BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026829
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 2 DYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNI-KEYPEFRTLPSFLFGQSLGGAVALKVH 60
D+ G G S G + F V DV++H ++ K+YP LP FL G S+GGA+A+
Sbjct: 93 DHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP---GLPVFLLGHSMGGAIAILTA 149
Query: 61 LKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIAN-ILPKHKLVPQKDLAEAAFRDL 119
++P ++G +L++P+ + F K + + N +LP L P +++
Sbjct: 150 AERPGHFAGMVLISPLVLANPESATTF--KVLAAKVLNLVLPNLSLGP----IDSSVLSR 203
Query: 120 KNRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSV 177
E+ YN ++ + ++ ++LL +ER L K+++P L+L G D + D
Sbjct: 204 NKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKG 263
Query: 178 SKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 229
+ L E A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 264 AYLLMELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINMWVSQRTATA 314
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 2 DYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNI-KEYPEFRTLPSFLFGQSLGGAVALKVH 60
D+ G G S G + F V DV++H ++ K+YP LP FL G S+GGA+A+
Sbjct: 94 DHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP---GLPVFLLGHSMGGAIAILTA 150
Query: 61 LKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIAN-ILPKHKLVPQKDLAEAAFRDL 119
++P ++G +L++P+ + F K + + N +LP L P +++
Sbjct: 151 AERPGHFAGMVLISPLVLANPESATTF--KVLAAKVLNLVLPNLSLGP----IDSSVLSR 204
Query: 120 KNRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSV 177
E+ YN ++ + ++ ++LL +ER L K+++P L+L G D + D
Sbjct: 205 NKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKG 264
Query: 178 SKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 229
+ L E A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 265 AYLLMELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINMWVSQRTATA 315
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 2 DYPGFGLSAGLHGYIPSFDRLVDDVIEHY-SNIKEYPEFRTLPSFLFGQSLGGAVALKVH 60
D+ G G S G + F V DV++H S K+YP LP FL G S GGA+A+
Sbjct: 93 DHVGHGQSEGERXVVSDFHVFVRDVLQHVDSXQKDYP---GLPVFLLGHSXGGAIAILTA 149
Query: 61 LKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIAN-ILPKHKLVPQKDLAEAAFRDL 119
++P ++G +L++P+ + F K + + N +LP L P +++
Sbjct: 150 AERPGHFAGXVLISPLVLANPESATTF--KVLAAKVLNLVLPNLSLGP----IDSSVLSR 203
Query: 120 KNRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSV 177
E+ YN ++ + ++ ++LL +ER L K+++P L+L G D + D
Sbjct: 204 NKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKG 263
Query: 178 SKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 229
+ L E A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 264 AYLLXELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINXWVSQRTATA 314
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 2 DYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNI-KEYPEFRTLPSFLFGQSLGGAVALKVH 60
D+ G G S G + F V DV++H ++ K+YP LP FL G S+GGA+A+
Sbjct: 76 DHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP---GLPVFLLGHSMGGAIAILTA 132
Query: 61 LKQPNAWSGAILVAPMCKIADDMVPPFLVKQILIGIANILPKHKLVPQKDLAEAAFRDLK 120
++P ++G +L++P+ + F V + + ++LP P +++
Sbjct: 133 AERPGHFAGMVLISPLVLANPESATTFKVLAAKV-LNSVLPNLSSGP----IDSSVLSRN 187
Query: 121 NRELTKYNV--IVYKDKPRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVS 178
E+ YN ++ + ++ ++LL +ER L K+++P L+L G D + D +
Sbjct: 188 KTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGA 247
Query: 179 KALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSRSS 229
L E A S+DK +Y+ A+H +L E ++ VF +I W+ + ++
Sbjct: 248 YLLMELAKSQDKTLKIYEGAYH-VLHKELPEVTNSVFHEINMWVSQRTATA 297
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 29/185 (15%)
Query: 18 SFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALKVHLKQPNAWSGAILVAPMC 77
+F V V E Y +K+ R F+ G S+GG + L + P+ + P+
Sbjct: 89 TFHDWVASVEEGYGWLKQ----RCQTIFVTGLSMGGTLTLYLAEHHPDICG----IVPIN 140
Query: 78 KIADDMVPPFLVKQILIGI--ANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDK 135
D + I G+ LP++ ++ DLKN ++ + + Y+
Sbjct: 141 AAVD-------IPAIAAGMTGGGELPRY--------LDSIGSDLKNPDVKE---LAYEKT 182
Query: 136 PRLRTALELLKTTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILY 195
P + L+L + + +L+++ P LI + D V P + +++ SS +K+ +
Sbjct: 183 PT-ASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRL 241
Query: 196 KDAFH 200
++++H
Sbjct: 242 RNSYH 246
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
Query: 1 MDYPGFGLSAGL--HGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVAL- 57
DY G G S G G I + V++H F+ + L G S GG +AL
Sbjct: 72 FDYSGHGASGGAFRDGTISRWLEEALAVLDH---------FKPEKAILVGSSXGGWIALR 122
Query: 58 -----KVHLKQPNAWSGAILVAPMCKIADDMVPPFL 88
K P SG +L+AP D++ P L
Sbjct: 123 LIQELKARHDNPTQVSGXVLIAPAPDFTSDLIEPLL 158
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 155 LEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSLLEGEPDDMIIRV 214
L+ +++P+L++HG++D V P + K+ K I YK A H + P +V
Sbjct: 216 LKGITIPVLVIHGDDDQVV-PYADSGVLSAKLVKNGKLITYKGAPHGI----PTTHADKV 270
Query: 215 FADIISWL 222
AD++ +L
Sbjct: 271 NADLLEFL 278
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 2 DYPGFGLSAGLHGYIPSFDRLVDDVIEHYSNIKEYPEFRTLP-SFLFGQSLGGAVALKVH 60
DYPGFG SA Y DR D+ I++Y + + S + G S GG +
Sbjct: 63 DYPGFGRSASSEKY--GIDR--GDLKHAAEFIRDYLKANGVARSVIXGASXGGGXVIXTT 118
Query: 61 LKQPNAWSGAILVAP 75
L+ P+ G I VAP
Sbjct: 119 LQYPDIVDGIIAVAP 133
>pdb|3DKR|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DLT|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYI|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYV|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3E1G|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
Length = 251
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 45 FLFGQSLGGAVALKVHLKQPNAWSGAILVAPMCKIADDMVPPFL 88
F+FG SLGG A+K P +G + +P+ +VP FL
Sbjct: 96 FVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFL 139
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 46 LFGQSLGGAVALKVHLKQPNAWSGAILVAPMCK 78
+FG S+GG AL LK P + AP+C
Sbjct: 145 IFGHSMGGHGALICALKNPGKYKSVSAFAPICN 177
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 58/226 (25%)
Query: 1 MDYPGFGLSAGLHGYI-PSFDR-----LVDDVIEHYSNIKEY--PEFRTLPSF------- 45
M PGFG + + P+F+ L D V +S+++ Y ++TL +
Sbjct: 24 MFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDV 83
Query: 46 ----------LFGQSLGGAVALKVHLKQPNAWSGAILVAPM-CKIADDMVPP-------- 86
G S+G + + +++P +S ++V P C + D PP
Sbjct: 84 CEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLND---PPEYYGGFEE 140
Query: 87 -------FLVKQILIGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLR 139
++++ IG A + ++ Q D E +L++R + VI
Sbjct: 141 EQLLGLLEMMEKNYIGWATVFAA-TVLNQPDRPEIK-EELESRFCSTDPVI--------- 189
Query: 140 TALELLKTTEGIERR--LEKVSLPLLILHGENDTVTDPSVSKALYE 183
A + K + R L KV++P LIL +D + +V K +++
Sbjct: 190 -ARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQ 234
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 44 SFLFGQSLGGAVALKVHLKQPNAWSGAILV----APMCKIADDMVPPFLVKQILIGIANI 99
S + G S+GGAV L++ ++ P + L+ APM + PP L + +
Sbjct: 105 SHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPM-----NARPPELAR-----LLAF 154
Query: 100 LPKHKLVPQKDLAEAAFRDLKN----RELTKYNVIVYKDKPRLRTALELLKTTEGIERRL 155
+L P ++L + D +N E+ K V D P +R E++ E ++ +
Sbjct: 155 YADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVAND-PEVRRIQEVM--FESMKAGM 211
Query: 156 EKVSLP----------LLILHGENDTVT 173
E + +P +L+ HG D +
Sbjct: 212 ESLVIPPATLGRLPHDVLVFHGRQDRIV 239
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 160 LPLLILHGENDTVTDPSVSKALYEKASSK 188
+P+L LHG D V DP++ +A ++ ++
Sbjct: 167 IPVLHLHGSQDDVVDPALGRAAHDALQAQ 195
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 94 IGIANILPKHKLVPQKDLAEAAFRDLKNRELTKYNVIVYKDKPRLRTALELLKTTEGIER 153
+G A +L K VP +A + D +N+ DKP L+ + + GI++
Sbjct: 32 VGPATVLAMGKAVPANVFEQATYPDFF------FNITNSNDKPALKAKFQRICDKSGIKK 85
Query: 154 R 154
R
Sbjct: 86 R 86
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 189 DKKCILYKDAFHSLLEGEPDDMIIRVFADIISWLDDHSR 227
D++ + YK F E E D M R++A+ + +++H+R
Sbjct: 7 DEEWVEYKSKFDKNYEAEEDLMRRRIYAESKARIEEHNR 45
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 26/103 (25%)
Query: 147 TTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYEK-----------ASSKDKKCILY 195
T E +ER L+K+ + +HG++ V +A Y+K AS +K +L
Sbjct: 408 TDEELERTLDKIMILFRFIHGKD-------VFEAFYKKDLAKRLLVGKSASVDAEKSMLS 460
Query: 196 K------DAFHSLLEGEPDDMIIRVFADIISWLDDHSRSSTDS 232
K AF S LEG DM + DI+ H ++ +DS
Sbjct: 461 KLKHECGAAFTSKLEGMFKDM--ELSKDIMVHFKQHMQNQSDS 501
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 26/103 (25%)
Query: 147 TTEGIERRLEKVSLPLLILHGENDTVTDPSVSKALYEK-----------ASSKDKKCILY 195
T E +ER L+K+ + +HG++ V +A Y+K AS +K +L
Sbjct: 425 TDEELERTLDKIMILFRFIHGKD-------VFEAFYKKDLAKRLLVGKSASVDAEKSMLS 477
Query: 196 K------DAFHSLLEGEPDDMIIRVFADIISWLDDHSRSSTDS 232
K AF S LEG DM + DI+ H ++ +DS
Sbjct: 478 KLKHECGAAFTSKLEGMFKDM--ELSKDIMVHFKQHMQNQSDS 518
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 18 SFDRLVDDVIEHYSN----IKEYPEF-RTLPSFLFGQSLGGAVALKVHLKQPNAWSGAIL 72
S ++L D ++EHY + Y E+ R + L L G L + LKQP AW+ +
Sbjct: 61 SAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELC 120
Query: 73 VAPMCKI 79
C++
Sbjct: 121 RQVDCRL 127
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 151 IERRLEKVSLPLLILHGENDTVTDPSVSKALYEKASSKDKKCILYKDAFHSL 202
+ LEK ++P LI+HG++D S L +A + K L K H L
Sbjct: 213 FRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA-IPNSKVALIKGGPHGL 263
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Query: 10 AGLHGYIPSFDRLVDDVIEHYSNIKEYPEFRTLPSFLFGQSLGGAVALKVH 60
AG+ G +L+D V + K Y EF FG SLG + L+VH
Sbjct: 263 AGVTG------KLLDSVAREFIREKGYGEF-------FGHSLGHGIGLEVH 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,200,432
Number of Sequences: 62578
Number of extensions: 292265
Number of successful extensions: 794
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 25
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)