus 207 ~~~~~L~V~~ak~~~~r~ 224 (232)
.|+|++++.+...+
T Consensus 81 ----~l~V~~a~~~~~~~ 94 (96)
T 2dgx_A 81 ----KILVSLATGASGPS 94 (96)
T ss_dssp ----EEEEEECCCSSCCC
T ss_pred ----EEEEEEcCCCCCCC
Confidence 99999998765433
No 59
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4e-19 Score=131.62 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|++|+++.++ | ||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-----g----~afV~f~~~~~a~~a~~~l~g~~~~g~----- 79 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-----G----FGFIRLETRTLAEIAKVELDNMPLRGK----- 79 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-----T----EEEEECSSSHHHHHHHHHHTTCCBTTB-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCEeCCc-----
Confidence 37899999999999999999999999999999998652 3 999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCCC
Q 026826 211 KLRLQFARYPGARSGGG 227 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ggg 227 (232)
.|+|+|++.+.....+.
T Consensus 80 ~l~v~~a~~~~~~~~g~ 96 (99)
T 2cpj_A 80 QLRVRFACHSASLTSGP 96 (99)
T ss_dssp CCEEEESSCCSCCCCCC
T ss_pred eEEEEEcCCCCCCCCCC
Confidence 99999999875544433
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=134.56 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCCCC
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR-FDEHDR 207 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~-fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~-l~g~~~ 207 (232)
.++++|||+|||.++|+++|+++|++ ||.|.+|+|+.++. |.++|||||+|.+.++|++|++.|||.. |.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~-- 80 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT----GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK-- 80 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT----CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS--
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHHHccCCcccCCE--
Confidence 34789999999999999999999999 99999999998853 5567799999999999999999999999 9999
Q ss_pred CcceEEEEeecCCCCC
Q 026826 208 DSVKLRLQFARYPGAR 223 (232)
Q Consensus 208 ~~~~L~V~~ak~~~~r 223 (232)
.|+|+|++.+..+
T Consensus 81 ---~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 81 ---PVRLSVAIPKASR 93 (104)
T ss_dssp ---CCCCCBCCCCCSC
T ss_pred ---eEEEEEccCCCcC
Confidence 9999999876443
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=135.51 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|+.|++.|||..|.|+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~---- 96 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE---TGRSKGYGFITFSDSECAKKALEQLNGFELAGR---- 96 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT---TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCE----
Confidence 3478999999999999999999999999999999998753 356778999999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.|+|+|++.+
T Consensus 97 -~l~V~~a~~k 106 (108)
T 2jrs_A 97 -PMKVGHVTER 106 (108)
T ss_dssp -CCEEECSCSS
T ss_pred -EEEEEEcccC
Confidence 9999999875
No 62
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=135.86 Aligned_cols=77 Identities=12% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCCC
Q 026826 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY--RFDEHD 206 (232)
Q Consensus 130 ~~~~tLfV~nLp~-~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~--~l~g~~ 206 (232)
+++++|||+|||+ ++|+++|+++|++||.|++|+|+.++ | ||||+|++.++|+.||+.||+. .|.|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr- 82 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----N----EAFIEMATTEDAQAAVDYYTTTPALVFGK- 82 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-----S----CEEEEESSHHHHHHHHHHHHHSCCEETTE-
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHHcCCCceECCc-
Confidence 3488999999999 99999999999999999999998763 2 9999999999999999999864 59999
Q ss_pred CCcceEEEEeecCC
Q 026826 207 RDSVKLRLQFARYP 220 (232)
Q Consensus 207 ~~~~~L~V~~ak~~ 220 (232)
+|+|+||+..
T Consensus 83 ----~l~V~~a~~~ 92 (102)
T 1x4d_A 83 ----PVRVHLSQKY 92 (102)
T ss_dssp ----ECEEEEECCC
T ss_pred ----EEEEEECCCC
Confidence 9999999864
No 63
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=135.54 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR--FDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~--l~g~~~~ 208 (232)
++++|||+|||+++|+++|+++|++||.|++|+++..+ | ||||+|++.++|.+|++.||+.. |.|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~AFVef~~~~~A~~Av~~ln~~~~~i~Gr--- 87 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-----R----QALVEFEDVLGACNAVNYAADNQIYIAGH--- 87 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCEEETTE---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhcCCCceeCCc---
Confidence 48899999999999999999999999999999998642 3 99999999999999999999986 7799
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
+|+|+||+.+
T Consensus 88 --~i~V~~S~~k 97 (100)
T 3r27_A 88 --PAFVNYSTSQ 97 (100)
T ss_dssp --EEEEEECSCS
T ss_pred --EEEEEecccc
Confidence 9999999875
No 64
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.6e-19 Score=131.53 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL--QGYRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L--nG~~l~g~~~~ 208 (232)
++++|||+|||+++++++|+++|++||.|++|+|+.++ | ||||+|.+.++|++|++.| ++..|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr--- 81 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-----N----QAFLELATEEAAITMVNYYSAVTPHLRNQ--- 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCEETTE---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCc---
Confidence 47899999999999999999999999999999988752 3 9999999999999999987 46789999
Q ss_pred cceEEEEeecCCCCC
Q 026826 209 SVKLRLQFARYPGAR 223 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r 223 (232)
+|+|+|++.+...
T Consensus 82 --~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 --PIYIQYSNHKELK 94 (101)
T ss_dssp --ECEEEECSCSSCC
T ss_pred --EEEEEEcCcccCc
Confidence 9999999876443
No 65
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=130.63 Aligned_cols=78 Identities=22% Similarity=0.445 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD--EHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~--g~~~~ 208 (232)
++++|||+|||.++++++|+++|++||.|++|++..++ | ||||+|.+.++|++|++.|||..|. ++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~~g~--- 83 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-----S----FAYIQYESLDAAQAACAKMRGFPLGGPDR--- 83 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS-----C----CEEEEESSHHHHHHHHHHHTTCBCSSSSC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC-----C----EEEEEECCHHHHHHHHHHHCCCEeCCCCc---
Confidence 37899999999999999999999999999999998652 3 9999999999999999999999999 88
Q ss_pred cceEEEEeecCCCC
Q 026826 209 SVKLRLQFARYPGA 222 (232)
Q Consensus 209 ~~~L~V~~ak~~~~ 222 (232)
.|+|+|++++..
T Consensus 84 --~l~V~~a~~~~~ 95 (97)
T 1why_A 84 --RLRVDFAKSGPS 95 (97)
T ss_dssp --BCEEEECCCCCC
T ss_pred --EEEEEECCCCCC
Confidence 999999998643
No 66
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.4e-19 Score=130.82 Aligned_cols=82 Identities=17% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.| +++.+.. |+++|||||+|.+.++|++||+.|||..|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQN----GKSKGYAFIEFASFEDAKEALNSCNKREIEGR----- 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSS----SCBCSEEEEECSSHHHHHHHHHHTSSEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCC----CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe-----
Confidence 47899999999999999999999999976 4555533 44556999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+..+.
T Consensus 82 ~l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 82 AIRLELQGPRGSPN 95 (101)
T ss_dssp EEEEEECSSCCCCC
T ss_pred EEEEEEcCCCCCCC
Confidence 99999998875443
No 67
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-18 Score=130.21 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++||+ ++..|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~----- 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK---TGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR----- 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHHH--SCEEETTE-----
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC---CCCccceEEEEECCHHHHHHHHH--cCCeeCCe-----
Confidence 478999999999999999999999999999999998753 35677899999999999999997 57899999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+....
T Consensus 84 ~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 84 WCDCKLPNSKQSQD 97 (103)
T ss_dssp EEEEECCCTTCCCC
T ss_pred EEEEEecCCCCcCC
Confidence 99999998875443
No 68
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=132.85 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++++++|+++|++||.|.+++++.++. .|+++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~----- 85 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR----- 85 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS---SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC---CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe-----
Confidence 368999999999999999999999999998887777642 356778999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|++++.+
T Consensus 86 ~l~V~~a~~~ 95 (98)
T 2cqp_A 86 KVKLVLGSGP 95 (98)
T ss_dssp ECEEEESSCS
T ss_pred EEEEEEcCCC
Confidence 9999999865
No 69
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-19 Score=135.47 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=76.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++||+. |+..|+++ .
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~-----~ 97 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA---SKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR-----V 97 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT---TSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC---CCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE-----E
Confidence 58999999999999999999999999999999998752 244556999999999999999987 99999999 9
Q ss_pred EEEEeecCCCCCCCCC
Q 026826 212 LRLQFARYPGARSGGG 227 (232)
Q Consensus 212 L~V~~ak~~~~r~ggg 227 (232)
|+|++++.+..+..++
T Consensus 98 l~V~~a~~~~~~~~~~ 113 (116)
T 1x4b_A 98 VEPKRAVAREESGSGP 113 (116)
T ss_dssp EEEECCSSCCCCCCSC
T ss_pred EEEEECCCCccCCCCC
Confidence 9999999875554433
No 70
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=136.71 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG--YRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG--~~l~g~~~~ 208 (232)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|.+.++|++|++.|++ ..|.|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr--- 82 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRGQ--- 82 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTSCCEETTE---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCE---
Confidence 47899999999999999999999999999999998763 3 999999999999999998864 789999
Q ss_pred cceEEEEeecCCCC
Q 026826 209 SVKLRLQFARYPGA 222 (232)
Q Consensus 209 ~~~L~V~~ak~~~~ 222 (232)
+|+|+||+.+..
T Consensus 83 --~l~V~~A~~~~~ 94 (105)
T 1sjq_A 83 --PIYIQFSNHKEL 94 (105)
T ss_dssp --ECCBCCCSSSSC
T ss_pred --EEEEEEcCCCCC
Confidence 999999987643
No 71
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=128.44 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~f--G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
++++|||+|||+++++++|+++|++| |.|..|++.. | ||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~g~--- 79 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------D----YAFVHFSNREDAVEAMKALNGKVLDGS--- 79 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS-------S----EEEEEESSHHHHHHHHHHHSSEEETTE---
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC-------C----eEEEEeCCHHHHHHHHHHhCCCEeCCc---
Confidence 47899999999999999999999999 9999988752 2 999999999999999999999999999
Q ss_pred cceEEEEeecCCCCC
Q 026826 209 SVKLRLQFARYPGAR 223 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r 223 (232)
.|+|+|++.+..+
T Consensus 80 --~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 80 --PIEVTLAKPVDKD 92 (99)
T ss_dssp --EEEEECCCCCCCC
T ss_pred --EEEEEECCCCCCC
Confidence 9999999986543
No 72
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=129.31 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++|+++|+++|++||.|.+|+++.+ ||||+|.+.++|++|++.|||..|.++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~----- 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----------YAFVHMEKEADAKAAIAQLNGKEVKGK----- 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------CEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 4789999999999999999999999999999999733 999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCC
Q 026826 211 KLRLQFARYPGARSGG 226 (232)
Q Consensus 211 ~L~V~~ak~~~~r~gg 226 (232)
.|+|+|++.+..++++
T Consensus 72 ~l~v~~a~~~~~~~~~ 87 (90)
T 2dnp_A 72 RINVELSTKGQKKSGP 87 (90)
T ss_dssp ECEEEESCCCCCCCSC
T ss_pred EEEEEECCCCCCCCCC
Confidence 9999999987555443
No 73
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=7.3e-20 Score=133.61 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=69.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG--~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~---~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr----- 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----- 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT---TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC-----
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC---CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE-----
Confidence 4799999999999999999999999 999999998753 366778999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
.|+|++++++.
T Consensus 74 ~i~V~~~~~~~ 84 (90)
T 3p5t_L 74 NPVVTPSNKLE 84 (90)
T ss_dssp CCEECCC----
T ss_pred EEEEEECCCCc
Confidence 99999998764
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-20 Score=131.79 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 75 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT---TNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ---- 75 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS---SCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE----
Confidence 3478999999999999999999999999999999998752 245556999999999999999999999999999
Q ss_pred ceEEEEeec
Q 026826 210 VKLRLQFAR 218 (232)
Q Consensus 210 ~~L~V~~ak 218 (232)
.|+|++++
T Consensus 76 -~~~~~~~~ 83 (85)
T 1x4e_A 76 -MAKQSGPS 83 (85)
T ss_dssp -SCCSSCCC
T ss_pred -EEeecCCC
Confidence 88887764
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=4.6e-19 Score=143.40 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|..|+|+.++. .|.++|||||+|.+.++|+.||+.|||..|.|+
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 142 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---TGFSKGYALVEYETHKQALAAKEALNGAEIMGQ----- 142 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC---CCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 478999999999999999999999999999999998752 356778999999999999999999999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|+|++.+..+.
T Consensus 143 ~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 143 TIQVDWCFVKGPKR 156 (165)
T ss_dssp ECEEEESEECC---
T ss_pred EEEEEEecCCCCCC
Confidence 99999998765443
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=132.75 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. .++++|||||+|.+.++|++||+.||+ .|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~----- 86 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ---TGKSRGYGFVTMADRAAAERACKDPNP-IIDGR----- 86 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS---SCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHhCCC-cCCCE-----
Confidence 478999999999999999999999999999999998752 244556999999999999999999998 89999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|+|++..
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 9999999653
No 77
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=131.86 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY--RFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~--~l~g~~~~ 208 (232)
++++|||+|||+++++++|+++|++||.|++|+|+.++ | ||||+|.+.++|++|++.||+. .|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr--- 81 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-----R----QALVEFENIDSAKECVTFAADVPVYIAGQ--- 81 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCBSSSS---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCE---
Confidence 47899999999999999999999999999999998652 3 9999999999999999999765 48898
Q ss_pred cceEEEEeecCCCC
Q 026826 209 SVKLRLQFARYPGA 222 (232)
Q Consensus 209 ~~~L~V~~ak~~~~ 222 (232)
+|+|+|++.+..
T Consensus 82 --~l~V~~a~~~~~ 93 (104)
T 1wex_A 82 --QAFFNYSTSKRI 93 (104)
T ss_dssp --BCEEEECSSSSC
T ss_pred --EEEEEEccCccc
Confidence 999999987643
No 78
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=7.8e-19 Score=132.57 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~-~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.+++|||+|||++ +++++|+++|++||.|.+|+|. +| ||||+|.+.++|++|++.|||..|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~A~~~l~g~~~~g~---- 90 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------KG----YAFVQYSNERHARAAVLGENGRVLAGQ---- 90 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------TT----EEEEECSSSHHHHHHHHHHTTCEETTE----
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCEECCe----
Confidence 4689999999999 9999999999999999999981 13 999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCCCCCCCC
Q 026826 210 VKLRLQFARYPGARSGGGHRG 230 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~ggg~rG 230 (232)
.|+|+|++.+..+..+.++|
T Consensus 91 -~l~V~~a~~~~~~~~~~~~G 110 (110)
T 1wf1_A 91 -TLDINMAGEPKPDRSGPSSG 110 (110)
T ss_dssp -ECCEEESCCCCSCCCCCCCC
T ss_pred -EEEEEECCCCCCCCCCCCCC
Confidence 99999998765444444443
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=126.84 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++++++|+++|++| .|.+|+|+.+.. |+++|||||+|.+.++|++|++ |||..|.++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr----- 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----GNKTGYIFVDFSNEEEVKQALK-CNREYMGGR----- 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----SCEEEEEEEECSSHHHHHHHHH-SCSEEETTE-----
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-hCCceeCCc-----
Confidence 47899999999999999999999999 999999998843 5667799999999999999999 999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|.+++.+
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 9999999875
No 80
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.4e-19 Score=134.89 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=73.6
Q ss_pred CcEEEEcCCCC------CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 026826 132 SSTLFVEGLPS------DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE- 204 (232)
Q Consensus 132 ~~tLfV~nLp~------~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g- 204 (232)
+++|||+|||. ++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|++
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~---tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA---TGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT---TTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 68999999999 999999999999999999999998763 25566799999999999999999999999999
Q ss_pred CCCCcceEEEEeecC
Q 026826 205 HDRDSVKLRLQFARY 219 (232)
Q Consensus 205 ~~~~~~~L~V~~ak~ 219 (232)
+ .|+|+++++
T Consensus 83 r-----~l~V~~a~~ 92 (100)
T 3ns6_A 83 H-----RLFLYTMKD 92 (100)
T ss_dssp C-----BCEEEESHH
T ss_pred e-----EEEEEECch
Confidence 8 999999865
No 81
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=6.7e-19 Score=133.66 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 127 ~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
+|++++++|||+|||.++++++|+++|++||.|.+|+|+.+.. .+|||||+|.+.++|++|++.|||..|.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 75 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE------TRGTAYVVYEDIFDAKNAVDHLSGFNVSNR- 75 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT------TTTCEEEEESSHHHHHHHHHHHTTCBSSSC-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC------CCcEEEEEECCHHHHHHHHHHcCCCEECCe-
Confidence 3455689999999999999999999999999999999986532 234999999999999999999999999999
Q ss_pred CCcceEEEEeecCC
Q 026826 207 RDSVKLRLQFARYP 220 (232)
Q Consensus 207 ~~~~~L~V~~ak~~ 220 (232)
.|+|+|++.+
T Consensus 76 ----~l~v~~a~~~ 85 (115)
T 3lqv_A 76 ----YLVVLYYNAN 85 (115)
T ss_dssp ----BCEEEECCHH
T ss_pred ----EEEEEEecCC
Confidence 9999999754
No 82
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=134.03 Aligned_cols=84 Identities=20% Similarity=0.410 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCe----EEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i----~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
.++++|||+|||.++|+++|+++|++||.| ..+++.. |+++|||||+|.+.++|+.||+.|||..|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-------GRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-------SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-------CccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 357899999999999999999999999999 5566552 33445999999999999999999999999999
Q ss_pred CCCcceEEEEeecCCCCCCC
Q 026826 206 DRDSVKLRLQFARYPGARSG 225 (232)
Q Consensus 206 ~~~~~~L~V~~ak~~~~r~g 225 (232)
.|+|+|++.+..+..
T Consensus 96 -----~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 96 -----ILVIEFGKNKKQRSS 110 (115)
T ss_dssp -----BCEEEECCCCSCCCC
T ss_pred -----EEEEEEccCCCCCCC
Confidence 999999998755543
No 83
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=1.3e-18 Score=129.88 Aligned_cols=75 Identities=21% Similarity=0.429 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++|+++|+++|++||.|.+|+|+.+ ||||+|.+.++|++|++.|||..|.++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~----- 73 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-----------YAFIHFDERDGAVKAMEEMNGKDLEGE----- 73 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------CEEEEESSHHHHHHHHHHHTTEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------EEEEEeCCHHHHHHHHHHHCCCccCCC-----
Confidence 3689999999999999999999999999999998732 999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
.|+|+|++.+.
T Consensus 74 ~l~v~~a~~~~ 84 (103)
T 2dgu_A 74 NIEIVFAKPPD 84 (103)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEcCCCc
Confidence 99999998763
No 84
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.2e-19 Score=128.98 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCC-eEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG-YRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~-i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG-~~l~g~~~~ 208 (232)
..++|||+|||.++|+++|+++|++||. |..+.+.. .| ||||+|.+.++|++|++.||| ..|+++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~------~g----~afV~f~~~~~A~~A~~~l~g~~~~~g~--- 73 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SG----YAFVDYPDQNWAIRAIETLSGKVELHGK--- 73 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE------TT----EEEECCSCHHHHHHHHHHHTTTCEETTE---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC------CC----EEEEEECCHHHHHHHHHHccCCeeECCE---
Confidence 4789999999999999999999999999 66555532 13 999999999999999999999 999999
Q ss_pred cceEEEEeecCCCCCCCCCC
Q 026826 209 SVKLRLQFARYPGARSGGGH 228 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r~ggg~ 228 (232)
.|+|+|++.+..++.+..
T Consensus 74 --~l~v~~a~~~~~~~~~~~ 91 (93)
T 2cqh_A 74 --IMEVDYSVSKKLRSSGPS 91 (93)
T ss_dssp --ECEEEECCCCCCCCCSCC
T ss_pred --EEEEEEccCccccCCCCC
Confidence 999999998765554433
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=7.7e-18 Score=129.67 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
+.++++|||+|||.++++++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||..|.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--- 104 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDGR--- 104 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS----SSCCSEEEEEESSHHHHHHHHHHHTTEESSSC---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC----CCEeeEEEEEECCHHHHHHHHHHcCCCEECCc---
Confidence 34578999999999999999999999999999999998763 44556999999999999999999999999999
Q ss_pred cceEEEEeecCCC
Q 026826 209 SVKLRLQFARYPG 221 (232)
Q Consensus 209 ~~~L~V~~ak~~~ 221 (232)
.|+|+||....
T Consensus 105 --~l~V~~a~~~~ 115 (124)
T 2kt5_A 105 --PMDIQLVASQI 115 (124)
T ss_dssp --EEEEEEECCTT
T ss_pred --EEEEEEeCCCC
Confidence 99999998753
No 86
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=134.91 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG--YRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG--~~l~g~~~~ 208 (232)
++++|||+|||+++|+++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..|.|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr--- 97 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRGQ--- 97 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-----T----EEEEECSCHHHHHHHHHHHHHHCCCBTTB---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCe---
Confidence 37899999999999999999999999999999999763 3 999999999999999999984 689999
Q ss_pred cceEEEEeecCCCCC
Q 026826 209 SVKLRLQFARYPGAR 223 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r 223 (232)
+|+|+||+.+..+
T Consensus 98 --~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 --PIYIQFSNHKELK 110 (119)
T ss_dssp --CCEEEECSSSSCC
T ss_pred --EEEEEEccCCCCC
Confidence 9999999886443
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1e-18 Score=134.39 Aligned_cols=81 Identities=11% Similarity=0.261 Sum_probs=73.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|+ .|||..|+|+ .
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~-----~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF---SGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR-----T 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT---TSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcccEEEEEECCHHHHHHHH-hcCCCeECCe-----E
Confidence 57999999999999999999999999999999998752 2566779999999999999999 8999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+|++...
T Consensus 107 l~V~~a~~~~ 116 (124)
T 2jwn_A 107 IKVLPKRTNM 116 (124)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=133.35 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE---TGKPKGYGFCEYQDQETALSAMRNLNGREFSGR----- 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT---TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS-----
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC---CCccceEEEEEECCHHHHHHHHHHhCCCeeCCc-----
Confidence 367999999999999999999999999999999998752 356678999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
.|+|+|++.+.
T Consensus 79 ~l~v~~a~~~~ 89 (104)
T 1p1t_A 79 ALRVDNAASEK 89 (104)
T ss_dssp CBEEEETTCTT
T ss_pred EEEEEeCCCcc
Confidence 99999998764
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=3.7e-19 Score=130.37 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||+++++++|+++|++||.|.+++++.++. .|.++|||||+|.+.++|++|++.|||..|.++ .
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr-----~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR-----K 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT---TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC---CCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc-----E
Confidence 68999999999999999999999999999888887642 356778999999999999999999999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|+++.+
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999864
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=138.15 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY----RFDE 204 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~--vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~----~l~g 204 (232)
.+++|||+|||+++|+++|+++|++||.|.. |+|+.++. .|+++|||||+|.+. +|++|++.|||. .|+|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~---tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ---TQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS---SSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC---CCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4789999999999999999999999999976 99998862 245667999999999 999999999999 9999
Q ss_pred CCCCcceEEEEeecCCCC
Q 026826 205 HDRDSVKLRLQFARYPGA 222 (232)
Q Consensus 205 ~~~~~~~L~V~~ak~~~~ 222 (232)
+ .|+|+|++....
T Consensus 98 r-----~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 K-----TINVEFAKGSKR 110 (131)
T ss_dssp C-----CCCCEECCCSCC
T ss_pred E-----EEEEEECCCCCC
Confidence 9 999999987643
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=131.95 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.|||..|.|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-----~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-----SKGFGFVTFENSADADRAREKLHGTVVEGR----- 97 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-----CTTEEEEECCCSHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-----CceEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 4789999999999999999999999999999999987643 345999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|+|++.+
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999875
No 92
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.2e-18 Score=125.99 Aligned_cols=80 Identities=15% Similarity=0.305 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|+ .|||..|.++ .
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~-----~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF---SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR-----Q 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS---SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHH-hcCCCEECCc-----E
Confidence 57999999999999999999999999999999998752 2455679999999999999999 9999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|++++.+
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999999874
No 93
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-19 Score=136.06 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|| .|||..|.|+ .
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~-----~ 95 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN---SRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV-----P 95 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC---SSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC---CCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe-----E
Confidence 57999999999999999999999999999999998763 2445569999999999999999 9999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+|++.+.
T Consensus 96 l~V~~a~~~~ 105 (114)
T 2cq4_A 96 IIVQASQAEK 105 (114)
T ss_dssp EEEEEHHHHH
T ss_pred EEEEecCCCc
Confidence 9999997653
No 94
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=129.59 Aligned_cols=86 Identities=16% Similarity=0.308 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC---
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR--- 207 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~--- 207 (232)
..++|||+|||.++++++|+++|++||.|.+|+|+.++. |.++|||||+|.+.++|++|++.|||..|+++..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS----GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSS----SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 368999999999999999999999999999999998863 5667799999999999999999999999964421
Q ss_pred CcceEEEEeecCC
Q 026826 208 DSVKLRLQFARYP 220 (232)
Q Consensus 208 ~~~~L~V~~ak~~ 220 (232)
...+|+|.|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 2238999999864
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=1.9e-18 Score=124.76 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++ +++..|+|+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~---- 80 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN---TGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR---- 80 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---CCccccEEEEEECCHHHHHHHHH-hCCCEECCE----
Confidence 3478999999999999999999999999999999998753 35677899999999999999995 588999999
Q ss_pred ceEEEEee
Q 026826 210 VKLRLQFA 217 (232)
Q Consensus 210 ~~L~V~~a 217 (232)
.|+|++|
T Consensus 81 -~i~v~~A 87 (87)
T 3s7r_A 81 -VIDPKKA 87 (87)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEeC
Confidence 9999986
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=130.31 Aligned_cols=78 Identities=22% Similarity=0.433 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++++++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|||..|.|+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~A~~~l~g~~~~g~----- 89 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-----G----YSFVRFSTHESAAHAIVSVNGTTIEGH----- 89 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHcCCCEECCc-----
Confidence 37899999999999999999999999999999998762 3 999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
.|+|+|++.+..
T Consensus 90 ~l~v~~a~~~~~ 101 (109)
T 1x4g_A 90 VVKCYWGKESPD 101 (109)
T ss_dssp ECEEECCCCCCS
T ss_pred EEEEEecCCCCC
Confidence 999999988643
No 97
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=8.8e-19 Score=136.98 Aligned_cols=80 Identities=15% Similarity=0.308 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~----~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
++++|||+|||+++++++|+ ++|++||.|++|.+... ++++|||||+|.+.++|+.|++.|||..|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr- 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQGN- 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC-
Confidence 47899999999999999876 69999999999987542 33445999999999999999999999999999
Q ss_pred CCcceEEEEeecCCC
Q 026826 207 RDSVKLRLQFARYPG 221 (232)
Q Consensus 207 ~~~~~L~V~~ak~~~ 221 (232)
+|+|+||+.+.
T Consensus 101 ----~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 ----PLVITFSETPQ 111 (127)
T ss_dssp ----CCEEEECCCCC
T ss_pred ----EEEEEEccCcc
Confidence 99999998763
No 98
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=124.53 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-QGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L-nG~~l~g~~~~~ 209 (232)
++++|||+|||.++++++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.| ||..+.|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-----g----~afV~f~~~~~A~~a~~~l~~~~~~~g~---- 77 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-----Q----CAFIQFATRQAAEVAAEKSFNKLIVNGR---- 77 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHTTTTTCEETTE----
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-----C----EEEEEECCHHHHHHHHHHhcCCeeECCC----
Confidence 47899999999999999999999999999999998753 3 9999999999999999999 99999999
Q ss_pred ceEEEEeec
Q 026826 210 VKLRLQFAR 218 (232)
Q Consensus 210 ~~L~V~~ak 218 (232)
.|+|+|||
T Consensus 78 -~l~v~~ak 85 (85)
T 2ytc_A 78 -RLNVKWGR 85 (85)
T ss_dssp -ECCEEECC
T ss_pred -EEEEEecC
Confidence 99999986
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2e-18 Score=137.83 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|+.||+.|||..|.|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 140 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----- 140 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSS---CTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 368999999999999999999999999999999988752 245556999999999999999999999999999
Q ss_pred eEEEEeecCCCCC
Q 026826 211 KLRLQFARYPGAR 223 (232)
Q Consensus 211 ~L~V~~ak~~~~r 223 (232)
.|+|+|++.+..+
T Consensus 141 ~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 141 ELRVQMARYGRPP 153 (158)
T ss_dssp EEEEEEECCSSCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876443
No 100
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=129.76 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=71.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
++|||+|||.++|+++|+++|++||.|.+|+++.+ ..| ||||+|.+.++|++|++.|||..+.|+ .|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~-----~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPG----FAFVEFEDPRDAEDAVRGLDGKVICGS-----RV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSS----EEEEECSSHHHHHHHHHHHHHSCSSSC-----CC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCC----EEEEEECCHHHHHHHHHHHCCCeECCc-----EE
Confidence 48999999999999999999999999999999877 123 999999999999999999999999999 99
Q ss_pred EEEeecCCCCC
Q 026826 213 RLQFARYPGAR 223 (232)
Q Consensus 213 ~V~~ak~~~~r 223 (232)
+|+|++.+..+
T Consensus 68 ~V~~a~~~~~~ 78 (101)
T 2hvz_A 68 RVELSTGMPRR 78 (101)
T ss_dssp EEEESSSCCCS
T ss_pred EEEEccCCCCc
Confidence 99999886433
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=134.39 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---TEKHRGFAFVEFELAEDAAAAIDNMNESELFGR----- 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT---TCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE-----
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC---CCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 378999999999999999999999999999999988752 244556999999999999999999999999999
Q ss_pred eEEEEee
Q 026826 211 KLRLQFA 217 (232)
Q Consensus 211 ~L~V~~a 217 (232)
.|+|+||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999986
No 102
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-18 Score=123.75 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|| ++++++|+++|++||.|.+|+|... +| ||||+|.+.++|++||+.|||..|.++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~-----~g----~afV~f~~~~~a~~Ai~~l~g~~~~g~----- 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-----RN----CAFVTYEKMESADQAVAELNGTQVESV----- 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT-----TT----EEEEEESSHHHHHHHHHHTTTEEETTE-----
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC-----CC----EEEEEECCHHHHHHHHHHhCCCeECCe-----
Confidence 4789999996 8999999999999999999998532 23 999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCC
Q 026826 211 KLRLQFARYPGARSG 225 (232)
Q Consensus 211 ~L~V~~ak~~~~r~g 225 (232)
.|+|+|++.+..+..
T Consensus 78 ~l~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 78 QLKVNIARKQPMLDS 92 (97)
T ss_dssp EEEEECCSSCCCCCS
T ss_pred EEEEEECCCCCCCCC
Confidence 999999988755543
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=7.7e-19 Score=129.15 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~----~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
++++|||+|||.++++++|+ ++|++||.|.+|+++.. |.++|||||+|.+.++|+.|++.|||..|.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 79 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDK- 79 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc-
Confidence 47899999999999999999 99999999999998742 33345999999999999999999999999999
Q ss_pred CCcceEEEEeecCCC
Q 026826 207 RDSVKLRLQFARYPG 221 (232)
Q Consensus 207 ~~~~~L~V~~ak~~~ 221 (232)
.|+|+|++.+.
T Consensus 80 ----~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 ----PMRIQYAKTDS 90 (97)
T ss_dssp ----ECEEEECSSCC
T ss_pred ----EEEEEEccCCC
Confidence 99999998753
No 104
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=139.71 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG--~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++|||+|||+++|+++|+++|++|| .|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|+|+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~---tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr---- 127 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA---NGQSKGYAEVVVASENSVHKLLELLPGKVLNGE---- 127 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT---TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCe----
Confidence 67999999999999999999999999 999999998853 366778999999999999999999999999999
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
.|+|++++.
T Consensus 128 -~l~V~~a~~ 136 (156)
T 3n9u_C 128 -KVDVRPATR 136 (156)
T ss_dssp -ECEEEECCH
T ss_pred -EeEEEEcCC
Confidence 999999964
No 105
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.8e-18 Score=127.60 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~-~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
++++|||+|||+ ++++++|+++|++||.|.+|+|. +| ||||+|.+.++|+.|++.|||..+.++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~A~~~l~g~~~~g~---- 73 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NA----FGFIQFDNPQSVRDAIECESQEMNFGK---- 73 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TT----EEEEEESCHHHHHHHHHHHTCSSCBTT----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCeeCCc----
Confidence 478999999998 99999999999999999999985 13 999999999999999999999999999
Q ss_pred ceEEEEeecCCC
Q 026826 210 VKLRLQFARYPG 221 (232)
Q Consensus 210 ~~L~V~~ak~~~ 221 (232)
.|+|+|++...
T Consensus 74 -~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 -KLILEVSSSNA 84 (96)
T ss_dssp -TBCEEEEECCC
T ss_pred -EEEEEEcCcCC
Confidence 99999998753
No 106
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=127.26 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~-vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.+.. |+++|||||+|.+.++|++||+. |+..|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~----g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr---- 84 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ----GRSTGEAFVQFASQEIAEKALKK-HKERIGHR---- 84 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS----SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CcchhCCc----
Confidence 4789999999999999999999999999998 88877754 45556999999999999999987 99999999
Q ss_pred ceEEEEeecCCCCCC
Q 026826 210 VKLRLQFARYPGARS 224 (232)
Q Consensus 210 ~~L~V~~ak~~~~r~ 224 (232)
.|+|.++.......
T Consensus 85 -~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 85 -YIEIFKSSRAEVRT 98 (104)
T ss_dssp -CCEEEEECTTTSCC
T ss_pred -EEEEEECCHHHHHH
Confidence 99999997765443
No 107
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-20 Score=141.32 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRF 202 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~--------vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l 202 (232)
++++|||+|||.++++++|+++|++||.|.. |+|+.++. .|.++|||||+|.+.++|++|++.|||..|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---TGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3789999999999999999999999999998 88887742 244556999999999999999999999999
Q ss_pred CCCCCCcceEEEEeecCCCCCC
Q 026826 203 DEHDRDSVKLRLQFARYPGARS 224 (232)
Q Consensus 203 ~g~~~~~~~L~V~~ak~~~~r~ 224 (232)
.++ .|+|+|++.+..+.
T Consensus 83 ~g~-----~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 83 SGN-----PIKVSFATRRADFN 99 (116)
Confidence 999 99999998874443
No 108
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=130.16 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.+ +..|+|+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~----- 94 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---TKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK----- 94 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT---TCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC---CCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE-----
Confidence 478999999999999999999999999999999998752 2445569999999999999999876 5999999
Q ss_pred eEEEEeecCCCCC
Q 026826 211 KLRLQFARYPGAR 223 (232)
Q Consensus 211 ~L~V~~ak~~~~r 223 (232)
.|+|++++.+..+
T Consensus 95 ~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 95 TIDPKVAFPRRAQ 107 (109)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999876443
No 109
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=5.2e-19 Score=139.12 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++|+++|+++|++||.|+.|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~----- 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----- 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS---SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 478999999999999999999999999999999987752 245556999999999999999999999999999
Q ss_pred eEEEEeecCCCCC
Q 026826 211 KLRLQFARYPGAR 223 (232)
Q Consensus 211 ~L~V~~ak~~~~r 223 (232)
.|+|+|++....+
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876433
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=2.2e-18 Score=132.36 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCC---eEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~---i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
..++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++||+ ||+..|.++
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-- 88 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGHR-- 88 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE--
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe--
Confidence 4789999999999999999999999999 89999998764 5667899999999999999998 999999999
Q ss_pred CcceEEEEeecC
Q 026826 208 DSVKLRLQFARY 219 (232)
Q Consensus 208 ~~~~L~V~~ak~ 219 (232)
.|+|.++..
T Consensus 89 ---~i~V~~a~~ 97 (118)
T 2db1_A 89 ---YIEVFKSHR 97 (118)
T ss_dssp ---EEEEEEECH
T ss_pred ---EEEEEECCH
Confidence 999999854
No 111
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=127.81 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|..+ .. .|.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR----- 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EE----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CC----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 47899999999999999999999999987765 21 245667999999999999999999999999999
Q ss_pred eEEEEeecCCCCC
Q 026826 211 KLRLQFARYPGAR 223 (232)
Q Consensus 211 ~L~V~~ak~~~~r 223 (232)
.|+|+|++.+..+
T Consensus 82 ~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 82 SVSLYYTGEKGGT 94 (96)
T ss_dssp EEEEEECSSSCCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999876443
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.8e-18 Score=128.37 Aligned_cols=75 Identities=19% Similarity=0.427 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++++++|+++|++||.|.+|++...+ | ||||+|.+.++|++|++.|||..|.|+ .
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~-----~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-----G----CCFIKYDTHEQAAVCIVALANFPFQGR-----N 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCeECCe-----E
Confidence 6899999999999999999999999999999998332 3 999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|++++
T Consensus 93 l~V~~a~~~ 101 (101)
T 2la4_A 93 LRTGWGKER 101 (101)
T ss_dssp CCCCBCCCC
T ss_pred EEEEeccCC
Confidence 999999863
No 113
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=125.73 Aligned_cols=78 Identities=26% Similarity=0.433 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+++|||+|||.++++++|+++|++||.|. ++++.+. ++|||||+|.+.++|++|++.|||..|.|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG-------PRRRAFLHYPDSAAAQQAVSCLQGLRLGTD----- 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCCSSSS-----
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC-------CCcEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 478999999999999999999999999997 6776542 123999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
.|+|+|++.+.
T Consensus 85 ~l~V~~a~~~~ 95 (97)
T 2e5j_A 85 TLRVALARQQR 95 (97)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 114
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4.8e-18 Score=125.98 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 130 ~~~~tLfV~nLp~-~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
.++++|||+|||. ++++++|+++|++||.|.+|++. +| ||||+|.+.++|++|++.|||..++|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~Ai~~l~g~~~~g~--- 85 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NA----FGFIQFDNPQSVRDAIEXESQEMNFGK--- 85 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SS----EEEEEESSHHHHHHHHHHHTTSEETTE---
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCEECCE---
Confidence 3588999999998 99999999999999999999983 13 999999999999999999999999999
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
.|+|+|++.+
T Consensus 86 --~l~V~~a~~~ 95 (97)
T 2xnq_A 86 --KLILEVSSSN 95 (97)
T ss_dssp --ECEEEECCCC
T ss_pred --EEEEEecCCC
Confidence 9999999875
No 115
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=129.49 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
....++|||+|||.++++++|+++|++|| |.+|+|+.++. ..|+++|||||+|.+.++|++|+ .|||..|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~--- 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR--- 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT--TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC--cCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe---
Confidence 34578999999999999999999999999 99999988751 12455669999999999999999 8999999999
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
.|+|++++.+
T Consensus 89 --~l~V~~a~~~ 98 (100)
T 2j76_E 89 --RIRVDVADQA 98 (100)
T ss_dssp --CCCCEECCCS
T ss_pred --EEEEEeccCC
Confidence 9999999864
No 116
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=129.26 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCC-eEEEEEe-cCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLV-SKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--GYRFDEHD 206 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~-i~~vrl~-~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln--G~~l~g~~ 206 (232)
++++|||+|||.++++++|+++|++||. |.+|+++ .++. .|.++|||||+|.+.++|+.|++.|| +..|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~- 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD---KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH- 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT---TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC---CCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence 3789999999999999999999999998 9999988 4432 24455699999999999999999996 5999999
Q ss_pred CCcceEEEEeecCCC
Q 026826 207 RDSVKLRLQFARYPG 221 (232)
Q Consensus 207 ~~~~~L~V~~ak~~~ 221 (232)
.|+|+|++++.
T Consensus 83 ----~l~V~~a~~~~ 93 (109)
T 2dis_A 83 ----QIAVDWAEPEI 93 (109)
T ss_dssp ----CCEEEESCSSC
T ss_pred ----eEEEEEcCCCC
Confidence 99999998753
No 117
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=131.42 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCCCC
Q 026826 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG--YRFDEHDR 207 (232)
Q Consensus 131 ~~~tLfV~nLp~~-~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG--~~l~g~~~ 207 (232)
++++|||+|||++ +++++|+++|++||.|++|+|+..+ | ||||+|.+.++|+.|++.||+ ..|.|+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr-- 92 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-----S----QAFIEMETREDAMAMVDHCLKKALWFQGR-- 92 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHHHSCCCSSSS--
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCE--
Confidence 3789999999998 9999999999999999999997542 3 999999999999999998864 568999
Q ss_pred CcceEEEEeecCC
Q 026826 208 DSVKLRLQFARYP 220 (232)
Q Consensus 208 ~~~~L~V~~ak~~ 220 (232)
+|+|+||+..
T Consensus 93 ---~l~V~~a~~~ 102 (112)
T 1x4f_A 93 ---CVKVDLSEKY 102 (112)
T ss_dssp ---CCEEEEECSC
T ss_pred ---EEEEEECccc
Confidence 9999999865
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=6.1e-18 Score=128.03 Aligned_cols=77 Identities=32% Similarity=0.665 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
++++|||+|||.++++++|+++|++||.|++|+++ +| ||||+|.+.++|++|++.|||..|.|+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg----~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NG----FAFVEFEEAESAAKAIEEVHGKSFANQ----- 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TT----EEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CC----EEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 47899999999999999999999999999999998 13 999999999999999999999999999
Q ss_pred eEEEEeecCCCCC
Q 026826 211 KLRLQFARYPGAR 223 (232)
Q Consensus 211 ~L~V~~ak~~~~r 223 (232)
.|+|+|++.+..|
T Consensus 94 ~l~V~~a~~~~~r 106 (108)
T 2jvo_A 94 PLEVVYSKLPAKR 106 (108)
T ss_dssp ECEEESCSCCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999999886543
No 119
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.5e-18 Score=121.92 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=68.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
+|||+|||+++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++ |||..|+|+ .|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~-----~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT---TNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-----MVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS---STTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC-----CCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE-----EEE
Confidence 599999999999999999999999999999988752 24556799999999999999997 999999999 999
Q ss_pred EEee
Q 026826 214 LQFA 217 (232)
Q Consensus 214 V~~a 217 (232)
|++|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9986
No 120
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=128.92 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++. |.++|||||+|.+.++|++||+ +||..|+|+ .
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr-----~ 80 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET-----D 80 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT-----T
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEECCE-----E
Confidence 67999999999999999999999999999999998764 4455699999999999999998 999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|.+++.
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99998753
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=3.1e-18 Score=130.93 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG-~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
..++|||+|||+++++++|+++|++|| .|..++|..++ ++|||||+|.+.++|++||+.|||..|+|+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~-------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr---- 95 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD-------FDGTGALEFPSEEILVEALERLNNIEFRGS---- 95 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS-------SSCCEEEEESSHHHHHHHHHHTTTEEETTE----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC-------CCCEEEEEECCHHHHHHHHHHcCCCEECCe----
Confidence 478999999999999999999999999 89999886432 224999999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.|+|++++.+
T Consensus 96 -~i~V~~a~~~ 105 (111)
T 2jvr_A 96 -VITVERDDNP 105 (111)
T ss_dssp -EEEEEESCC-
T ss_pred -EEEEEECCCC
Confidence 9999999865
No 122
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=129.28 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++++++|+++|++||.|..|+|+..+ | ||||+|.+.++|+.|++.|||+.|.++ .
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~-----~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-----I----TAIVEFLEPLEARKAFRHLAYSKFHHV-----P 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-----S----CEEEEESCHHHHHHHHHHHTTCBSSSS-----B
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEeCCHHHHHHHHHHhCCCEECCe-----E
Confidence 5799999999999999999999999999999987532 3 999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|++..
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999999764
No 123
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=134.50 Aligned_cols=84 Identities=21% Similarity=0.416 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE--------EEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV--------RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR 201 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~v--------rl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~ 201 (232)
.++++|||+|||+++|+++|+++|++||.|..| ++... |.++|||||+|.+.++|++|++.|||+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~------g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE------GRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE------TTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC------CCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 347899999999999999999999999998763 33321 4556799999999999999999999999
Q ss_pred eCCCCCCcceEEEEeecCCCCCC
Q 026826 202 FDEHDRDSVKLRLQFARYPGARS 224 (232)
Q Consensus 202 l~g~~~~~~~L~V~~ak~~~~r~ 224 (232)
|.|+ .|+|+||+....+.
T Consensus 117 ~~g~-----~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 117 LFGK-----PMVVQFARSARPKQ 134 (143)
T ss_dssp ETTE-----ECEEEECCCSCC--
T ss_pred eCCc-----EEEEEECCCCCCcc
Confidence 9999 99999998765444
No 124
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=132.28 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
....++|||+|||+++|+++|+++|++||.|.++.++.+.. .|+++|||||+|.+.++|++||+ |||..|+++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~---~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr--- 94 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP---NGKATGEGFVEFRNEADYKAALC-RHKQYMGNR--- 94 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT---TSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC---CCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc---
Confidence 34478999999999999999999999999998855554432 36677899999999999999999 999999999
Q ss_pred cceEEEEeecC
Q 026826 209 SVKLRLQFARY 219 (232)
Q Consensus 209 ~~~L~V~~ak~ 219 (232)
.|+|.++..
T Consensus 95 --~i~V~~a~~ 103 (124)
T 1wel_A 95 --FIQVHPITK 103 (124)
T ss_dssp --CBEEEEECH
T ss_pred --EEEEEECCH
Confidence 999999864
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=121.40 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=69.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++.++ ..++|+ .|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~-----~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---TKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK-----TI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC---SSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC-----CC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC---CCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE-----EE
Confidence 4799999999999999999999999999999988752 24555699999999999999999999 999999 99
Q ss_pred EEEee
Q 026826 213 RLQFA 217 (232)
Q Consensus 213 ~V~~a 217 (232)
+|++|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 126
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=128.39 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i-~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
+.++|||+|||+++|+++|+++|++||.| ..|+|+.++. |+++|||||+|.+.++|++||+. |+..|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr---- 84 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN----GQGLGQALVQFKNEDDARKSERL-HRKKLNGR---- 84 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT----SSCSSCEEEECSSHHHHHHHGGG-CSEEETTE----
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CCCccCCe----
Confidence 47899999999999999999999999999 8899998764 44556999999999999999976 99999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.|+|+++...
T Consensus 85 -~i~v~~a~~~ 94 (114)
T 2cpy_A 85 -EAFVHVVTLE 94 (114)
T ss_dssp -EEEEEEECHH
T ss_pred -EEEEEECCHH
Confidence 9999999643
No 127
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=8.3e-19 Score=127.43 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.+ |++|++.|||..+.|+ .|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-----~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE---TKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-----TI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS---SCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-----SC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC---CCCcceEEEEEECCHH-HHHHHHHhCCCEECCe-----EE
Confidence 5899999999999999999999999999999988753 2456679999999999 9999999999999999 99
Q ss_pred EEEeecCC
Q 026826 213 RLQFARYP 220 (232)
Q Consensus 213 ~V~~ak~~ 220 (232)
+|++|..+
T Consensus 73 ~V~~a~~~ 80 (90)
T 2ki2_A 73 RVTEANPK 80 (90)
T ss_dssp SEEEC---
T ss_pred EEEEcCCC
Confidence 99999875
No 128
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=6.3e-18 Score=129.11 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++++++|+++|++||.|++|+|+.+ | ||||+|.+.++|++||+.|||+.|+++.....
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------S----EEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------C----EEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3689999999999999999999999999999999866 3 99999999999999999999999999832222
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|+.++.+
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 3888887654
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=6.7e-18 Score=123.93 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+.-|||+||++.+||++|+++|.+||+|++++++.. +| ||||+|.++++|++|++.||+.++.++ +
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-----kG----faFVey~~~~eA~~Ai~~Ln~~~l~gr-----~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-----QG----IALCKYTTREEANKAQMALNNCVLANT-----T 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-----TT----EEEEEESSHHHHHHHHHHHTTEEETTE-----E
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-----Cc----EEEEEECCHHHHHHHHHHhcCCEECCc-----E
Confidence 668999999999999999999999999999999763 23 999999999999999999999999999 9
Q ss_pred EEEEeec
Q 026826 212 LRLQFAR 218 (232)
Q Consensus 212 L~V~~ak 218 (232)
|+|++|.
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999983
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.1e-17 Score=140.11 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 127 ~p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
.|..+++||||+|||+++||++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|++||+.||+..+.++
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~- 85 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI---TRRSLGYAYVNFQQPADAERALDTMNFDVIKGK- 85 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC---CCCccccccceeCCHHHHHHHHHHhhhhhcCCc-
Confidence 3344578999999999999999999999999999999998753 256678999999999999999999999999999
Q ss_pred CCcceEEEEeecCC
Q 026826 207 RDSVKLRLQFARYP 220 (232)
Q Consensus 207 ~~~~~L~V~~ak~~ 220 (232)
.|+|.++...
T Consensus 86 ----~i~~~~~~~~ 95 (213)
T 4f02_A 86 ----PVRIMWSQRD 95 (213)
T ss_dssp ----ECEEEECCCC
T ss_pred ----cccccccccc
Confidence 9999998754
No 131
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.4e-17 Score=128.49 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=66.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--CCCCc
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQGYRFDE--HDRDS 209 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~-aFVeF~~~~~A~~Ai~~LnG~~l~g--~~~~~ 209 (232)
-.|||+||++.+|+++|+++|++||.|++|+|+.+ . | | |||+|.+.++|+.|++.|||..|.+ +
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~-G----f~aFVef~~~~~A~~A~~~LnG~~i~g~~~---- 92 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----N-G----IQAMVEFESVLCAQKAKAALNGADIYAGCC---- 92 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----S-S----EEEEEEESSHHHHHHHHHHHTTCCCBTTBS----
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-C----CEEEEEECCHHHHHHHHHHhCCCEecCCCe----
Confidence 34689999999999999999999999999998653 1 3 7 9999999999999999999999987 5
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.|+|+||+.+
T Consensus 93 -~l~V~~Ak~~ 102 (124)
T 2e5i_A 93 -TLKIEYARPT 102 (124)
T ss_dssp -EEEEECCSCS
T ss_pred -EEEEEEecCC
Confidence 8999999876
No 132
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=6.4e-18 Score=133.61 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCC---eEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~---i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..|+++
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-- 115 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMGHR-- 115 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE--
Confidence 3679999999999999999999999999 88999998864 5677899999999999999998 999999999
Q ss_pred CcceEEEEeecC
Q 026826 208 DSVKLRLQFARY 219 (232)
Q Consensus 208 ~~~~L~V~~ak~ 219 (232)
.|+|.++..
T Consensus 116 ---~i~V~~a~~ 124 (136)
T 2hgl_A 116 ---YIEVFKSHR 124 (136)
T ss_dssp ---EEEEEECCH
T ss_pred ---EEEEEECCh
Confidence 999999854
No 133
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=1.6e-17 Score=154.22 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
++.++|||+|||++||+++|.++|++||.|+.|.|+.++. .|+++|||||+|.+.++|++||+.|||..|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr---- 172 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR---SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR---- 172 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC---CCCccceEEEeeccHHHHHHHHHHcCCCEECCE----
Confidence 3478999999999999999999999999999999998752 245567999999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.|.|+|++..
T Consensus 173 -~i~V~~a~~~ 182 (437)
T 3pgw_S 173 -RVLVDVERGR 182 (437)
T ss_pred -EEEEEEeCCC
Confidence 9999999864
No 134
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=125.55 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCC------CHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 026826 131 ASSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE 204 (232)
Q Consensus 131 ~~~tLfV~nLp~~~------te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g 204 (232)
.+++|||+|||+.+ |+++|+++|++||.|.+|+|+. .. |.++|||||+|.+.++|++|++.|||..|+|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~----g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-ED----GKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BT----TBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CC----CCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 46899999999999 7899999999999999999883 22 4556699999999999999999999999999
Q ss_pred CCCCcceEEEEeecCC
Q 026826 205 HDRDSVKLRLQFARYP 220 (232)
Q Consensus 205 ~~~~~~~L~V~~ak~~ 220 (232)
++ .|+|+++...
T Consensus 89 ~~----~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QH----TFRVNLFTDF 100 (105)
T ss_dssp TC----EEEEECSCCC
T ss_pred Cc----eEEEEEcchH
Confidence 62 7999998753
No 135
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=5.4e-18 Score=144.66 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG--~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++|||+||++++|+++|+++|++|| .|++|+|+.++. .|+++|||||+|.+.++|++||+.|||+.|+++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~---tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr---- 140 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ---- 140 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT---TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB----
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCeECCE----
Confidence 67999999999999999999999999 999999998853 366778999999999999999999999999999
Q ss_pred ceEEEEeec
Q 026826 210 VKLRLQFAR 218 (232)
Q Consensus 210 ~~L~V~~ak 218 (232)
.|+|+|++
T Consensus 141 -~l~V~~a~ 148 (229)
T 3q2s_C 141 -NPVVTPVN 148 (229)
T ss_dssp -CCEEEECC
T ss_pred -EeEEEECC
Confidence 99999975
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-18 Score=128.68 Aligned_cols=84 Identities=18% Similarity=0.255 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++|+++|+++|++||.|.. .++.+.. .|.++|||||+|.+.++|++||+ |||..|.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~---~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~----- 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR---TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN----- 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE---EETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCC---CCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc-----
Confidence 4789999999999999999999999999887 4444321 13444599999999999999998 999999999
Q ss_pred eEEEEeecCCCCCC
Q 026826 211 KLRLQFARYPGARS 224 (232)
Q Consensus 211 ~L~V~~ak~~~~r~ 224 (232)
.|+|++++.+..+.
T Consensus 86 ~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 86 EIKLEKPKGRDGTR 99 (101)
T ss_dssp CCEEECCSCCCCSS
T ss_pred EEEEEEcCCCCCCC
Confidence 99999998865443
No 137
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=121.15 Aligned_cols=78 Identities=13% Similarity=0.284 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEE-EecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vr-l~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.+++|||+|||+++++++|+++|++||.|.+|+ |+.++. .| .|||+|.+.++|+.|++.|||..|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~---- 82 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TA----VVNVTYSSKDQARQALDKLNGFQLENF---- 82 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SE----EEEEEESSHHHHHHHHHHHTTCBCSSC----
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CC----EEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 468999999999999999999999999999995 766642 12 599999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.|+|+|++.+
T Consensus 83 -~l~V~~a~~~ 92 (96)
T 2e44_A 83 -TLKVAYIPDE 92 (96)
T ss_dssp -BCEEEECCCC
T ss_pred -EEEEEEcCcc
Confidence 9999999876
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.7e-17 Score=130.55 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++|+++|+++|++||.|.+|+|+.+. +| ||||+|.+.++|+.|++.|||..|.|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g----~afV~f~~~~~a~~A~~~l~g~~~~g~----- 138 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP----PG----FAFVEFEDPRDAADAVRELDGRTLCGC----- 138 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS----CS----EEEEEESSHHHHHHHHHHHSSSCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC----Cc----EEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 47899999999999999999999999999999998762 23 999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
+|+|+|++++
T Consensus 139 ~l~v~~a~~~ 148 (150)
T 2i2y_A 139 RVRVELSNGE 148 (150)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999999875
No 139
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=1.9e-17 Score=134.72 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--CCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE--HDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g--~~~~ 208 (232)
...+|||+||++.+|+++|+++|++||.|++|+|..++ .+ |||||+|.+.++|++|++.|||..|.+ +
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~r----gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~--- 114 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQ----FQALLQYADPVSAQHAKLSLDGQNIYNACC--- 114 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SC----EEEEEEESCHHHHHHHHHHSTTBCSSSSCS---
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CC----CEEEEEECCHHHHHHHHHHhCCCEecCCCc---
Confidence 35679999999999999999999999999999987543 12 499999999999999999999999976 7
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
.|+|+|++.+
T Consensus 115 --~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 --TLRIDFSKLT 124 (164)
T ss_dssp --CEEEEECSSS
T ss_pred --EEEEEEecCC
Confidence 8999999876
No 140
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=2.5e-17 Score=135.31 Aligned_cols=84 Identities=23% Similarity=0.295 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 128 p~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
.+.++++|||+|||.++++++|+++|++||.|++|.|+.++. |.++|||||+|.+.++|++|++.|||..|+++
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr-- 157 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDGR-- 157 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT----SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE--
Confidence 344578999999999999999999999999999999998763 44556999999999999999999999999999
Q ss_pred CcceEEEEeecCC
Q 026826 208 DSVKLRLQFARYP 220 (232)
Q Consensus 208 ~~~~L~V~~ak~~ 220 (232)
.|+|+||...
T Consensus 158 ---~l~V~~a~~~ 167 (177)
T 2f3j_A 158 ---PMDIQLVASQ 167 (177)
T ss_dssp ---BCEEEEESSG
T ss_pred ---EEEEEEecCC
Confidence 9999999754
No 141
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=3.3e-17 Score=128.64 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--CCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQGYRFDE--HDRD 208 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~-aFVeF~~~~~A~~Ai~~LnG~~l~g--~~~~ 208 (232)
--.|||+||++.+|+++|+++|++||.|.+|+++.+. + || |||+|.+.++|++|++.|||..|.+ +
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~----gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~--- 96 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----N----QFQALLQYADPVSAQHAKLSLDGQNIYNACC--- 96 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----T----EEEEEEEESCHHHHHHHHHHHTTCEEETTEE---
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----C----CcEEEEEECCHHHHHHHHHHcCCCeecCCCc---
Confidence 3467899999999999999999999999999987643 1 37 9999999999999999999999998 6
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
.|+|+||+..
T Consensus 97 --~LrI~~ak~~ 106 (130)
T 3zzy_A 97 --TLRIDFSKLT 106 (130)
T ss_dssp --EEEEEECSCS
T ss_pred --EEEEEecCCC
Confidence 8999999875
No 142
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=126.99 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=67.9
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----C
Q 026826 131 ASSTLFV--EGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRF-----D 203 (232)
Q Consensus 131 ~~~tLfV--~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l-----~ 203 (232)
++++||| +||++++++++|+++|++||.|.+|.|+.++ | ||||+|.+.++|++|++.|||..| .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-----g----faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-----S----CEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4789999 7799999999999999999999999887532 3 999999999999999999999998 4
Q ss_pred CCCCCcceEEEEeecCC
Q 026826 204 EHDRDSVKLRLQFARYP 220 (232)
Q Consensus 204 g~~~~~~~L~V~~ak~~ 220 (232)
+. +|.|.|++..
T Consensus 95 g~-----~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KI-----TLYLNFVEKV 106 (114)
T ss_dssp EE-----ECEEEEESCC
T ss_pred Cc-----EEEEEecccC
Confidence 55 8999999764
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4.3e-18 Score=135.08 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||+++|+++|+++|++|| |++|+|+.++. |+++|||||+|.+.++|++|| .+|+..|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR----- 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQHR----- 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE-----
Confidence 467999999999999999999999999 77999998864 455669999999999999999 7999999999
Q ss_pred eEEEEeecCCCC
Q 026826 211 KLRLQFARYPGA 222 (232)
Q Consensus 211 ~L~V~~ak~~~~ 222 (232)
.|+|..+..+..
T Consensus 114 ~i~V~~a~~~~~ 125 (139)
T 2hgn_A 114 YIELFLNSTTGA 125 (139)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9.2e-17 Score=127.01 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+.++|||+|||.++++++|+++|++||.|.+++++.+.. .|.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ---TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR----- 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-----
Confidence 478999999999999999999999999999999998752 356678999999999999999999999999999
Q ss_pred eEEEEeecC
Q 026826 211 KLRLQFARY 219 (232)
Q Consensus 211 ~L~V~~ak~ 219 (232)
.|+|+||+.
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 999999863
No 145
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=123.61 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++. |+++|||||+|.+.++|++|| .||+..|+++ .
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr-----~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR-----Y 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----CCCCSEEEEECSSHHHHHHHH-HTTTEEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----CCCCeEEEEEECCHHHHHHHH-hcCCCeECCe-----E
Confidence 5799999999999999999999999 899999998764 445569999999999999999 7999999999 9
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|+|..+..
T Consensus 85 i~V~~a~~ 92 (109)
T 2dnn_A 85 VEVSPATE 92 (109)
T ss_dssp EEEEECCH
T ss_pred EEEEECCc
Confidence 99988754
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.4e-17 Score=117.76 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||+++++++|+++|++||.|.+| +.++. .|. ||||+|.+.++|++|++ |||..|+|+ .
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~---~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~-----~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD---KGV---FAIVEMGDVGAREAVLS-QSQHSLGGH-----R 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS---SCC---EEEEEESSHHHHHHHHT-CSCCEETTE-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC---CCc---EEEEEECCHHHHHHHHh-cCCeEECCE-----E
Confidence 6799999999999999999999999999987 33321 122 99999999999999999 999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+++..+.
T Consensus 74 l~V~~a~~~~ 83 (94)
T 2e5g_A 74 LRVRPREQKE 83 (94)
T ss_dssp CCCBCSCCSC
T ss_pred EEEEECCcCC
Confidence 9999997653
No 147
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=125.10 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCC---eEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~---i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
...++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++||+ ||+..|.++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr- 82 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----GKRRGDALIEMESEQDVQKALE-KHRMYMGQR- 82 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS-
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe-
Confidence 34789999999999999999999999988 89999988764 4455699999999999999998 999999999
Q ss_pred CCcceEEEEeecC
Q 026826 207 RDSVKLRLQFARY 219 (232)
Q Consensus 207 ~~~~~L~V~~ak~ 219 (232)
.|+|.++..
T Consensus 83 ----~i~V~~a~~ 91 (107)
T 2lmi_A 83 ----YVEVYEINN 91 (107)
T ss_dssp ----CCCCEECCH
T ss_pred ----EEEEEECCH
Confidence 999999864
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=9.1e-17 Score=127.17 Aligned_cols=81 Identities=25% Similarity=0.508 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|+.|++.|||..+.++ .
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-----~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI---TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----T 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCcceeEEEEEECCHHHHHHHHHHcCCCccCCc-----e
Confidence 67999999999999999999999999999999998762 256677999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+++++.
T Consensus 74 l~v~~~~~~ 82 (167)
T 1fxl_A 74 IKVSYARPS 82 (167)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999865
No 149
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.3e-17 Score=123.98 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+++|||+|||.++++++|+++|++||.|.+|+|+.++. |.++|||||+|.+.++|++|++ ++..|.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~----- 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----GVSKGYGFVSFYNDVDVQKIVE--SQINFHGK----- 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSCCCHHHHTT--CCCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHh--CCCeECCE-----
Confidence 368999999999999999999999999999999998853 5667899999999999999998 99999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|.|.++...
T Consensus 77 ~l~v~~a~~~ 86 (102)
T 2xs2_A 77 KLKLGPAIRK 86 (102)
T ss_dssp ECEEEEEEEC
T ss_pred EEEEEECCcC
Confidence 9999998754
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=1e-16 Score=116.32 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||+++++++|+++|++| .|.+|++.. ++|||||+|.+.++|++|++.|||..+.|+ .
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-----~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR---------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGK-----D 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG---------GGTEEEECCSCHHHHHHHHHHHTTEEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC---------CCcEEEEEECCHHHHHHHHHHhCCCeECCc-----E
Confidence 6799999999999999999999999 999999851 123999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|+...
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999764
No 151
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=8.2e-18 Score=117.94 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEE
Q 026826 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLR 213 (232)
Q Consensus 134 tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~ 213 (232)
+|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++ +++..+.|+ .|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~-----~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK---TNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS-----KCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC---CSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB-----CCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE-----EEE
Confidence 599999999999999999999999999999987752 24555699999999999999997 599999999 899
Q ss_pred EEee
Q 026826 214 LQFA 217 (232)
Q Consensus 214 V~~a 217 (232)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=1e-16 Score=130.80 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
...++|||+|||.++++++|+++|++||.|.+|+++.+.. .|.++|||||+|.+.++|++|++.|||..|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 184 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA---TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK---- 184 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT---TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC---CCCcceEEEEEECCHHHHHHHHHHcCCCEECCE----
Confidence 4578999999999999999999999999999999998752 256677999999999999999999999999999
Q ss_pred ceEEEEeecCCCCC
Q 026826 210 VKLRLQFARYPGAR 223 (232)
Q Consensus 210 ~~L~V~~ak~~~~r 223 (232)
.|+|+|++++..+
T Consensus 185 -~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 185 -KLLVQRASVGAKN 197 (198)
T ss_dssp -ECEEEESCCCCCC
T ss_pred -EEEEEECCCCCCC
Confidence 9999999886543
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=7.6e-17 Score=128.13 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|+.|++.|||..+.++ .
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-----~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK---TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK-----R 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT---TTEECSEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC---CCccceEEEEEECCHHHHHHHHHhcCCCEeCCc-----E
Confidence 68999999999999999999999999999999988752 245556999999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+|++...
T Consensus 75 l~v~~~~~~~ 84 (168)
T 1b7f_A 75 LKVSYARPGG 84 (168)
T ss_dssp CEEEECCCCS
T ss_pred EEEEecCCCc
Confidence 9999998653
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.5e-16 Score=131.56 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|+.|+|+.+.. .|.++|||||+|.+.++|.+|++.|||..|+|+ .
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-----~ 196 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT---TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ-----Y 196 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS-----B
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC---CCCcCceEEEEecCHHHHHHHHHHccCCEeCCc-----E
Confidence 67999999999999999999999999999999998753 356677999999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+|++.+.
T Consensus 197 i~V~~a~~~~ 206 (216)
T 2qfj_A 197 LRVGKAVTPP 206 (216)
T ss_dssp CEEEECSSCS
T ss_pred EEEEEecCCC
Confidence 9999998863
No 155
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=117.83 Aligned_cols=69 Identities=25% Similarity=0.449 Sum_probs=61.8
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~------te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
+++|||+|||..+ ++++|+++|++||.|.+|+++.. . |+++|||||+|.+.++|++|++.|||..|+|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-D----GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB-T----TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC-C----CcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3699999999999 78999999999999999998732 2 45556999999999999999999999999997
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.5e-16 Score=129.68 Aligned_cols=84 Identities=13% Similarity=0.221 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++|+++|+++|++||.|..|+|+.+.. .|.++|||||+|.+.++|++|++. +|..|+|+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~----- 173 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG---SGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH----- 173 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE-----
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC---CCCccceEEEEECCHHHHHHHHHh-CCcEECCE-----
Confidence 368999999999999999999999999999999998752 256678999999999999999976 89999999
Q ss_pred eEEEEeecCCCCC
Q 026826 211 KLRLQFARYPGAR 223 (232)
Q Consensus 211 ~L~V~~ak~~~~r 223 (232)
.|.|.|+.++...
T Consensus 174 ~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 174 NCEVRKALSKQEM 186 (196)
T ss_dssp ECEEEECC-----
T ss_pred EEEEEecCChhHh
Confidence 9999999877433
No 157
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.9e-17 Score=116.97 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY--RFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~--~l~g~~~~ 208 (232)
++++|||+|||.++++++|+++|++||.|.+|+|+.+. + |||||+|.+.++|++| ++. .+.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~----~----g~afV~f~~~~~a~~~----~~~~~~~~g~--- 68 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF----R----AFAFVTFADDQIAQSL----CGEDLIIKGI--- 68 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSC----C----SCCEEECSCHHHHHHT----TTCEEEETTE---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCC----C----CEEEEEECCHHHHHHH----hcCCceeCCE---
Confidence 37899999999999999999999999999999998651 2 3999999999999754 444 44777
Q ss_pred cceEEEEeecCCCCCC
Q 026826 209 SVKLRLQFARYPGARS 224 (232)
Q Consensus 209 ~~~L~V~~ak~~~~r~ 224 (232)
.|+|++++++..+.
T Consensus 69 --~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 69 --SVHISNAEPKHNSN 82 (88)
T ss_dssp --EEEEECCCCCCCCC
T ss_pred --EEEEEecCCCCCCC
Confidence 99999998875444
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=2.1e-16 Score=126.26 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=72.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|..|+++.++. .|.++|||||+|.+.++|++|++.|||..|+|+ .
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-----~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA---TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK-----K 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT---TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe-----E
Confidence 67999999999999999999999999999999998752 256678999999999999999999999999999 9
Q ss_pred EEEEee
Q 026826 212 LRLQFA 217 (232)
Q Consensus 212 L~V~~a 217 (232)
|+|+||
T Consensus 166 l~V~~A 171 (172)
T 2g4b_A 166 LLVQRA 171 (172)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.8e-16 Score=125.28 Aligned_cols=80 Identities=14% Similarity=0.289 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
++|||+|||.++|+++|+++|++||.|.+|+++.++. ++++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-----~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIENN-----IV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETTE-----EC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC-----ee
Confidence 4899999999999999999999999999999998864 44567999999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 026826 213 RLQFARYPG 221 (232)
Q Consensus 213 ~V~~ak~~~ 221 (232)
+|+++....
T Consensus 72 ~v~~~~~~~ 80 (166)
T 3md3_A 72 KINWAFQSQ 80 (166)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999997653
No 160
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.8e-16 Score=132.77 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=70.6
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLP-SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp-~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+++|||+||| +++++++|+++|++||.|.+|+|+.++ +| ||||+|.+.++|+.||+.|||..|.|+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~lng~~~~g~----- 70 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PG----AAMVEMADGYAVDRAITHLNNNFMFGQ----- 70 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TT----CEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 7899999999 899999999999999999999998753 23 999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|.|++..
T Consensus 71 ~l~v~~s~~~ 80 (205)
T 3tyt_A 71 KMNVCVSKQP 80 (205)
T ss_dssp ECEEEECSCS
T ss_pred eEEEEEccCC
Confidence 9999999754
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=127.04 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCe----EEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i----~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
...+|||+|||+++|+++|+++|++||.| ..|+|+.++. |+++|||||+|.+.++|++||+. |+..|.++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR- 95 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----GRPTGDAFVLFACEEYAQNALRK-HKDLLGKR- 95 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----SCEEEEEEECCSSHHHHHHHHTT-TTEESSSC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe-
Confidence 36799999999999999999999999875 6899988753 66778999999999999999985 99999999
Q ss_pred CCcceEEEEeecC
Q 026826 207 RDSVKLRLQFARY 219 (232)
Q Consensus 207 ~~~~~L~V~~ak~ 219 (232)
.|+|..+..
T Consensus 96 ----~i~V~~a~~ 104 (123)
T 2dha_A 96 ----YIELFRSTA 104 (123)
T ss_dssp ----EECCEEECH
T ss_pred ----EEEEEECCH
Confidence 899988753
No 162
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=117.41 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=64.0
Q ss_pred CcE-EEEcCCCCCCCHHH----HHHHhcCC-CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SST-LFVEGLPSDCSRRE----VAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~t-LfV~nLp~~~te~~----L~~lF~~f-G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
+.| |||+|||+++++++ |+++|++| |.|.+|. +| ||||+|.+.++|++|++.|||..|.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG----~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GC----SAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TT----CEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cC----EEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 566 99999999999988 55899999 5999881 23 999999999999999999999999999
Q ss_pred CCCcceEEEEeecCC
Q 026826 206 DRDSVKLRLQFARYP 220 (232)
Q Consensus 206 ~~~~~~L~V~~ak~~ 220 (232)
+|+|+||+..
T Consensus 75 -----~i~v~~A~~~ 84 (96)
T 2diu_A 75 -----RIIVSFTPKN 84 (96)
T ss_dssp -----CCEEESSCCS
T ss_pred -----eEEEEecCCC
Confidence 9999999875
No 163
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.4e-16 Score=121.73 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 130 ~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.++++|||+|| ++++++|+++|++||.|.+|+|... +| ||||+|.+.++|++|++.|||..|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~-----kg----~aFV~f~~~~~A~~Ai~~lng~~~~g~---- 101 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-----RN----CAFVTYEKMESADQAVAELNGTQVESV---- 101 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT-----TT----EEEEECSSHHHHHHHHHHHTTCBCSSC----
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC-----CC----EEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 34789999996 6999999999999999999998632 23 999999999999999999999999999
Q ss_pred ceEEEEeecCCCC
Q 026826 210 VKLRLQFARYPGA 222 (232)
Q Consensus 210 ~~L~V~~ak~~~~ 222 (232)
.|+|+|++.+..
T Consensus 102 -~l~V~~a~~~~~ 113 (121)
T 2bz2_A 102 -QLKVNIARKQPM 113 (121)
T ss_dssp -BCEEEECCSSCC
T ss_pred -EEEEEEeCCCCC
Confidence 999999987643
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=121.01 Aligned_cols=65 Identities=28% Similarity=0.343 Sum_probs=57.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L 197 (232)
+++|||+|||+++|+++|+++|++||.|. +.++.+......|+++|||||+|.+.++|++||+.|
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 68999999999999999999999999999 888776532222566679999999999999999998
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=2.5e-16 Score=128.35 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
+..+++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++||+. ++..|.|+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~--- 82 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---TKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR--- 82 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC---CCCccceEEEEeCCHHHHHHHHhc-CCCEECCE---
Confidence 34578999999999999999999999999999999998753 356678999999999999999965 99999999
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
.|.|.++...
T Consensus 83 --~l~v~~~~~~ 92 (196)
T 1l3k_A 83 --VVEPKRAVSR 92 (196)
T ss_dssp --ECEEEECCC-
T ss_pred --EeeeecccCc
Confidence 9999998765
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=114.22 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD--EHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~--g~~~~ 208 (232)
+.++|||+|||+++|+++|+++|++||.|++|+|+.+ ++ |||||+|.+.++|+ .|++..+. ++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----sr----GfaFV~F~~~~~A~----~~~~~~~~~~g~--- 74 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FR----AFAFVTFADDKVAQ----SLCGEDLIIKGI--- 74 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CC----SEEEEEESCHHHHH----HHTTCEEEETTE---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CC----CEEEEEECCHHHHH----HHcCCCcccCCE---
Confidence 4789999999999999999999999999999999874 12 39999999999988 35676654 66
Q ss_pred cceEEEEeecCCC
Q 026826 209 SVKLRLQFARYPG 221 (232)
Q Consensus 209 ~~~L~V~~ak~~~ 221 (232)
.|.|.+|+++.
T Consensus 75 --~v~v~~a~~k~ 85 (89)
T 3d2w_A 75 --SVHISNAEPKH 85 (89)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEEcCCCC
Confidence 89999998753
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=3.2e-16 Score=125.09 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++|+++|+++|++||.|.+|+++.+.. |.++|||||+|.+.++|.+|++.|||..+.+. +..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~~ 167 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG--CSS 167 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT--CSS
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCC--CCC
Confidence 367999999999999999999999999999999998754 56677999999999999999999999988751 112
Q ss_pred eEEEEeec
Q 026826 211 KLRLQFAR 218 (232)
Q Consensus 211 ~L~V~~ak 218 (232)
+|+|+||.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 99999983
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=1.7e-16 Score=132.75 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||+++|+++|+++|++||.|++|+|+.++. .++|||||+|.+.++|++||+.|||..|+|+ .
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-----~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~-----~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-----GSKGYGFVHFETQEAAERAIEKMNGMLLNDR-----K 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-----EEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-----CCceEEEEEeCCHHHHHHHHHHhCCCEECCE-----E
Confidence 56999999999999999999999999999999998753 2456999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+|++++
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999999764
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=8.1e-16 Score=122.14 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--CCCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE--HDRDS 209 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g--~~~~~ 209 (232)
.++|||+|||.++++++|+++|++||.|..++++.++. .|.++|||||+|.+.++|.+|++.|||..+.| +
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~---- 161 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL---TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ---- 161 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS----
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC---CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe----
Confidence 67999999999999999999999999999999988752 25566799999999999999999999999988 6
Q ss_pred ceEEEEee
Q 026826 210 VKLRLQFA 217 (232)
Q Consensus 210 ~~L~V~~a 217 (232)
+|+|+||
T Consensus 162 -~l~V~~A 168 (168)
T 1b7f_A 162 -PLSVRLA 168 (168)
T ss_dssp -CCEEEEC
T ss_pred -EEEEEeC
Confidence 8999986
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=1.9e-16 Score=113.79 Aligned_cols=71 Identities=20% Similarity=0.387 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCC----C-------CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~f----G-------~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG 199 (232)
+.++|||+|||.++++++|+++|++| | .|.++++..++ | ||||+|.+.++|++|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-----g----~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-----S----EEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-----c----EEEEEcCCHHHHHHHH-hcCC
Confidence 37899999999999999999999999 8 89999987652 3 9999999999999999 9999
Q ss_pred ceeCCCCCCcceEEEEe
Q 026826 200 YRFDEHDRDSVKLRLQF 216 (232)
Q Consensus 200 ~~l~g~~~~~~~L~V~~ 216 (232)
..|.|+ .|+|+.
T Consensus 75 ~~~~g~-----~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQ-----SLKIRR 86 (87)
T ss_dssp CEETTE-----ECEEEC
T ss_pred CEECCe-----EEEEeC
Confidence 999999 999974
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.1e-16 Score=123.37 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeE--EEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~--~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
..++|||+|||+++|+++|+++|++| .|+ +|+|+.++. |+++|||||+|.+.++|++||+ +++..|+++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR--- 111 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----GKITGEAFVQFASQELAEKALG-KHKERIGHR--- 111 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-HCCCEECCE---
Confidence 36799999999999999999999999 787 899988764 4555699999999999999997 578999999
Q ss_pred cceEEEEeecC
Q 026826 209 SVKLRLQFARY 219 (232)
Q Consensus 209 ~~~L~V~~ak~ 219 (232)
.|+|..+..
T Consensus 112 --~I~V~~a~~ 120 (126)
T 2hgm_A 112 --YIEVFKSSQ 120 (126)
T ss_dssp --CCCCEEECH
T ss_pred --EEEEEECCH
Confidence 899988754
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.5e-16 Score=125.24 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++ ++|..+.|+ .
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-----~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD---TGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR-----K 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS---SSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS-----C
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC---CCccceEEEEEECCHHHHHHHHh-CCCEEeCCe-----E
Confidence 67999999999999999999999999999999988752 25566799999999999999997 899999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|+||+++
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999874
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=9.3e-16 Score=132.57 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~----~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
++++|||+|||.++++++|+ ++|++||.|++|+++.. |+++|||||+|.+.++|++||+.|||..|.++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~- 80 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDK- 80 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeCCc-
Confidence 47899999999999999976 89999999999998752 34456999999999999999999999999999
Q ss_pred CCcceEEEEeecCCC
Q 026826 207 RDSVKLRLQFARYPG 221 (232)
Q Consensus 207 ~~~~~L~V~~ak~~~ 221 (232)
.|+|+|++...
T Consensus 81 ----~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 ----PMRIQYAKTDS 91 (282)
T ss_pred ----EEEEEEeccCc
Confidence 99999997653
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=4.9e-16 Score=131.33 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 129 PDASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 129 ~~~~~tLfV~nLp~-~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
..++++|||+|||. ++++++|+++|++||.|.+|+|+.++ .| ||||+|.+.++|++|++.|||..|.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g----~afV~F~~~~~A~~Ai~~l~g~~~~g~-- 100 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KE----NALVQMADGNQAQLAMSHLNGHKLHGK-- 100 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SC----CEEEEESCHHHHHHHHHHHTTCBCSSS--
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CC----EEEEEECCHHHHHHHHHHhCCCeECCe--
Confidence 34588999999999 99999999999999999999998875 23 999999999999999999999999999
Q ss_pred CcceEEEEeecCC
Q 026826 208 DSVKLRLQFARYP 220 (232)
Q Consensus 208 ~~~~L~V~~ak~~ 220 (232)
.|+|+|++..
T Consensus 101 ---~l~v~~a~~~ 110 (229)
T 2adc_A 101 ---PIRITLSKHQ 110 (229)
T ss_dssp ---BCEEECCSCC
T ss_pred ---EEEEEEecCc
Confidence 9999999864
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=9.8e-16 Score=121.17 Aligned_cols=80 Identities=21% Similarity=0.407 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|.+++++.+.. .|.++|||||+|.+.++|.+|++.|||..+.|+. .+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~~ 161 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV---TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT---EP 161 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---SC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc---cc
Confidence 67999999999999999999999999999999988752 2556679999999999999999999999999972 15
Q ss_pred EEEEee
Q 026826 212 LRLQFA 217 (232)
Q Consensus 212 L~V~~a 217 (232)
|+|+||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 899886
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=8e-16 Score=127.14 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.++ .
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-----~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV---TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR-----N 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C---C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C-----C
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---CCccCceEEEEeCCHHHHHHHHHHccCCeeCCe-----e
Confidence 67999999999999999999999999999999988752 234456999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|.++...
T Consensus 100 l~v~~~~~~ 108 (216)
T 2qfj_A 100 IKVGRPSNI 108 (216)
T ss_dssp CEEECCSCC
T ss_pred EEEecCCCc
Confidence 999988654
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.1e-15 Score=113.85 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 131 ~~~tLfV~nLp~-----~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
++++|+|.||.. +-++++|+++|++||.|.+|+|+.++. ..+.++|||||+|.+.++|.+|++.|||..++|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~--~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG--APDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS--CCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 488999999963 347899999999999999999988742 1234567999999999999999999999999999
Q ss_pred CCCcceEEEEeecC
Q 026826 206 DRDSVKLRLQFARY 219 (232)
Q Consensus 206 ~~~~~~L~V~~ak~ 219 (232)
.|+|+|+..
T Consensus 85 -----~i~v~~a~~ 93 (105)
T 2pe8_A 85 -----VVKACFYNL 93 (105)
T ss_dssp -----ECEEEECCH
T ss_pred -----EEEEEEcCH
Confidence 999999864
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.8e-15 Score=120.78 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=72.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++... .+.++|||||+|.+.++|++|++.|||..+.+. ....
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~--~~~~ 79 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN-PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG--MHHP 79 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS-SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT--CSSC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-CCCcceEEEEEECCHHHHHHHHHHhcCcEEccC--Cccc
Confidence 6899999999999999999999999999999999876421 125677999999999999999999999888632 1227
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|.+.+++..
T Consensus 80 ~~~~~~~~~ 88 (175)
T 3nmr_A 80 IQMKPADSE 88 (175)
T ss_dssp CEEEECGGG
T ss_pred eEEcccccc
Confidence 888887754
No 179
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.1e-15 Score=131.58 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCC---------CHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 026826 131 ASSTLFVEGLPSDC---------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR 201 (232)
Q Consensus 131 ~~~tLfV~nLp~~~---------te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~ 201 (232)
.+++|||+||+.++ +|++|+++|++||.|.+|+|+..+ | ||||+|.+.++|+.|+++|||..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-----G----~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-----N----CGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-----C----EEEEEeCCHHHHHHHHHHhCCCE
Confidence 47899999999998 799999999999999999998653 3 99999999999999999999999
Q ss_pred e------------CCCCCCcceEEEEeecCC
Q 026826 202 F------------DEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 202 l------------~g~~~~~~~L~V~~ak~~ 220 (232)
| .++ .|.|.||+..
T Consensus 204 l~~~~~~e~~~~~~gr-----~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGT-----GLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSC-----CCEEEECC--
T ss_pred EeccccccccccCCCC-----EEEEEEccCC
Confidence 9 677 9999999864
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2.8e-15 Score=129.54 Aligned_cols=76 Identities=33% Similarity=0.656 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CCCCCc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD-EHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~-g~~~~~ 209 (232)
++++|||+|||.++++++|+++|++||.|++|+|+.++ .| ||||+|.+.++|++|++.|||..|. ++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g----~afV~f~~~~~A~~A~~~l~g~~~~~g~---- 273 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HD----IAFVEFDNEVQAGAARDALQGFKITQNN---- 273 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----Cc----EEEEEeCCHHHHHHHHHHcCCcEeCCCC----
Confidence 47899999999999999999999999999999999654 13 9999999999999999999999999 88
Q ss_pred ceEEEEeecC
Q 026826 210 VKLRLQFARY 219 (232)
Q Consensus 210 ~~L~V~~ak~ 219 (232)
.|+|+|+|.
T Consensus 274 -~l~v~~akk 282 (282)
T 3pgw_A 274 -AMKISFAKK 282 (282)
T ss_pred -EEEEEEecC
Confidence 999999973
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=3.8e-15 Score=119.53 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
..++|||+|||.++++++|+++|++||.|..+ ... |.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR----- 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSS----SSCCSEEEEECSSHHHHHHHHHHHTEEEETTE-----
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 37899999999999999999999999987765 222 34445999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|+|++++
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999864
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=3.1e-15 Score=124.28 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||+++|+++|+++|++||.|..|+|+.+.. |.++|||||+|.+.++|++|++.+ +..++|+ .
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr-----~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETP-GQKYKET-----D 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCT-TCEETTE-----E
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhC-CCeECCE-----E
Confidence 47999999999999999999999999999999998754 566789999999999999999765 4699999 9
Q ss_pred EEEEeecCC
Q 026826 212 LRLQFARYP 220 (232)
Q Consensus 212 L~V~~ak~~ 220 (232)
|+|.+++.-
T Consensus 179 l~V~~~~~y 187 (193)
T 2voo_A 179 LLILFKDDY 187 (193)
T ss_dssp CEEEETTTC
T ss_pred EEEEEhHHH
Confidence 999998653
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4e-15 Score=128.67 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~~-te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
..++|||+|||.++ ++++|+++|++||.|.+|+|+.+.. |.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 254 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGGS---- 254 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETTE----
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCCe----
Confidence 37899999999995 9999999999999999999998764 56677999999999999999999999999999
Q ss_pred ceEEEEeecCCCC
Q 026826 210 VKLRLQFARYPGA 222 (232)
Q Consensus 210 ~~L~V~~ak~~~~ 222 (232)
.|+|+|++++..
T Consensus 255 -~l~v~~a~~~~~ 266 (284)
T 3smz_A 255 -HLRVSFCAPGPP 266 (284)
T ss_dssp -ECEEEECCSSSC
T ss_pred -EEEEEEecCCCc
Confidence 999999987643
No 184
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.8e-15 Score=118.37 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=69.6
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCC----HHH----HHHHHH--HhC
Q 026826 133 STLFVEGL----PSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAH----AATAMD--ALQ 198 (232)
Q Consensus 133 ~tLfV~nL----p~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~----~~~----A~~Ai~--~Ln 198 (232)
+.|||+|| |+.+++.+|+++|++||+|.+|.++.|+. .|.++|||||+|.+ +++ |.+|++ .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~---Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN---SALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT---TCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 58999999 99999999999999999999999999974 47888999999996 323 788888 789
Q ss_pred CceeCCCCCCcceEEEEeecC
Q 026826 199 GYRFDEHDRDSVKLRLQFARY 219 (232)
Q Consensus 199 G~~l~g~~~~~~~L~V~~ak~ 219 (232)
|..|+|+ +|+|.+-+.
T Consensus 80 g~~I~Gr-----~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMGF-----KFEVILNKH 95 (136)
T ss_dssp CEEETTE-----EEEEEECCT
T ss_pred CCeecCc-----EEEEEECcc
Confidence 9999999 999998654
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=3e-15 Score=118.89 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+++|||+|||.++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++ ++..+.|+ .
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~-----~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA---TGRSRGFGFLSFEKPSSVDEVVK--TQHILDGK-----V 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT---TSSCCSCEEEEESSTHHHHHHHH--SCCEETTE-----E
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC---CCCccceEEEEEccHHHHHHHHh--cccccCCe-----E
Confidence 68999999999999999999999999999999988752 24555699999999999999998 46788888 8
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
|.|.++..
T Consensus 73 i~v~~~~~ 80 (167)
T 2cjk_A 73 IDPKRAIP 80 (167)
T ss_dssp CCCEECCC
T ss_pred cccccccc
Confidence 88888754
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.9e-14 Score=108.07 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCC-----------HHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 026826 131 ASSTLFVEGLPSDCS-----------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQG 199 (232)
Q Consensus 131 ~~~tLfV~nLp~~~t-----------e~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG 199 (232)
++++|+|.||..... +++|+++|++||.|++|.| .++ +. +|||||+|.+.++|++|++.|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~----~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HP----DGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CT----TCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CC----CEEEEEEECCHHHHHHHHHHcCC
Confidence 488999999944332 6899999999999999966 443 12 34999999999999999999999
Q ss_pred ceeCCCCCCcceEEEEeecCC
Q 026826 200 YRFDEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 200 ~~l~g~~~~~~~L~V~~ak~~ 220 (232)
..|+++ +|+|+|+...
T Consensus 87 ~~~~gr-----~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGR-----QITAQAWDGT 102 (112)
T ss_dssp CEETTE-----ECEEEECCSC
T ss_pred CEECCc-----EEEEEEeCCC
Confidence 999999 9999999765
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=4e-15 Score=124.61 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCe--EEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY--KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i--~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
++++|||+|||+++|+++|+++|++||.| ++|+++.++.+ .+|||||+|.+.++|.+||..|||+.|.+.. .
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~-----~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~-~ 195 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSE-----RSSSGLLEWDSKSDALETLGFLNHYQMKNPN-G 195 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSS-----SSEEEEEECSSHHHHHHHHHHHTTCEECCSS-S
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCC-----CceEEEEEeCCHHHHHHHHHHhCCCCccCCC-C
Confidence 37899999999999999999999999999 89999877532 2359999999999999999999999999873 2
Q ss_pred cceEEEEee
Q 026826 209 SVKLRLQFA 217 (232)
Q Consensus 209 ~~~L~V~~a 217 (232)
..++.|.|+
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 345776665
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=4.3e-15 Score=121.85 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=70.7
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~-~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
+++|||+|||. ++++++|+++|++||.|.+|+++.++ .| ||||+|.+.++|++|++.|||..+.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g----~afV~f~~~~~a~~A~~~l~~~~~~g~----- 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KE----NALVQMADGNQAQLAMSHLNGHKLHGK----- 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SS----CCEEECTTTHHHHHHHHHHTTCCCSSC-----
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCeecCe-----
Confidence 67999999999 99999999999999999999998775 23 999999999999999999999999999
Q ss_pred eEEEEeecCC
Q 026826 211 KLRLQFARYP 220 (232)
Q Consensus 211 ~L~V~~ak~~ 220 (232)
.|+|+|++..
T Consensus 70 ~l~v~~a~~~ 79 (198)
T 1qm9_A 70 PIRITLSKHQ 79 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEecCC
Confidence 9999999764
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=6e-15 Score=120.97 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD-EHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG-~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~-g~~~~ 208 (232)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. .| ||||+|.+.++|.+|++.|||..+. ++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g----~afV~f~~~~~A~~A~~~l~g~~~~~g~--- 187 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RK----MALIQMGSVEEAVQALIDLHNHDLGENH--- 187 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SS----CEEEECSSHHHHHHHHHHHTSSCCSSCC---
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----Cc----EEEEEeCCHHHHHHHHHHhcCCccCCCC---
Confidence 478999999999999999999999999 99999997643 23 9999999999999999999999999 88
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
.|+|+|++++
T Consensus 188 --~l~v~~a~~~ 197 (198)
T 1qm9_A 188 --HLRVSFSKST 197 (198)
T ss_dssp --SCCEEEECCC
T ss_pred --eEEEEeeccc
Confidence 9999999874
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=1e-14 Score=123.14 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CCCCC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD-EHDRD 208 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG-~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~-g~~~~ 208 (232)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. .| ||||+|.+.++|.+|++.|||..|. ++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~l~g~~~~~g~--- 218 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RK----MALIQMGSVEEAVQALIDLHNHDLGENH--- 218 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS----TT----CEEEEESSHHHHHHHHHHHTTCBSSSSC---
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC----Cc----EEEEEECCHHHHHHHHHHHCCCccCCCC---
Confidence 378999999999999999999999999 99999997642 23 9999999999999999999999999 88
Q ss_pred cceEEEEeecCC
Q 026826 209 SVKLRLQFARYP 220 (232)
Q Consensus 209 ~~~L~V~~ak~~ 220 (232)
.|+|+|++++
T Consensus 219 --~l~v~~a~~~ 228 (229)
T 2adc_A 219 --HLRVSFSKST 228 (229)
T ss_dssp --BCEEEECSSC
T ss_pred --eEEEEEecCC
Confidence 9999999874
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.9e-14 Score=123.97 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.+++|||+|||+++|+++|+++|++||.|.+|+|..++ | ||||+|.+.++|..|++.|||..|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-----g----~afV~f~~~~~A~~A~~~l~g~~i~g~----- 86 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-----G----FGFIRLESRTLAEIAKAELDGTILKSR----- 86 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----c----EEEEEECCHHHHHHHHHHcCCcEECCc-----
Confidence 36899999999999999999999999999999997542 3 999999999999999999999999999
Q ss_pred eEEEEeecC
Q 026826 211 KLRLQFARY 219 (232)
Q Consensus 211 ~L~V~~ak~ 219 (232)
.|+|.|+..
T Consensus 87 ~l~v~~a~~ 95 (261)
T 3sde_A 87 PLRIRFATH 95 (261)
T ss_dssp ECEEEECCC
T ss_pred eeEeeeccc
Confidence 999999865
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=9.8e-15 Score=126.71 Aligned_cols=82 Identities=10% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCc
Q 026826 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDS 209 (232)
Q Consensus 131 ~~~tLfV~nLp~~-~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~ 209 (232)
.+++|||+|||.+ +++++|+++|++||.|..|+|+.+.. ..|.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~---- 281 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK--EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR---- 281 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETTE----
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC--cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc----
Confidence 4789999999999 99999999999999999999988653 01445569999999999999999 9999999999
Q ss_pred ceEEEEeecCC
Q 026826 210 VKLRLQFARYP 220 (232)
Q Consensus 210 ~~L~V~~ak~~ 220 (232)
.|+|+|++++
T Consensus 282 -~i~V~~a~~k 291 (292)
T 2ghp_A 282 -EISVSLADKK 291 (292)
T ss_dssp -EEEEEECCCC
T ss_pred -EEEEEEecCC
Confidence 9999999874
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.8e-14 Score=123.40 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
.++|||+|||.++++++|+++|++||.|..|+++.+.. .|.++|||||+|.+.++|..|++.|||..|.++ .
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-----~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER---TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR-----T 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc-----E
Confidence 57999999999999999999999999999999988752 256778999999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q 026826 212 LRLQFARYPG 221 (232)
Q Consensus 212 L~V~~ak~~~ 221 (232)
|+|+|+....
T Consensus 167 i~v~~a~~~~ 176 (284)
T 3smz_A 167 LYVHWTDAGQ 176 (284)
T ss_dssp CEEEECCGGG
T ss_pred EEEEECCCCC
Confidence 9999997653
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=4.5e-15 Score=119.11 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCC
Q 026826 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRD 208 (232)
Q Consensus 129 ~~~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~ 208 (232)
+..+++|||+|||.++|+++|+++|++||.+..+.+..... |.++|||||+|.+.++|++|+ .|||..|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--- 81 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT----GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN--- 81 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE----ETTTTEEEEEESSHHHHHHHH-HGGGEEETTE---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC----CccccEEEEEECCHHHHHHHH-hcCCCEeCCe---
Confidence 34578999999999999999999999998776532222222 334459999999999999999 5999999999
Q ss_pred cceEEEEeecCCC
Q 026826 209 SVKLRLQFARYPG 221 (232)
Q Consensus 209 ~~~L~V~~ak~~~ 221 (232)
.|+|++++...
T Consensus 82 --~l~v~~~~~~~ 92 (175)
T 1fje_B 82 --EIKLEKPKGRD 92 (175)
T ss_dssp --EEEEECCCCSS
T ss_pred --EEEEecCCCcc
Confidence 99999998653
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=5.8e-14 Score=111.91 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC----C-------CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY 200 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~f----G-------~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~ 200 (232)
+++|||+|||.++|+++|+++|++| | .|.++++...+ | ||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-----g----~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-----T----EEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-----C----EEEEEeCCHHHHHHHH-HhCCc
Confidence 6899999999999999999999999 6 78888776542 3 9999999999999999 89999
Q ss_pred eeCCCCCCcceEEEEeecCC
Q 026826 201 RFDEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 201 ~l~g~~~~~~~L~V~~ak~~ 220 (232)
.+.|+ .|+|++++..
T Consensus 74 ~~~g~-----~i~v~~~~~~ 88 (172)
T 2g4b_A 74 IFQGQ-----SLKIRRPHDY 88 (172)
T ss_dssp EETTE-----ECEEECCSSC
T ss_pred EecCc-----eeeecCCccc
Confidence 99999 9999998764
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=1.2e-13 Score=118.96 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceeC---CCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ-GYRFD---EHDR 207 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln-G~~l~---g~~~ 207 (232)
+++|||+|||..+|+++|+++|++||.|.+|+|+.+.. |.++|||||+|.+.++|.+|++.|| +..+. ++
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r-- 169 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR-- 169 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC--
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc--
Confidence 57999999999999999999999999999999998853 5667799999999999999999995 44544 66
Q ss_pred CcceEEEEeecCC
Q 026826 208 DSVKLRLQFARYP 220 (232)
Q Consensus 208 ~~~~L~V~~ak~~ 220 (232)
+|.|+++...
T Consensus 170 ---~i~v~~~~~~ 179 (261)
T 3sde_A 170 ---PVIVEPMEQF 179 (261)
T ss_dssp ---BCEEEECCCE
T ss_pred ---eEEEeecccc
Confidence 9999998764
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=9.6e-14 Score=125.16 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=66.1
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 129 PDASSTLFVEG--LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 129 ~~~~~tLfV~n--Lp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
..++++|||+| |+.++||++|+++|++||.|.+|++... + |||||+|.+.++|++||+.|||..+.+..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-----k----gfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----K----PYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-----C----SEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----C----CEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 44588999999 5889999999999999999999887642 1 39999999999999999999999995321
Q ss_pred CCcceEEEEeec
Q 026826 207 RDSVKLRLQFAR 218 (232)
Q Consensus 207 ~~~~~L~V~~ak 218 (232)
..+.+|.|.|+.
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 111257888874
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.4e-14 Score=109.06 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=63.1
Q ss_pred EEcCCCCCCCHHHHHHHh------------cCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 026826 136 FVEGLPSDCSRREVAHIF------------RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD 203 (232)
Q Consensus 136 fV~nLp~~~te~~L~~lF------------~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~ 203 (232)
.+.||++++++++|+++| ++||.|.+|+|+.+.. +.++|||||+|.+.++|++|++.|||..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 366788888888887776 9999999999987653 456779999999999999999999999999
Q ss_pred CCCCCcceEEEEee
Q 026826 204 EHDRDSVKLRLQFA 217 (232)
Q Consensus 204 g~~~~~~~L~V~~a 217 (232)
|+ +|+|+|+
T Consensus 95 Gr-----~i~v~~s 103 (104)
T 1jmt_A 95 GQ-----PIHAELS 103 (104)
T ss_dssp TE-----ECCEEEC
T ss_pred CE-----EEEEEEc
Confidence 99 9999986
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=7.8e-14 Score=120.99 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSV 210 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG-~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~ 210 (232)
.++|||+|||.++++++|+++|++|| .|..|+++.++. |.++|||||+|.+.++|..|++.|||..|.|+
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 187 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY----- 187 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc-----
Confidence 67999999999999999999999999 999999988764 33445999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q 026826 211 KLRLQFARYPG 221 (232)
Q Consensus 211 ~L~V~~ak~~~ 221 (232)
.|+|.|+.+..
T Consensus 188 ~l~v~~a~~~~ 198 (292)
T 2ghp_A 188 TLVTKVSNPLE 198 (292)
T ss_dssp ECEEEECCCC-
T ss_pred EEEEEECCCCc
Confidence 99999998653
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.48 E-value=1e-13 Score=112.98 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=65.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC----C-------CeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY 200 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~f----G-------~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~ 200 (232)
+++|||+|||+++|+++|+++|++| | .|.++++...+ | ||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~-----g----~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT-----T----EEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC-----C----EEEEEeCCHHHHHHHH-HhcCC
Confidence 6899999999999999999999999 5 67777764332 3 9999999999999999 89999
Q ss_pred eeCCCCCCcceEEEEeecCC
Q 026826 201 RFDEHDRDSVKLRLQFARYP 220 (232)
Q Consensus 201 ~l~g~~~~~~~L~V~~ak~~ 220 (232)
.|.|+ .|+|++++..
T Consensus 74 ~~~g~-----~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQGQ-----SLKIRRPHDY 88 (198)
T ss_dssp EETTE-----EEEEECCCCC
T ss_pred EEcCc-----eEEEeCCCCC
Confidence 99999 9999998764
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=3e-13 Score=104.18 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=69.7
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHHhcCCCCeEEEEEecCCCC-CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 026826 131 ASSTLFVEGLP--SDC---SRREVAHIFRPFVGYKEVRLVSKESR-HPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE 204 (232)
Q Consensus 131 ~~~tLfV~nLp--~~~---te~~L~~lF~~fG~i~~vrl~~~~~~-~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g 204 (232)
++++|+|.|+- .++ .++||++.|++||.|.+|+|+.+... ...+.++||+||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 37899999983 222 37899999999999999999987531 1124566899999999999999999999999999
Q ss_pred CCCCcceEEEEeec
Q 026826 205 HDRDSVKLRLQFAR 218 (232)
Q Consensus 205 ~~~~~~~L~V~~ak 218 (232)
+ .|+|+|+.
T Consensus 99 R-----~i~v~~~~ 107 (118)
T 3ue2_A 99 R-----KVVAEVYD 107 (118)
T ss_dssp E-----ECEEEEEC
T ss_pred c-----EEEEEEcC
Confidence 9 99999974
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2.8e-13 Score=102.11 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=68.0
Q ss_pred CcEEEEcCC--CCCCC--------HHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 026826 132 SSTLFVEGL--PSDCS--------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYR 201 (232)
Q Consensus 132 ~~tLfV~nL--p~~~t--------e~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~ 201 (232)
++.|.|.|+ |.++. +++|+++|++||.|.+|+|+.+...+ .+.++||+||+|.+.++|.+|++.|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV-EVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB-CCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC-CcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 789999998 44443 36899999999999999998775321 12345699999999999999999999999
Q ss_pred eCCCCCCcceEEEEeec
Q 026826 202 FDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 202 l~g~~~~~~~L~V~~ak 218 (232)
++|+ .|+|+|+.
T Consensus 84 f~GR-----~i~v~~~~ 95 (105)
T 3v4m_A 84 FANR-----VVVTKYCD 95 (105)
T ss_dssp ETTE-----ECEEEEEC
T ss_pred eCCC-----EEEEEEeC
Confidence 9999 99999974
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=97.68 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=61.0
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 026826 132 SSTLFVEGLP-------SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDE 204 (232)
Q Consensus 132 ~~tLfV~nLp-------~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g 204 (232)
.++|-|.-.. .++++++|+++|++||.|++|+|+. + ++|||||+|.+.++|+.||+.+++ +.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----~----~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----K----KPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----S----SSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----C----CCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 3466665433 4689999999999999999999982 1 224999999999999999988655 567
Q ss_pred CCCCcceEEEEeecCCCC
Q 026826 205 HDRDSVKLRLQFARYPGA 222 (232)
Q Consensus 205 ~~~~~~~L~V~~ak~~~~ 222 (232)
+ +|+|+|++.+..
T Consensus 80 ~-----~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 N-----PLKISWLEGQPQ 92 (100)
T ss_dssp S-----BCEEECSSCCCC
T ss_pred C-----eEEEEEccCCCC
Confidence 7 999999987643
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=1.1e-11 Score=94.93 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=64.7
Q ss_pred CCCCcEEEEcCCCC--CC--------CHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026826 129 PDASSTLFVEGLPS--DC--------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (232)
Q Consensus 129 ~~~~~tLfV~nLp~--~~--------te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln 198 (232)
|.+++.|.+.|+=. +. .++||++.|++||.|.+|.|..+.. +||+||+|.+.++|.+|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~-------~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA-------QGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCT-------TCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCC-------cEEEEEEECCHHHHHHHHHHhC
Confidence 44588999999732 21 1357899999999999999866531 2499999999999999999999
Q ss_pred CceeCCCCCCcceEEEEeec
Q 026826 199 GYRFDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 199 G~~l~g~~~~~~~L~V~~ak 218 (232)
|..++|+ .|+|+|+.
T Consensus 77 G~~f~GR-----~i~v~~~~ 91 (114)
T 3s6e_A 77 GRWFAGK-----MITAAYVP 91 (114)
T ss_dssp TCEETTE-----ECEEEEEC
T ss_pred CCEECCE-----EEEEEEEc
Confidence 9999999 99999984
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.9e-11 Score=92.25 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceeCCCC
Q 026826 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS-PAHAATAMDALQ--GYRFDEHD 206 (232)
Q Consensus 131 ~~~tLfV~nLp~~-~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~-~~~A~~Ai~~Ln--G~~l~g~~ 206 (232)
++..|||+||+.+ +++++|+++|++||.|..|.++.+.. .|||.|.+ ..+|..|++.|| +..|.+.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~- 86 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRNK- 86 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS-
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeCc-
Confidence 4889999999999 99999999999999999999988764 79999999 899999999994 7788887
Q ss_pred CCcceEEEEee
Q 026826 207 RDSVKLRLQFA 217 (232)
Q Consensus 207 ~~~~~L~V~~a 217 (232)
.++++..
T Consensus 87 ----~~~~evL 93 (121)
T 1owx_A 87 ----EVTWEVL 93 (121)
T ss_dssp ----SEEEEEC
T ss_pred ----EEEEEEC
Confidence 7777654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=5.2e-11 Score=87.39 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=61.4
Q ss_pred CcEEEEcCCCC----CCCH----HHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 026826 132 SSTLFVEGLPS----DCSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFD 203 (232)
Q Consensus 132 ~~tLfV~nLp~----~~te----~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~ 203 (232)
..||+|.-++. +.-. .+|.+.|.+||.|..++++.+ .+||+|.+.++|.+||+ |||+.+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 45888877662 2333 578899999999999999987 48999999999999998 9999999
Q ss_pred CCCCCcceEEEEeecCC
Q 026826 204 EHDRDSVKLRLQFARYP 220 (232)
Q Consensus 204 g~~~~~~~L~V~~ak~~ 220 (232)
|+ .|+|+++++.
T Consensus 75 Gr-----~LkV~lkt~d 86 (91)
T 2dnr_A 75 NR-----TITIALKSPS 86 (91)
T ss_dssp TE-----EEEEEECCCS
T ss_pred Ce-----EEEEEeCCCC
Confidence 99 9999998864
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=6.3e-10 Score=82.13 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=59.6
Q ss_pred CcEEEEcCCCCC------CCH---HHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 026826 132 SSTLFVEGLPSD------CSR---REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRF 202 (232)
Q Consensus 132 ~~tLfV~nLp~~------~te---~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l 202 (232)
..||+|..++.. ..+ .+|.+.|.+||.|..++++.+ -+||+|.+.++|.+||+ |||+++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------cEEEEEcChHHHHHHHh-cCCeee
Confidence 458999887642 221 468899999999999999987 48999999999999998 999999
Q ss_pred CCCCCCcceEEEEeec
Q 026826 203 DEHDRDSVKLRLQFAR 218 (232)
Q Consensus 203 ~g~~~~~~~L~V~~ak 218 (232)
.++ .|+|++..
T Consensus 83 ~Gr-----~L~V~~k~ 93 (95)
T 1ufw_A 83 KGR-----AVKISGPS 93 (95)
T ss_dssp TTE-----EEEEECCC
T ss_pred CCe-----EEEEeccC
Confidence 999 99999753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.90 E-value=3.4e-09 Score=88.64 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=60.3
Q ss_pred CCHHHHHHHhcCCCCeEEEEEecCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceEEEEeec
Q 026826 144 CSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFAR 218 (232)
Q Consensus 144 ~te~~L~~lF~~fG~i~~vrl~~~~-~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L~V~~ak 218 (232)
-.+++|.+.|++||.|.+|.|..+. .....+.++|++||+|.+.++|.+|++.|||..+.|+ .|+|+|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr-----~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR-----KVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS-----BCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe-----EEEEEEcC
Confidence 4567899999999999999998654 2223456778999999999999999999999999999 99999974
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=8.4e-07 Score=67.00 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC-----CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~f-----G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
.++|-+=|||..+++..|+.+.+++ |.|++|.|+.+.. -|+|+|.+...|.+|.-+|+|++|+++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---------GAivef~d~~~AgKasLaL~G~ef~gr- 90 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---------GAIIIFRDSKFAAKMLMILNGSQFQGK- 90 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---------EEEEECSCHHHHHHHHHHHSSEEETTE-
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---------ceEEEEccchhhHHHHhhcCCeeecCe-
Confidence 5689999999999999999999999 9999999999864 599999999999999999999999999
Q ss_pred CCcceEEEE
Q 026826 207 RDSVKLRLQ 215 (232)
Q Consensus 207 ~~~~~L~V~ 215 (232)
+|++-
T Consensus 91 ----~Lr~g 95 (117)
T 2l9w_A 91 ----VIRSG 95 (117)
T ss_dssp ----EEEEE
T ss_pred ----EEEec
Confidence 89875
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.10 E-value=2e-05 Score=58.22 Aligned_cols=56 Identities=16% Similarity=0.396 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln 198 (232)
....++| ++|.+....||.++|++||.|. |+.+.+. -|||.|.+++.|..|++.+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 3567777 9999999999999999999665 7777774 79999999999999998763
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=9.9e-06 Score=60.56 Aligned_cols=75 Identities=24% Similarity=0.262 Sum_probs=63.5
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 132 SSTLFVEGLPSDC-S----RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 132 ~~tLfV~nLp~~~-t----e~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
.++|+|.||+.++ + ++.++++|..|+++......+.-. -..|.|.++++|.+|...||+..+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g~- 74 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLGK- 74 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETTE-
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecCc-
Confidence 3689999998865 3 256789999999998877766542 468999999999999999999999999
Q ss_pred CCcceEEEEeecCC
Q 026826 207 RDSVKLRLQFARYP 220 (232)
Q Consensus 207 ~~~~~L~V~~ak~~ 220 (232)
.|+|-|+...
T Consensus 75 ----~~r~YFgq~~ 84 (104)
T 1wey_A 75 ----EMKLYFAQTL 84 (104)
T ss_dssp ----ECEEECCCCS
T ss_pred ----eeEEEecCCC
Confidence 9999999743
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.96 E-value=9e-05 Score=54.14 Aligned_cols=87 Identities=14% Similarity=0.289 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcceE
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKL 212 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~L 212 (232)
++|.|.+||+.+||+++.+.+.....+.....+..+... +-..-.-|+|.|.+.+++..-.+.++|+.+.+.+....+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL-YPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS-TTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 479999999999999999999999887777776655211 1122358999999999999999999999997765444566
Q ss_pred EEEeecCC
Q 026826 213 RLQFARYP 220 (232)
Q Consensus 213 ~V~~ak~~ 220 (232)
.|+||-.+
T Consensus 81 ~VE~AP~q 88 (91)
T 1uw4_A 81 IVEFAPFQ 88 (91)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 78888543
No 213
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.45 E-value=0.00039 Score=51.28 Aligned_cols=87 Identities=15% Similarity=0.283 Sum_probs=63.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCCCcce
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDRDSVK 211 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~~~~~ 211 (232)
+-+|.|+.||+.+||+++.+.+...-.+.....+..+... +-..-.-|+|.|.+.++...-.+.++|+.+.+.+.+..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL-YPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS-CCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4589999999999999998888876554333333322110 111124699999999999999999999999877655567
Q ss_pred EEEEeecC
Q 026826 212 LRLQFARY 219 (232)
Q Consensus 212 L~V~~ak~ 219 (232)
-.|+||-.
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 78998854
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00026 Score=52.35 Aligned_cols=54 Identities=17% Similarity=0.411 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln 198 (232)
..|+| ++|.+....||.++|++||+| .|+.+.+. -|||.|.+++.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 47777774 79999999999999998774
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0018 Score=49.45 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=51.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEH 205 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~ 205 (232)
.+.|-|-+.|+.. ...|...|++||.|++....... . +-.|.|.++.+|++|| ..||..|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~-----N----WihI~Y~s~~~A~rAL-~kNG~ii~g~ 86 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG-----N----WMHIRYQSKLQARKAL-SKDGRIFGES 86 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS-----S----EEEEEESSHHHHHHHH-TTTTCEETTT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC-----C----eEEEEeCCHHHHHHHH-HhCCeEecCC
Confidence 5678888999885 66788899999999988863221 1 9999999999999999 4699999865
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.0048 Score=45.86 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=53.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcC----C-CCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRP----F-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHD 206 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~----f-G~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~ 206 (232)
.++|.|.|||+++.++.|.-.|++ - |.|..|.... . -|+|+|.+.+.|++.++. .-+.|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~---------~AvItF~d~~va~rVL~k-~~H~L~~~- 74 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C---------GGVLTFREPADAERVLAQ-ADHELHGA- 74 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T---------EEEEEESSHHHHHHHHTC-SCCBSSSS-
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C---------cEEEEEcChHHHHHHhcC-CcceecCe-
Confidence 579999999999999999999987 2 5677777654 1 699999999999988842 35677776
Q ss_pred CCcceEEEE
Q 026826 207 RDSVKLRLQ 215 (232)
Q Consensus 207 ~~~~~L~V~ 215 (232)
.|.|.
T Consensus 75 ----~LsV~ 79 (104)
T 2dhx_A 75 ----QLSLR 79 (104)
T ss_dssp ----BCEEE
T ss_pred ----EEEEE
Confidence 77774
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.43 E-value=0.0075 Score=56.04 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=40.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~ 195 (232)
.+.|||. .|.++++.+|.+.|++||.|.++.+-.++ | .||.|||.+.+++..+++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999998776543 2 399999999999886653
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.84 E-value=0.012 Score=45.48 Aligned_cols=39 Identities=13% Similarity=-0.031 Sum_probs=34.4
Q ss_pred CcceEEEEEeCCHHHHHHHHHHh-CCceeCCCCCCcceEEEEeecC
Q 026826 175 DPLILCFVDFVSPAHAATAMDAL-QGYRFDEHDRDSVKLRLQFARY 219 (232)
Q Consensus 175 ~~~g~aFVeF~~~~~A~~Ai~~L-nG~~l~g~~~~~~~L~V~~ak~ 219 (232)
+.+|+++|+|.+.++|++|++.| ||..++| .|+++++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G------~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG------EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC------EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC------ceecccccC
Confidence 45569999999999999999999 9999988 489998865
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.69 E-value=0.022 Score=44.05 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=27.0
Q ss_pred EEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 026826 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGY 200 (232)
Q Consensus 161 ~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~ 200 (232)
.++|+.+.. +++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~~-----~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-----TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-----SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-----cccchhHHHHHHHHhHHHHHHhhccc
Confidence 355665542 34569999999999999999988753
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.23 E-value=0.14 Score=48.00 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~Ln 198 (232)
...|+|+ +|..+...+|.++|+.||. .+|+.+.+. .|||.|.+.+.|..++++++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 4577776 8889999999999999995 457766553 89999999999999999885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.40 E-value=0.17 Score=39.10 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=51.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE-EEec---------CC-CCC---CCCCcceEEEEEeCCHHHHHHHHHHh
Q 026826 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVS---------KE-SRH---PGGDPLILCFVDFVSPAHAATAMDAL 197 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~L~~lF~~fG~i~~v-rl~~---------~~-~~~---~~G~~~g~aFVeF~~~~~A~~Ai~~L 197 (232)
...|.|=+.|+.. ...+.+.|++||.|.+- .+.. .+ .+- .++ .+-.|.|.++.+|.+|| ..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~---NWikItYds~~~A~rAL-~~ 81 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGN---SWTKITYDNPASAVDAL-LE 81 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEET---TEEEEEBSSHHHHHHHH-TT
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCC---cEEEEEcCCHHHHHHHH-Hh
Confidence 3467777887654 45577889999999872 1111 00 000 012 28899999999999999 57
Q ss_pred CCceeCCCCCCcceEEEEee
Q 026826 198 QGYRFDEHDRDSVKLRLQFA 217 (232)
Q Consensus 198 nG~~l~g~~~~~~~L~V~~a 217 (232)
||..|.|. -|-|..-
T Consensus 82 NG~ii~G~-----mIGV~Py 96 (132)
T 3p3d_A 82 NGAVFNGV-----LLGVIPY 96 (132)
T ss_dssp TTCEETTE-----ECEEEEC
T ss_pred CCeEeCcE-----EEEEEEC
Confidence 99999887 6666543
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.64 E-value=4.3 Score=27.27 Aligned_cols=68 Identities=9% Similarity=0.258 Sum_probs=43.3
Q ss_pred EEEEcC-CCCCCCHHHHHHHhcCCCC-----eEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCCCC
Q 026826 134 TLFVEG-LPSDCSRREVAHIFRPFVG-----YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRFDEHDR 207 (232)
Q Consensus 134 tLfV~n-Lp~~~te~~L~~lF~~fG~-----i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l~g~~~ 207 (232)
+|||.. --..++..+|..++..-+. |-.|++..+ |.||+-.. +.|..+++.|++..+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-----------~s~v~v~~-~~~~~~~~~l~~~~i~g~-- 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-----------ASYVEILN-GKGPHVLKVMKNTTVKGK-- 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-----------CEEEEECT-TCHHHHHHHHTTCCC-----
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-----------cEEEEECH-HHHHHHHHHhccccCcCc--
Confidence 577732 2345777777777765554 445666433 89999875 457889999999999999
Q ss_pred CcceEEEEeec
Q 026826 208 DSVKLRLQFAR 218 (232)
Q Consensus 208 ~~~~L~V~~ak 218 (232)
.++|+.++
T Consensus 68 ---~~~v~~~~ 75 (76)
T 2g0c_A 68 ---QLKVNKAN 75 (76)
T ss_dssp ---CCCEEECC
T ss_pred ---eEEEEECC
Confidence 88888764
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.37 E-value=1.3 Score=32.20 Aligned_cols=17 Identities=6% Similarity=0.343 Sum_probs=0.0
Q ss_pred CcEEEEcCCCCCCCHHH
Q 026826 132 SSTLFVEGLPSDCSRRE 148 (232)
Q Consensus 132 ~~tLfV~nLp~~~te~~ 148 (232)
.++|||+|||+++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 56899999999999874
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.26 E-value=30 Score=27.57 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=38.0
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--cCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHH-HHHH
Q 026826 134 TLFVEGLPS-D--------CSRREVAHIF--RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA-ATAM 194 (232)
Q Consensus 134 tLfV~nLp~-~--------~te~~L~~lF--~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A-~~Ai 194 (232)
++.|-|+|. . ....+|.+.| +.|.+++ |+.+....+|++ ++.|+|.+--.. ..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g-----~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSG-----TAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEE-----EEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCce-----eEEEEecCChHHHHHHH
Confidence 566778886 2 3447899977 9998876 666666655554 999999985443 4444
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=36.88 E-value=1.1e+02 Score=21.80 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026826 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (232)
Q Consensus 131 ~~~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~L 197 (232)
.++-|-|-|+|..+-..++.-.....|---.|..+.. .|.|.|.+.++-..|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg-----------qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG-----------QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS-----------CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC-----------eeEEEecCChHHHHHHHHH
Confidence 3677888899999999998877777776556665532 7999999999999999876
No 226
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=33.41 E-value=6 Score=35.95 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=12.6
Q ss_pred HHHHhcCCCCeEEEE
Q 026826 149 VAHIFRPFVGYKEVR 163 (232)
Q Consensus 149 L~~lF~~fG~i~~vr 163 (232)
|..||.++++|..|.
T Consensus 9 L~~lF~p~pPl~~~~ 23 (437)
T 3pgw_S 9 LLALFAPRDPIPYLP 23 (437)
T ss_pred HHHhcCCCCCCcCCC
Confidence 788999999988773
No 227
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=30.34 E-value=1.3e+02 Score=22.21 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=20.9
Q ss_pred CCCeEEEEEecCCCCCCCCCcceEEEEE-eCCHHHHHHHHHHhC
Q 026826 156 FVGYKEVRLVSKESRHPGGDPLILCFVD-FVSPAHAATAMDALQ 198 (232)
Q Consensus 156 fG~i~~vrl~~~~~~~~~G~~~g~aFVe-F~~~~~A~~Ai~~Ln 198 (232)
+-.|.+|++-.|-.- .-.||. |-+.++.+.++++|+
T Consensus 43 ~vtVt~V~vS~Dl~~-------AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSA-------CRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCC-------EEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcE-------EEEEEEecCChhhHHHHHHHHH
Confidence 578999999887530 134555 445554444444443
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.03 E-value=96 Score=19.48 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQGYRF 202 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~~~~A~~Ai~~LnG~~l 202 (232)
.+|.|.++.=.--...++..+.. ..+..+.+-.... -+.|+|.+.++...+|+.+ |+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~---------~~~v~~~~~~~i~~~i~~~-Gy~~ 65 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEA---------VVAGNKEDVDKYIKAVEAA-GYQA 65 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEE---------EEEEEGGGHHHHHHHHHHT-TCEE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCC---------EEEEEECCHHHHHHHHHHc-CCce
Confidence 47889999877777888999988 8898887755431 6778888566666777543 5543
No 229
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.97 E-value=33 Score=23.03 Aligned_cols=8 Identities=38% Similarity=1.049 Sum_probs=7.3
Q ss_pred EEEEEeCC
Q 026826 179 LCFVDFVS 186 (232)
Q Consensus 179 ~aFVeF~~ 186 (232)
.|||.|++
T Consensus 39 ~ClV~FeD 46 (68)
T 2e5p_A 39 VCLVQFED 46 (68)
T ss_dssp EEEEEETT
T ss_pred EEEEEEcc
Confidence 89999986
No 230
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.29 E-value=1.4e+02 Score=18.09 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=38.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCCCcceEEEEEeCC---HHHHHHHHH
Q 026826 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS---PAHAATAMD 195 (232)
Q Consensus 133 ~tLfV~nLp~~~te~~L~~lF~~fG~i~~vrl~~~~~~~~~G~~~g~aFVeF~~---~~~A~~Ai~ 195 (232)
.+|.|.++.-.--...++..+....++..+.+-.... -+.|+|.. .+....+++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~---------~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE---------QAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT---------EEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC---------EEEEEECCCCCHHHHHHHHH
Confidence 3678888876666778889999998998888765532 57788743 344455554
No 231
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=20.49 E-value=2.2e+02 Score=21.76 Aligned_cols=47 Identities=13% Similarity=0.306 Sum_probs=33.7
Q ss_pred HHHhcCCCCeEEEEEecCC------------CCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026826 150 AHIFRPFVGYKEVRLVSKE------------SRHPGGDPLILCFVDFVSPAHAATAMDA 196 (232)
Q Consensus 150 ~~lF~~fG~i~~vrl~~~~------------~~~~~G~~~g~aFVeF~~~~~A~~Ai~~ 196 (232)
.++|..||-+.-|...-+. -+..-++...|.+|+|.+.+...++..+
T Consensus 51 ~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 51 APLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 3789999998766554332 1122356678999999999998888754
Done!