Query 026830
Match_columns 232
No_of_seqs 241 out of 1851
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 23:15:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z51_A NIFU-like protein 2, ch 100.0 1.2E-50 4.2E-55 335.7 14.2 152 80-232 2-154 (154)
2 1xhj_A Nitrogen fixation prote 99.9 7.1E-26 2.4E-30 171.4 7.1 74 84-157 9-82 (88)
3 1th5_A NIFU1; iron-sulfur clus 99.9 5.5E-25 1.9E-29 161.6 5.1 71 161-232 2-73 (74)
4 1veh_A NIFU-like protein hirip 99.9 7.2E-25 2.4E-29 167.2 5.6 76 84-159 15-91 (92)
5 1xhj_A Nitrogen fixation prote 99.9 1.2E-23 4.3E-28 159.1 5.9 68 164-232 8-79 (88)
6 1th5_A NIFU1; iron-sulfur clus 99.9 8.6E-23 2.9E-27 149.9 4.9 70 81-154 3-73 (74)
7 1veh_A NIFU-like protein hirip 99.9 2E-22 6.8E-27 153.7 5.2 68 164-232 14-86 (92)
8 2z51_A NIFU-like protein 2, ch 99.8 7.2E-21 2.5E-25 157.3 9.8 85 65-153 68-153 (154)
9 2ltm_A NFU1 iron-sulfur cluste 98.3 4.1E-10 1.4E-14 87.7 0.0 54 8-62 38-100 (107)
10 2k1h_A Uncharacterized protein 98.7 9.2E-10 3.2E-14 83.9 -1.1 50 8-59 29-86 (94)
11 2ltl_A NIFU-like protein, mito 98.1 2.4E-09 8.1E-14 84.9 0.0 54 8-62 48-112 (119)
12 1pqx_A Conserved hypothetical 98.7 2E-09 6.7E-14 81.6 -0.7 48 8-57 29-84 (91)
13 3cq1_A Putative uncharacterize 97.3 0.0011 3.6E-08 50.2 8.6 66 164-231 7-79 (103)
14 3cq1_A Putative uncharacterize 97.3 0.00097 3.3E-08 50.4 7.7 70 82-153 6-79 (103)
15 1uwd_A Hypothetical protein TM 96.7 0.0039 1.3E-07 46.9 6.9 66 164-231 7-80 (103)
16 1uwd_A Hypothetical protein TM 96.5 0.008 2.7E-07 45.2 7.0 70 82-153 6-80 (103)
17 3lno_A Putative uncharacterize 96.3 0.011 3.7E-07 45.1 7.1 69 162-231 7-83 (108)
18 3lno_A Putative uncharacterize 95.7 0.02 6.9E-07 43.5 5.9 70 83-153 9-83 (108)
19 1xg8_A Hypothetical protein SA 79.9 2.1 7E-05 33.0 4.2 58 122-180 18-84 (111)
20 2ew9_A Copper-transporting ATP 68.8 5.6 0.00019 29.5 4.3 97 114-230 5-112 (149)
21 3ux2_A MIP18 family protein FA 62.7 3.8 0.00013 32.3 2.3 61 112-173 49-117 (130)
22 1xg8_A Hypothetical protein SA 53.8 11 0.00036 29.0 3.3 29 198-226 9-46 (111)
23 3fry_A Probable copper-exporti 46.0 25 0.00087 23.0 4.0 30 196-230 6-36 (73)
24 3prb_A FKBP-type peptidyl-prol 45.7 56 0.0019 27.7 7.0 68 81-154 150-217 (231)
25 3dxs_X Copper-transporting ATP 37.4 27 0.00093 22.5 3.0 30 197-230 4-34 (74)
26 3h1q_A Ethanolamine utilizatio 35.6 33 0.0011 28.3 3.9 104 102-221 148-252 (272)
27 4a4j_A Pacszia, cation-transpo 33.3 35 0.0012 21.6 3.1 31 196-230 3-34 (69)
28 3prb_A FKBP-type peptidyl-prol 28.4 1.2E+02 0.004 25.7 6.3 103 99-231 110-216 (231)
29 2zzt_A Putative uncharacterize 27.8 1.7E+02 0.0058 21.0 6.5 60 92-151 13-78 (107)
30 1yjr_A Copper-transporting ATP 24.4 93 0.0032 19.2 3.9 31 195-229 4-35 (75)
31 2npb_A Selenoprotein W; struct 24.1 95 0.0033 22.8 4.3 35 115-154 5-41 (96)
32 1sh8_A Hypothetical protein PA 23.6 1.1E+02 0.0039 22.8 4.9 41 80-122 3-43 (154)
33 2qn6_B Translation initiation 23.3 41 0.0014 24.7 2.1 25 84-108 67-91 (93)
34 1q8l_A Copper-transporting ATP 22.2 1.3E+02 0.0045 19.6 4.5 31 196-230 10-41 (84)
35 3zzp_A TS9, ribosomal protein 22.0 41 0.0014 23.7 1.8 23 81-103 55-77 (77)
36 3ux2_A MIP18 family protein FA 21.2 53 0.0018 25.7 2.4 37 194-230 49-88 (130)
37 3lo3_A Uncharacterized conserv 21.1 1.2E+02 0.004 21.7 4.2 27 83-109 15-41 (94)
No 1
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=100.00 E-value=1.2e-50 Score=335.74 Aligned_cols=152 Identities=88% Similarity=1.297 Sum_probs=147.8
Q ss_pred CCCcHHHHHHHHHHhcchhhhCCCcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeeccccccc
Q 026830 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET 159 (232)
Q Consensus 80 ~~l~~~~v~~~L~~IrP~L~~dGGdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~v~d~e~ 159 (232)
++++.++|+++|++|||+|++||||++|++|++++|+|||+|+|+|||+|.+||+++||++|++++|++..|+++.++++
T Consensus 2 ~~~~~e~v~~~L~~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e 81 (154)
T 2z51_A 2 VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEET 81 (154)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCC
T ss_pred CcchHHHHHHHHHHhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchh
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccchhhhhHHHHHhhcccccccc-CCCcEEEEEeeCCEEEEEEccCCCCchhHHHHHHHHHHhhCCCcceEEeC
Q 026830 160 GLELNEENIEKVLEEIRPYLVGA-AGGSLELVTIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 232 (232)
Q Consensus 160 g~e~~~~~i~~~L~~iRP~L~~~-dGGdielv~v~~gvv~Vrl~GaC~~c~Tl~~~Ie~~L~~~~P~i~~V~~~ 232 (232)
++++++++|+++|++|||||+ + ||||+||++|++++|+|||+|+|++|+|+|++||++||+++|+|++|+++
T Consensus 82 ~l~L~~~~v~~~L~~iRP~L~-~~dGGdvelv~v~~~~v~v~l~Gac~~~~Tlk~~Ie~~l~e~vP~i~~V~~~ 154 (154)
T 2z51_A 82 GLELNEENIEKVLEEIRPYLI-GTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 154 (154)
T ss_dssp SCCSSHHHHHHHHHHHGGGCC-GGGCCEEEEEEEETTEEEEEEESGGGGCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHhh-hcCCCCeEEEEEECCEEEEEEecCCcccHhHHHHHHHHHHHHCCCccEEEeC
Confidence 999999999999999999999 7 99999999999999999999999999999999999999999999999875
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.92 E-value=7.1e-26 Score=171.40 Aligned_cols=74 Identities=43% Similarity=0.920 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcchhhhCCCcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeeccccc
Q 026830 84 AENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 157 (232)
Q Consensus 84 ~~~v~~~L~~IrP~L~~dGGdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~v~d~ 157 (232)
.++|+++|++|||+|++||||++|++|++|+|+|||+|+|+|||+|.+||+++||++|++++|+++.|++++++
T Consensus 9 ~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~~ 82 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLE 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEECC
T ss_pred HHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988763
No 3
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.91 E-value=5.5e-25 Score=161.61 Aligned_cols=71 Identities=70% Similarity=1.049 Sum_probs=67.6
Q ss_pred cchhhhhHHHHHhhccccccccCC-CcEEEEEeeCCEEEEEEccCCCCchhHHHHHHHHHHhhCCCcceEEeC
Q 026830 161 LELNEENIEKVLEEIRPYLVGAAG-GSLELVTIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 232 (232)
Q Consensus 161 ~e~~~~~i~~~L~~iRP~L~~~dG-Gdielv~v~~gvv~Vrl~GaC~~c~Tl~~~Ie~~L~~~~P~i~~V~~~ 232 (232)
++++.++|+++|++|||||+ +|| ||+||++|++|+|+|||+|+|+||+|++++||++|++++|++++|+++
T Consensus 2 ~~~~~~~V~~~L~~iRP~L~-~dGGGdvelv~v~~g~V~v~l~GaC~gc~Tlk~gIe~~L~~~vpei~~V~~v 73 (74)
T 1th5_A 2 LELNEENVEKVLNEIRPYLA-GTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp CCCSHHHHHHHHTTTHHHHT-TTTCCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred hhHHHHHHHHHHHHHhHHHH-hcCCCcEEEEEEeCCEEEEEEecCCcchHHHHHHHHHHHHHHCCCCcEEEeC
Confidence 35678999999999999999 899 999999999999999999999999999999999999999999999875
No 4
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.90 E-value=7.2e-25 Score=167.16 Aligned_cols=76 Identities=45% Similarity=0.767 Sum_probs=72.4
Q ss_pred HHHHHHHHH-HhcchhhhCCCcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeeccccccc
Q 026830 84 AENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET 159 (232)
Q Consensus 84 ~~~v~~~L~-~IrP~L~~dGGdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~v~d~e~ 159 (232)
.++|+.+|+ +|||+|++||||++|++|++|+|+|||+|+|+|||+|.+||+++||++|++++|+++.|+++.+++.
T Consensus 15 ~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v~~~~~ 91 (92)
T 1veh_A 15 VAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSS 91 (92)
T ss_dssp HHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECSCSCC
T ss_pred HHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEcCCCCC
Confidence 689999999 5999999999999999999999999999999999999999999999999999999999999877654
No 5
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.88 E-value=1.2e-23 Score=159.07 Aligned_cols=68 Identities=26% Similarity=0.608 Sum_probs=64.6
Q ss_pred hhhhHHHHHhhccccccccCCCcEEEEEeeCCEEEEEEccCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 026830 164 NEENIEKVLEEIRPYLVGAAGGSLELVTIDEPIVKVRITGPAAGVM----TVRVAVTQKLREKIPAIAAVQLL 232 (232)
Q Consensus 164 ~~~~i~~~L~~iRP~L~~~dGGdielv~v~~gvv~Vrl~GaC~~c~----Tl~~~Ie~~L~~~~P~i~~V~~~ 232 (232)
..++|+++|++|||+|+ +||||+||++|++|+|+|||+|+|+||| ||+++||++|++++|+|+.|+.+
T Consensus 8 ~~~~I~~~L~~IRP~L~-~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 8 MFDQVAEVIERLRPFLL-RDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHH-HHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHHHHhcHHHH-hcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence 36789999999999999 9999999999999999999999999997 99999999999999999999864
No 6
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.86 E-value=8.6e-23 Score=149.90 Aligned_cols=70 Identities=39% Similarity=0.721 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHHhcchhhhCC-CcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeecc
Q 026830 81 PLTAENIESVLDEIRPYLISDG-GNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 154 (232)
Q Consensus 81 ~l~~~~v~~~L~~IrP~L~~dG-Gdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~v 154 (232)
+++.++|+++|++|||+|++|| ||++|++|++++|+|||+|+|+|| +||+++||++|++++|++..|+++
T Consensus 3 ~~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v 73 (74)
T 1th5_A 3 ELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp CCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred hHHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeC
Confidence 5679999999999999999999 999999999999999999999999 799999999999999999999865
No 7
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.86 E-value=2e-22 Score=153.65 Aligned_cols=68 Identities=22% Similarity=0.444 Sum_probs=64.3
Q ss_pred hhhhHHHHHh-hccccccccCCCcEEEEEeeCCEEEEEEccCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 026830 164 NEENIEKVLE-EIRPYLVGAAGGSLELVTIDEPIVKVRITGPAAGVM----TVRVAVTQKLREKIPAIAAVQLL 232 (232)
Q Consensus 164 ~~~~i~~~L~-~iRP~L~~~dGGdielv~v~~gvv~Vrl~GaC~~c~----Tl~~~Ie~~L~~~~P~i~~V~~~ 232 (232)
..++|+++|+ +|||+|+ +||||+||++|++|+|+|||+|+|+||| ||+++||++|++++|++++|+.+
T Consensus 14 ~~~~I~~~L~~~IRP~L~-~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v 86 (92)
T 1veh_A 14 VVAMIKELLDTRIRPTVQ-EDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 86 (92)
T ss_dssp HHHHHHHHHHHTTHHHHH-HHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred HHHHHHHHHHHHhhHHHH-hcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEc
Confidence 4678999998 6999999 9999999999999999999999999997 99999999999999999999875
No 8
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.84 E-value=7.2e-21 Score=157.32 Aligned_cols=85 Identities=40% Similarity=0.715 Sum_probs=75.8
Q ss_pred hhhhhhhcCCCcccCCCCcHHHHHHHHHHhcchhhh-CCCcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHh
Q 026830 65 RNVIKAVATPDSAIELPLTAENIESVLDEIRPYLIS-DGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLME 143 (232)
Q Consensus 65 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~IrP~L~~-dGGdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~ 143 (232)
|........++...+.+++.++|+++|++|||+|++ ||||+||++|++++|+|||+|+|++| +|++.+||++|++
T Consensus 68 pev~~V~~v~~~~e~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e 143 (154)
T 2z51_A 68 PEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLRE 143 (154)
T ss_dssp TTCCEEEECCSSCCSCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHH
T ss_pred CCceEEEEccCchhhhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCccc----HhHHHHHHHHHHH
Confidence 444444445666667899999999999999999997 99999999999999999999999998 8999999999999
Q ss_pred hCCcceEeec
Q 026830 144 KIPEIVAVES 153 (232)
Q Consensus 144 ~vpei~~V~~ 153 (232)
++|+++.|+.
T Consensus 144 ~vP~i~~V~~ 153 (154)
T 2z51_A 144 KIPSIAAVQL 153 (154)
T ss_dssp HCTTCCEEEE
T ss_pred HCCCccEEEe
Confidence 9999999975
No 9
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=98.32 E-value=4.1e-10 Score=87.72 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCCcCCCC--CCcceeeEecCe-eeec------cCCccccchHHHHHHhhhcc
Q 026830 8 PSYSRPHQTLDSPSCSRPA--SKSTKSFFGERV-SLTR------WRNPVCHSSCRLLLIRKRGA 62 (232)
Q Consensus 8 ~s~~~~~~a~~~pla~~lf--~~v~~~~~~~~~-t~t~------w~~~l~~~~~~~i~~~~~~~ 62 (232)
.+|.++++|..||||++|| +||+.|||++|| |||| |+. |++.|...||++++++
T Consensus 38 ~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~-ikp~V~~~I~~~~~sG 100 (107)
T 2ltm_A 38 MDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNL-LKPDIYATIMDFFASG 100 (107)
Confidence 6799999999999999999 999999999999 9999 998 9999999999997543
No 10
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=98.71 E-value=9.2e-10 Score=83.89 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCCCcCCCC--CCcceeeEecCe-eeec-----cCCccccchHHHHHHhh
Q 026830 8 PSYSRPHQTLDSPSCSRPA--SKSTKSFFGERV-SLTR-----WRNPVCHSSCRLLLIRK 59 (232)
Q Consensus 8 ~s~~~~~~a~~~pla~~lf--~~v~~~~~~~~~-t~t~-----w~~~l~~~~~~~i~~~~ 59 (232)
.+|.+.+ |..||||++|| +||+.|||++|| |||| |+. |++.+...|++.+
T Consensus 29 ~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~-ikp~I~~~I~~~~ 86 (94)
T 2k1h_A 29 TTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNE-LLPQIENTFAKSN 86 (94)
T ss_dssp CEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHH-HHHHHHHHHHHHC
T ss_pred eecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHH-HHHHHHHHHHHHH
Confidence 5689988 99999999999 999999999999 9999 998 9999999999874
No 11
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.4e-09 Score=84.85 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=49.6
Q ss_pred CCCCCCCCCC--CCCCcCCCC---CCcceeeEecCe-eeec-----cCCccccchHHHHHHhhhcc
Q 026830 8 PSYSRPHQTL--DSPSCSRPA---SKSTKSFFGERV-SLTR-----WRNPVCHSSCRLLLIRKRGA 62 (232)
Q Consensus 8 ~s~~~~~~a~--~~pla~~lf---~~v~~~~~~~~~-t~t~-----w~~~l~~~~~~~i~~~~~~~ 62 (232)
.+|.++++|. .||||++|| +||+.|||++|| |||| |+. |++.|...|+++++++
T Consensus 48 ~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~~~dW~~-ikp~I~~~I~e~~~sg 112 (119)
T 2ltl_A 48 IVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNS-IKPEIIDLLTKQLAYG 112 (119)
Confidence 5699999988 899999999 899999999999 9999 998 9999999999997543
No 12
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=98.66 E-value=2e-09 Score=81.62 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCCCcCCCC--CCcceeeEecCe-eeec-----cCCccccchHHHHHH
Q 026830 8 PSYSRPHQTLDSPSCSRPA--SKSTKSFFGERV-SLTR-----WRNPVCHSSCRLLLI 57 (232)
Q Consensus 8 ~s~~~~~~a~~~pla~~lf--~~v~~~~~~~~~-t~t~-----w~~~l~~~~~~~i~~ 57 (232)
.+|.+.+ |..||||.+|| +||+.|||++|| |||| |+. |++.+...|+.
T Consensus 29 ~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~-ikp~V~~~I~~ 84 (91)
T 1pqx_A 29 DTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWET-VLPKVEAVFEL 84 (91)
T ss_dssp EEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTT-THHHHHHHTCS
T ss_pred eEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHH-HHHHHHHHHHH
Confidence 5788988 99999999999 999999999999 9999 998 99999988874
No 13
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.33 E-value=0.0011 Score=50.19 Aligned_cols=66 Identities=26% Similarity=0.332 Sum_probs=56.9
Q ss_pred hhhhHHHHHhh-ccccccccCC---CcEEEEEeeCCEEEEEEccCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 026830 164 NEENIEKVLEE-IRPYLVGAAG---GSLELVTIDEPIVKVRITGPAAGVM---TVRVAVTQKLREKIPAIAAVQL 231 (232)
Q Consensus 164 ~~~~i~~~L~~-iRP~L~~~dG---Gdielv~v~~gvv~Vrl~GaC~~c~---Tl~~~Ie~~L~~~~P~i~~V~~ 231 (232)
++++|.++|.. +.|.+. .+- |-+.=+.++++.|+|.|+-.+.+|| +++..|+++|+ .+|.+..|++
T Consensus 7 ~~~~V~~aL~~V~DPel~-~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~V~V 79 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELG-LDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEV 79 (103)
T ss_dssp HHHHHHHHHTTCBCTTTC-SBTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCCC-cCchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCceeEEE
Confidence 46788899986 789987 676 7888889999999999999999998 89999999997 6899988764
No 14
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.26 E-value=0.00097 Score=50.38 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred CcHHHHHHHHHH-hcchhhhCC---CcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeec
Q 026830 82 LTAENIESVLDE-IRPYLISDG---GNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (232)
Q Consensus 82 l~~~~v~~~L~~-IrP~L~~dG---Gdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~ 153 (232)
.+.++|.++|.. +.|.+..+- |-|.=+.++++.|+|.|...+.+||. ...++..|+.+|+ .+|++..|..
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~-~l~gv~~V~V 79 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPL-HDSLGEAVRQALS-RLPGVEEVEV 79 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCS-SCHHHHHHHHHHH-TSTTCCEEEE
T ss_pred hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcH-HHHHHHHHHHHHH-hCCCceeEEE
Confidence 347889999986 789998777 88888899989999999999999998 6788899999997 4788877653
No 15
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.75 E-value=0.0039 Score=46.94 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=53.4
Q ss_pred hhhhHHHHHhhcc-ccccccCC---CcEEEEEeeC-CEEEEEEccCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 026830 164 NEENIEKVLEEIR-PYLVGAAG---GSLELVTIDE-PIVKVRITGPAAGVM---TVRVAVTQKLREKIPAIAAVQL 231 (232)
Q Consensus 164 ~~~~i~~~L~~iR-P~L~~~dG---Gdielv~v~~-gvv~Vrl~GaC~~c~---Tl~~~Ie~~L~~~~P~i~~V~~ 231 (232)
++++|.++|..+. |.+. .+- |-+.=+.+++ |.|+|.|+-...+|+ .++..|+++|+ .+|++..|.+
T Consensus 7 ~~~~V~~aL~~V~DPel~-~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~v~V 80 (103)
T 1uwd_A 7 TKEDVLNALKNVIDFELG-LDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV 80 (103)
T ss_dssp CHHHHHHHHTTCBCTTTS-SBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred hHHHHHHHHcCCCCCCCC-cChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcceEEE
Confidence 4678889998755 8886 565 6666678875 899999999999997 88899999996 6899988764
No 16
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.46 E-value=0.008 Score=45.19 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHHh-cchhhhCC---CcEEEEEEeC-cEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeec
Q 026830 82 LTAENIESVLDEI-RPYLISDG---GNVALHEIDG-NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (232)
Q Consensus 82 l~~~~v~~~L~~I-rP~L~~dG---Gdvelv~i~~-~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~ 153 (232)
++.++|.++|..| -|.+..+- |-|.=+.+++ |.|+|.+.-.+.+||. ...++..|+.+|++ +|++..|..
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~gv~~v~V 80 (103)
T 1uwd_A 6 VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIKK-IEGVNNVEV 80 (103)
T ss_dssp CCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHHT-SSSCCEEEE
T ss_pred chHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CCCcceEEE
Confidence 4578999999875 48887665 6677778885 8999999999999996 68888999999974 788877653
No 17
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=96.34 E-value=0.011 Score=45.06 Aligned_cols=69 Identities=25% Similarity=0.286 Sum_probs=55.6
Q ss_pred chhhhhHHHHHhh-ccccccccC---CCcEEEEEeeC-CEEEEEEccCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 026830 162 ELNEENIEKVLEE-IRPYLVGAA---GGSLELVTIDE-PIVKVRITGPAAGVM---TVRVAVTQKLREKIPAIAAVQL 231 (232)
Q Consensus 162 e~~~~~i~~~L~~-iRP~L~~~d---GGdielv~v~~-gvv~Vrl~GaC~~c~---Tl~~~Ie~~L~~~~P~i~~V~~ 231 (232)
+.++++|.++|.. .-|.+. .+ -|-+.=+.+++ |.|+|.|+-...+|| .++..|+++|+..+|++.+|.+
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~-~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELG-VDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTT-EEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hhhHHHHHHHHcCCCCCCCC-CCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 3456778888875 578775 44 47777788875 999999999999997 8889999999778999988764
No 18
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=95.66 E-value=0.02 Score=43.51 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=56.3
Q ss_pred cHHHHHHHHHH-hcchhhhC---CCcEEEEEEeC-cEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeec
Q 026830 83 TAENIESVLDE-IRPYLISD---GGNVALHEIDG-NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (232)
Q Consensus 83 ~~~~v~~~L~~-IrP~L~~d---GGdvelv~i~~-~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~ 153 (232)
+.++|.++|.. +-|.+..+ -|-|.=+.+++ |.|+|.|.-...+||.. ..++..|+.+|+..+|++..|..
T Consensus 9 ~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 9 FENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCCCCceEEE
Confidence 46788888875 57777533 47788888885 89999999999999975 68889999999667999887753
No 19
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=79.87 E-value=2.1 Score=32.96 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=35.3
Q ss_pred cCCCC---CCchHhHHHHHHHHHHhhCCcc-eEeecccccccccch---hhhhHHHHHh--hcccccc
Q 026830 122 ACGSC---PSSVMTMKMGIERRLMEKIPEI-VAVESVADEETGLEL---NEENIEKVLE--EIRPYLV 180 (232)
Q Consensus 122 aC~gC---p~s~~Tlk~~Ie~~L~~~vpei-~~V~~v~d~e~g~e~---~~~~i~~~L~--~iRP~L~ 180 (232)
-|.+| |+|-.|. ++++.+|+.++|+. -.+.=++.+.....+ ..+=++++++ ..=|.+-
T Consensus 18 iCASCVnaPSSkeTy-EWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~ 84 (111)
T 1xg8_A 18 ICASCVNAPTSKDIY-DWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLIT 84 (111)
T ss_dssp CCGGGSSSCCHHHHH-HHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEE
T ss_pred cchhccCCCCchhHH-HHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEE
Confidence 36666 8888887 89999999999973 344333332222221 2344667775 3667765
No 20
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=68.79 E-value=5.6 Score=29.47 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=49.3
Q ss_pred EEEEEEcc-cCCCCCCchHhHHHHHHHHHHhhCCcceEeecccc--ccc----ccchhhhhHHHHHhhccccccccCCCc
Q 026830 114 VVRLKLQG-ACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVAD--EET----GLELNEENIEKVLEEIRPYLVGAAGGS 186 (232)
Q Consensus 114 ~v~Vrl~G-aC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~v~d--~e~----g~e~~~~~i~~~L~~iRP~L~~~dGGd 186 (232)
.+.+++.| .|.+|. ..|+..|.. +|.+..+..... ... ......+.+.+.++..- =.
T Consensus 5 ~~~~~v~gm~C~~C~-------~~ie~~l~~-~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G--------~~ 68 (149)
T 2ew9_A 5 KCFLQIKGMTCASCV-------SNIERNLQK-EAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLG--------FE 68 (149)
T ss_dssp EEEEEEECCCSSSHH-------HHHHHHHHT-TSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHT--------CE
T ss_pred EEEEEECCeecHHHH-------HHHHHHHhc-CCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCC--------Cc
Confidence 34566766 677773 347787776 777665542211 110 01122334555554321 11
Q ss_pred EEEEEe---eCCEEEEEEcc-CCCCchhHHHHHHHHHHhhCCCcceEE
Q 026830 187 LELVTI---DEPIVKVRITG-PAAGVMTVRVAVTQKLREKIPAIAAVQ 230 (232)
Q Consensus 187 ielv~v---~~gvv~Vrl~G-aC~~c~Tl~~~Ie~~L~~~~P~i~~V~ 230 (232)
..++.- ..+.+.+++.| .|++|. ..|++.|. ++|.+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~v~gm~C~~C~---~~ie~~l~-~~~gv~~~~ 112 (149)
T 2ew9_A 69 AAVMEDYAGSDGNIELTITGMTCASCV---HNIESKLT-RTNGITYAS 112 (149)
T ss_dssp EEECSCSCCSSSEEEEEEESCCSHHHH---HHHHHHHH-HSSSCCEEE
T ss_pred eEeecccccccceeEEEEEeccCHHHH---HHHHHHHh-cCCCeEEEE
Confidence 111110 12567778876 477775 34677765 567776654
No 21
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=62.75 E-value=3.8 Score=32.35 Aligned_cols=61 Identities=15% Similarity=0.314 Sum_probs=40.2
Q ss_pred CcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeec-ccc--cccccchh-----hhhHHHHHh
Q 026830 112 GNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES-VAD--EETGLELN-----EENIEKVLE 173 (232)
Q Consensus 112 ~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~-v~d--~e~g~e~~-----~~~i~~~L~ 173 (232)
++.|.|.|+..=.+||++. .+...|+.+|.+.+|...+|.. ++. |....+.| .|++..+||
T Consensus 49 ~~~V~V~~TPT~p~Cp~a~-~I~l~Ir~kL~~~lp~~~kV~v~I~pgtH~~e~~vnKQl~DKERvaAAlE 117 (130)
T 3ux2_A 49 EYLVIIRFTPTVPHCSLAT-LIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAME 117 (130)
T ss_dssp EEEEEECCCCCCCSSCHHH-HHHHHHHHHHHHHCSSCCCCCCCCCCC------CHHHHHHCHHHHHHHHH
T ss_pred CCeEEEEEEeCCCCCCchH-HHHHHHHHHHHHhCCCceEEEEEECCCCCcCHHHHHHhhhhHHHHHHHhc
Confidence 4679999999999999884 4557999999998988665542 222 33222222 356666665
No 22
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=53.84 E-value=11 Score=29.02 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=20.9
Q ss_pred EEEEccC---CCCc---hhHH---HHHHHHHHhhCCCc
Q 026830 198 KVRITGP---AAGV---MTVR---VAVTQKLREKIPAI 226 (232)
Q Consensus 198 ~Vrl~Ga---C~~c---~Tl~---~~Ie~~L~~~~P~i 226 (232)
.|-.=|| |++| ||-| .+++.+|++++|+.
T Consensus 9 ~i~VYGAe~iCASCVnaPSSkeTyEWLqAal~RKyp~~ 46 (111)
T 1xg8_A 9 AVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNI 46 (111)
T ss_dssp EEEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTS
T ss_pred EEEEEcccccchhccCCCCchhHHHHHHHHHhCcCCCC
Confidence 3334455 8898 3333 89999999999974
No 23
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=45.99 E-value=25 Score=22.96 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=21.4
Q ss_pred EEEEEEcc-CCCCchhHHHHHHHHHHhhCCCcceEE
Q 026830 196 IVKVRITG-PAAGVMTVRVAVTQKLREKIPAIAAVQ 230 (232)
Q Consensus 196 vv~Vrl~G-aC~~c~Tl~~~Ie~~L~~~~P~i~~V~ 230 (232)
...+++.| .|.+|. ..|++.|++ |.+..+.
T Consensus 6 ~~~~~v~gm~C~~C~---~~ie~~l~~--~gv~~~~ 36 (73)
T 3fry_A 6 KIVLELSGLSCHHCV---ARVKKALEE--AGAKVEK 36 (73)
T ss_dssp EEEEEEESSBCGGGH---HHHHHHHHH--TTCEEEE
T ss_pred EEEEEECCCCCHHHH---HHHHHHhcc--CCcEEEE
Confidence 35667777 599887 347888886 8887664
No 24
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=45.68 E-value=56 Score=27.74 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHhcchhhhCCCcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeecc
Q 026830 81 PLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 154 (232)
Q Consensus 81 ~l~~~~v~~~L~~IrP~L~~dGGdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~v 154 (232)
+-+.++|..++...-|.+ + ++ -+.+++++++|.+...+.. ...|...|..|.+.|.++++++..|.-+
T Consensus 150 eat~eei~~~~~~~~~~~--~--~~-~~~~~~~~~~i~~p~~~~~-~~~~~~~k~~~~~~i~~~~~~~~~v~~~ 217 (231)
T 3prb_A 150 DDKKNIVKEIVKMYVPRL--S--DV-KVTIRNGTVKIELPEFAPF-IPNIQTAKMAIANEILKRLEDAEKVSFV 217 (231)
T ss_dssp CSHHHHHHHHHHHHCTTC--C--CC-EEEEETTEEEEECCTTGGG-STTHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCHHHHHHHHHHhcCCc--c--ce-EEEEeCCeEEEEcCHHHhh-hhHHHHHHHHHHHHHHHhccccceEEEE
Confidence 344688888887544433 2 22 3677889999999887654 4789999999999999999988887543
No 25
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=37.40 E-value=27 Score=22.55 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=19.8
Q ss_pred EEEEEcc-CCCCchhHHHHHHHHHHhhCCCcceEE
Q 026830 197 VKVRITG-PAAGVMTVRVAVTQKLREKIPAIAAVQ 230 (232)
Q Consensus 197 v~Vrl~G-aC~~c~Tl~~~Ie~~L~~~~P~i~~V~ 230 (232)
+.+++.| .|++|. ..|++.|+ ++|.+..+.
T Consensus 4 ~~~~v~gm~C~~C~---~~ie~~l~-~~~gv~~~~ 34 (74)
T 3dxs_X 4 IQVGVTGMTCAACS---NSVEAALM-NVNGVFKAS 34 (74)
T ss_dssp EEEEEECCCSHHHH---HHHHHHHH-TSTTEEEEE
T ss_pred EEEEECCcCCHHHH---HHHHHHHh-cCCCEEEEE
Confidence 4567777 688886 33666665 677776654
No 26
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=35.56 E-value=33 Score=28.30 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCCcceEeec-ccccccccchhhhhHHHHHhhcccccc
Q 026830 102 GGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES-VADEETGLELNEENIEKVLEEIRPYLV 180 (232)
Q Consensus 102 GGdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpei~~V~~-v~d~e~g~e~~~~~i~~~L~~iRP~L~ 180 (232)
||+.++.-+++|.+. ...+|+.+...+...+...|.-...+...+.. ....+...+.....++++++.++-.|+
T Consensus 148 ggst~~~~~~~g~~~-----~~~~~~~Gg~~~~~~l~~~l~~~~~~ae~~k~~~~~~~~~~~~~~~~~~~i~~~i~~~l~ 222 (272)
T 3h1q_A 148 GGTTGIAVIEKGKIT-----ATFDEPTGGTHLSLVLAGSYKIPFEEAETIKKDFSRHREIMRVVRPVIEKMALIVKEVIK 222 (272)
T ss_dssp SSCEEEEEEETTEEE-----EECCBSCCHHHHHHHHHHHHTCCHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEEECCEEE-----EEecCCCcHHHHHHHHHHHhCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554432 24677888887777776666411100100000 000111112223345555666666676
Q ss_pred ccCCCcEEEEEeeCCEEEEEEccCCCCchhHHHHHHHHHHh
Q 026830 181 GAAGGSLELVTIDEPIVKVRITGPAAGVMTVRVAVTQKLRE 221 (232)
Q Consensus 181 ~~dGGdielv~v~~gvv~Vrl~GaC~~c~Tl~~~Ie~~L~~ 221 (232)
..+ + ++ .|-|+|..+..|.+...+++.|..
T Consensus 223 -~~~-~-----~~----~ivL~GG~a~~~~l~~~l~~~l~~ 252 (272)
T 3h1q_A 223 -NYD-Q-----TL----PVYVVGGTAYLTGFSEEFSRFLGK 252 (272)
T ss_dssp -TSC-S-----SC----CEEEESGGGGSTTHHHHHHHHHSS
T ss_pred -hcC-C-----CC----EEEEECCccchhhHHHHHHHHhCC
Confidence 332 1 11 566889888888888888888743
No 27
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=33.35 E-value=35 Score=21.55 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEEcc-CCCCchhHHHHHHHHHHhhCCCcceEE
Q 026830 196 IVKVRITG-PAAGVMTVRVAVTQKLREKIPAIAAVQ 230 (232)
Q Consensus 196 vv~Vrl~G-aC~~c~Tl~~~Ie~~L~~~~P~i~~V~ 230 (232)
.+.+++.| .|.+|. ..|++.|+ ++|.+..+.
T Consensus 3 ~~~~~v~gm~C~~C~---~~i~~~l~-~~~gv~~~~ 34 (69)
T 4a4j_A 3 TINLQLEGMDCTSCA---SSIERAIA-KVPGVQSCQ 34 (69)
T ss_dssp EEEEEEESCCSHHHH---HHHHHHHH-TSTTEEEEE
T ss_pred EEEEEECCeecHHHH---HHHHHHHh-cCCCeEEEE
Confidence 45677777 588776 33566665 567776654
No 28
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=28.40 E-value=1.2e+02 Score=25.69 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=66.2
Q ss_pred hhCCCcEEEEEEeCcEEEEEEcccCCCCCCchHhHHHHHHHHHHhhCC-cceEeecccccccccchhhhhHHHHHhhccc
Q 026830 99 ISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIP-EIVAVESVADEETGLELNEENIEKVLEEIRP 177 (232)
Q Consensus 99 ~~dGGdvelv~i~~~~v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vp-ei~~V~~v~d~e~g~e~~~~~i~~~L~~iRP 177 (232)
+.+|....+++++++.|+|-+.- |.+..||. |. +|.+|. +-++++++.+++..-|
T Consensus 110 ~~~~~~g~V~~v~~~~V~vD~NH-----PLAGk~L~----------F~vev~~v~---------eat~eei~~~~~~~~~ 165 (231)
T 3prb_A 110 TIDGIPGKIVSINSGRVLVDFNH-----ELAGKEVK----------YRIKIEEVV---------DDKKNIVKEIVKMYVP 165 (231)
T ss_dssp EETTEEEEEEEEETTEEEEECSC-----TTTTCCEE----------EEEEEEEEC---------CSHHHHHHHHHHHHCT
T ss_pred EecCCCEEEEEEcCCEEEEeCCC-----ccCCCEEE----------EEEEEEEEe---------cCCHHHHHHHHHHhcC
Confidence 34455667888888998887742 45555542 10 233333 2235567776664333
Q ss_pred cccccCCCcEEEEEeeCCEEEEEEccCCCCc---hhHHHHHHHHHHhhCCCcceEEe
Q 026830 178 YLVGAAGGSLELVTIDEPIVKVRITGPAAGV---MTVRVAVTQKLREKIPAIAAVQL 231 (232)
Q Consensus 178 ~L~~~dGGdielv~v~~gvv~Vrl~GaC~~c---~Tl~~~Ie~~L~~~~P~i~~V~~ 231 (232)
.+. ++ -+.+++++++|.+.-.+..- +..|..|.+.|.++++++++|+.
T Consensus 166 ~~~-----~~-~~~~~~~~~~i~~p~~~~~~~~~~~~k~~~~~~i~~~~~~~~~v~~ 216 (231)
T 3prb_A 166 RLS-----DV-KVTIRNGTVKIELPEFAPFIPNIQTAKMAIANEILKRLEDAEKVSF 216 (231)
T ss_dssp TCC-----CC-EEEEETTEEEEECCTTGGGSTTHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred Ccc-----ce-EEEEeCCeEEEEcCHHHhhhhHHHHHHHHHHHHHHHhccccceEEE
Confidence 221 12 36778999999987665433 36778999999999999999875
No 29
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=27.83 E-value=1.7e+02 Score=21.05 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=31.5
Q ss_pred HHhcchhhhCCCcEEEEEEe----CcEEEEEEcccCCC-CC-CchHhHHHHHHHHHHhhCCcceEe
Q 026830 92 DEIRPYLISDGGNVALHEID----GNVVRLKLQGACGS-CP-SSVMTMKMGIERRLMEKIPEIVAV 151 (232)
Q Consensus 92 ~~IrP~L~~dGGdvelv~i~----~~~v~Vrl~GaC~g-Cp-~s~~Tlk~~Ie~~L~~~vpei~~V 151 (232)
++|+-.+.+..|-..+.++. ++.+++-+.=...+ -+ ...-.+...|+..|++.+|.+..|
T Consensus 13 ~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~v 78 (107)
T 2zzt_A 13 DDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDV 78 (107)
T ss_dssp HHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 34444455566766666663 33222222211111 11 112357789999999999976544
No 30
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=24.37 E-value=93 Score=19.25 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=17.3
Q ss_pred CEEEEEEcc-CCCCchhHHHHHHHHHHhhCCCcceE
Q 026830 195 PIVKVRITG-PAAGVMTVRVAVTQKLREKIPAIAAV 229 (232)
Q Consensus 195 gvv~Vrl~G-aC~~c~Tl~~~Ie~~L~~~~P~i~~V 229 (232)
+.+.+++.| .|.+|... |++.|. ++|.+..+
T Consensus 4 ~~~~~~v~gm~C~~c~~~---i~~~l~-~~~gv~~~ 35 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHK---IESSLT-KHRGILYC 35 (75)
T ss_dssp CCEEEEEETCCTTTHHHH---HHHHHT-TSTTEEEE
T ss_pred eEEEEEECCcccHHHHHH---HHHHHH-cCCCEEEE
Confidence 445566666 47777532 555554 45665544
No 31
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=24.13 E-value=95 Score=22.78 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=24.3
Q ss_pred EEEEEcccCCCCCCchHhHHHHHHHHHHhhCCc-ce-Eeecc
Q 026830 115 VRLKLQGACGSCPSSVMTMKMGIERRLMEKIPE-IV-AVESV 154 (232)
Q Consensus 115 v~Vrl~GaC~gCp~s~~Tlk~~Ie~~L~~~vpe-i~-~V~~v 154 (232)
|.|.| |.+|. |..--....+.|...||+ +. .+...
T Consensus 5 V~I~Y---C~~C~--y~~ra~~laqeLl~~Fp~~l~V~~~l~ 41 (96)
T 2npb_A 5 VRVVY---SGACG--YKPKYLQLKEKLEHEFPGCLDICGEGT 41 (96)
T ss_dssp EEEEC---CCCSC--HHHHHHHHHHHHHHHSBTTEEEEECCC
T ss_pred EEEEE---cCCCC--CHHHHHHHHHHHHHhCCcceEEEEEEc
Confidence 45555 77774 666667899999999998 54 44433
No 32
>1sh8_A Hypothetical protein PA5026; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Pseudomonas aeruginosa} SCOP: d.38.1.5
Probab=23.55 E-value=1.1e+02 Score=22.78 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHHHhcchhhhCCCcEEEEEEeCcEEEEEEccc
Q 026830 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGA 122 (232)
Q Consensus 80 ~~l~~~~v~~~L~~IrP~L~~dGGdvelv~i~~~~v~Vrl~Ga 122 (232)
++++.+.++..+..--|+.+..| +++..++++.+.+++.-.
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~lg--~~~~~~~~~~~~~~~~~~ 43 (154)
T 1sh8_A 3 MPLPTELARHLTEEKIAFVQRSG--LRAEVLEPGYVRLRMPGA 43 (154)
T ss_dssp CSSCHHHHHHHHHHSSHHHHHHT--CEEEEEETTEEEEEECST
T ss_pred CCcCHHHHHHHhhccCCchhhcc--eEEEEEeCCeEEEEccCC
Confidence 47888999999987779988875 567788888888888643
No 33
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=23.31 E-value=41 Score=24.68 Aligned_cols=25 Identities=4% Similarity=0.194 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcchhhhCCCcEEEE
Q 026830 84 AENIESVLDEIRPYLISDGGNVALH 108 (232)
Q Consensus 84 ~~~v~~~L~~IrP~L~~dGGdvelv 108 (232)
++.++++++.+.-.+..+||..+++
T Consensus 67 e~~L~~ai~~i~~~i~~~gG~~~v~ 91 (93)
T 2qn6_B 67 SEALNQIISNLIKIGKEENVDISVV 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4577778888999999999999875
No 34
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=22.21 E-value=1.3e+02 Score=19.61 Aligned_cols=31 Identities=13% Similarity=0.467 Sum_probs=19.9
Q ss_pred EEEEEEcc-CCCCchhHHHHHHHHHHhhCCCcceEE
Q 026830 196 IVKVRITG-PAAGVMTVRVAVTQKLREKIPAIAAVQ 230 (232)
Q Consensus 196 vv~Vrl~G-aC~~c~Tl~~~Ie~~L~~~~P~i~~V~ 230 (232)
.+.+++.| .|.+|... |++.|. ++|.+..+.
T Consensus 10 ~~~~~v~gm~C~~C~~~---ie~~l~-~~~GV~~~~ 41 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTST---IEGKIG-KLQGVQRIK 41 (84)
T ss_dssp EEEEEECCTTTCSSCHH---HHHHHH-TCTTEEEEE
T ss_pred EEEEEECCcccHHHHHH---HHHHHH-cCCCeEEEE
Confidence 45677777 59999633 566665 567766554
No 35
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=22.04 E-value=41 Score=23.75 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHhcchhhhCCC
Q 026830 81 PLTAENIESVLDEIRPYLISDGG 103 (232)
Q Consensus 81 ~l~~~~v~~~L~~IrP~L~~dGG 103 (232)
.+++++++.+++++.-.|..+||
T Consensus 55 ~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 55 NLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC
Confidence 57789999999999999999987
No 36
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=21.22 E-value=53 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCEEEEEEccCCCCch---hHHHHHHHHHHhhCCCcceEE
Q 026830 194 EPIVKVRITGPAAGVM---TVRVAVTQKLREKIPAIAAVQ 230 (232)
Q Consensus 194 ~gvv~Vrl~GaC~~c~---Tl~~~Ie~~L~~~~P~i~~V~ 230 (232)
++.|.|.|+=.=.+|| .+...|+.+|.+.+|...+|.
T Consensus 49 ~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 49 EYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp EEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred CCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence 3578999999999997 666799999998888765554
No 37
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.05 E-value=1.2e+02 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHhcchhhhCCCcEEEEE
Q 026830 83 TAENIESVLDEIRPYLISDGGNVALHE 109 (232)
Q Consensus 83 ~~~~v~~~L~~IrP~L~~dGGdvelv~ 109 (232)
+.+..+++.+.+.|.++.+||.+-..+
T Consensus 15 d~e~y~~Y~~~~~~~l~~~GG~~l~rg 41 (94)
T 3lo3_A 15 DAEKLQQYGARVASTLAKYSGEVLVKG 41 (94)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 377899999999999999999988877
Done!