BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026830
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 273 bits (697), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 134/153 (87%), Positives = 147/153 (96%)
Query: 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 139
+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGNVVR+KLQGACGSCPSS MTMKMGIER
Sbjct: 2 VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIER 61
Query: 140 RLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVTIDEPIVKV 199
RLMEKIPEIVAVE++ DEETGLELNEENIEKVLEEIRPYL+G A GSL+LV I++PIVK+
Sbjct: 62 RLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKI 121
Query: 200 RITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 232
RITGPAAGVMTVRVAVTQKLREKIP+IAAVQL+
Sbjct: 122 RITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 154
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 48 CHSSCRLLLIRKRGAARR------NVIKAVATPDSAIELPLTAENIESVLDEIRPYLISD 101
C S + K G RR ++ A PD L L ENIE VL+EIRPYLI
Sbjct: 45 CGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGT 104
Query: 102 G-GNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVE 152
G++ L EI+ +V++++ G + VMT+++ + ++L EKIP I AV+
Sbjct: 105 ADGSLDLVEIEDPIVKIRITGPA----AGVMTVRVAVTQKLREKIPSIAAVQ 152
>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 91
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 139
LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIER
Sbjct: 3 LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 140 RLMEKIPEIVAVESVADEETGLE 162
RLMEKIP++ AVE V D+ETGLE
Sbjct: 63 RLMEKIPDVAAVEPVTDKETGLE 85
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 160 GLELNEENIEKVLEEIRPYLVGAAGGSLELVTIDEPIVKVRITGPA----AGVMTVRVAV 215
GL L N+E VL+++RPYL A GG + L I +V++++ G + ++T++ +
Sbjct: 2 GLPLTAGNVESVLDQVRPYLT-ADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGI 60
Query: 216 TQKLREKIPAIAAVQ 230
++L EKIP +AAV+
Sbjct: 61 ERRLMEKIPDVAAVE 75
>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 74
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 59/72 (81%)
Query: 161 LELNEENIEKVLEEIRPYLVGAAGGSLELVTIDEPIVKVRITGPAAGVMTVRVAVTQKLR 220
LELNEEN+EKVL EIRPYL G GG L+ + I PIVKVR+TGPAA V TVR+AV++KLR
Sbjct: 2 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLR 61
Query: 221 EKIPAIAAVQLL 232
EKIP+I VQLL
Sbjct: 62 EKIPSIQIVQLL 73
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 7/75 (9%)
Query: 80 LPLTAENIESVLDEIRPYLI-SDGGNVALHEIDGNVVRLKLQGACGSCPSSVM-TMKMGI 137
L L EN+E VL+EIRPYL + GG + I G +V+++L G P++V+ T+++ +
Sbjct: 2 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTG-----PAAVVRTVRIAV 56
Query: 138 ERRLMEKIPEIVAVE 152
++L EKIP I V+
Sbjct: 57 SKKLREKIPSIQIVQ 71
>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis
Protein Se0630. Northest Structural Genomics Consortium
Target Ser8
Length = 88
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 54/76 (71%)
Query: 79 ELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 138
E P + + V++ +RP+L+ DGG+ L +++ +V+L+L GACG+CPSS +T+K GIE
Sbjct: 4 ENPTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIE 63
Query: 139 RRLMEKIPEIVAVESV 154
R L E++P ++ VE V
Sbjct: 64 RALHEEVPGVIEVEQV 79
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 166 ENIEKVLEEIRPYLVGAAGGSLELVTIDEPIVKVRITGPA----AGVMTVRVAVTQKLRE 221
+ + +V+E +RP+L+ GG LV +++ IVK+++ G + +T++ + + L E
Sbjct: 10 DQVAEVIERLRPFLL-RDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE 68
Query: 222 KIPAIAAVQ 230
++P + V+
Sbjct: 69 EVPGVIEVE 77
>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of
Hirip5 Protein From Mouse Cdna
Length = 92
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 87 IESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKI 145
I+ +LD IRP + DGG+V + +VRLKLQG+C SCPSS++T+K GI+ L I
Sbjct: 18 IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYI 77
Query: 146 PEIVAVESVADEETG 160
PE+ VE V+ +G
Sbjct: 78 PEVEGVEQVSGPSSG 92
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 14 HQTLDSPSCSRPASKSTKSFFGERVSLTRWRNPVCHSSCRLLLIRKRGAARRNVIKAVAT 73
HQ LD P P S ++F G L R SC +I +G +V + + T
Sbjct: 107 HQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLT 166
Query: 74 PDSAIE 79
P +E
Sbjct: 167 PPDHLE 172
>pdb|2D13|A Chain A, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|B Chain B, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|C Chain C, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|D Chain D, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
Length = 227
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 148 IVAVESVADEETGL--ELNEENIE--KVLEEIRPYLVGAAGGSLELVTIDEPIVKVRI 201
VAV + E+ L ELN +N+E K L E + GG E +D P K +I
Sbjct: 144 FVAVSAYGLNESWLGRELNYKNLEELKKLSEKYGIHIAGEGGEFETFVLDMPFFKAKI 201
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 55 LLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNV 114
++I K GA R IK + A PLT E+I D +RP+ + L I N+
Sbjct: 77 IIITKGGADRNTSIKNIIEAIDAYR-PLTPEDIVVTHDSVRPF-------ITLRMIQDNI 128
Query: 115 VRLKLQGACGSCPSSVMTMKMGIERRLMEKIP 146
+ A + +V T+ + + IP
Sbjct: 129 QLAQNHDAVDTVVEAVDTIVESTNGQFITDIP 160
>pdb|1EX0|A Chain A, Human Factor Xiii, Mutant W279f Zymogen
pdb|1EX0|B Chain B, Human Factor Xiii, Mutant W279f Zymogen
Length = 731
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 189 LVTIDEPIVKVRITGPAAGVMTVRVAVTQKLREKI 223
++TI E I+KVR T MTV V T L+E +
Sbjct: 626 VLTIPEIIIKVRGTQVVGSDMTVTVQFTNPLKETL 660
>pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1EVU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 189 LVTIDEPIVKVRITGPAAGVMTVRVAVTQKLREKI 223
++TI E I+KVR T MTV V T L+E +
Sbjct: 626 VLTIPEIIIKVRGTQVVGSDMTVTVQFTNPLKETL 660
>pdb|1GGT|A Chain A, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1GGT|B Chain B, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1F13|B Chain B, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1GGU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1GGY|A Chain A, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1GGY|B Chain B, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1QRK|A Chain A, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1QRK|B Chain B, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1GGU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 27.3 bits (59), Expect = 7.6, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 189 LVTIDEPIVKVRITGPAAGVMTVRVAVTQKLREKI 223
++TI E I+KVR T MTV V T L+E +
Sbjct: 626 VLTIPEIIIKVRGTQVVGSDMTVTVEFTNPLKETL 660
>pdb|3M05|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Pepe_1480 From Pediococcus Pentosaceus Atcc 25745
pdb|3M05|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Pepe_1480 From Pediococcus Pentosaceus Atcc 25745
pdb|3M05|C Chain C, The Crystal Structure Of A Functionally Unknown Protein
Pepe_1480 From Pediococcus Pentosaceus Atcc 25745
Length = 114
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 101 DGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAV 151
D ++ ID NV KL G S T +GIE E++PE++ +
Sbjct: 17 DANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFXIGIEE---ERVPEVLEI 64
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 177 PYLVGAAGGSLELV----TIDEPIVKVRITGPAAGVMTVRVAVTQKLR 220
PY+ AG + +V T+ +PI V+I G A V+ V ++LR
Sbjct: 203 PYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKRLR 250
>pdb|4AAJ|A Chain A, Structure Of N-(5'-Phosphoribosyl)anthranilate Isomerase
From Pyrococcus Furiosus
Length = 228
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 163 LNEENIEKVLEEIRPYLVGAAGGSLELVTIDEP 195
LN EN+E+V++ ++PY V + G +E I +P
Sbjct: 182 LNAENVEEVIKVVKPYGVDVSSG-VEKYGIKDP 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,138,631
Number of Sequences: 62578
Number of extensions: 226807
Number of successful extensions: 1078
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 41
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)