Query 026827
Match_columns 232
No_of_seqs 80 out of 82
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 13:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 98.8 2.2E-08 4.7E-13 71.9 7.1 74 88-166 1-81 (81)
2 cd00992 PDZ_signaling PDZ doma 98.3 4.7E-06 1E-10 58.5 8.3 67 92-165 11-81 (82)
3 cd00136 PDZ PDZ domain, also c 98.2 7E-06 1.5E-10 56.5 7.0 66 93-165 1-69 (70)
4 PF13180 PDZ_2: PDZ domain; PD 98.1 1.8E-05 3.9E-10 57.3 7.1 67 95-168 3-72 (82)
5 smart00228 PDZ Domain present 98.1 4E-05 8.7E-10 53.4 8.5 74 88-168 4-84 (85)
6 KOG3571 Dishevelled 3 and rela 97.8 0.00013 2.7E-09 72.5 9.4 89 81-171 245-342 (626)
7 cd00990 PDZ_glycyl_aminopeptid 97.7 0.00014 3.1E-09 51.4 6.6 64 95-167 3-66 (80)
8 cd00988 PDZ_CTP_protease PDZ d 97.5 0.00057 1.2E-08 48.6 7.7 66 95-168 4-72 (85)
9 cd00987 PDZ_serine_protease PD 97.4 0.00059 1.3E-08 48.6 6.2 58 104-168 23-82 (90)
10 cd00991 PDZ_archaeal_metallopr 97.1 0.002 4.3E-08 46.7 6.8 57 104-167 9-67 (79)
11 cd00989 PDZ_metalloprotease PD 97.0 0.0041 8.8E-08 43.5 7.0 55 106-167 13-68 (79)
12 KOG0609 Calcium/calmodulin-dep 96.5 0.0095 2.1E-07 59.3 8.2 73 92-168 133-205 (542)
13 cd00986 PDZ_LON_protease PDZ d 96.5 0.014 3E-07 41.7 6.6 55 106-168 9-65 (79)
14 TIGR00225 prc C-terminal pepti 96.4 0.012 2.5E-07 53.3 7.4 68 95-168 53-121 (334)
15 TIGR02037 degP_htrA_DO peripla 96.3 0.013 2.8E-07 54.6 7.3 67 95-168 236-315 (428)
16 COG0793 Prc Periplasmic protea 96.2 0.015 3.3E-07 55.2 7.4 82 85-171 89-174 (406)
17 PRK11186 carboxy-terminal prot 96.1 0.015 3.3E-07 58.8 7.3 72 95-168 246-320 (667)
18 TIGR02037 degP_htrA_DO peripla 96.1 0.017 3.7E-07 53.8 7.1 57 105-168 362-420 (428)
19 PLN00049 carboxyl-terminal pro 95.8 0.036 7.9E-07 51.7 7.6 69 95-168 87-161 (389)
20 PRK10139 serine endoprotease; 95.8 0.022 4.7E-07 54.6 6.2 57 105-168 390-446 (455)
21 TIGR02038 protease_degS peripl 95.5 0.027 5.8E-07 51.8 5.5 57 105-168 278-336 (351)
22 PRK10139 serine endoprotease; 95.4 0.036 7.8E-07 53.1 6.4 57 104-167 289-347 (455)
23 PRK10942 serine endoprotease; 95.2 0.07 1.5E-06 51.4 7.5 58 104-168 310-369 (473)
24 PRK10898 serine endoprotease; 95.2 0.049 1.1E-06 50.3 6.2 57 105-168 279-337 (353)
25 PRK10942 serine endoprotease; 95.1 0.049 1.1E-06 52.4 6.2 58 105-169 408-465 (473)
26 KOG1892 Actin filament-binding 95.0 0.038 8.3E-07 59.1 5.5 52 84-135 932-990 (1629)
27 KOG3553 Tax interaction protei 94.8 0.019 4.1E-07 47.5 2.2 32 103-135 57-88 (124)
28 PRK10779 zinc metallopeptidase 94.7 0.12 2.6E-06 49.0 7.7 57 106-169 222-279 (449)
29 KOG3209 WW domain-containing p 94.4 0.17 3.6E-06 53.0 8.3 86 80-169 893-983 (984)
30 KOG3550 Receptor targeting pro 94.3 0.16 3.4E-06 44.8 6.8 76 87-166 92-172 (207)
31 TIGR01713 typeII_sec_gspC gene 94.1 0.12 2.7E-06 46.4 6.1 67 95-168 179-249 (259)
32 TIGR00054 RIP metalloprotease 94.1 0.11 2.4E-06 49.0 6.0 58 105-169 203-261 (420)
33 KOG3580 Tight junction protein 93.7 0.061 1.3E-06 55.4 3.5 43 93-136 417-459 (1027)
34 KOG3532 Predicted protein kina 93.6 0.15 3.3E-06 53.2 6.3 73 91-170 384-456 (1051)
35 COG3975 Predicted protease wit 92.8 0.14 3E-06 51.5 4.4 40 95-136 453-492 (558)
36 KOG3938 RGS-GAIP interacting p 92.7 0.4 8.7E-06 45.3 7.1 76 89-168 133-210 (334)
37 TIGR00054 RIP metalloprotease 92.3 0.2 4.4E-06 47.3 4.8 56 105-167 128-183 (420)
38 PRK10779 zinc metallopeptidase 92.2 0.18 3.9E-06 47.8 4.3 56 106-168 127-184 (449)
39 KOG3606 Cell polarity protein 92.1 0.44 9.5E-06 45.3 6.5 69 92-164 170-249 (358)
40 KOG3580 Tight junction protein 91.9 0.27 5.7E-06 51.0 5.2 76 92-171 197-281 (1027)
41 KOG3605 Beta amyloid precursor 91.3 0.12 2.6E-06 53.3 2.2 56 81-136 643-704 (829)
42 KOG3209 WW domain-containing p 90.8 0.63 1.4E-05 48.9 6.7 79 85-169 649-736 (984)
43 KOG3542 cAMP-regulated guanine 90.5 0.17 3.8E-06 52.9 2.4 48 87-135 537-591 (1283)
44 COG0265 DegQ Trypsin-like seri 90.0 0.83 1.8E-05 41.3 6.2 58 106-171 271-330 (347)
45 KOG3129 26S proteasome regulat 90.0 0.4 8.7E-06 43.7 4.0 69 106-181 140-210 (231)
46 TIGR03279 cyano_FeS_chp putati 86.7 0.91 2E-05 44.4 4.4 50 109-167 2-51 (433)
47 TIGR02860 spore_IV_B stage IV 85.0 1.6 3.5E-05 42.3 5.1 65 94-168 97-170 (402)
48 PF14685 Tricorn_PDZ: Tricorn 83.7 5.9 0.00013 30.8 6.8 69 95-170 3-81 (88)
49 KOG3651 Protein kinase C, alph 83.4 9.4 0.0002 37.1 9.4 124 95-224 18-152 (429)
50 KOG3552 FERM domain protein FR 82.9 3 6.4E-05 45.2 6.4 74 87-168 59-132 (1298)
51 PF04495 GRASP55_65: GRASP55/6 75.7 13 0.00029 30.8 6.9 69 93-168 26-101 (138)
52 PF11874 DUF3394: Domain of un 71.2 5.3 0.00011 35.2 3.7 40 95-136 113-152 (183)
53 COG3031 PulC Type II secretory 62.7 10 0.00023 35.5 4.0 62 92-168 204-265 (275)
54 COG3480 SdrC Predicted secrete 61.4 23 0.00049 34.2 6.1 69 91-172 121-191 (342)
55 PF01436 NHL: NHL repeat; Int 59.5 10 0.00022 23.1 2.4 19 91-111 1-19 (28)
56 PLN00207 polyribonucleotide nu 58.1 54 0.0012 35.2 8.7 50 124-184 108-165 (891)
57 PRK09681 putative type II secr 57.7 31 0.00068 32.1 6.2 65 97-167 196-264 (276)
58 cd03701 IF2_IF5B_II IF2_IF5B_I 57.5 17 0.00036 28.1 3.8 35 95-135 2-38 (95)
59 KOG3551 Syntrophins (type beta 53.0 19 0.00042 36.0 4.2 66 87-156 86-157 (506)
60 KOG3549 Syntrophins (type gamm 52.4 36 0.00077 33.9 5.9 80 81-164 50-135 (505)
61 smart00652 eIF1a eukaryotic tr 48.5 55 0.0012 25.1 5.3 46 85-132 5-52 (83)
62 PRK03760 hypothetical protein; 46.8 39 0.00085 27.3 4.5 36 92-131 78-113 (117)
63 cd03702 IF2_mtIF2_II This fami 46.3 29 0.00063 27.1 3.6 44 95-145 2-49 (95)
64 COG0361 InfA Translation initi 45.4 42 0.00092 25.9 4.2 57 85-150 7-67 (75)
65 PRK04012 translation initiatio 45.0 66 0.0014 25.7 5.5 52 85-145 21-74 (100)
66 KOG1320 Serine protease [Postt 43.6 65 0.0014 32.3 6.3 59 106-171 399-458 (473)
67 KOG1738 Membrane-associated gu 43.4 24 0.00051 36.6 3.3 85 82-170 199-286 (638)
68 cd04456 S1_IF1A_like S1_IF1A_l 42.9 36 0.00078 25.9 3.5 46 90-144 5-52 (78)
69 PRK14533 groES co-chaperonin G 40.4 48 0.001 26.0 3.9 27 107-134 38-64 (91)
70 cd05793 S1_IF1A S1_IF1A: Trans 40.0 81 0.0018 23.9 5.0 36 101-145 18-53 (77)
71 PTZ00414 10 kDa heat shock pro 38.6 49 0.0011 26.6 3.8 24 108-132 48-71 (100)
72 PF01176 eIF-1a: Translation i 37.1 55 0.0012 23.6 3.6 45 86-132 4-50 (65)
73 PRK00364 groES co-chaperonin G 37.0 54 0.0012 25.5 3.8 11 123-133 58-68 (95)
74 cd03703 aeIF5B_II aeIF5B_II: T 33.9 63 0.0014 26.4 3.8 33 96-134 3-37 (110)
75 PF02643 DUF192: Uncharacteriz 32.8 25 0.00055 27.5 1.4 27 103-131 79-105 (108)
76 cd00320 cpn10 Chaperonin 10 Kd 32.4 81 0.0017 24.4 4.1 29 106-134 36-68 (93)
77 TIGR00739 yajC preprotein tran 32.4 31 0.00067 26.5 1.7 41 123-168 37-77 (84)
78 COG1430 Uncharacterized conser 31.5 69 0.0015 26.7 3.7 40 93-134 82-121 (126)
79 PF03829 PTSIIA_gutA: PTS syst 28.4 98 0.0021 25.3 4.1 51 106-167 39-90 (117)
80 KOG1421 Predicted signaling-as 27.7 81 0.0018 33.9 4.3 32 103-136 301-332 (955)
81 PRK05896 DNA polymerase III su 27.7 47 0.001 34.0 2.6 88 123-223 497-598 (605)
82 PRK06531 yajC preprotein trans 25.7 50 0.0011 27.1 1.9 41 123-168 36-77 (113)
83 CHL00113 rps4 ribosomal protei 25.4 38 0.00082 29.9 1.3 31 174-211 44-74 (201)
84 cd05706 S1_Rrp5_repeat_sc10 S1 25.0 50 0.0011 22.9 1.6 42 93-134 15-58 (73)
85 TIGR02604 Piru_Ver_Nterm putat 24.8 1.4E+02 0.0031 27.4 4.9 45 91-138 13-57 (367)
86 cd05696 S1_Rrp5_repeat_hs4 S1_ 24.6 48 0.001 23.6 1.5 43 91-133 12-56 (71)
87 TIGR03095 rusti_cyanin rusticy 24.1 1.1E+02 0.0023 25.6 3.6 43 91-133 6-65 (148)
88 PF07197 DUF1409: Protein of u 23.5 38 0.00083 24.6 0.8 17 188-204 12-28 (51)
89 TIGR00523 eIF-1A eukaryotic/ar 23.3 2.2E+02 0.0047 22.7 5.1 46 85-132 19-66 (99)
90 cd05704 S1_Rrp5_repeat_hs13 S1 22.2 40 0.00086 24.1 0.7 46 89-134 12-59 (72)
91 COG4043 Preprotein translocase 21.6 83 0.0018 26.2 2.5 37 119-155 29-65 (111)
92 COG4810 EutS Ethanolamine util 21.4 97 0.0021 25.9 2.8 64 91-157 38-103 (121)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.79 E-value=2.2e-08 Score=71.86 Aligned_cols=74 Identities=23% Similarity=0.618 Sum_probs=60.0
Q ss_pred EEEecC----cceeEEeeeCCC---CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCc
Q 026827 88 EVEIEQ----PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (232)
Q Consensus 88 eVeL~K----PLGL~Fee~~dG---gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGp 160 (232)
+|+|.| |+|+.+..+.+. ++||.+|.|+|.|+++| |++||+|+.+... .+ .....-+++.+|+...++
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~---~v-~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQ---SV-RGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTE---ES-TTSBHHHHHHHHHHSTSE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCE---eC-CCCCHHHHHHHHHCCCCc
Confidence 355555 999999998775 99999999999999999 9999999998763 22 222455788899988889
Q ss_pred eEEEEe
Q 026827 161 LLMKMQ 166 (232)
Q Consensus 161 v~LkLe 166 (232)
|.|+++
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999875
No 2
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.32 E-value=4.7e-06 Score=58.49 Aligned_cols=67 Identities=22% Similarity=0.568 Sum_probs=54.2
Q ss_pred cCcceeEEeeeCC--CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeecc--chhhHHHHhhcccCceEEEE
Q 026827 92 EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKM 165 (232)
Q Consensus 92 ~KPLGL~Fee~~d--GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~--~~G~t~~AIr~RsGpv~LkL 165 (232)
.+|+|+.+....+ .+++|..|.+++.|+++| |++||+|+.+-.. +.. .+.++..+++...+++.|.+
T Consensus 11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~------~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGV------SVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCE------EcCccCHHHHHHHHHhCCCeEEEEE
Confidence 4679999988754 699999999999999988 9999999997652 444 66778888887666777765
No 3
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.21 E-value=7e-06 Score=56.55 Aligned_cols=66 Identities=21% Similarity=0.474 Sum_probs=51.9
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccch--hhHHHHhhccc-CceEEEE
Q 026827 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRV-GPLLMKM 165 (232)
Q Consensus 93 KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~--G~t~~AIr~Rs-Gpv~LkL 165 (232)
.|+|+.+....+++++|..|.+++.|+++| |++||+|+.+-.. +..+. .++...|+... .++.|++
T Consensus 1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGT------DVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 478999998777799999999999999988 9999999998542 33333 56777888655 5667665
No 4
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.06 E-value=1.8e-05 Score=57.30 Aligned_cols=67 Identities=22% Similarity=0.409 Sum_probs=51.1
Q ss_pred ceeEEeeeCC-CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhh--cccCceEEEEeec
Q 026827 95 YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQKR 168 (232)
Q Consensus 95 LGL~Fee~~d-GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr--~RsGpv~LkLeR~ 168 (232)
||+.|....+ ++++|.+|.+++.|+++| |++||+|+++-.. +..+..+....|. ..-.++.|++.|.
T Consensus 3 lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~l~~~~~g~~v~l~v~R~ 72 (82)
T PF13180_consen 3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGK------PVNSSEDLVNILSKGKPGDTVTLTVLRD 72 (82)
T ss_dssp -SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTE------ESSSHHHHHHHHHCSSTTSEEEEEEEET
T ss_pred ECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCE------EcCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 6889998765 699999999999999999 9999999997653 2345556666664 2236789999994
No 5
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.06 E-value=4e-05 Score=53.44 Aligned_cols=74 Identities=24% Similarity=0.532 Sum_probs=51.7
Q ss_pred EEEecCc---ceeEEeeeCC--CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchh--hHHHHhhcccCc
Q 026827 88 EVEIEQP---YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGP 160 (232)
Q Consensus 88 eVeL~KP---LGL~Fee~~d--GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G--~t~~AIr~RsGp 160 (232)
.+++.|+ +|+.+..... .+++|..|.+++.|+++| |++||+|+.+-.. +..+.- .....++....+
T Consensus 4 ~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~------~v~~~~~~~~~~~~~~~~~~ 76 (85)
T smart00228 4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGT------SVEGLTHLEAVDLLKKAGGK 76 (85)
T ss_pred EEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCe
Confidence 4444444 8888887644 689999999999999999 9999999998642 222222 223333333348
Q ss_pred eEEEEeec
Q 026827 161 LLMKMQKR 168 (232)
Q Consensus 161 v~LkLeR~ 168 (232)
+.|.+.|+
T Consensus 77 ~~l~i~r~ 84 (85)
T smart00228 77 VTLTVLRG 84 (85)
T ss_pred EEEEEEeC
Confidence 88888874
No 6
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=97.77 E-value=0.00013 Score=72.50 Aligned_cols=89 Identities=22% Similarity=0.413 Sum_probs=70.0
Q ss_pred hccccEEEEEecC---c-ceeEEee----eCCCCeEEEEeCCCCCcccccccccCcEEEEeecc-cCCceeeccchhhHH
Q 026827 81 EEKYEEYEVEIEQ---P-YGLKFAK----GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTM 151 (232)
Q Consensus 81 ~~~~eeyeVeL~K---P-LGL~Fee----~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~-FGdElWpA~~~G~t~ 151 (232)
-|..+-++|+|.= | |||.+-- .-||||||.+|.+||.-++.|.|.+||.|+.|-.+ |+. |=.. +-=+++
T Consensus 245 smslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFEN-mSNd-~AVrvL 322 (626)
T KOG3571|consen 245 SMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFEN-MSND-QAVRVL 322 (626)
T ss_pred ccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhh-cCch-HHHHHH
Confidence 3778889998863 5 9987763 35889999999999999999999999999999875 542 2222 222566
Q ss_pred HHhhcccCceEEEEeecCCc
Q 026827 152 YTIRQRVGPLLMKMQKRYGK 171 (232)
Q Consensus 152 ~AIr~RsGpv~LkLeR~~~~ 171 (232)
--|-+|.||+.|...+++-+
T Consensus 323 REaV~~~gPi~ltvAk~~DP 342 (626)
T KOG3571|consen 323 REAVSRPGPIKLTVAKCWDP 342 (626)
T ss_pred HHHhccCCCeEEEEeeccCC
Confidence 66668999999999988764
No 7
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.72 E-value=0.00014 Score=51.36 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=46.9
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEee
Q 026827 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (232)
Q Consensus 95 LGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR 167 (232)
+|+.|.. .++++.|.+|.+++.|+++| |++||+|+.+-.. +..++...+...+. ...+.|.+.|
T Consensus 3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~------~v~~~~~~l~~~~~-~~~v~l~v~r 66 (80)
T cd00990 3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGW------RVDALQDRLKEYQA-GDPVELTVFR 66 (80)
T ss_pred ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCE------EhHHHHHHHHhcCC-CCEEEEEEEE
Confidence 6888865 46789999999999999999 9999999998642 33334333433322 2467888877
No 8
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.54 E-value=0.00057 Score=48.64 Aligned_cols=66 Identities=24% Similarity=0.477 Sum_probs=49.5
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccch--hhHHHHhhcc-cCceEEEEeec
Q 026827 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQR-VGPLLMKMQKR 168 (232)
Q Consensus 95 LGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~--G~t~~AIr~R-sGpv~LkLeR~ 168 (232)
||+.|.. ++.+++|..|.+++-|+++| +++||+|+.+-.. +..+. .++...++.. ..++.|.+.|.
T Consensus 4 lG~~~~~-~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~------~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 4 IGLELKY-DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGE------PVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEE-cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCE------EcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 7888876 46789999999999999998 9999999998642 23333 4455566543 34678888885
No 9
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.39 E-value=0.00059 Score=48.60 Aligned_cols=58 Identities=19% Similarity=0.368 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcc--cCceEEEEeec
Q 026827 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (232)
Q Consensus 104 dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~R--sGpv~LkLeR~ 168 (232)
.++++|.+|.+++.|+++| |+.||+|+.+.. +++.+...+..++... ..++.|++.|.
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing------~~i~~~~~~~~~l~~~~~~~~i~l~v~r~ 82 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNG------KPVKSVADLRRALAELKPGDKVTLTVLRG 82 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECC------EECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 4589999999999999999 999999999864 3455555666666644 46788888873
No 10
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.15 E-value=0.002 Score=46.70 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=45.1
Q ss_pred CCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcc--cCceEEEEee
Q 026827 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQK 167 (232)
Q Consensus 104 dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~R--sGpv~LkLeR 167 (232)
..|++|..|.+++.|+++| |++||+|+++-. ++..++.++..++... ..++.|.+.|
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing------~~v~~~~d~~~~l~~~~~g~~v~l~v~r 67 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSING------TPITTLEDFMEALKPTKPGEVITVTVLP 67 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECC------EEcCCHHHHHHHHhcCCCCCEEEEEEEE
Confidence 4579999999999999999 999999999853 4556666677777653 3567888887
No 11
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.99 E-value=0.0041 Score=43.54 Aligned_cols=55 Identities=22% Similarity=0.480 Sum_probs=43.9
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcc-cCceEEEEee
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQK 167 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~R-sGpv~LkLeR 167 (232)
.+.|.+|.+++.|+++| |++||+|+.+-. ++..++.++.+.+... ...+.|.+.|
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing------~~i~~~~~~~~~l~~~~~~~~~l~v~r 68 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAING------QKIKSWEDLVDAVQENPGKPLTLTVER 68 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHHCCCceEEEEEEE
Confidence 58999999999999999 999999999865 3555666667777654 3467888876
No 12
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=96.54 E-value=0.0095 Score=59.31 Aligned_cols=73 Identities=22% Similarity=0.396 Sum_probs=58.0
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEeec
Q 026827 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (232)
Q Consensus 92 ~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR~ 168 (232)
.-|||+.+....++.+||+.|..||.|+++|.+.+||.|..+-.+ . .-....-++...++.-.|++++++-=.
T Consensus 133 ~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi---~-v~~~~~~e~q~~l~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 133 GEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGI---S-VANKSPEELQELLRNSRGSITFKIIPS 205 (542)
T ss_pred CCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCe---e-cccCCHHHHHHHHHhCCCcEEEEEccc
Confidence 448999999877779999999999999999999999999998753 1 122245567778886669998876444
No 13
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.45 E-value=0.014 Score=41.67 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=42.2
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc-c-cCceEEEEeec
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~-R-sGpv~LkLeR~ 168 (232)
|+.|..|.+++.|++ | |++||+|+++-. ++..++..+..++.. + ...+.|.+.|.
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~~~v~l~v~r~ 65 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDG------KPFKEAEELIDYIQSKKEGDTVKLKVKRE 65 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 699999999998885 7 999999999853 455566667777763 3 34678888874
No 14
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=96.41 E-value=0.012 Score=53.29 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=48.0
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhccc-CceEEEEeec
Q 026827 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKR 168 (232)
Q Consensus 95 LGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~Rs-Gpv~LkLeR~ 168 (232)
+|+.+.. .+++++|..|.+++.|+++| |++||+|+++-.. .+-.. .+.++...++... .++.|++.|.
T Consensus 53 lG~~~~~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~---~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~ 121 (334)
T TIGR00225 53 IGIQVGM-DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGK---SVAGM-SLDDAVALIRGKKGTKVSLEILRA 121 (334)
T ss_pred EEEEEEE-ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHhccCCCCCEEEEEEEeC
Confidence 7888866 36799999999999999999 9999999998653 22111 1234445554333 3577777774
No 15
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.31 E-value=0.013 Score=54.60 Aligned_cols=67 Identities=18% Similarity=0.416 Sum_probs=49.1
Q ss_pred ceeEEeeeC-----------CCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcc-c-Cce
Q 026827 95 YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-V-GPL 161 (232)
Q Consensus 95 LGL~Fee~~-----------dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~R-s-Gpv 161 (232)
|||.+..-. ..|++|.+|.+++.|+++| |++||+|+++-. ++..++.+...++... . ..+
T Consensus 236 lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng------~~i~~~~~~~~~l~~~~~g~~v 308 (428)
T TIGR02037 236 LGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNG------KPISSFADLRRAIGTLKPGKKV 308 (428)
T ss_pred CceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEE
Confidence 788877532 3589999999999999999 999999999864 2444555555555532 2 357
Q ss_pred EEEEeec
Q 026827 162 LMKMQKR 168 (232)
Q Consensus 162 ~LkLeR~ 168 (232)
.|++.|.
T Consensus 309 ~l~v~R~ 315 (428)
T TIGR02037 309 TLGILRK 315 (428)
T ss_pred EEEEEEC
Confidence 7777763
No 16
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.015 Score=55.17 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=60.5
Q ss_pred cEEEEEecCcc---eeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccC-c
Q 026827 85 EEYEVEIEQPY---GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-P 160 (232)
Q Consensus 85 eeyeVeL~KPL---GL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsG-p 160 (232)
.++..++...+ |+.+...+++++.|.++.+++-|+|+| |++||.|+.|- |..+-.. .+..+...||-+.| +
T Consensus 89 ~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~Id---G~~~~~~-~~~~av~~irG~~Gt~ 163 (406)
T COG0793 89 AEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKID---GKSVGGV-SLDEAVKLIRGKPGTK 163 (406)
T ss_pred HHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEEC---CEEccCC-CHHHHHHHhCCCCCCe
Confidence 34445555544 478877666999999999999999999 99999999998 3333322 23556778887665 6
Q ss_pred eEEEEeecCCc
Q 026827 161 LLMKMQKRYGK 171 (232)
Q Consensus 161 v~LkLeR~~~~ 171 (232)
|.|++.|.-+.
T Consensus 164 V~L~i~r~~~~ 174 (406)
T COG0793 164 VTLTILRAGGG 174 (406)
T ss_pred EEEEEEEcCCC
Confidence 79999998433
No 17
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.14 E-value=0.015 Score=58.77 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=52.0
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccc--hhhHHHHhhcccC-ceEEEEeec
Q 026827 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVG-PLLMKMQKR 168 (232)
Q Consensus 95 LGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~--~G~t~~AIr~RsG-pv~LkLeR~ 168 (232)
+|+.+.. .+|+++|..|.|||.|++++.|++||+|++|.. =|.++.+..+ +..+...|+...| .|.|++.|.
T Consensus 246 IGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~-~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 246 IGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQ-DGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred EEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECC-CCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4777766 467899999999999999955999999999972 1233444332 2367778885554 468888773
No 18
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.13 E-value=0.017 Score=53.80 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=45.3
Q ss_pred CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc--ccCceEEEEeec
Q 026827 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR 168 (232)
Q Consensus 105 GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~--RsGpv~LkLeR~ 168 (232)
.|++|.+|.+++.|+++| +++||+|+++.. ++..++.+...+|+. ...++.|.+.|.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing------~~V~s~~d~~~~l~~~~~g~~v~l~v~R~ 420 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQ------QPVSSVAELRKVLDRAKKGGRVALLILRG 420 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 589999999999999999 999999999864 345555556666663 246789999884
No 19
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=95.78 E-value=0.036 Score=51.72 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=45.4
Q ss_pred ceeEEeeeC--CC---CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhccc-CceEEEEeec
Q 026827 95 YGLKFAKGR--DG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKR 168 (232)
Q Consensus 95 LGL~Fee~~--dG---gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~Rs-Gpv~LkLeR~ 168 (232)
+|+.+.... +| ++.|..|.+++-|+++| |++||+|++|-.. .+=. .....+...++... .++.|.+.|.
T Consensus 87 iG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~---~v~~-~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 87 VGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGT---STEG-LSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred EEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 566665432 22 89999999999999999 9999999998753 2210 11233445555323 4577777763
No 20
>PRK10139 serine endoprotease; Provisional
Probab=95.76 E-value=0.022 Score=54.57 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=46.2
Q ss_pred CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEeec
Q 026827 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (232)
Q Consensus 105 GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR~ 168 (232)
.+++|..|.+++.|+++| +++||+|+.+-. +++..+.+.+.+|+.+..++.|.+.|.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~v~l~v~R~ 446 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNR------DRVNSIAEMRKVLAAKPAIIALQIVRG 446 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 389999999999999999 999999999863 355555666667765557889998874
No 21
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.48 E-value=0.027 Score=51.82 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=43.7
Q ss_pred CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc-c-cCceEEEEeec
Q 026827 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (232)
Q Consensus 105 GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~-R-sGpv~LkLeR~ 168 (232)
.|++|..|.+++.|+++| |++||+|+.+-. ++..+..+...++.. + -.++.|++.|.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~ 336 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDG------KDVIGAEELMDRIAETRPGSKVMVTVLRQ 336 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 589999999999999999 999999999854 344555555566653 2 34678888874
No 22
>PRK10139 serine endoprotease; Provisional
Probab=95.43 E-value=0.036 Score=53.09 Aligned_cols=57 Identities=12% Similarity=0.321 Sum_probs=41.3
Q ss_pred CCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc-cc-CceEEEEee
Q 026827 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQK 167 (232)
Q Consensus 104 dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~-Rs-Gpv~LkLeR 167 (232)
..|++|.+|.+++.|+++| |++||+|+.+-.. . ..++.++..+|.. +. ..+.|++.|
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~---~---V~s~~dl~~~l~~~~~g~~v~l~V~R 347 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGK---P---LNSFAELRSRIATTEPGTKVKLGLLR 347 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCE---E---CCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 3589999999999999999 9999999998642 3 3344455555543 33 346777766
No 23
>PRK10942 serine endoprotease; Provisional
Probab=95.19 E-value=0.07 Score=51.40 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=42.5
Q ss_pred CCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcc--cCceEEEEeec
Q 026827 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (232)
Q Consensus 104 dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~R--sGpv~LkLeR~ 168 (232)
..|++|..|.+++.|+++| |+.||+|+.+.. .++.++.+...++... -..+.|.+.|.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~ 369 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNG------KPISSFAALRAQVGTMPVGSKLTLGLLRD 369 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECC------EECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 3599999999999999999 999999999864 2444555555555432 23567777763
No 24
>PRK10898 serine endoprotease; Provisional
Probab=95.17 E-value=0.049 Score=50.35 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=41.9
Q ss_pred CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc-cc-CceEEEEeec
Q 026827 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR 168 (232)
Q Consensus 105 GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~-Rs-Gpv~LkLeR~ 168 (232)
.|++|.+|.+++.|+++| |++||+|+.+-.. +..+..+.+.++.. +. ..+.|++.|.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~------~V~s~~~l~~~l~~~~~g~~v~l~v~R~ 337 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNK------PAISALETMDQVAEIRPGSVIPVVVMRD 337 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 599999999999999999 9999999997542 33344444455543 33 3578888773
No 25
>PRK10942 serine endoprotease; Provisional
Probab=95.08 E-value=0.049 Score=52.40 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=46.0
Q ss_pred CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEeecC
Q 026827 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (232)
Q Consensus 105 GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR~~ 169 (232)
.+++|.+|.+++.|+++| +++||+|+++-. +++.++.+...+++....++.|.+.|.-
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg------~~V~s~~dl~~~l~~~~~~v~l~V~R~g 465 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQ------QPVKNIAELRKILDSKPSVLALNIQRGD 465 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 379999999999999999 999999999864 3455555556666655578889888844
No 26
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=94.99 E-value=0.038 Score=59.15 Aligned_cols=52 Identities=31% Similarity=0.592 Sum_probs=42.4
Q ss_pred ccEEEEEecCcce----eEEeeeCCC---CeEEEEeCCCCCcccccccccCcEEEEeec
Q 026827 84 YEEYEVEIEQPYG----LKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (232)
Q Consensus 84 ~eeyeVeL~KPLG----L~Fee~~dG---gvyV~eV~pGGNAaKaG~I~VGD~LvatSA 135 (232)
-+-..|+|+|==| |+-+++..- ||||..|++||.|+..|.++.||+|+.|-.
T Consensus 932 pei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG 990 (1629)
T KOG1892|consen 932 PEIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDG 990 (1629)
T ss_pred CceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecC
Confidence 3568899999866 444454221 999999999999999999999999998865
No 27
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=94.79 E-value=0.019 Score=47.45 Aligned_cols=32 Identities=28% Similarity=0.650 Sum_probs=29.2
Q ss_pred CCCCeEEEEeCCCCCcccccccccCcEEEEeec
Q 026827 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (232)
Q Consensus 103 ~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA 135 (232)
.|-||||+.|..|+-|+.+| ++.+|+|+-|..
T Consensus 57 tD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG 88 (124)
T KOG3553|consen 57 TDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNG 88 (124)
T ss_pred CCccEEEEEeccCChhhhhc-ceecceEEEecC
Confidence 35599999999999999999 999999999874
No 28
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=94.72 E-value=0.12 Score=48.98 Aligned_cols=57 Identities=19% Similarity=0.473 Sum_probs=45.0
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhccc-CceEEEEeecC
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRY 169 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~Rs-Gpv~LkLeR~~ 169 (232)
++.|.+|.+++.|+++| +++||+|+++.. +++.++.+...+++.+. .++.|.++|.-
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing------~~V~s~~dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDG------QPLTQWQTFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCCEEEEEEEECC
Confidence 58999999999999999 999999999853 45666666666776544 46788887743
No 29
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=94.41 E-value=0.17 Score=52.95 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=61.8
Q ss_pred hhccccEEEEEecC-cce--eEEeeeCCC--CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHh
Q 026827 80 QEEKYEEYEVEIEQ-PYG--LKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (232)
Q Consensus 80 ~~~~~eeyeVeL~K-PLG--L~Fee~~dG--gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AI 154 (232)
-.++..-|.|+|+| +-| ..+--++.+ ..||-.++++|-|.+.|.++|||+|+-+.. |--.-..-.+.+-.|
T Consensus 893 ~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eING----esTkgmtH~rAIelI 968 (984)
T KOG3209|consen 893 MSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEING----ESTKGMTHDRAIELI 968 (984)
T ss_pred ccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecC----cccCCCcHHHHHHHH
Confidence 34677889999986 334 444334433 899999999999999999999999999764 211122334677788
Q ss_pred hcccCceEEEEeecC
Q 026827 155 RQRVGPLLMKMQKRY 169 (232)
Q Consensus 155 r~RsGpv~LkLeR~~ 169 (232)
++.-.-|.|.|.|..
T Consensus 969 k~gg~~vll~Lr~g~ 983 (984)
T KOG3209|consen 969 KQGGRRVLLLLRRGT 983 (984)
T ss_pred HhCCeEEEEEeccCC
Confidence 876666777777653
No 30
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=94.26 E-value=0.16 Score=44.85 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=54.1
Q ss_pred EEEEecCc---ceeEEeee--CCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCce
Q 026827 87 YEVEIEQP---YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (232)
Q Consensus 87 yeVeL~KP---LGL~Fee~--~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv 161 (232)
-.|+|+|- ||..+--+ -+--|||..|-|||-|++-|.++-||+|+.|..+- +....--.....++.-.|+|
T Consensus 92 rvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvs----vege~hekavellkaa~gsv 167 (207)
T KOG3550|consen 92 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS----VEGEHHEKAVELLKAAVGSV 167 (207)
T ss_pred ceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeeccee----ecchhhHHHHHHHHHhcCcE
Confidence 56888875 44444333 23389999999999999999999999999988641 11112223456777878999
Q ss_pred EEEEe
Q 026827 162 LMKMQ 166 (232)
Q Consensus 162 ~LkLe 166 (232)
.|++.
T Consensus 168 klvvr 172 (207)
T KOG3550|consen 168 KLVVR 172 (207)
T ss_pred EEEEe
Confidence 88764
No 31
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=94.15 E-value=0.12 Score=46.35 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=47.7
Q ss_pred ceeEEeeeCC--CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc-cc-CceEEEEeec
Q 026827 95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR 168 (232)
Q Consensus 95 LGL~Fee~~d--GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~-Rs-Gpv~LkLeR~ 168 (232)
+|+.-....+ -|+.|..+.+++-|+++| |+.||+|+++-.. +..+..+.+.++.. +. ..+.|.++|.
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~------~i~~~~~~~~~l~~~~~~~~v~l~V~R~ 249 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGL------DLRDPEQAFQALQMLREETNLTLTVERD 249 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCeEEEEEEEC
Confidence 4555443222 299999999999999999 9999999998753 44455555555553 23 4689999983
No 32
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=94.14 E-value=0.11 Score=49.04 Aligned_cols=58 Identities=12% Similarity=0.276 Sum_probs=45.1
Q ss_pred CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhccc-CceEEEEeecC
Q 026827 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRY 169 (232)
Q Consensus 105 GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~Rs-Gpv~LkLeR~~ 169 (232)
-++.|.+|.+++.|+++| +++||+|+++... ++.++.++..+++... .++.+.++|.-
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~------~V~s~~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGE------KLRSWTDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhCCCCceEEEEEECC
Confidence 378999999999999999 9999999998642 4556666667776533 46888888743
No 33
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=93.66 E-value=0.061 Score=55.44 Aligned_cols=43 Identities=33% Similarity=0.695 Sum_probs=40.3
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecc
Q 026827 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (232)
Q Consensus 93 KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~ 136 (232)
+-.||.|+-++|=||||..|-.|..|++.| |+.||+|+.|.-+
T Consensus 417 dSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~v 459 (1027)
T KOG3580|consen 417 DSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTV 459 (1027)
T ss_pred CeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccc
Confidence 468999999999999999999999999999 9999999999875
No 34
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=93.63 E-value=0.15 Score=53.17 Aligned_cols=73 Identities=21% Similarity=0.367 Sum_probs=60.8
Q ss_pred ecCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEeecCC
Q 026827 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG 170 (232)
Q Consensus 91 L~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR~~~ 170 (232)
..-|.||+|.++.+--|-|..|.|..-|+|+. +++||+|+|+-. .|+...-++-..++.-.++|+.-.+|..-
T Consensus 384 ~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~------~pi~s~~q~~~~~~s~~~~~~~l~~~~~~ 456 (1051)
T KOG3532|consen 384 VSSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINN------VPIRSERQATRFLQSTTGDLTVLVERSLD 456 (1051)
T ss_pred ccCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecC------ccchhHHHHHHHHHhcccceEEEEeeccc
Confidence 35699999999888899999999999999998 999999999864 47777777777888778888766666333
No 35
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=92.81 E-value=0.14 Score=51.50 Aligned_cols=40 Identities=38% Similarity=0.641 Sum_probs=36.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecc
Q 026827 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (232)
Q Consensus 95 LGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~ 136 (232)
||+++.. ..|+..|..|.++|.|.++| |.+||+|+++...
T Consensus 453 LGl~v~~-~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 453 LGLKVKS-EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cceEecc-cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 7888877 57799999999999999999 9999999999875
No 36
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=0.4 Score=45.32 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=59.8
Q ss_pred EEecCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhh--cccCceEEEEe
Q 026827 89 VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQ 166 (232)
Q Consensus 89 VeL~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr--~RsGpv~LkLe 166 (232)
|.-.+-|||.+..+.-|++||..|.+|+=-++-..|+|||.|-++. |..|.--+-| +|...++ .|..+++|+|-
T Consensus 133 ~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiN---ge~ivG~RHY-eVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 133 VKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAIN---GESIVGKRHY-EVARMLKELPRGETFTLRLI 208 (334)
T ss_pred EecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhc---CccccchhHH-HHHHHHHhcccCCeeEEEee
Confidence 3445679999999888999999999999999988999999998876 4455555555 4555555 45778899987
Q ss_pred ec
Q 026827 167 KR 168 (232)
Q Consensus 167 R~ 168 (232)
-|
T Consensus 209 eP 210 (334)
T KOG3938|consen 209 EP 210 (334)
T ss_pred cc
Confidence 66
No 37
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=92.35 E-value=0.2 Score=47.26 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=40.1
Q ss_pred CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEee
Q 026827 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (232)
Q Consensus 105 GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR 167 (232)
-+++|.+|.+++-|+++| +++||+|+.+-.. ++.+..+....|....+++.+.+.|
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~------~v~~~~dl~~~ia~~~~~v~~~I~r 183 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGN------KIPGFKDVRQQIADIAGEPMVEILA 183 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhcccceEEEEE
Confidence 478899999999999999 9999999998653 2333333333333333777777766
No 38
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=92.24 E-value=0.18 Score=47.81 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=40.1
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhccc--CceEEEEeec
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQKR 168 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~Rs--Gpv~LkLeR~ 168 (232)
..+|.+|.|++-|+++| +++||+|+++-.. +.++..+....+..+. ..+.+++.|.
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~------~V~~~~~l~~~v~~~~~g~~v~v~v~R~ 184 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGI------ETPDWDAVRLALVSKIGDESTTITVAPF 184 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhccCCceEEEEEeC
Confidence 45799999999999999 9999999998653 4455555444444322 3477777763
No 39
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=92.07 E-value=0.44 Score=45.27 Aligned_cols=69 Identities=28% Similarity=0.571 Sum_probs=50.3
Q ss_pred cCcceeEEeeeC------CC-----CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCc
Q 026827 92 EQPYGLKFAKGR------DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (232)
Q Consensus 92 ~KPLGL~Fee~~------dG-----gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGp 160 (232)
+||||..+-.+. .| ||||..++|||=|+-+|.+.|-|.|+.|..+ ||- -+.+++|-.++-.-+-.
T Consensus 170 ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGI---EVa-GKTLDQVTDMMvANshN 245 (358)
T KOG3606|consen 170 EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI---EVA-GKTLDQVTDMMVANSHN 245 (358)
T ss_pred CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCE---Eec-cccHHHHHHHHhhcccc
Confidence 799997765442 23 9999999999999999999999999998864 332 23677766655544444
Q ss_pred eEEE
Q 026827 161 LLMK 164 (232)
Q Consensus 161 v~Lk 164 (232)
+-+.
T Consensus 246 LIiT 249 (358)
T KOG3606|consen 246 LIIT 249 (358)
T ss_pred eEEE
Confidence 4443
No 40
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=91.88 E-value=0.27 Score=50.97 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=62.0
Q ss_pred cCcceeEEeeeCC--------C-CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceE
Q 026827 92 EQPYGLKFAKGRD--------G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (232)
Q Consensus 92 ~KPLGL~Fee~~d--------G-gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~ 162 (232)
++|.++.|-..++ | .|||.+|...|=|++.|.|+.||+|+.+..+.-. -..+-++...|...-|.+.
T Consensus 197 ~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkINGtvte----NmSLtDar~LIEkS~GKL~ 272 (1027)
T KOG3580|consen 197 PGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTE----NMSLTDARKLIEKSRGKLQ 272 (1027)
T ss_pred CCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEECcEeec----cccchhHHHHHHhccCceE
Confidence 4677777776544 2 7999999999999999999999999998876443 3366678888998889999
Q ss_pred EEEeecCCc
Q 026827 163 MKMQKRYGK 171 (232)
Q Consensus 163 LkLeR~~~~ 171 (232)
|.+.|--++
T Consensus 273 lvVlRD~~q 281 (1027)
T KOG3580|consen 273 LVVLRDSQQ 281 (1027)
T ss_pred EEEEecCCc
Confidence 999997665
No 41
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=91.31 E-value=0.12 Score=53.31 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=43.3
Q ss_pred hccccEEEEEecC--cceeEEeeeCCC----CeEEEEeCCCCCcccccccccCcEEEEeecc
Q 026827 81 EEKYEEYEVEIEQ--PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (232)
Q Consensus 81 ~~~~eeyeVeL~K--PLGL~Fee~~dG----gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~ 136 (232)
+++|.|..|+=.| +||+++-|+.=| -|.|+-+..+|-|+++|++.+||+|+++..+
T Consensus 643 kE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~ 704 (829)
T KOG3605|consen 643 KENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGT 704 (829)
T ss_pred hcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCc
Confidence 4455544444433 789888886444 7889999999999999999999999998763
No 42
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=90.76 E-value=0.63 Score=48.85 Aligned_cols=79 Identities=25% Similarity=0.515 Sum_probs=58.4
Q ss_pred cEEEEEe-cCcceeEEee-eCC--C-CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeecc--chhhHHHHhh--
Q 026827 85 EEYEVEI-EQPYGLKFAK-GRD--G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIR-- 155 (232)
Q Consensus 85 eeyeVeL-~KPLGL~Fee-~~d--G-gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~--~~G~t~~AIr-- 155 (232)
.+..|.| .||.|.-|-- +.| | -+||-.|.+.|.|++.|.++.||.|+.+-.. |+. .--.+...+.
T Consensus 649 k~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~------pV~GksH~~vv~Lm~~A 722 (984)
T KOG3209|consen 649 KELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGI------PVEGKSHSEVVDLMEAA 722 (984)
T ss_pred cceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCe------eccCccHHHHHHHHHHH
Confidence 5677766 5788877664 223 2 8999999999999999999999999998763 222 2224444444
Q ss_pred cccCceEEEEeecC
Q 026827 156 QRVGPLLMKMQKRY 169 (232)
Q Consensus 156 ~RsGpv~LkLeR~~ 169 (232)
.|+|-|.|.+.|+.
T Consensus 723 ArnghV~LtVRRkv 736 (984)
T KOG3209|consen 723 ARNGHVNLTVRRKV 736 (984)
T ss_pred HhcCceEEEEeeee
Confidence 67899999998863
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.46 E-value=0.17 Score=52.95 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=39.1
Q ss_pred EEEEecC-----cceeEEeee-CCC-CeEEEEeCCCCCcccccccccCcEEEEeec
Q 026827 87 YEVEIEQ-----PYGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (232)
Q Consensus 87 yeVeL~K-----PLGL~Fee~-~dG-gvyV~eV~pGGNAaKaG~I~VGD~LvatSA 135 (232)
-+|.|.| ||=+.+--+ ..| ||||++|.||..|++.| ++-||+++.|..
T Consensus 537 RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNg 591 (1283)
T KOG3542|consen 537 RQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNG 591 (1283)
T ss_pred eeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccc
Confidence 4566666 566666654 456 99999999999999999 999999998865
No 44
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.83 Score=41.28 Aligned_cols=58 Identities=28% Similarity=0.516 Sum_probs=43.8
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhh-cccC-ceEEEEeecCCc
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVG-PLLMKMQKRYGK 171 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr-~RsG-pv~LkLeR~~~~ 171 (232)
|++|..|.+++.|+++| ++.||+|+++.. +++....+.+..+. .+.| .+.+++.|. |+
T Consensus 271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng------~~v~~~~~l~~~v~~~~~g~~v~~~~~r~-g~ 330 (347)
T COG0265 271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNG------KPVASLSDLVAAVASNRPGDEVALKLLRG-GK 330 (347)
T ss_pred ceEEEecCCCChHHHcC-CCCCCEEEEECC------EEccCHHHHHHHHhccCCCCEEEEEEEEC-CE
Confidence 59999999999999999 999999999875 34444544444444 2234 678999987 54
No 45
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=0.4 Score=43.66 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=42.9
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc--ccCceEEEEeecCCccccccccchH
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKRYGKMEQTGELSEK 181 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~--RsGpv~LkLeR~~~~~~~~~~ltek 181 (232)
-++|.+|+|++-|+++| +++||.|+....+-+..--+ +-.+- ++.+ ..-++.+++-|.-.+++. .||.+
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~---lq~i~-~~v~~~e~~~v~v~v~R~g~~v~L--~ltP~ 210 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLP---LQNIA-AVVQSNEDQIVSVTVIREGQKVVL--SLTPK 210 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchh---HHHHH-HHHHhccCcceeEEEecCCCEEEE--EeCcc
Confidence 57899999999999999 99999999966553322111 21222 2222 224566666665554432 44544
No 46
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=86.66 E-value=0.91 Score=44.44 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=34.0
Q ss_pred EEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEee
Q 026827 109 IDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (232)
Q Consensus 109 V~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR 167 (232)
|..|.|++-|+++| |++||+|+++-. ..+. ++-++.+++.. .++.|.+.+
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING---~~V~---Dw~D~~~~l~~--e~l~L~V~~ 51 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSING---VAPR---DLIDYQFLCAD--EELELEVLD 51 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECC---EECC---CHHHHHHHhcC--CcEEEEEEc
Confidence 56789999999999 999999999864 2333 33344444432 345555543
No 47
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=85.00 E-value=1.6 Score=42.32 Aligned_cols=65 Identities=17% Similarity=0.354 Sum_probs=39.3
Q ss_pred cceeEEeeeCCCCeEEEEeCC--------CCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc-ccCceEEE
Q 026827 94 PYGLKFAKGRDGGTYIDAIAP--------GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVGPLLMK 164 (232)
Q Consensus 94 PLGL~Fee~~dGgvyV~eV~p--------GGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~-RsGpv~Lk 164 (232)
|.||.+. .-||+|....+ ++.|+++| |++||+|+++-.. .+...+++ ..+++. ...++.|.
T Consensus 97 ~iGI~l~---t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~---~V~s~~DL---~~iL~~~~g~~V~Lt 166 (402)
T TIGR02860 97 SIGVKLN---TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGE---KIKNMDDL---ANLINKAGGEKLTLT 166 (402)
T ss_pred EEEEEEe---cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCE---ECCCHHHH---HHHHHhCCCCeEEEE
Confidence 4555553 23666655422 35577778 9999999998642 44444444 444442 24568888
Q ss_pred Eeec
Q 026827 165 MQKR 168 (232)
Q Consensus 165 LeR~ 168 (232)
+.|.
T Consensus 167 V~R~ 170 (402)
T TIGR02860 167 IERG 170 (402)
T ss_pred EEEC
Confidence 8774
No 48
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=83.67 E-value=5.9 Score=30.81 Aligned_cols=69 Identities=25% Similarity=0.446 Sum_probs=41.8
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcc--------ccc-ccccCcEEEEeecccCCceeeccchhhHHHHhhcccC-ceEEE
Q 026827 95 YGLKFAKGRDGGTYIDAIAPGGSAD--------KTG-MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMK 164 (232)
Q Consensus 95 LGL~Fee~~dGgvyV~eV~pGGNAa--------KaG-~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsG-pv~Lk 164 (232)
||..|.-. +|+.-|..|-+|-+.. +.| .|++||.|++|-.. +|=+..++ -.++..+.| .|.|.
T Consensus 3 LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~---~v~~~~~~---~~lL~~~agk~V~Lt 75 (88)
T PF14685_consen 3 LGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQ---PVTADANP---YRLLEGKAGKQVLLT 75 (88)
T ss_dssp -SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTE---E-BTTB-H---HHHHHTTTTSEEEEE
T ss_pred cceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCE---ECCCCCCH---HHHhcccCCCEEEEE
Confidence 78888887 6888889998874433 344 57899999998753 44444343 345665565 78999
Q ss_pred EeecCC
Q 026827 165 MQKRYG 170 (232)
Q Consensus 165 LeR~~~ 170 (232)
+.++.+
T Consensus 76 v~~~~~ 81 (88)
T PF14685_consen 76 VNRKPG 81 (88)
T ss_dssp EE-STT
T ss_pred EecCCC
Confidence 998776
No 49
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=83.40 E-value=9.4 Score=37.14 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=78.0
Q ss_pred ceeEEeeeCC--CCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEeecCCcc
Q 026827 95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172 (232)
Q Consensus 95 LGL~Fee~~d--GgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR~~~~~ 172 (232)
.||.+.-+.- .-+||+.|-++.-|++.|.|+.||.|++|.++ .+- -..--.|..+|..-.++|.+..-+--++.
T Consensus 18 iGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~---svK-GktKveVAkmIQ~~~~eV~IhyNKL~adp 93 (429)
T KOG3651|consen 18 IGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGI---SVK-GKTKVEVAKMIQVSLNEVKIHYNKLEADP 93 (429)
T ss_pred eeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecce---eec-CccHHHHHHHHHHhccceEEEehhcccCc
Confidence 4555543211 16899999999999999999999999999864 111 11122577789998999999877766665
Q ss_pred ccccccchHHHHHHh--hcCccccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026827 173 EQTGELSEKEIIRAE--RNSGVISN-------RVREIQMQNYMKKKEQKERREQDLLRVFL 224 (232)
Q Consensus 173 ~~~~~lteke~~rae--r~~G~i~~-------~~reiq~~ny~~k~e~~~qr~~~~~~~~~ 224 (232)
..+--|. =++|.. |---|++. .-|-|=-..-+-|++.+..+-..|-.||.
T Consensus 94 ~qGktLD--I~lKKvKHrvVen~ss~tADaLGLSRAILcND~LvkrleeLE~tae~Ykglv 152 (429)
T KOG3651|consen 94 TQGKTLD--ILLKKVKHRVVENVSSDTADALGLSRAILCNDPLVKRLEELEETAEFYKGLV 152 (429)
T ss_pred ccCccHH--HHHHHHHHHHHhhcccCchhhhcchhhhhcCcHHHHHHHHHHhHHHHHHHHH
Confidence 5443332 112221 11111221 23556556667777777777777766664
No 50
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=82.86 E-value=3 Score=45.21 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=61.1
Q ss_pred EEEEecCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEe
Q 026827 87 YEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ 166 (232)
Q Consensus 87 yeVeL~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLe 166 (232)
.+....--||.-|-.+ --|.|..|.+||.+. |++.+||+|+++. +|=..+.--.+|+..+|.--..|.|.+-
T Consensus 59 vq~~r~~~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN----~Epv~daprervIdlvRace~sv~ltV~ 130 (1298)
T KOG3552|consen 59 VQLQRNASLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVN----GEPVKDAPRERVIDLVRACESSVNLTVC 130 (1298)
T ss_pred hhhhccccccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEec----CcccccccHHHHHHHHHHHhhhcceEEe
Confidence 5556667788888776 689999999999976 9999999999965 4666666778999999976778999888
Q ss_pred ec
Q 026827 167 KR 168 (232)
Q Consensus 167 R~ 168 (232)
+|
T Consensus 131 qP 132 (1298)
T KOG3552|consen 131 QP 132 (1298)
T ss_pred cc
Confidence 86
No 51
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=75.67 E-value=13 Score=30.77 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=41.0
Q ss_pred CcceeEEe--eeC---CCCeEEEEeCCCCCccccccccc-CcEEEEeec-ccCCceeeccchhhHHHHhhcccCceEEEE
Q 026827 93 QPYGLKFA--KGR---DGGTYIDAIAPGGSADKTGMFQV-GDKVLATSA-VFGTEIWPAAEYGRTMYTIRQRVGPLLMKM 165 (232)
Q Consensus 93 KPLGL~Fe--e~~---dGgvyV~eV~pGGNAaKaG~I~V-GD~LvatSA-~FGdElWpA~~~G~t~~AIr~RsGpv~LkL 165 (232)
..||+.+. ... ..+.-|..|.|++-|+++| +++ .|.|+++.. .|. ..++|.....+ ....++.|.+
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~----~~~~l~~~v~~--~~~~~l~L~V 98 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD----DEDDLFELVEA--NENKPLQLYV 98 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE------STCHHHHHHHH--TTTS-EEEEE
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC----CHHHHHHHHHH--cCCCcEEEEE
Confidence 56775544 433 4488999999999999999 665 799999763 222 34455443332 3345788877
Q ss_pred eec
Q 026827 166 QKR 168 (232)
Q Consensus 166 eR~ 168 (232)
...
T Consensus 99 yns 101 (138)
T PF04495_consen 99 YNS 101 (138)
T ss_dssp EET
T ss_pred EEC
Confidence 653
No 52
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=71.20 E-value=5.3 Score=35.16 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=35.2
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecc
Q 026827 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (232)
Q Consensus 95 LGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~ 136 (232)
.||.+.+ .||.+.|+.|..|+.|+++| +.-|++|+.+..-
T Consensus 113 ~GL~l~~-e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~v~ 152 (183)
T PF11874_consen 113 AGLTLME-EGGKVIVDEVEFGSPAEKAG-IDFDWEITEVEVP 152 (183)
T ss_pred CCCEEEe-eCCEEEEEecCCCCHHHHcC-CCCCcEEEEEEec
Confidence 5788887 57899999999999999999 9999999988753
No 53
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=62.73 E-value=10 Score=35.49 Aligned_cols=62 Identities=26% Similarity=0.488 Sum_probs=40.1
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEeec
Q 026827 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (232)
Q Consensus 92 ~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR~ 168 (232)
+|=+|..|+.+.||..| +++| ++.||+.+++--. ++-+-+..-+.+..|+. ...+.|.+.|+
T Consensus 204 eki~Gyr~~pgkd~slF----------~~sg-lq~GDIavaiNnl---dltdp~~m~~llq~l~~-m~s~qlTv~R~ 265 (275)
T COG3031 204 EKIEGYRFEPGKDGSLF----------YKSG-LQRGDIAVAINNL---DLTDPEDMFRLLQMLRN-MPSLQLTVIRR 265 (275)
T ss_pred CceEEEEecCCCCcchh----------hhhc-CCCcceEEEecCc---ccCCHHHHHHHHHhhhc-CcceEEEEEec
Confidence 34455555555555444 4777 9999999998753 44444444456666664 45678888874
No 54
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=61.38 E-value=23 Score=34.25 Aligned_cols=69 Identities=16% Similarity=0.375 Sum_probs=46.2
Q ss_pred ecCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhh-HHHHhhcccCc-eEEEEeec
Q 026827 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR-TMYTIRQRVGP-LLMKMQKR 168 (232)
Q Consensus 91 L~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~-t~~AIr~RsGp-v~LkLeR~ 168 (232)
..||.-+.++ ||||..+.+++-|. |++++||.|+++-.. +....++ +-+.-..+.|+ |+++.+|.
T Consensus 121 a~~pv~~~y~-----gvyv~~v~~~~~~~--gkl~~gD~i~avdg~------~f~s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 121 AGKPVEVTYA-----GVYVLSVIDNSPFK--GKLEAGDTIIAVDGE------PFTSSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred cCCceEEEEe-----eEEEEEccCCcchh--ceeccCCeEEeeCCe------ecCCHHHHHHHHhccCCCCeEEEEEEec
Confidence 3455544443 79999999888754 789999999998753 1223443 33344466654 69999987
Q ss_pred CCcc
Q 026827 169 YGKM 172 (232)
Q Consensus 169 ~~~~ 172 (232)
.++.
T Consensus 188 ~~~~ 191 (342)
T COG3480 188 NETP 191 (342)
T ss_pred cCCC
Confidence 7664
No 55
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=59.46 E-value=10 Score=23.09 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=16.2
Q ss_pred ecCcceeEEeeeCCCCeEEEE
Q 026827 91 IEQPYGLKFAKGRDGGTYIDA 111 (232)
Q Consensus 91 L~KPLGL~Fee~~dGgvyV~e 111 (232)
+..|.||.+. .+|.+||.+
T Consensus 1 f~~P~gvav~--~~g~i~VaD 19 (28)
T PF01436_consen 1 FNYPHGVAVD--SDGNIYVAD 19 (28)
T ss_dssp BSSEEEEEEE--TTSEEEEEE
T ss_pred CcCCcEEEEe--CCCCEEEEE
Confidence 3579999998 799999987
No 56
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=58.09 E-value=54 Score=35.21 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=28.7
Q ss_pred cccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEE-EeecCCc-------cccccccchHHHH
Q 026827 124 FQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK-MQKRYGK-------MEQTGELSEKEII 184 (232)
Q Consensus 124 I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~Lk-LeR~~~~-------~~~~~~lteke~~ 184 (232)
++-||+++.++++..++.-+-.+| =|++.. .||.|+- +..+++-+|+|++
T Consensus 108 v~~g~t~vl~t~~~~~~~~~~~dF-----------~PLtV~y~Ek~~AaGkipggf~kREgrp~d~eiL 165 (891)
T PLN00207 108 VTDGETIVYTSVCLADVPSEPSDF-----------FPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVL 165 (891)
T ss_pred EEECCeEEEEEEEeccCCCCCCCc-----------cceeEeeeeehhhcCccCCceeccCCCCChHHHH
Confidence 355999999999876553332222 144443 2333321 2455778888864
No 57
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=57.73 E-value=31 Score=32.09 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=44.3
Q ss_pred eEEeee-CCCCeEEEEeCCCCCc---ccccccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEee
Q 026827 97 LKFAKG-RDGGTYIDAIAPGGSA---DKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (232)
Q Consensus 97 L~Fee~-~dGgvyV~eV~pGGNA---aKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR 167 (232)
|.|..- .|| +.==.|.||+++ ...| ++.||+++++-.. +|=+.....++|..++. ...++|.++|
T Consensus 196 i~lsPv~~~G-l~GYrl~Pgkd~~lF~~~G-Lq~GDva~sING~---dL~D~~qa~~l~~~L~~-~tei~ltVeR 264 (276)
T PRK09681 196 IQLTPVRKEG-IVGYAVKPGADRSLFDASG-FKEGDIAIALNQQ---DFTDPRAMIALMRQLPS-MDSIQLTVLR 264 (276)
T ss_pred EEEEEEeeCC-ceEEEECCCCcHHHHHHcC-CCCCCEEEEeCCe---eCCCHHHHHHHHHHhcc-CCeEEEEEEE
Confidence 445553 344 544567888776 4677 9999999999865 44444444456666665 5678999998
No 58
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=57.54 E-value=17 Score=28.05 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=26.5
Q ss_pred ceeEEeeeC-CC-CeEEEEeCCCCCcccccccccCcEEEEeec
Q 026827 95 YGLKFAKGR-DG-GTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (232)
Q Consensus 95 LGL~Fee~~-dG-gvyV~eV~pGGNAaKaG~I~VGD~LvatSA 135 (232)
-|.++|... .| |.+.+-|. +.|.+++||.|++=++
T Consensus 2 ~g~ViE~~~~~g~G~vatviV------~~GtL~~Gd~iv~G~~ 38 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIV------QNGTLKKGDVIVAGGT 38 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEE------EcCeEecCCEEEECCc
Confidence 377788763 34 88888888 6677999999998653
No 59
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=52.95 E-value=19 Score=35.98 Aligned_cols=66 Identities=24% Similarity=0.455 Sum_probs=50.9
Q ss_pred EEEEecC----cceeEEeeeCCC--CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhc
Q 026827 87 YEVEIEQ----PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (232)
Q Consensus 87 yeVeL~K----PLGL~Fee~~dG--gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~ 156 (232)
-.|.+-| =|||.+.-+++. -|.|..|-+|=.|+.++.+-+||.|+.|. |.++-+| .-.+...+++.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVN---G~dL~~A-tHdeAVqaLKr 157 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVN---GEDLRDA-THDEAVQALKR 157 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEec---chhhhhc-chHHHHHHHHh
Confidence 5566655 378888876544 89999999999999999999999999876 5577776 45555666663
No 60
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=52.36 E-value=36 Score=33.88 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=56.6
Q ss_pred hccccEEEEEecCc----ceeEEeeeCCC--CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHh
Q 026827 81 EEKYEEYEVEIEQP----YGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (232)
Q Consensus 81 ~~~~eeyeVeL~KP----LGL~Fee~~dG--gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AI 154 (232)
+|..+|-+|+|.+- |||.+.-+..- -|.|..|-++-.|+.+|++=|||-|+.|... -..+-.-..+...+
T Consensus 50 p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi----~v~~c~HeevV~iL 125 (505)
T KOG3549|consen 50 PMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGI----YVTACPHEEVVNIL 125 (505)
T ss_pred CccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccE----EeecCChHHHHHHH
Confidence 45667788888763 55666554332 7899999999999999999999999998753 23333444566667
Q ss_pred hcccCceEEE
Q 026827 155 RQRVGPLLMK 164 (232)
Q Consensus 155 r~RsGpv~Lk 164 (232)
|.--.-|+|.
T Consensus 126 RNAGdeVtlT 135 (505)
T KOG3549|consen 126 RNAGDEVTLT 135 (505)
T ss_pred HhcCCEEEEE
Confidence 7655555664
No 61
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=48.48 E-value=55 Score=25.09 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=32.1
Q ss_pred cEEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEE
Q 026827 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (232)
Q Consensus 85 eeyeVeL~KPLG--L~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~Lva 132 (232)
++....+.+.+| +.--+..||..++..|...=- +.=-|+.||.|+-
T Consensus 5 ~q~~g~V~~~lG~~~~~V~~~dG~~~la~ipgK~R--k~iwI~~GD~VlV 52 (83)
T smart00652 5 GQEIAQVVKMLGNGRLEVMCADGKERLARIPGKMR--KKVWIRRGDIVLV 52 (83)
T ss_pred CcEEEEEEEEcCCCEEEEEECCCCEEEEEEchhhc--ccEEEcCCCEEEE
Confidence 346677777777 333355789888888874433 4556899999987
No 62
>PRK03760 hypothetical protein; Provisional
Probab=46.78 E-value=39 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=24.7
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEE
Q 026827 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131 (232)
Q Consensus 92 ~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~Lv 131 (232)
-+|.- +-....+-.||-|+.. |-+++.| |++||+|.
T Consensus 78 ~~P~~--~~~~~~~a~~VLEl~a-G~~~~~g-i~~Gd~v~ 113 (117)
T PRK03760 78 LKPWR--IYVPKKPARYIIEGPV-GKIRVLK-VEVGDEIE 113 (117)
T ss_pred CCCcc--ccCCCccceEEEEeCC-ChHHHcC-CCCCCEEE
Confidence 36653 2333456789999875 4556777 99999995
No 63
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=46.29 E-value=29 Score=27.05 Aligned_cols=44 Identities=23% Similarity=0.524 Sum_probs=29.8
Q ss_pred ceeEEeeeCC-C-CeEEEEeCCCCCcccccccccCcEEEEeecccC--Cceeecc
Q 026827 95 YGLKFAKGRD-G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG--TEIWPAA 145 (232)
Q Consensus 95 LGL~Fee~~d-G-gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FG--dElWpA~ 145 (232)
-|+++|...| | |.+.+-|. +.|.+++||.|++=++ +| ..||+..
T Consensus 2 ~g~VlE~~~~~g~G~vatviV------~~GtL~~Gd~iv~G~~-~gkVr~l~d~~ 49 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLV------QNGTLKVGDVLVAGTT-YGKVRAMFDEN 49 (95)
T ss_pred eEEEEEEEecCCCCccEEEEE------EcCeEeCCCEEEEccc-ccEEEEEECCC
Confidence 3777877633 4 77777777 5677999999998653 45 3344443
No 64
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=45.38 E-value=42 Score=25.92 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=36.3
Q ss_pred cEEEEEecCcce---eEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeecc-chhhH
Q 026827 85 EEYEVEIEQPYG---LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA-EYGRT 150 (232)
Q Consensus 85 eeyeVeL~KPLG---L~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~-~~G~t 150 (232)
.+.+=++.+.|| +.+. -.||.....-|.-...=.+- .|.+||+|+- ++||.+ .-|++
T Consensus 7 ~e~~g~V~e~L~~~~f~v~-~edg~~~~ahI~GKmr~~~i-~I~~GD~V~V-------e~~~~d~~kg~I 67 (75)
T COG0361 7 IEMEGTVIEMLPNGRFRVE-LENGHERLAHISGKMRKNRI-RILPGDVVLV-------ELSPYDLTKGRI 67 (75)
T ss_pred cEEEEEEEEecCCCEEEEE-ecCCcEEEEEccCcchheeE-EeCCCCEEEE-------EecccccccccE
Confidence 446666777777 3333 36777777777644442233 4889999987 788876 44443
No 65
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=45.04 E-value=66 Score=25.69 Aligned_cols=52 Identities=23% Similarity=0.183 Sum_probs=34.3
Q ss_pred cEEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeecc
Q 026827 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145 (232)
Q Consensus 85 eeyeVeL~KPLG--L~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~ 145 (232)
++....+.+.+| +.--+..||..++..|...= -+.--|.+||.|+. ++|+.+
T Consensus 21 ~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~--Rk~IwI~~GD~VlV-------e~~~~~ 74 (100)
T PRK04012 21 GEVFGVVEQMLGANRVRVRCMDGVERMGRIPGKM--KKRMWIREGDVVIV-------APWDFQ 74 (100)
T ss_pred CEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhh--cccEEecCCCEEEE-------EecccC
Confidence 456777777776 33335568888887777332 24446889999887 567764
No 66
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.57 E-value=65 Score=32.29 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=45.3
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhccc-CceEEEEeecCCc
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRYGK 171 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~Rs-Gpv~LkLeR~~~~ 171 (232)
+|+|.+|-|++-+...+ ++.||+|+++... ++.....++.+|+.-+ ++....|.|+..+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~------~V~n~~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGK------PVKNLKHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCE------EeechHHHHHHHHhcCcCceEEEEEecCcc
Confidence 69999999999998887 9999999998764 5566777788888433 4456667776554
No 67
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=43.43 E-value=24 Score=36.64 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=57.5
Q ss_pred ccccEEEEEecCc---ceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhhHHHHhhccc
Q 026827 82 EKYEEYEVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (232)
Q Consensus 82 ~~~eeyeVeL~KP---LGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~Rs 158 (232)
.-.+.++..--|| +|+.+.-.-||-.+|..+.++.-|+....|..||.|+.+-.--+. =|.- --+...++.-.
T Consensus 199 a~Le~vqls~~kp~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvV-gwql---k~vV~sL~~~~ 274 (638)
T KOG1738|consen 199 ASLERVQLSTLSPSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVV-GWQL---KVVVSSLRETP 274 (638)
T ss_pred HHHHHHHhccCCcccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccc-cchh---HhHHhhcccCc
Confidence 3334444444488 899999999999999999999999999999999999987642110 1332 23344555444
Q ss_pred CceEEEEeecCC
Q 026827 159 GPLLMKMQKRYG 170 (232)
Q Consensus 159 Gpv~LkLeR~~~ 170 (232)
--+.+.|++++-
T Consensus 275 sgi~l~lkKrp~ 286 (638)
T KOG1738|consen 275 AGIELTLKKRPV 286 (638)
T ss_pred ccceeeeeccCC
Confidence 445555555543
No 68
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=42.94 E-value=36 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=28.8
Q ss_pred EecCcce--eEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeec
Q 026827 90 EIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPA 144 (232)
Q Consensus 90 eL~KPLG--L~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA 144 (232)
.+.+++| +.--+..||..+...|... .-+.=-|+.||.|+. ++||.
T Consensus 5 ~V~~~lG~~~~~V~~~dg~~~l~~i~gK--~Rk~iwI~~GD~VlV-------~~~~~ 52 (78)
T cd04456 5 RVLRMLGNNRHEVECADGQRRLVSIPGK--LRKNIWIKRGDFLIV-------DPIEE 52 (78)
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEchh--hccCEEEcCCCEEEE-------Eeccc
Confidence 3444554 3333446888888888743 224446899999987 56665
No 69
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=40.37 E-value=48 Score=25.99 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=16.7
Q ss_pred eEEEEeCCCCCcccccccccCcEEEEee
Q 026827 107 TYIDAIAPGGSADKTGMFQVGDKVLATS 134 (232)
Q Consensus 107 vyV~eV~pGGNAaKaG~I~VGD~LvatS 134 (232)
..|.+|.+|.. .....+++||+|++-.
T Consensus 38 G~VvavG~g~~-~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 38 AEVVAVGKLDD-EEDFDIKVGDKVIFSK 64 (91)
T ss_pred EEEEEECCCCc-cccccccCCCEEEEcc
Confidence 34555665433 2234599999999743
No 70
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=40.03 E-value=81 Score=23.86 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=24.3
Q ss_pred eeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccCCceeecc
Q 026827 101 KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145 (232)
Q Consensus 101 e~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~ 145 (232)
+..||..++..|...=. +.--|.+||.|+- ++||.+
T Consensus 18 ~~~~g~~~la~i~gK~r--k~iwI~~GD~V~V-------e~~~~d 53 (77)
T cd05793 18 RCFDGKKRLCRIRGKMR--KRVWINEGDIVLV-------APWDFQ 53 (77)
T ss_pred EECCCCEEEEEEchhhc--ccEEEcCCCEEEE-------Eecccc
Confidence 44678787777774433 4446889999887 467664
No 71
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=38.60 E-value=49 Score=26.63 Aligned_cols=24 Identities=33% Similarity=0.327 Sum_probs=14.6
Q ss_pred EEEEeCCCCCcccccccccCcEEEE
Q 026827 108 YIDAIAPGGSADKTGMFQVGDKVLA 132 (232)
Q Consensus 108 yV~eV~pGGNAaKaG~I~VGD~Lva 132 (232)
-|.+|.+|.... ...|++||+|++
T Consensus 48 ~VvAVG~G~~~~-~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 48 TVVAVAAATKDW-TPTVKVGDTVLL 71 (100)
T ss_pred EEEEECCCCccc-cceecCCCEEEE
Confidence 344555553221 335999999997
No 72
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=37.09 E-value=55 Score=23.56 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=27.4
Q ss_pred EEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEE
Q 026827 86 EYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (232)
Q Consensus 86 eyeVeL~KPLG--L~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~Lva 132 (232)
+....+.+++| +.--+..||..++..|... --+.=-|+.||.|+-
T Consensus 4 e~~~~V~~~lG~~~~~V~~~dg~~~l~~i~gK--~r~~iwI~~GD~V~V 50 (65)
T PF01176_consen 4 EVIGRVTEMLGNNLFEVECEDGEERLARIPGK--FRKRIWIKRGDFVLV 50 (65)
T ss_dssp EEEEEEEEEESSSEEEEEETTSEEEEEEE-HH--HHTCC---TTEEEEE
T ss_pred EEEEEEEEECCCCEEEEEeCCCCEEEEEeccc--eeeeEecCCCCEEEE
Confidence 45566667777 3333457888888888744 444446899999876
No 73
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=37.00 E-value=54 Score=25.51 Aligned_cols=11 Identities=55% Similarity=0.622 Sum_probs=9.2
Q ss_pred ccccCcEEEEe
Q 026827 123 MFQVGDKVLAT 133 (232)
Q Consensus 123 ~I~VGD~Lvat 133 (232)
.|++||+|++-
T Consensus 58 ~vk~GD~Vlf~ 68 (95)
T PRK00364 58 DVKVGDKVLFG 68 (95)
T ss_pred ccCCCCEEEEc
Confidence 58999999974
No 74
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=33.91 E-value=63 Score=26.36 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=24.0
Q ss_pred eeEEeee-CCC-CeEEEEeCCCCCcccccccccCcEEEEee
Q 026827 96 GLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (232)
Q Consensus 96 GL~Fee~-~dG-gvyV~eV~pGGNAaKaG~I~VGD~LvatS 134 (232)
|.++|-. ..| |..++-|. ..|.+++||+|+..+
T Consensus 3 gtVlEvk~~~G~G~t~dvIl------~~GtL~~GD~Iv~g~ 37 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVIL------YDGTLREGDTIVVCG 37 (110)
T ss_pred EEEEEEEEcCCCceEEEEEE------ECCeEecCCEEEEcc
Confidence 5566654 334 77778887 455699999999877
No 75
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=32.80 E-value=25 Score=27.52 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=17.2
Q ss_pred CCCCeEEEEeCCCCCcccccccccCcEEE
Q 026827 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVL 131 (232)
Q Consensus 103 ~dGgvyV~eV~pGGNAaKaG~I~VGD~Lv 131 (232)
..+.-||-|+.+| .+++-| |++||+|.
T Consensus 79 ~~~a~~vLE~~aG-~~~~~~-i~~Gd~v~ 105 (108)
T PF02643_consen 79 YKPARYVLELPAG-WFEKLG-IKVGDRVR 105 (108)
T ss_dssp CCEECEEEEEETT-HHHHHT---TT-EEE
T ss_pred CCccCEEEEcCCC-chhhcC-CCCCCEEE
Confidence 3456788888765 456677 99999986
No 76
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=32.45 E-value=81 Score=24.40 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=16.4
Q ss_pred CeEEEEeCCCCCc----ccccccccCcEEEEee
Q 026827 106 GTYIDAIAPGGSA----DKTGMFQVGDKVLATS 134 (232)
Q Consensus 106 gvyV~eV~pGGNA----aKaG~I~VGD~LvatS 134 (232)
...|.+|.||--. .....+++||+|++--
T Consensus 36 ~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 36 EGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred EEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 3445556655211 1123599999999744
No 77
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=32.42 E-value=31 Score=26.45 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=25.5
Q ss_pred ccccCcEEEEeecccCCceeeccchhhHHHHhhcccCceEEEEeec
Q 026827 123 MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (232)
Q Consensus 123 ~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~RsGpv~LkLeR~ 168 (232)
.+++||.|+-+|..+|.-+.-.+++ --+.. +..+.+++.|.
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~----v~vei-~~g~~i~~~r~ 77 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENT----IVIEL-NDNTEITFSKN 77 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCE----EEEEE-CCCeEEEEEhH
Confidence 4899999999999999533332222 12222 23367777763
No 78
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=31.48 E-value=69 Score=26.71 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=24.4
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEee
Q 026827 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (232)
Q Consensus 93 KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatS 134 (232)
+|....--....+.-||-|+..| -+++.+ |+|||+|....
T Consensus 82 ~P~~~~~~~~~~~~~yvLEl~~G-~~~~~~-i~vGd~v~~~~ 121 (126)
T COG1430 82 VPWSTYPCKSYGPVRYVLELPAG-WAARLG-IKVGDRVEFRP 121 (126)
T ss_pred cccccCCCCCCCCccEEEEecCC-chhhcC-CccCCEEEecc
Confidence 44443333333333688888754 445566 99999997643
No 79
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=28.36 E-value=98 Score=25.26 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=31.0
Q ss_pred CeEEEEeCCCCCcccccccccCcEEEEeecccCCceeeccchhh-HHHHhhcccCceEEEEee
Q 026827 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR-TMYTIRQRVGPLLMKMQK 167 (232)
Q Consensus 106 gvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FGdElWpA~~~G~-t~~AIr~RsGpv~LkLeR 167 (232)
..|++.+. .-.+.|++||+|. +|+.-|.+..+|. +...++. .|-++|+|.-
T Consensus 39 ~~vih~~~-----~~~~~i~~Gd~l~-----i~~~~y~ItaVG~~an~NL~~-LGH~Tl~F~g 90 (117)
T PF03829_consen 39 YCVIHTFN-----ELKGDIKPGDTLI-----IGGQEYTITAVGSVANQNLRE-LGHITLVFDG 90 (117)
T ss_dssp TCEEEE-T-----GGG----TT-EEE-----ETTEEEEEEEE-TTHHHHHHH-HS-EEEE-S-
T ss_pred EEEEEecC-----cccCCcCCCCEEE-----ECCeEEEEEEEhHHHHHHHHh-cCcEEEEECC
Confidence 67777776 2455699999997 7889999999995 4445655 7889998865
No 80
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=27.73 E-value=81 Score=33.88 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=27.7
Q ss_pred CCCCeEEEEeCCCCCcccccccccCcEEEEeecc
Q 026827 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (232)
Q Consensus 103 ~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~ 136 (232)
+-|-..|..|.++|-|+|. ++.||+|+++-..
T Consensus 301 ~tgmLvV~~vL~~gpa~k~--Le~GDillavN~t 332 (955)
T KOG1421|consen 301 RTGMLVVETVLPEGPAEKK--LEPGDILLAVNST 332 (955)
T ss_pred cceeEEEEEeccCCchhhc--cCCCcEEEEEcce
Confidence 4578899999999999976 7999999998853
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=27.70 E-value=47 Score=34.04 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=58.6
Q ss_pred ccccCcEEEEeecccCCceeeccchhh------------HHHHhhcccCceEEEEeecCCccccccccchHH--HHHHhh
Q 026827 123 MFQVGDKVLATSAVFGTEIWPAAEYGR------------TMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAER 188 (232)
Q Consensus 123 ~I~VGD~LvatSA~FGdElWpA~~~G~------------t~~AIr~RsGpv~LkLeR~~~~~~~~~~lteke--~~raer 188 (232)
.|+++|+|+++| ||--+...++.|- .+..|...-+..+++.. .|.++ ++.+.+
T Consensus 497 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 563 (605)
T PRK05896 497 IIKQADLVLWVS--PNALILGVEDLGLIELINKVNESFEFIKTIFKKFNKNKLVIA-----------ISKKQATKITNIK 563 (605)
T ss_pred HHHhhceEEEec--CCeEEEeehhhHHHHHHHHHHhhhHHHHHHHHHhccceEEee-----------eeHHhhhhhhhHh
Confidence 689999999999 7765555555552 12223333344444432 23344 577889
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026827 189 NSGVISNRVREIQMQNYMKKKEQKERREQDLLRVF 223 (232)
Q Consensus 189 ~~G~i~~~~reiq~~ny~~k~e~~~qr~~~~~~~~ 223 (232)
+-++.-.-++-.|+.+-...--+|.||.+..+.-|
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (605)
T PRK05896 564 NQKLKTNIINDVDIDDLKMLIKKEKTRKQEVDALL 598 (605)
T ss_pred hhcccchhhhHhhHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999998777777778855554443
No 82
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=25.68 E-value=50 Score=27.06 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=25.3
Q ss_pred ccccCcEEEEeecccCCceeeccc-hhhHHHHhhcccCceEEEEeec
Q 026827 123 MFQVGDKVLATSAVFGTEIWPAAE-YGRTMYTIRQRVGPLLMKMQKR 168 (232)
Q Consensus 123 ~I~VGD~LvatSA~FGdElWpA~~-~G~t~~AIr~RsGpv~LkLeR~ 168 (232)
.+++||.|+-++.++|. |-..++ .+ .+......+.+++.|.
T Consensus 36 sLk~GD~VvT~GGi~G~-V~~I~~~~~----~v~le~~gv~i~v~r~ 77 (113)
T PRK06531 36 AIQKGDEVVTIGGLYGT-VDEVDTEAK----TIVLDVDGVYLTFELA 77 (113)
T ss_pred hcCCCCEEEECCCcEEE-EEEEecCCC----EEEEEECCEEEEEEhh
Confidence 48999999999999995 333322 11 1222223477777764
No 83
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=25.43 E-value=38 Score=29.95 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=23.9
Q ss_pred cccccchHHHHHHhhcCccccchhHHHHHHHHHHHHHH
Q 026827 174 QTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQ 211 (232)
Q Consensus 174 ~~~~lteke~~raer~~G~i~~~~reiq~~ny~~k~e~ 211 (232)
++-.|-|||++|.- | |+.|-|++||.++...
T Consensus 44 y~~~L~eKqk~~~~------Y-g~~ekq~~~~~~~a~~ 74 (201)
T CHL00113 44 YRIRLEEKQKLRFN------Y-GLTERQLLKYVRIARK 74 (201)
T ss_pred HHHHHHHHHHHHHH------c-CCCHHHHHHHHHHHHh
Confidence 55578899998853 3 4789999999998653
No 84
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=24.99 E-value=50 Score=22.92 Aligned_cols=42 Identities=17% Similarity=0.032 Sum_probs=25.6
Q ss_pred CcceeEEee--eCCCCeEEEEeCCCCCcccccccccCcEEEEee
Q 026827 93 QPYGLKFAK--GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (232)
Q Consensus 93 KPLGL~Fee--~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatS 134 (232)
.+-|+.++- +.+|-+-+..+...........+++||.|.+.=
T Consensus 15 ~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V 58 (73)
T cd05706 15 NDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACV 58 (73)
T ss_pred eCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEE
Confidence 345555543 244566666666554443345689999998843
No 85
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=24.77 E-value=1.4e+02 Score=27.37 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=25.8
Q ss_pred ecCcceeEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEEeecccC
Q 026827 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138 (232)
Q Consensus 91 L~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatSA~FG 138 (232)
|.+|.+|.|.+ +|.+||.+-..-..... ..-+.||+|+.....-|
T Consensus 13 ~~~P~~ia~d~--~G~l~V~e~~~y~~~~~-~~~~~~~rI~~l~d~dg 57 (367)
T TIGR02604 13 LRNPIAVCFDE--RGRLWVAEGITYSRPAG-RQGPLGDRILILEDADG 57 (367)
T ss_pred cCCCceeeECC--CCCEEEEeCCcCCCCCC-CCCCCCCEEEEEEcCCC
Confidence 67888888854 78888887643322211 11344566666554433
No 86
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=24.56 E-value=48 Score=23.61 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=24.8
Q ss_pred ecCcceeEEeeeC--CCCeEEEEeCCCCCcccccccccCcEEEEe
Q 026827 91 IEQPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (232)
Q Consensus 91 L~KPLGL~Fee~~--dGgvyV~eV~pGGNAaKaG~I~VGD~Lvat 133 (232)
+.++.|+.++-.. +|-+-+.++...-.......+++||.|.+-
T Consensus 12 v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~k 56 (71)
T cd05696 12 VEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKAR 56 (71)
T ss_pred EccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEE
Confidence 3467887777643 333333444433222234569999999873
No 87
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=24.06 E-value=1.1e+02 Score=25.58 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=30.9
Q ss_pred ecCcceeEEeee-----CCC---CeEEEEeCCCCCcccccc---------cccCcEEEEe
Q 026827 91 IEQPYGLKFAKG-----RDG---GTYIDAIAPGGSADKTGM---------FQVGDKVLAT 133 (232)
Q Consensus 91 L~KPLGL~Fee~-----~dG---gvyV~eV~pGGNAaKaG~---------I~VGD~Lvat 133 (232)
+.|+-|++++.+ +|| .||...+.|+-+-..=.. ++.||.|.-+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~v~v~~~~~~~~~~~~~f~~~~~~~P~I~v~~Gd~V~v~ 65 (148)
T TIGR03095 6 NETDPGVQVSVSGSTIYYNNSTTLVVAAGPMPGPSMYSFEIHDLKNPTIVIPEGVTVHFT 65 (148)
T ss_pred cccCCCcEEecCCCEEEEcCCEEEEEEEEcCCCCCceeEEecCCCCCEEEEcCCCEEEEE
Confidence 457778888763 456 678888998888754442 5899998773
No 88
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=23.48 E-value=38 Score=24.60 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=14.8
Q ss_pred hcCccccchhHHHHHHH
Q 026827 188 RNSGVISNRVREIQMQN 204 (232)
Q Consensus 188 r~~G~i~~~~reiq~~n 204 (232)
-|||-|.+++.|||.+=
T Consensus 12 ~~cg~IrarleE~qa~i 28 (51)
T PF07197_consen 12 VDCGSIRARLEEIQAQI 28 (51)
T ss_pred hccchHHHHHHHHHHHh
Confidence 49999999999999653
No 89
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=23.30 E-value=2.2e+02 Score=22.68 Aligned_cols=46 Identities=28% Similarity=0.179 Sum_probs=30.4
Q ss_pred cEEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccccccCcEEEE
Q 026827 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (232)
Q Consensus 85 eeyeVeL~KPLG--L~Fee~~dGgvyV~eV~pGGNAaKaG~I~VGD~Lva 132 (232)
++....+.+.+| +.--+..||..++..|...=- +.--|..||.|+-
T Consensus 19 ~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~R--k~iwI~~GD~VlV 66 (99)
T TIGR00523 19 GEILGVIEQMLGAGRVKVRCLDGKTRLGRIPGKLK--KRIWIREGDVVIV 66 (99)
T ss_pred CEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhc--ccEEecCCCEEEE
Confidence 557777777777 333345688888877774322 4445888998886
No 90
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.17 E-value=40 Score=24.12 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=29.7
Q ss_pred EEecCcceeEEee--eCCCCeEEEEeCCCCCcccccccccCcEEEEee
Q 026827 89 VEIEQPYGLKFAK--GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (232)
Q Consensus 89 VeL~KPLGL~Fee--~~dGgvyV~eV~pGGNAaKaG~I~VGD~LvatS 134 (232)
+.+..+.|+..+- +.+|-+.+.++..+-...-...+++||.|.+.-
T Consensus 12 ~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV 59 (72)
T cd05704 12 TKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCI 59 (72)
T ss_pred EEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEE
Confidence 3444457866654 355677777776665444345689999998843
No 91
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.64 E-value=83 Score=26.17 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=24.9
Q ss_pred ccccccccCcEEEEeecccCCceeeccchhhHHHHhh
Q 026827 119 DKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (232)
Q Consensus 119 aKaG~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr 155 (232)
+|...|++||+|+......-.++-..+.|..-..+++
T Consensus 29 ~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlr 65 (111)
T COG4043 29 PKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLR 65 (111)
T ss_pred HhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHH
Confidence 4555699999999876555556666666664444554
No 92
>COG4810 EutS Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=21.39 E-value=97 Score=25.94 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=49.4
Q ss_pred ecCcceeEEeeeCCCCeEEEEeCCCCCccccc--ccccCcEEEEeecccCCceeeccchhhHHHHhhcc
Q 026827 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTG--MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (232)
Q Consensus 91 L~KPLGL~Fee~~dGgvyV~eV~pGGNAaKaG--~I~VGD~LvatSA~FGdElWpA~~~G~t~~AIr~R 157 (232)
+-|.||+. ..-|-+-|--|.|+-.|--++ .++.||+=++.=..|...+.=.-++|-|.+++++-
T Consensus 38 l~~KlGl~---~~~~AIGIlTiTP~EaaiIa~DiA~Ksg~v~iGFlDRFsGalvltGdv~aVE~aLkqv 103 (121)
T COG4810 38 LAKKLGLD---PDAGAIGILTITPGEAAIIAGDIATKSGDVHIGFLDRFSGALVLTGDVGAVEEALKQV 103 (121)
T ss_pred HHHHhCCC---CCCCceEEEEecCchhhhhhhhhhcccCceEEeeeecccceEEEEcchHHHHHHHHHH
Confidence 34567764 235678888999998877666 56889998888777888888888899888888863
Done!