BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026831
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 3/115 (2%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GGLGG+ A +S + ++L+ Q+ AICA+P VL HG+ GK T++P+M +
Sbjct: 75 GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 133
Query: 178 L-SDQSEIENRVVV-DGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
L ++ S ++++ VV DGNLITSRGPGT+ EFAL I E+ G+ K E+AK LL++
Sbjct: 134 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVA 188
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG+ GA+ F S LV +K+ S R AICA+PA VL PH + T FP + +K
Sbjct: 74 GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 133
Query: 178 LSDQSEIENRVVVDG--NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
+ + ++ RVV D L+TS+GPGT+++F L I++ GR KA E+A L+++
Sbjct: 134 IPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMA 188
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGCGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 73 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 131
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLARDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3B38|A Chain A, Structure Of A104v Dj-1
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ ICA P +L H + G K T P +K
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|2RK3|A Chain A, Structure Of A104t Dj-1
Length = 197
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ ICA P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106
Length = 196
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106
Length = 196
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|B Chain B, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 73 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGSKVTTHPLAKDK 131
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186
>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|A Chain A, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 73 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGSKVTTHPLAKDK 131
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AICA P +L H + G K T P +K
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + EN V DG ++TSRGPGTS +FALAIVE G+ A ++ L+L
Sbjct: 136 MMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid
Length = 189
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS EFALAIVE G+ A ++ L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|2RK6|A Chain A, Structure Of E163k Dj-1
Length = 192
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG GAQ ++S + +LK+Q+ AI A P +L H + G K T P +K
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
+ + ENRV DG ++TSRGPGTS +FALAIVE G+ A ++ L+L
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG+GGAQAFA S L+ ++ + + AICA+PALV G + T P +
Sbjct: 79 GGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 178 LSDQSEIENRVV--VDGNLITSRGPGTSMEF 206
+ + RV +L+TS+GPGT++EF
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEF 169
>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG+GGAQAFA S L+ ++ + + AI A+PALV G + T P +
Sbjct: 79 GGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 178 LSDQSEIENRVV--VDGNLITSRGPGTSMEF 206
+ + RV +L+TS+GPGT++EF
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEF 169
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL 178
G G + + +N + + ++ ++C AL L G+L GK+AT +
Sbjct: 73 GGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSAL-LSKAGILNGKRATTNKRSFKWV 131
Query: 179 SDQSEI-----ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAK 225
++Q+E E R V DGN+ TS G ++ L +E G+ KALE+++
Sbjct: 132 TEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISR 183
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS--EIEN 186
+EK V++ +K +P +IC P +++ G+L+G+K T++P + + + ++
Sbjct: 79 NEKAVSIARKXFSEGKPVASICHGPQILISA-GVLRGRKGTSYPGIKDDXINAGVEWVDA 137
Query: 187 RVVVDGNLITSRGP 200
VVVDGN ++SR P
Sbjct: 138 EVVVDGNWVSSRVP 151
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 133 VNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVV 190
V +++ E + A+ P +++E LL+GK+AT F A+ + ++ +VV
Sbjct: 95 VRFVQEAXEQGKLVAAVXHGPQVLIEGD-LLRGKQATGFIAISKDXXNAGADYLDEALVV 153
Query: 191 DGNLITSRGPGTSMEFALAIVEK--FFGRNKAL 221
DGNLITSR PG F AI+ + + G++ AL
Sbjct: 154 DGNLITSREPGDLAIFTTAILSRLGYGGKDAAL 186
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
G A + + + +++Q R ++C S +LVL GLL+GK+AT A L+
Sbjct: 76 GVGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
I RVV DGNL+T G ++FAL + + F A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
G A + + + +++Q R ++C +LVL GLL+GK+AT A L+
Sbjct: 76 GVGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
I RVV DGNL+T G ++FAL + + F A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175
>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|B Chain B, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|C Chain C, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|D Chain D, Schizosaccharomyces Pombe Dj-1 T114p Mutant
Length = 194
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 97 SEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKK-QKESNRPYGAICASPAL 155
S D+ +++++ A GG GA+ + + + ++K+ K+ N+ G I A P L
Sbjct: 66 SADDFAKQYDIAIIP------GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGP-L 118
Query: 156 VLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVVDGNLITSRGPGTSMEFALAIVEK 213
+ GL K+ T P++ +L + ++ VV++ NLITS+GPGT+M F L ++E+
Sbjct: 119 TAKTSGL-PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQ 177
Query: 214 FFGRNK 219
++K
Sbjct: 178 VASKDK 183
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL--SDQSEIEN 186
+EK V + ++ E ++P +IC P +++ +LKG++ T+ + + + + I+
Sbjct: 81 NEKAVMITRRMFEDDKPVASICHGPQILISAK-VLKGRRGTSTITIRDDVINAGAEWIDA 139
Query: 187 RVVVDGNLITSRGPG 201
VVVDGN ++SR PG
Sbjct: 140 EVVVDGNWVSSRHPG 154
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
G A + + + +++Q R Y A+ +LVL GLL+GK+AT A L+
Sbjct: 76 GVGALMEDPQALAFIRQQAARAR-YVTSVATGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
I RVV DGNL+T G ++FAL + + F A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
G A + + + +++Q R Y ++ +LVL GLL+GK+AT A L+
Sbjct: 76 GVGALMEDPQALAFIRQQAARAR-YVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
I RVV DGNL+T G ++FAL + + F A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175
>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|B Chain B, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|C Chain C, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|D Chain D, Schizosaccharomyces Pombe Dj-1
Length = 194
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 97 SEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKK-QKESNRPYGAICASPAL 155
S D+ +++++ A GG GA+ + + + ++K+ K+ N+ G I A L
Sbjct: 66 SADDFAKQYDIAIIP------GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-TL 118
Query: 156 VLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVVDGNLITSRGPGTSMEFALAIVEK 213
+ GL K+ T P++ +L + ++ VV++ NLITS+GPGT+M F L ++E+
Sbjct: 119 TAKTSGL-PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQ 177
Query: 214 FFGRNK 219
++K
Sbjct: 178 VASKDK 183
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
G A + + + +++Q R Y + +LVL GLL+GK+AT A L+
Sbjct: 76 GVGALMEDPQALAFIRQQAARAR-YVTSVXTGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
I RVV DGNL+T G ++FAL + + F A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175
>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
Length = 194
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 97 SEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKK-QKESNRPYGAICASPAL 155
S D+ +++++ A GG GA+ + + + ++K+ K+ N+ G I A L
Sbjct: 66 SADDFAKQYDIAIIP------GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-VL 118
Query: 156 VLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVVDGNLITSRGPGTSMEFALAIVEK 213
+ GL K+ T P++ +L + ++ VV++ NLITS+GPGT+M F L ++E+
Sbjct: 119 TAKTSGL-PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQ 177
Query: 214 FFGRNK 219
++K
Sbjct: 178 VASKDK 183
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
GG G A A + + + + ++C S +L+L GLLKG KAT+ + +
Sbjct: 92 GGTDGTLAAASDAETLAFXADRGARAKYITSVC-SGSLILGAAGLLKGYKATSHWSCRDA 150
Query: 178 LSDQSEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKF 214
L+ I E RVV D N IT G ++F L+ V +
Sbjct: 151 LAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSXVAEL 189
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 124 QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPA--MCNKLSDQ 181
+ A +E ++N++K+ S +P +I +L G+LKG+K TA+PA + L
Sbjct: 295 EYLALNEHVLNIVKEFXNSEKPVASI-XHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGG 353
Query: 182 SEIE----NRVVVDGNLITS 197
+ +E +R DGNL+T
Sbjct: 354 TWLEPDPIDRCFTDGNLVTG 373
>pdb|3F5D|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Bacillus Subtilis
Length = 206
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 120 LGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLS 179
+GG ++KL++ +K + N P AIC + L +GLL T K
Sbjct: 70 IGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDF-LAKNGLLNNHSHTGNFVYLWKDY 128
Query: 180 DQ-----SEIENRVVVDGNLITSRGPGTSMEFALAIVE 212
Q S +E + V D NL+T+ G +EF I+E
Sbjct: 129 KQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILE 165
>pdb|3ER6|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|B Chain B, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|C Chain C, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|D Chain D, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|E Chain E, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|F Chain F, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
Length = 209
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 185 ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRN 218
E + ++DGN+ S GP + L IVE++FG++
Sbjct: 154 EQKALIDGNVYLSSGPYSHSSVMLEIVEEYFGKH 187
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 130 EKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLS--DQSEIENR 187
E + ++ ++ +P AI P L G+ +G K T++ ++ +L+ ++
Sbjct: 95 EGAMKFVRDMYDAGKPIAAIXHGP-WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE 153
Query: 188 VVVDGNLITSRGPGTSMEFALAIVEKF 214
V D ++TSR P F IVE+F
Sbjct: 154 CVTDKGVVTSRKPDDLPAFNKKIVEEF 180
>pdb|4HCJ|A Chain A, Crystal Structure Of ThijPFPI DOMAIN PROTEIN FROM
BRACHYSPIRA Murdochii
Length = 177
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 187 RVVVDGNLITSRGPGTSMEFALAIV 211
VVV GN++T+ GP +S +FA A+V
Sbjct: 146 NVVVSGNIVTANGPTSSKDFANAVV 170
>pdb|3BHN|A Chain A, Crystal Structure Of A Dj-1PFPI-Like Protein (Shew_2856)
From Shewanella Loihica Pv-4 At 1.76 A Resolution
Length = 236
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL 178
G G A + E + LK S + G+ICA + VL GLLKGKK T P L
Sbjct: 89 GYRGIPAALQDENFXSALKLDP-SRQLIGSICAG-SFVLHELGLLKGKKLTTNPDAKAVL 146
Query: 179 SDQ-SEIENR-VVVDGNLITSRGPGTSMEFALAIVEKFFGRNK 219
++++ +V++GN+ T+ G + + + E+ F K
Sbjct: 147 QGXGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSVK 189
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 60 LAVPNIEKFAHLIREQR-RIFQPXXXXXXXXXVRVIRKSEDNMSREFEKAARRLENARLG 118
L VP IE+ H+I E + +P VI + N+ + + L++ +L
Sbjct: 203 LHVPGIEQNTHIINEAAFNLMKPGAI--------VINTARPNL-IDTQAMLSNLKSGKLA 253
Query: 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160
G+G ++E L+N+ K + + + P +VL PH
Sbjct: 254 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPH 295
>pdb|3UXQ|I Chain I, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|I Chain I, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes
Length = 148
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 43 LTTVAPGYFRNHLMPKLLAV 62
+ V PGY RN+L+P+ LAV
Sbjct: 18 VVDVKPGYARNYLLPRGLAV 37
>pdb|1VSA|G Chain G, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|G Chain G, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|I Chain I, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|I Chain I, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|I Chain I, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|I Chain I, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WH4|I Chain I, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3MRZ|H Chain H, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3ms0. Molecule A In The Same Asymmetric Unit Is
Deposited As 3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|H Chain H, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3mr8. Molecule B In The Same Asymmetric Unit Is
Deposited As 3mrz (50s) And 3ms0 (30s)
Length = 148
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 43 LTTVAPGYFRNHLMPKLLAV 62
+ V PGY RN+L+P+ LAV
Sbjct: 18 VVDVKPGYARNYLLPRGLAV 37
>pdb|2V47|I Chain I, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|I Chain I, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|2WDI|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|I Chain I, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3HUX|I Chain I, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|I Chain I, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|3KIR|I Chain I, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|I Chain I, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|I Chain I, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|I Chain I, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|I Chain I, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule I
pdb|3KNK|I Chain I, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|I Chain I, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|I Chain I, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|K Chain K, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|K Chain K, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|K Chain K, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule
B. The 30s Subunit Can Be Found In Pdb Entry 3i9b.
Molecule A In The S Asymmetric Unit Is Deposited As
3i9d (30s) And 3i9e (50s)
pdb|3I9E|K Chain K, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule
A. The 30s Subunit Can Be Found In Pdb Entry 3i9d.
Molecule B In The S Asymmetric Unit Is Deposited As
3i9b (30s) And 3i9c (50s)
pdb|2X9S|I Chain I, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|I Chain I, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|I Chain I, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|I Chain I, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|I Chain I, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHK|I Chain I, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHZ|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UYG|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UZ1|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin
pdb|3UZ2|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin.
pdb|3UZ8|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex
pdb|3UZH|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex.
pdb|3UZK|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex With Paromomycin
pdb|3UZN|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-cognate Trna-tyr Complex With Paromomycin
pdb|4DHA|I Chain I, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|I Chain I, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|I Chain I, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|I Chain I, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|I Chain I, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|I Chain I, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|I Chain I, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 1st Ribosome In The Asu
pdb|3V2F|I Chain I, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 2nd Ribosome In The Asu
pdb|2J01|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of
4). This File Contains The 50s Subunit From Molecule I.
pdb|2J03|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of
4). This File Contains The 50s Subunit From Molecule
Ii.
pdb|4G5L|K Chain K, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|K Chain K, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|K Chain K, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|K Chain K, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 148
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 43 LTTVAPGYFRNHLMPKLLAV 62
+ V PGY RN+L+P+ LAV
Sbjct: 18 VVDVKPGYARNYLLPRGLAV 37
>pdb|2HGJ|K Chain K, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|K Chain K, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|K Chain K, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr
Length = 148
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 43 LTTVAPGYFRNHLMPKLLAV 62
+ V PGY RN+L+P+ LAV
Sbjct: 18 VVDVKPGYARNYLLPRGLAV 37
>pdb|3PYO|H Chain H, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s
Ribosome.
pdb|3PYR|H Chain H, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|H Chain H, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|H Chain H, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 145
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 43 LTTVAPGYFRNHLMPKLLAV 62
+ V PGY RN+L+P+ LAV
Sbjct: 18 VVDVKPGYARNYLLPRGLAV 37
>pdb|3TVE|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 146
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 43 LTTVAPGYFRNHLMPKLLAV 62
+ V PGY RN+L+P+ LAV
Sbjct: 18 VVDVKPGYARNYLLPRGLAV 37
>pdb|3FIN|I Chain I, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 146
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 43 LTTVAPGYFRNHLMPKLLAV 62
+ V PGY RN+L+P+ LAV
Sbjct: 18 VVDVKPGYARNYLLPRGLAV 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,008,497
Number of Sequences: 62578
Number of extensions: 208331
Number of successful extensions: 497
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 58
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)