Query 026831
Match_columns 232
No_of_seqs 175 out of 2060
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4977 Transcriptional regula 100.0 3.9E-35 8.5E-40 258.9 14.0 180 37-230 8-198 (328)
2 TIGR01383 not_thiJ DJ-1 family 100.0 2.7E-33 5.9E-38 228.6 15.2 172 41-225 1-178 (179)
3 cd03139 GATase1_PfpI_2 Type 1 100.0 5.8E-33 1.3E-37 227.2 13.6 174 42-230 1-183 (183)
4 cd03138 GATase1_AraC_2 AraC tr 100.0 4.4E-33 9.6E-38 230.5 12.5 176 42-230 1-195 (195)
5 cd03137 GATase1_AraC_1 AraC tr 100.0 6.8E-33 1.5E-37 227.9 12.9 175 42-230 1-187 (187)
6 cd03136 GATase1_AraC_ArgR_like 100.0 6.8E-33 1.5E-37 227.8 12.8 174 42-230 1-185 (185)
7 cd03135 GATase1_DJ-1 Type 1 gl 100.0 1.2E-30 2.5E-35 209.5 13.1 160 42-214 1-163 (163)
8 PRK11574 oxidative-stress-resi 100.0 9.4E-30 2E-34 211.2 16.6 183 39-231 2-189 (196)
9 PRK09393 ftrA transcriptional 100.0 2.7E-30 6E-35 229.6 13.6 177 39-230 9-197 (322)
10 PF13278 DUF4066: Putative ami 100.0 2E-30 4.4E-35 209.6 10.9 154 45-212 1-166 (166)
11 TIGR01382 PfpI intracellular p 100.0 2.2E-28 4.8E-33 197.4 13.1 159 41-214 1-165 (166)
12 cd03134 GATase1_PfpI_like A ty 100.0 2.5E-28 5.4E-33 196.9 12.4 157 41-212 1-164 (165)
13 cd03140 GATase1_PfpI_3 Type 1 100.0 1E-27 2.2E-32 194.9 12.3 157 42-214 1-166 (170)
14 cd03169 GATase1_PfpI_1 Type 1 99.9 4.9E-27 1.1E-31 192.5 12.7 165 41-214 1-180 (180)
15 KOG2764 Putative transcription 99.9 1.4E-24 3E-29 180.3 14.2 181 39-231 5-190 (247)
16 COG0693 ThiJ Putative intracel 99.9 9.2E-22 2E-26 162.1 12.8 169 39-218 2-186 (188)
17 cd03141 GATase1_Hsp31_like Typ 99.9 2.5E-22 5.4E-27 170.1 9.5 160 47-214 17-221 (221)
18 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 6.4E-21 1.4E-25 151.5 12.4 134 69-214 2-146 (147)
19 cd03147 GATase1_Ydr533c_like T 99.8 1.6E-20 3.5E-25 160.0 9.8 157 48-214 20-231 (231)
20 PRK04155 chaperone protein Hch 99.8 8.7E-20 1.9E-24 159.8 12.9 170 36-216 46-283 (287)
21 cd03148 GATase1_EcHsp31_like T 99.8 3.3E-19 7.3E-24 152.0 11.4 164 43-215 16-232 (232)
22 cd03132 GATase1_catalase Type 99.7 2.5E-17 5.5E-22 129.7 9.8 110 40-163 2-114 (142)
23 PRK11780 isoprenoid biosynthes 99.7 4.8E-17 1E-21 137.4 11.6 157 40-199 2-191 (217)
24 cd03133 GATase1_ES1 Type 1 glu 99.7 5.5E-16 1.2E-20 130.4 9.6 152 46-200 10-189 (213)
25 PRK11249 katE hydroperoxidase 99.3 2.9E-12 6.2E-17 124.1 9.1 113 38-164 596-711 (752)
26 PRK03619 phosphoribosylformylg 98.8 1.1E-08 2.3E-13 86.7 7.5 57 110-167 41-102 (219)
27 cd01740 GATase1_FGAR_AT Type 1 98.5 1.6E-07 3.4E-12 80.5 5.6 87 110-198 43-136 (238)
28 TIGR01737 FGAM_synth_I phospho 98.4 9.3E-07 2E-11 75.2 7.5 56 110-166 40-100 (227)
29 PRK01175 phosphoribosylformylg 98.4 1.1E-06 2.3E-11 76.4 7.2 98 40-165 4-110 (261)
30 COG0047 PurL Phosphoribosylfor 97.9 2.5E-05 5.4E-10 65.8 6.1 53 111-165 44-102 (231)
31 cd01653 GATase1 Type 1 glutami 97.9 3E-05 6.6E-10 55.6 5.8 91 42-157 1-92 (115)
32 PRK13526 glutamine amidotransf 97.7 4.6E-05 9.9E-10 62.5 4.0 55 108-165 37-97 (179)
33 TIGR03800 PLP_synth_Pdx2 pyrid 97.6 8.8E-05 1.9E-09 61.2 4.2 52 108-160 34-86 (184)
34 cd03130 GATase1_CobB Type 1 gl 97.6 8.9E-05 1.9E-09 61.7 4.3 50 109-159 39-90 (198)
35 PRK13527 glutamine amidotransf 97.5 0.00022 4.8E-09 59.3 6.0 52 108-160 41-93 (200)
36 cd03128 GAT_1 Type 1 glutamine 97.5 0.00033 7.1E-09 47.8 5.6 44 110-153 46-89 (92)
37 COG3155 ElbB Uncharacterized p 97.4 0.0018 3.9E-08 52.0 9.4 100 110-216 85-204 (217)
38 PRK13143 hisH imidazole glycer 97.1 0.00074 1.6E-08 56.2 4.9 52 108-160 36-87 (200)
39 PRK13525 glutamine amidotransf 97.1 0.00081 1.8E-08 55.6 4.9 53 107-160 35-88 (189)
40 PF07685 GATase_3: CobB/CobQ-l 97.1 0.00061 1.3E-08 54.6 3.9 51 109-160 6-58 (158)
41 cd01750 GATase1_CobQ Type 1 gl 96.9 0.00063 1.4E-08 56.4 2.9 50 110-160 37-88 (194)
42 PLN02832 glutamine amidotransf 96.8 0.0018 4E-08 55.8 5.0 54 106-160 34-88 (248)
43 cd01748 GATase1_IGP_Synthase T 96.8 0.0016 3.5E-08 54.0 4.4 52 107-160 33-87 (198)
44 cd01749 GATase1_PB Glutamine A 96.8 0.0018 3.9E-08 53.2 4.5 53 107-160 32-85 (183)
45 COG0311 PDX2 Predicted glutami 96.7 0.0018 4E-08 53.0 4.0 55 104-159 32-87 (194)
46 PF13507 GATase_5: CobB/CobQ-l 96.7 0.0027 5.9E-08 55.1 5.2 56 110-166 46-112 (259)
47 PRK01077 cobyrinic acid a,c-di 96.7 0.0019 4.2E-08 60.3 4.3 50 109-159 286-337 (451)
48 PRK13141 hisH imidazole glycer 96.6 0.0021 4.5E-08 53.6 3.6 53 107-160 34-88 (205)
49 PF01174 SNO: SNO glutamine am 96.6 0.0016 3.5E-08 53.6 2.7 52 107-159 30-83 (188)
50 TIGR01857 FGAM-synthase phosph 96.6 0.0062 1.3E-07 63.0 7.3 108 38-166 976-1096(1239)
51 PRK13181 hisH imidazole glycer 96.1 0.0051 1.1E-07 51.1 3.3 53 107-160 34-88 (199)
52 TIGR00379 cobB cobyrinic acid 95.8 0.0095 2.1E-07 55.7 4.1 50 109-159 285-336 (449)
53 CHL00188 hisH imidazole glycer 95.8 0.012 2.5E-07 49.6 4.2 60 109-170 38-109 (210)
54 PRK00784 cobyric acid synthase 95.8 0.0089 1.9E-07 56.5 3.9 53 106-159 286-340 (488)
55 cd01741 GATase1_1 Subgroup of 95.6 0.013 2.8E-07 47.9 3.6 50 110-160 46-97 (188)
56 TIGR00313 cobQ cobyric acid sy 95.6 0.014 3.1E-07 55.0 4.3 51 108-159 282-334 (475)
57 TIGR01735 FGAM_synt phosphorib 95.6 0.033 7.1E-07 58.4 7.3 55 111-166 1101-1167(1310)
58 PRK08250 glutamine amidotransf 95.5 0.016 3.5E-07 49.5 4.0 49 111-160 46-100 (235)
59 PRK05297 phosphoribosylformylg 95.5 0.042 9.1E-07 57.6 7.5 55 110-165 1080-1146(1290)
60 PRK07053 glutamine amidotransf 95.4 0.015 3.3E-07 49.6 3.5 49 111-160 48-99 (234)
61 PRK13146 hisH imidazole glycer 95.4 0.019 4.2E-07 48.1 4.1 55 106-161 37-94 (209)
62 cd01744 GATase1_CPSase Small c 95.4 0.024 5.2E-07 46.2 4.4 47 110-160 39-85 (178)
63 PRK14004 hisH imidazole glycer 95.3 0.031 6.8E-07 47.0 5.0 55 104-160 31-88 (210)
64 cd03144 GATase1_ScBLP_like Typ 95.3 0.017 3.7E-07 44.0 3.1 46 110-158 44-90 (114)
65 PHA03366 FGAM-synthase; Provis 95.2 0.057 1.2E-06 56.7 7.5 97 38-164 1027-1137(1304)
66 TIGR01855 IMP_synth_hisH imida 95.2 0.029 6.2E-07 46.5 4.4 49 110-160 36-87 (196)
67 PRK13170 hisH imidazole glycer 95.1 0.026 5.7E-07 46.8 3.9 51 106-160 34-86 (196)
68 COG1797 CobB Cobyrinic acid a, 94.9 0.025 5.4E-07 52.3 3.4 49 110-159 288-338 (451)
69 PLN02617 imidazole glycerol ph 94.8 0.043 9.3E-07 52.5 4.9 52 107-160 41-95 (538)
70 cd01745 GATase1_2 Subgroup of 94.6 0.057 1.2E-06 44.4 4.7 50 110-160 53-116 (189)
71 COG0118 HisH Glutamine amidotr 94.3 0.091 2E-06 43.8 5.1 57 101-159 30-89 (204)
72 PRK13152 hisH imidazole glycer 94.3 0.11 2.3E-06 43.2 5.7 52 107-160 34-89 (201)
73 TIGR00888 guaA_Nterm GMP synth 94.2 0.061 1.3E-06 44.1 4.1 44 112-160 43-86 (188)
74 PRK13896 cobyrinic acid a,c-di 94.2 0.048 1E-06 50.8 3.8 49 109-159 273-323 (433)
75 PRK13142 hisH imidazole glycer 94.2 0.068 1.5E-06 44.4 4.2 51 106-160 33-86 (192)
76 PRK05665 amidotransferase; Pro 94.2 0.052 1.1E-06 46.6 3.6 50 110-160 57-107 (240)
77 PRK09065 glutamine amidotransf 94.1 0.044 9.5E-07 46.9 3.1 50 110-160 54-104 (237)
78 PF00117 GATase: Glutamine ami 94.1 0.041 8.9E-07 44.9 2.7 47 110-160 42-88 (192)
79 PLN03206 phosphoribosylformylg 93.9 0.19 4.2E-06 52.7 7.8 55 111-166 1083-1148(1307)
80 PRK06278 cobyrinic acid a,c-di 93.8 0.075 1.6E-06 50.1 4.2 51 105-160 31-81 (476)
81 cd03146 GAT1_Peptidase_E Type 93.8 0.079 1.7E-06 44.4 4.0 53 105-159 75-129 (212)
82 PRK05282 (alpha)-aspartyl dipe 93.6 0.091 2E-06 45.0 4.1 51 108-159 77-128 (233)
83 PRK06490 glutamine amidotransf 93.4 0.064 1.4E-06 46.0 2.9 49 111-160 53-102 (239)
84 PRK07765 para-aminobenzoate sy 93.2 0.094 2E-06 44.1 3.5 47 110-160 46-92 (214)
85 PRK12564 carbamoyl phosphate s 93.0 0.23 5E-06 45.2 6.0 47 110-160 218-264 (360)
86 PRK06895 putative anthranilate 92.8 0.16 3.6E-06 41.7 4.3 46 110-160 43-88 (190)
87 PRK11366 puuD gamma-glutamyl-g 92.7 0.31 6.7E-06 42.1 6.1 50 110-160 61-123 (254)
88 KOG3210 Imidazoleglycerol-phos 92.5 0.25 5.4E-06 40.2 4.8 54 104-158 50-105 (226)
89 cd01743 GATase1_Anthranilate_S 92.2 0.3 6.5E-06 39.7 5.1 46 110-160 42-87 (184)
90 TIGR01739 tegu_FGAM_synt herpe 91.5 0.57 1.2E-05 49.1 7.3 53 112-165 975-1039(1202)
91 PRK00758 GMP synthase subunit 91.5 0.23 5E-06 40.5 3.7 46 107-160 37-83 (184)
92 PF09825 BPL_N: Biotin-protein 91.0 0.31 6.8E-06 44.4 4.4 48 110-159 49-96 (367)
93 PRK07567 glutamine amidotransf 91.0 0.34 7.4E-06 41.6 4.4 49 111-160 52-109 (242)
94 COG0518 GuaA GMP synthase - Gl 90.9 0.22 4.7E-06 41.6 3.1 47 112-160 47-95 (198)
95 PRK05670 anthranilate synthase 90.8 0.52 1.1E-05 38.6 5.1 45 111-160 44-88 (189)
96 TIGR00566 trpG_papA glutamine 90.7 0.29 6.3E-06 40.2 3.5 45 111-160 44-88 (188)
97 cd01746 GATase1_CTP_Synthase T 90.6 0.36 7.8E-06 41.3 4.2 44 110-158 55-98 (235)
98 TIGR01368 CPSaseIIsmall carbam 90.3 0.64 1.4E-05 42.3 5.7 45 111-160 215-259 (358)
99 PRK06186 hypothetical protein; 89.7 0.42 9.2E-06 40.8 3.8 41 109-153 52-92 (229)
100 cd01747 GATase1_Glutamyl_Hydro 89.5 0.71 1.5E-05 40.4 5.2 55 104-159 47-107 (273)
101 PRK12838 carbamoyl phosphate s 89.2 0.8 1.7E-05 41.6 5.4 46 110-160 208-253 (354)
102 cd01742 GATase1_GMP_Synthase T 88.8 0.36 7.9E-06 39.0 2.7 46 110-160 41-86 (181)
103 COG2071 Predicted glutamine am 88.7 1.1 2.5E-05 38.4 5.7 48 111-160 61-123 (243)
104 PRK05380 pyrG CTP synthetase; 87.4 0.75 1.6E-05 43.9 4.2 46 108-158 341-386 (533)
105 CHL00197 carA carbamoyl-phosph 86.2 1.6 3.4E-05 40.1 5.6 47 110-160 233-279 (382)
106 PF03575 Peptidase_S51: Peptid 86.0 1 2.3E-05 35.5 3.8 51 108-159 33-84 (154)
107 PF07722 Peptidase_C26: Peptid 84.4 2.3 5E-05 35.8 5.4 55 104-159 51-121 (217)
108 cd03145 GAT1_cyanophycinase Ty 84.3 2.9 6.4E-05 35.1 6.0 50 108-158 81-131 (217)
109 PRK13566 anthranilate synthase 84.2 1.9 4.1E-05 42.9 5.4 45 111-160 570-614 (720)
110 cd03129 GAT1_Peptidase_E_like 84.1 1.9 4E-05 35.9 4.6 51 107-159 77-129 (210)
111 CHL00101 trpG anthranilate syn 84.0 0.84 1.8E-05 37.5 2.5 45 111-160 44-88 (190)
112 PRK08007 para-aminobenzoate sy 83.9 0.98 2.1E-05 37.1 2.8 45 111-160 44-88 (187)
113 COG1492 CobQ Cobyric acid synt 83.7 2.2 4.9E-05 40.2 5.4 49 110-159 290-340 (486)
114 PRK08857 para-aminobenzoate sy 83.1 1.2 2.7E-05 36.5 3.2 45 111-160 44-88 (193)
115 PLN02347 GMP synthetase 82.3 2.3 4.9E-05 40.9 5.0 48 111-160 54-102 (536)
116 PRK05637 anthranilate synthase 81.9 3.1 6.8E-05 34.8 5.2 45 111-160 45-89 (208)
117 PLN02327 CTP synthase 81.7 1.9 4.2E-05 41.4 4.2 46 108-158 360-405 (557)
118 PRK06774 para-aminobenzoate sy 81.1 1.9 4.2E-05 35.2 3.6 45 111-160 44-88 (191)
119 PRK07649 para-aminobenzoate/an 78.9 2.3 4.9E-05 35.2 3.3 45 111-160 44-88 (195)
120 PLN02771 carbamoyl-phosphate s 77.0 5.6 0.00012 37.0 5.6 45 111-160 282-326 (415)
121 TIGR01815 TrpE-clade3 anthrani 76.1 2.5 5.3E-05 42.1 3.2 45 111-160 560-604 (717)
122 COG0504 PyrG CTP synthase (UTP 76.0 4.3 9.4E-05 38.4 4.6 39 111-153 344-382 (533)
123 TIGR00337 PyrG CTP synthase. C 74.4 3.1 6.7E-05 39.8 3.3 43 111-158 344-386 (525)
124 KOG2387 CTP synthase (UTP-ammo 74.0 7.5 0.00016 36.4 5.5 49 104-158 357-405 (585)
125 COG0505 CarA Carbamoylphosphat 72.4 10 0.00022 34.5 5.9 55 102-160 210-266 (368)
126 PLN02335 anthranilate synthase 68.8 5.3 0.00011 33.7 3.2 45 111-160 63-107 (222)
127 PRK00074 guaA GMP synthase; Re 67.8 3.8 8.3E-05 39.1 2.3 45 111-160 47-91 (511)
128 KOG0623 Glutamine amidotransfe 67.5 10 0.00022 34.5 4.7 45 110-154 39-85 (541)
129 COG3442 Predicted glutamine am 64.5 8.4 0.00018 32.8 3.4 29 130-159 74-102 (250)
130 COG4285 Uncharacterized conser 64.4 7.2 0.00016 33.1 3.0 42 112-154 51-93 (253)
131 PRK14607 bifunctional glutamin 63.0 6.4 0.00014 37.8 2.9 45 111-160 45-89 (534)
132 TIGR02069 cyanophycinase cyano 62.0 13 0.00028 32.1 4.3 47 108-154 80-127 (250)
133 TIGR01823 PabB-fungal aminodeo 57.4 11 0.00023 37.8 3.4 46 110-160 53-102 (742)
134 KOG0370 Multifunctional pyrimi 56.5 16 0.00035 37.5 4.4 54 102-160 203-256 (1435)
135 COG3340 PepE Peptidase E [Amin 53.8 20 0.00043 30.4 3.9 42 110-153 84-128 (224)
136 KOG3179 Predicted glutamine sy 51.8 24 0.00053 29.8 4.1 108 107-217 56-209 (245)
137 PRK09522 bifunctional glutamin 51.0 19 0.00042 34.5 3.9 45 111-160 49-93 (531)
138 COG0512 PabA Anthranilate/para 49.3 44 0.00096 27.7 5.3 65 111-180 46-119 (191)
139 PRK05368 homoserine O-succinyl 44.9 28 0.00062 31.0 3.8 52 104-159 91-150 (302)
140 cd05014 SIS_Kpsf KpsF-like pro 39.1 42 0.00091 24.8 3.5 38 110-153 47-84 (128)
141 PF01058 Oxidored_q6: NADH ubi 35.3 24 0.00051 27.1 1.6 40 110-154 45-84 (131)
142 PF09897 DUF2124: Uncharacteri 33.8 23 0.0005 28.1 1.3 46 111-161 81-127 (147)
143 cd05008 SIS_GlmS_GlmD_1 SIS (S 31.9 63 0.0014 23.8 3.4 37 110-152 46-82 (126)
144 COG1182 AcpD Acyl carrier prot 29.0 1.3E+02 0.0029 25.1 5.1 41 123-169 97-137 (202)
145 cd04795 SIS SIS domain. SIS (S 26.6 92 0.002 21.0 3.3 22 129-150 60-81 (87)
146 PLN02889 oxo-acid-lyase/anthra 26.3 68 0.0015 33.1 3.4 47 111-160 132-178 (918)
147 PRK14650 UDP-N-acetylenolpyruv 25.7 1.8E+02 0.0039 25.9 5.7 76 129-216 42-117 (302)
148 TIGR00441 gmhA phosphoheptose 25.2 97 0.0021 24.2 3.6 37 110-152 79-115 (154)
149 PF13580 SIS_2: SIS domain; PD 24.7 86 0.0019 24.0 3.1 34 110-149 103-136 (138)
150 cd05710 SIS_1 A subgroup of th 24.0 1E+02 0.0022 22.9 3.3 37 110-152 47-83 (120)
151 TIGR03127 RuMP_HxlB 6-phospho 21.8 1.1E+02 0.0024 24.2 3.4 37 110-152 72-108 (179)
152 PRK00414 gmhA phosphoheptose i 21.3 1.2E+02 0.0026 24.8 3.5 37 110-152 111-147 (192)
153 COG4090 Uncharacterized protei 21.3 82 0.0018 24.7 2.3 53 104-161 79-132 (154)
No 1
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=100.00 E-value=3.9e-35 Score=258.89 Aligned_cols=180 Identities=20% Similarity=0.302 Sum_probs=157.7
Q ss_pred CCccEEEEEecCCccccccc----chhhhccCCCce---EEEEeccccccCCccccccccceEEeeccCCccchhHHHhh
Q 026831 37 RRLEVILTTVAPGYFRNHLM----PKLLAVPNIEKF---AHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA 109 (232)
Q Consensus 37 ~~~~~I~iLl~~gf~~~el~----p~~~a~~~~~~~---~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~ 109 (232)
.++.+|+||++|+|.++.++ |+.+++...+.. +..++.++. |+.++ +|+.+. ++..+++.+
T Consensus 8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~---~V~ss---~G~~i~------~d~~~~~~~ 75 (328)
T COG4977 8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG---PVRSS---SGLSIA------PDGGLEAAP 75 (328)
T ss_pred CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC---CcccC---CCceEe------cCCcccccC
Confidence 55689999999999999997 666776554442 567887777 88876 599999 999999987
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----ccCC
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SEIE 185 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~~d 185 (232)
+.|.++++||.. .....+.+++..|||+.+++|..+++||+| +|+||++||||||+||+||.+.+.|++. ...+
T Consensus 76 ~~~~v~v~~g~~-~~~~~~~~~l~~~Lr~~~~~G~~l~gictG-af~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~ 153 (328)
T COG4977 76 PIDILPVCGGLG-PERPVNAPALLAWLRRAARRGARLGGLCTG-AFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTD 153 (328)
T ss_pred cceEEEEecCCC-cccccchHHHHHHHHHHHhcCCeEEEehHh-HHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCC
Confidence 888899989863 443344489999999999999999999999 5899999999999999999999999985 3678
Q ss_pred CcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831 186 NRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230 (232)
Q Consensus 186 ~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~ 230 (232)
+.|++||++|||+|+++++||||+||++.+|+++|.+|+++|+++
T Consensus 154 ~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~ 198 (328)
T COG4977 154 RLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVD 198 (328)
T ss_pred ceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999886
No 2
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=2.7e-33 Score=228.55 Aligned_cols=172 Identities=35% Similarity=0.541 Sum_probs=147.0
Q ss_pred EEEEEecCCccccccc-chhhhccCCCceE--EEEeccccccCCccccccccceEEeeccCCccchhHHHh--hhcccee
Q 026831 41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFA--HLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA--ARRLENA 115 (232)
Q Consensus 41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~--~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~--~~~d~li 115 (232)
||+||++|||+++|++ |...+ ...+..+ .+++.+++ .++.++ .|+++. ++..++++ ++.|.||
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l-~~a~~~~~~~~~s~~g~--~~v~~~---~g~~v~------~~~~~~~~~~~~~D~l~ 68 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVL-RRAGIKVTVAIVGLNGK--LPVKGS---RGVKIL------ADASLEDVDLEEFDAIV 68 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHH-HHCCCEEEEEEeccCCC--cceEcC---CCCEEe------CCCCHHHCCcccCCEEE
Confidence 6899999999999999 88887 3334333 34777653 155554 599999 88889884 4578899
Q ss_pred ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCcc-CCCcEEEcCCE
Q 026831 116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSE-IENRVVVDGNL 194 (232)
Q Consensus 116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~-~d~~~v~Dg~~ 194 (232)
||||.........++++.+|||++++++++|+++|+|+ ++||++|||+||++|+||...+.+++..+ .++.+++||++
T Consensus 69 v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i 147 (179)
T TIGR01383 69 LPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNI 147 (179)
T ss_pred ECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCE
Confidence 99996334445678999999999999999999999995 88999999999999999999999988776 58999999999
Q ss_pred EEcCChhhHHHHHHHHHHHhcCHHHHHHHHH
Q 026831 195 ITSRGPGTSMEFALAIVEKFFGRNKALELAK 225 (232)
Q Consensus 195 iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~ 225 (232)
+||+|+.+++|+++++|++++|++.|++|++
T Consensus 148 ~T~~g~~a~~d~~l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 148 ITSRGPGTAIEFALALVELLCGKEKAQEVAA 178 (179)
T ss_pred EECCChhhHHHHHHHHHHHhcCHHHHHHhhc
Confidence 9999999999999999999999999999985
No 3
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=5.8e-33 Score=227.20 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=153.4
Q ss_pred EEEEecCCccccccc-chhhhccCCC-----ceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhcccee
Q 026831 42 ILTTVAPGYFRNHLM-PKLLAVPNIE-----KFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENA 115 (232)
Q Consensus 42 I~iLl~~gf~~~el~-p~~~a~~~~~-----~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~li 115 (232)
|+||++|||++.+++ |.+++ ...+ ..+.+++.+++ ++.++ .|+.+. ++..+++.++.|.|+
T Consensus 1 i~ill~~gf~~~~~~~~~d~~-~~a~~~~~~~~v~~vs~~~~---~v~~~---~g~~i~------~d~~~~~~~~~D~lv 67 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVF-GRAPRLAAPFEVFLVSETGG---PVSSR---SGLTVL------PDTSFADPPDLDVLL 67 (183)
T ss_pred CEEEEeCCCCEehheeHHHHH-HHhhccCCCEEEEEEECCCC---ceEeC---CCCEEc------CCcccccCCCCCEEE
Confidence 689999999999999 77777 3333 66888888876 77765 499999 888888776788899
Q ss_pred ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc--c-CCCcEEEcC
Q 026831 116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS--E-IENRVVVDG 192 (232)
Q Consensus 116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~--~-~d~~~v~Dg 192 (232)
||||. +......++.+++||+++++++++|+++|+|+ ++|+++|+|+||++|+||...+.+++.+ + .++.+++||
T Consensus 68 ipgg~-~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg 145 (183)
T cd03139 68 VPGGG-GTRALVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDG 145 (183)
T ss_pred ECCCc-chhhhccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecC
Confidence 99996 35546789999999999999999999999995 7899999999999999999999998753 3 889999999
Q ss_pred CEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831 193 NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230 (232)
Q Consensus 193 ~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~ 230 (232)
+++||+|+.+++|+++++|++++|++.|+++++.|+++
T Consensus 146 ~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~~~~ 183 (183)
T cd03139 146 NIWTSGGVSAGIDMALALVARLFGEELAQAVALLIEYD 183 (183)
T ss_pred CEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999874
No 4
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=4.4e-33 Score=230.55 Aligned_cols=176 Identities=22% Similarity=0.252 Sum_probs=150.9
Q ss_pred EEEEecCCccccccc-chhhhc---cC--------CCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh
Q 026831 42 ILTTVAPGYFRNHLM-PKLLAV---PN--------IEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA 109 (232)
Q Consensus 42 I~iLl~~gf~~~el~-p~~~a~---~~--------~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~ 109 (232)
|+||+||||.+++++ |.+++. .. .+..+.+++.+++ ++.++ .|+++. ++.++++.+
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~---~v~s~---~g~~i~------~d~~~~~~~ 68 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG---PVLLA---GGILIL------PDATLADVP 68 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC---eeecC---CCceec------ccccccccC
Confidence 689999999999999 766552 11 2456788888876 77665 599999 888888777
Q ss_pred hccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc----c
Q 026831 110 RRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS----E 183 (232)
Q Consensus 110 ~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~----~ 183 (232)
+.|.||||||..... .+..++.+++||+++++++++|++||+|+ ++|+++|+|+||++|+||...+.|++.+ +
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~ 147 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGV-FLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRL 147 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHH-HHHHHccCcCCCeeeehHhhHHHHHHHCCCcee
Confidence 788899999864333 46689999999999999999999999996 7899999999999999999999988742 3
Q ss_pred C-CCcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831 184 I-ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230 (232)
Q Consensus 184 ~-d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~ 230 (232)
. +..+++||+++||+|+.+++|+++++|++++|+++|++|++.|+++
T Consensus 148 ~~~~~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 148 DPDRVVVTDGNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred ccCcEEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 3 5899999999999999999999999999999999999999999864
No 5
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=6.8e-33 Score=227.88 Aligned_cols=175 Identities=20% Similarity=0.261 Sum_probs=150.6
Q ss_pred EEEEecCCccccccc-chhhhccC------CCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccce
Q 026831 42 ILTTVAPGYFRNHLM-PKLLAVPN------IEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLEN 114 (232)
Q Consensus 42 I~iLl~~gf~~~el~-p~~~a~~~------~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~l 114 (232)
|+||++|||++.|++ |.+++... ....+.+++.+++ ++.++ .|+++. ++..+++.++.|.|
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~---~v~~~---~g~~v~------~d~~~~~~~~~D~l 68 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG---PVRSS---SGLSLV------ADAGLDALAAADTV 68 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC---ceeec---CCcEEE------cCcCccccCCCCEE
Confidence 689999999999999 77776221 1256788888776 77665 499999 88888876678889
Q ss_pred eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----cc-CCCcEE
Q 026831 115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SE-IENRVV 189 (232)
Q Consensus 115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~-~d~~~v 189 (232)
+||||.. ......++.+.+|||++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++. .+ .+..++
T Consensus 69 iipGg~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v 146 (187)
T cd03137 69 IVPGGPD-VDGRPPPPALLAALRRAAARGARVASVCTGA-FVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYV 146 (187)
T ss_pred EECCCcc-cccccCCHHHHHHHHHHHhcCCEEEEECHHH-HHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEE
Confidence 9999963 4446789999999999999999999999995 789999999999999999999999874 23 346789
Q ss_pred EcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831 190 VDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230 (232)
Q Consensus 190 ~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~ 230 (232)
+||+++||+|+.+++|+++++|++++|++.|+++++.|+++
T Consensus 147 ~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~ 187 (187)
T cd03137 147 DDGNVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRLVVP 187 (187)
T ss_pred ecCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999998764
No 6
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=100.00 E-value=6.8e-33 Score=227.78 Aligned_cols=174 Identities=20% Similarity=0.233 Sum_probs=151.2
Q ss_pred EEEEecCCccccccc-chhhhcc---C---CCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccce
Q 026831 42 ILTTVAPGYFRNHLM-PKLLAVP---N---IEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLEN 114 (232)
Q Consensus 42 I~iLl~~gf~~~el~-p~~~a~~---~---~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~l 114 (232)
|+|++||||.++|++ |.+++.. . ....+.+++.+++ ++.++ .|+++. ++..+++.++.|.|
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~---~v~~~---~g~~i~------~d~~~~~~~~~D~l 68 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA---PVTSS---NGLRVA------PDAALEDAPPLDYL 68 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC---eeecC---CCcEEe------CCccccccCCCCEE
Confidence 689999999999998 7776621 1 1245778888776 77665 499999 88888776678889
Q ss_pred eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----ccCCCcEEE
Q 026831 115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SEIENRVVV 190 (232)
Q Consensus 115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~~d~~~v~ 190 (232)
|||||.. .. ...++++++||+++++++++|+++|+|+ ++|+++|+|+||++|+||...+.|++. .+.++.++.
T Consensus 69 iipgg~~-~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~ 145 (185)
T cd03136 69 FVVGGLG-AR-RAVTPALLAWLRRAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEI 145 (185)
T ss_pred EEeCCCC-cc-ccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEE
Confidence 9999963 33 6789999999999999999999999995 789999999999999999999999874 467889999
Q ss_pred cCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831 191 DGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230 (232)
Q Consensus 191 Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~ 230 (232)
||+++||+|+.+++|+++++|++++|++.|+++++.|+++
T Consensus 146 dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 146 DGDRLTCAGGTAALDLMLELIARDHGAALAARVAEQFLHD 185 (185)
T ss_pred cCCEEEeccHHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999875
No 7
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.97 E-value=1.2e-30 Score=209.48 Aligned_cols=160 Identities=36% Similarity=0.533 Sum_probs=138.9
Q ss_pred EEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh--hhccceeccC
Q 026831 42 ILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA--ARRLENARLG 118 (232)
Q Consensus 42 I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~--~~~d~livpG 118 (232)
|+||++|||.+.|+. |.+++ ...+..+.+++.+++ ++... +.|+.+. ++..+++. ++.|.|||||
T Consensus 1 v~il~~~gf~~~e~~~~~~~~-~~a~~~v~~vs~~~~---~~~~~--~~g~~v~------~~~~~~~~~~~~~D~liipG 68 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVL-RRAGIEVTTASLEKK---LAVGS--SHGIKVK------ADKTLSDVNLDDYDAIVIPG 68 (163)
T ss_pred CEEEecCCcchHHHHHHHHHH-HHCCCEEEEEEcCCC---ceEec--cCCCEEE------ecCCHhHcCCCCCCEEEECC
Confidence 689999999999999 88888 455678889998877 55321 2599999 99899887 4578899999
Q ss_pred ChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEEcCCEEEcC
Q 026831 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSR 198 (232)
Q Consensus 119 g~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg~~iTa~ 198 (232)
|........+++++++||+++++++++|+++|+|+ ++||++|||+||++|+||...+.+....+.++.+++|||++||+
T Consensus 69 g~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~ 147 (163)
T cd03135 69 GLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAP-AVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSR 147 (163)
T ss_pred CCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhH-HHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcC
Confidence 96235556689999999999999999999999995 78999999999999999999998877777788999999999999
Q ss_pred ChhhHHHHHHHHHHHh
Q 026831 199 GPGTSMEFALAIVEKF 214 (232)
Q Consensus 199 g~~a~~d~~l~lI~~~ 214 (232)
|+.+++|+++++|+++
T Consensus 148 g~~s~~d~al~li~~l 163 (163)
T cd03135 148 GPGTAFEFALKIVEAL 163 (163)
T ss_pred CcccHHHHHHHHHHhC
Confidence 9999999999999974
No 8
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.97 E-value=9.4e-30 Score=211.16 Aligned_cols=183 Identities=30% Similarity=0.390 Sum_probs=152.4
Q ss_pred ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831 39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA 115 (232)
Q Consensus 39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li 115 (232)
.+||.||++|||+++|+. |.+++ ...+..+..++....--.|+.++ .|+++. ++..+++++ +.|.|+
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l-~~ag~~v~~~s~~~~~~~~v~ss---~G~~v~------~d~~l~~~~~~~~D~l~ 71 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLL-VRGGIKVTTASVASDGNLEITCS---RGVKLL------ADAPLVEVADGDFDVIV 71 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHH-HHCCCeEEEEEccCCCCceEEcC---CCCEEe------CCCCHHHCCCCCCCEEE
Confidence 468999999999999999 99999 44577777777543200145544 599999 888888863 467799
Q ss_pred ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEEcC--C
Q 026831 116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDG--N 193 (232)
Q Consensus 116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg--~ 193 (232)
||||..+...+..++.+.+|||+++++|++|++||+|+.++|+.+|+|+|+++|.+....+.+....+.++.++.|+ |
T Consensus 72 ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~ 151 (196)
T PRK11574 72 LPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVN 151 (196)
T ss_pred ECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCcc
Confidence 99996434546678899999999999999999999997545777999999999998888888877777777888886 9
Q ss_pred EEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831 194 LITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC 231 (232)
Q Consensus 194 ~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~ 231 (232)
++||+|+.+++|+++++|++++|++.|++|++.|+++.
T Consensus 152 iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~ 189 (196)
T PRK11574 152 LLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAA 189 (196)
T ss_pred EEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence 99999999999999999999999999999999998763
No 9
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.97 E-value=2.7e-30 Score=229.62 Aligned_cols=177 Identities=19% Similarity=0.271 Sum_probs=151.1
Q ss_pred ccEEEEEecCCccccccc-chhhhc---cCCC---ceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhc
Q 026831 39 LEVILTTVAPGYFRNHLM-PKLLAV---PNIE---KFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARR 111 (232)
Q Consensus 39 ~~~I~iLl~~gf~~~el~-p~~~a~---~~~~---~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~ 111 (232)
+++|+|++||||+++|++ |.+++. ...+ ..+.+++.+++ |+.++ .|+.+. ++..+++.++.
T Consensus 9 ~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~---~v~ss---~g~~i~------~d~~~~~~~~~ 76 (322)
T PRK09393 9 NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG---PLRAA---GGITVV------ADGGLELLDRA 76 (322)
T ss_pred ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC---ceEeC---CCcEEe------CCCCccccCCC
Confidence 368999999999999999 777662 1111 35678888776 77765 499999 99888887778
Q ss_pred cceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----cc-CCC
Q 026831 112 LENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SE-IEN 186 (232)
Q Consensus 112 d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~-~d~ 186 (232)
|.||||||.+ .. ...++++.+||+++.+++++|++||+|+ ++||++|||+|+++|+||...+.|++. .+ .+.
T Consensus 77 D~livpGg~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~ 153 (322)
T PRK09393 77 DTIVIPGWRG-PD-APVPEPLLEALRAAHARGARLCSICSGV-FVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDV 153 (322)
T ss_pred CEEEECCCCc-cc-ccCCHHHHHHHHHHHHcCCEEEEEcHHH-HHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCc
Confidence 8899999853 33 3468999999999999999999999995 789999999999999999999999863 22 345
Q ss_pred cEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831 187 RVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230 (232)
Q Consensus 187 ~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~ 230 (232)
.+++|||++||+|+.+++|+++++|++.+|.++++.+++.|+++
T Consensus 154 ~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~ 197 (322)
T PRK09393 154 LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVP 197 (322)
T ss_pred eEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcC
Confidence 78999999999999999999999999999999999999999874
No 10
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.97 E-value=2e-30 Score=209.57 Aligned_cols=154 Identities=27% Similarity=0.368 Sum_probs=128.4
Q ss_pred EecCCccccccc-chhhhccCC------CceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccceecc
Q 026831 45 TVAPGYFRNHLM-PKLLAVPNI------EKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARL 117 (232)
Q Consensus 45 Ll~~gf~~~el~-p~~~a~~~~------~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~livp 117 (232)
|+||||++++++ +.+++.... ...+++++.+++ |+.++ +|+++. ++..+++.++.|.|+||
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~---~v~~s---~g~~i~------~~~~~~~~~~~D~lvvp 68 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG---PVTSS---SGLRIQ------PDGSLDDAPDFDILVVP 68 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC---EEEBT---TSEEEE------ESEETCCCSCCSEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC---eeeec---CCeEEE------eccChhhcccCCEEEeC
Confidence 789999999999 777763221 356889999887 77775 599999 99999988788999999
Q ss_pred CChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc----c-CCCcEEEcC
Q 026831 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS----E-IENRVVVDG 192 (232)
Q Consensus 118 Gg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~----~-~d~~~v~Dg 192 (232)
||.. ......++.+++||+++++++++|+++|+| +++||++|||+|+++|+||...+.|++.+ + .++.+|.||
T Consensus 69 g~~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg 146 (166)
T PF13278_consen 69 GGPG-FDAAAKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDG 146 (166)
T ss_dssp -STT-HHHHTT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEET
T ss_pred CCCC-chhcccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECC
Confidence 9974 455678899999999999999999999999 58899999999999999999999999863 2 389999999
Q ss_pred CEEEcCChhhHHHHHHHHHH
Q 026831 193 NLITSRGPGTSMEFALAIVE 212 (232)
Q Consensus 193 ~~iTa~g~~a~~d~~l~lI~ 212 (232)
|++||+|+.+++|++++||+
T Consensus 147 ~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 147 NIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp TEEEESSCCHHHHHHHHHHH
T ss_pred CeEEecHHHHHHHHHHHHhC
Confidence 99999999999999999996
No 11
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.96 E-value=2.2e-28 Score=197.38 Aligned_cols=159 Identities=22% Similarity=0.356 Sum_probs=137.6
Q ss_pred EEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccceecc
Q 026831 41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENARL 117 (232)
Q Consensus 41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~livp 117 (232)
+|+||++|||...|+. |..++ ...+..+++++.+++ ++.++ .|+.+. ++..+++++ +.|.|+||
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~~---~v~~~---~g~~i~------~~~~~~~~~~~~~D~vvv~ 67 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRL-REAGHEVDTVSKEAG---TTVGK---HGYSVT------VDATIDEVNPEEYDALVIP 67 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHH-HHCCCEEEEEecCCC---ceecc---CCceee------ccCChhhCCHHHCcEEEEC
Confidence 6899999999999999 88888 455778888887766 66654 499999 888888764 46789999
Q ss_pred CChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCC-CcEEEcCCE
Q 026831 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIE-NRVVVDGNL 194 (232)
Q Consensus 118 Gg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d-~~~v~Dg~~ 194 (232)
||.. ...+..++.+.+||+++++++++++++|+|+ ++||++|||+||++|+||...+.+++. .+.+ +.+|.|||+
T Consensus 68 Gg~~-~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~i 145 (166)
T TIGR01382 68 GGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNL 145 (166)
T ss_pred CCCC-HHHhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCE
Confidence 9963 5545678999999999999999999999995 789999999999999999999999874 4566 799999999
Q ss_pred EEcCChhhHHHHHHHHHHHh
Q 026831 195 ITSRGPGTSMEFALAIVEKF 214 (232)
Q Consensus 195 iTa~g~~a~~d~~l~lI~~~ 214 (232)
|||+|+.++.+++.++++++
T Consensus 146 iT~~~~~~~~~fa~~~~~~l 165 (166)
T TIGR01382 146 VTSRVPDDLPAFNREFLKLL 165 (166)
T ss_pred EEeCCcccHHHHHHHHHHHh
Confidence 99999999999999999975
No 12
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.96 E-value=2.5e-28 Score=196.89 Aligned_cols=157 Identities=24% Similarity=0.358 Sum_probs=136.6
Q ss_pred EEEEEecCCccccccc-chhhhccCCCceEEEEecc-ccccCCccccccccce-EEeeccCCccchhHHHhh--hcccee
Q 026831 41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQ-RRIFQPEEEEEEEEEV-RVIRKSEDNMSREFEKAA--RRLENA 115 (232)
Q Consensus 41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~-~~~~~pv~s~~~~~Gl-~v~~~~~~~~~~~~~~~~--~~d~li 115 (232)
||+||++|||++.|+. +...+ ...+.++.+++.+ .+ ++.++ .|+ .+. ++..+++.+ +.|.|+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l-~~a~~~v~~vs~~~~~---~v~~~---~g~~~i~------~d~~~~~~~~~~~D~lv 67 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRL-REAGAEVVVAGPEAGG---EIQGK---HGYDTVT------VDLTIADVDADDYDALV 67 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHH-HHCCCEEEEEccCCCc---ccccC---cCceeec------CCCChHHCCHHHCCEEE
Confidence 6899999999999999 77776 5557888999988 55 77665 488 888 888888763 468899
Q ss_pred ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEEcCC
Q 026831 116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVVDGN 193 (232)
Q Consensus 116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~Dg~ 193 (232)
||||. +...+..++.+++||+++++++++|+++|+|+ ++||++|+|+|+++|+||...+.+++. .+.++.+++|||
T Consensus 68 vpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~ 145 (165)
T cd03134 68 IPGGT-NPDKLRRDPDAVAFVRAFAEAGKPVAAICHGP-WVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGN 145 (165)
T ss_pred ECCCC-ChhhhccCHHHHHHHHHHHHcCCeEEEEchHH-HHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECC
Confidence 99997 45556678999999999999999999999995 789999999999999999999999873 466888999999
Q ss_pred EEEcCChhhHHHHHHHHHH
Q 026831 194 LITSRGPGTSMEFALAIVE 212 (232)
Q Consensus 194 ~iTa~g~~a~~d~~l~lI~ 212 (232)
+|||+|+.++++|+..+|+
T Consensus 146 iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 146 LITSRNPDDLPAFNRAILK 164 (165)
T ss_pred EEEecCcchHHHHHHHHHh
Confidence 9999999999999999986
No 13
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.95 E-value=1e-27 Score=194.88 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=131.6
Q ss_pred EEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh--hhccceeccC
Q 026831 42 ILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA--ARRLENARLG 118 (232)
Q Consensus 42 I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~--~~~d~livpG 118 (232)
|+++++|||++.|++ |..++....+..+.+++.+++ ++.++ +|+.+. ++..+++. .+.|.|+|||
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~---~v~ss---~g~~i~------~~~~~~~~~~~~~D~l~I~G 68 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE---PVTSI---GGLRVV------PDYSLDDLPPEDYDLLILPG 68 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC---eeEec---CCeEEc------cccchhHCCHhHccEEEEcC
Confidence 689999999999999 888884433566788888876 77665 599999 99888886 4578899999
Q ss_pred ChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCcc-chhhhcc-----CccCCCcEEEcC
Q 026831 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPA-MCNKLSD-----QSEIENRVVVDG 192 (232)
Q Consensus 119 g~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~-~~~~~~~-----~~~~d~~~v~Dg 192 (232)
|.. .. ...++++.+|||++++++++|+++|+|+ ++||++|||+||++|+||. ..+.+++ ..+.++.+++||
T Consensus 69 g~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg 145 (170)
T cd03140 69 GDS-WD-NPEAPDLAGLVRQALKQGKPVAAICGAT-LALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDG 145 (170)
T ss_pred Ccc-cc-cCCcHHHHHHHHHHHHcCCEEEEEChHH-HHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcC
Confidence 963 33 3478999999999999999999999996 7899999999999999986 4566654 246789999999
Q ss_pred CEEEcCChhhHHHHHHHHHHHh
Q 026831 193 NLITSRGPGTSMEFALAIVEKF 214 (232)
Q Consensus 193 ~~iTa~g~~a~~d~~l~lI~~~ 214 (232)
|+|||+|. +++|+++++|+++
T Consensus 146 ~iiT~~g~-a~~d~al~~i~~l 166 (170)
T cd03140 146 NLITANGT-APVEFAAEILRAL 166 (170)
T ss_pred CEEECCCc-CHHHHHHHHHHHc
Confidence 99999875 5899999999976
No 14
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.95 E-value=4.9e-27 Score=192.48 Aligned_cols=165 Identities=22% Similarity=0.334 Sum_probs=136.1
Q ss_pred EEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCcccc----------ccccceEEeeccCCccchhHHHhh
Q 026831 41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE----------EEEEEVRVIRKSEDNMSREFEKAA 109 (232)
Q Consensus 41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~----------~~~~Gl~v~~~~~~~~~~~~~~~~ 109 (232)
||+|+++|||...|+. |..++ ...+..+.+++.+++...++.+. ....|+.+. ++..+++.+
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l-~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~------~~~~~~~~~ 73 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQAL-QEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFA------VTADFDEVD 73 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHH-HHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEe------ccCCcccCC
Confidence 6899999999999999 99988 55688888998877522222221 012478888 888888754
Q ss_pred --hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCC
Q 026831 110 --RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIE 185 (232)
Q Consensus 110 --~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d 185 (232)
..|.|+||||. +......++.+.+||+++++++++|++||+|+ ++|+++|||+||++|+||...+.+++. .+.+
T Consensus 74 ~~~~D~liv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~ 151 (180)
T cd03169 74 PDDYDALVIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVD 151 (180)
T ss_pred HhHCCEEEEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEee
Confidence 45789999996 34445568999999999999999999999995 789999999999999999999988874 3567
Q ss_pred CcEEEcCCEEEcCChhhHHHHHHHHHHHh
Q 026831 186 NRVVVDGNLITSRGPGTSMEFALAIVEKF 214 (232)
Q Consensus 186 ~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~ 214 (232)
+.++.|||+|||+|+.+..+|+.++++.+
T Consensus 152 ~~~v~D~~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 152 DGVVVDGNLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred ccEEEECCEEEecCCchHHHHHHHHHHhC
Confidence 88999999999999999999999999864
No 15
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.92 E-value=1.4e-24 Score=180.25 Aligned_cols=181 Identities=35% Similarity=0.483 Sum_probs=156.7
Q ss_pred ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh-h-hcccee
Q 026831 39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA-A-RRLENA 115 (232)
Q Consensus 39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~-~-~~d~li 115 (232)
...+.+|.-+|.+++|+. |.+++ +..|..++.++..++ .+++.++ |..+. ++..+.+. . ..|+++
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVL-rr~Gi~Vt~ag~~~~--~~vkcs~---~v~~~------~d~~l~D~~~~~yDvii 72 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVL-RRGGIDVTVAGPNKK--EGVKCSR---GVHIL------PDNALFDVVDSKYDVII 72 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHH-HhcCceEEEecCCCC--ccccccc---ceEec------ccccchhhccccccEEE
Confidence 456777778899999999 98888 677888899997766 3888775 88887 77655543 2 467799
Q ss_pred ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhcc--CccCCCcEEEcCC
Q 026831 116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSD--QSEIENRVVVDGN 193 (232)
Q Consensus 116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~--~~~~d~~~v~Dg~ 193 (232)
||||.++...+.+++.+.+.+++|.+.|+.|++||+|+.++|+.-|++.|+++|+|+...+.+.+ ..|.+.+++.|||
T Consensus 73 lPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~ 152 (247)
T KOG2764|consen 73 LPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGN 152 (247)
T ss_pred ecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCc
Confidence 99997677888999999999999999999999999998677778888889999999999999998 4578999999999
Q ss_pred EEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831 194 LITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC 231 (232)
Q Consensus 194 ~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~ 231 (232)
++||.|+...+++++.|+|++.|++.+.++.+.+++.+
T Consensus 153 liTSrGpgT~~eFal~lvEqL~GKeka~~v~~~l~l~~ 190 (247)
T KOG2764|consen 153 LITSRGPGTAFEFALKLVEQLGGKEKANEVKKPLSLLF 190 (247)
T ss_pred EEeccCCCchHHHHHHHHHHhcCchhhhhhhccceeec
Confidence 99999999999999999999999999999999887654
No 16
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.87 E-value=9.2e-22 Score=162.07 Aligned_cols=169 Identities=26% Similarity=0.412 Sum_probs=136.8
Q ss_pred ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831 39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA 115 (232)
Q Consensus 39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li 115 (232)
.++|+++++|||+..|+. |..++ ...+..+..++...+. .+..+. ..+..+. ++..+++++ +.|.|+
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l-~~ag~~v~~~~~~~~~-~~~~~~--~g~~~~~------~~~~~~~~~~~~ydal~ 71 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVL-RRAGFEVDVASPEGKG-KSVTSK--RGGLVVA------DDKAFDDADAADYDALV 71 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHH-HHCCCeEEEEecCCCc-ceeecc--cCcceEe------cccccccCCHhHCCEEE
Confidence 468999999999999999 99999 6667777777766531 122222 1245555 556676664 677899
Q ss_pred ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC-CCCCCeeecCccchhhhcc------CccCCC--
Q 026831 116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAFPAMCNKLSD------QSEIEN-- 186 (232)
Q Consensus 116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG-LL~g~~~T~h~~~~~~~~~------~~~~d~-- 186 (232)
+|||..+......++.+++|+|++++++++|++||+|+ .+|+.+| +++||++|+++...+...+ ..+.|.
T Consensus 72 ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~-~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~ 150 (188)
T COG0693 72 IPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGP-AVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPL 150 (188)
T ss_pred ECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhH-HHHhccccccCCceEeecCchHHHHHhHHHhcCceEecccc
Confidence 99993245556667999999999999999999999997 6799999 9999999999998888777 356666
Q ss_pred ---cEEEcCC-EEEcCChhhHHHHHHHHHHHhcCHH
Q 026831 187 ---RVVVDGN-LITSRGPGTSMEFALAIVEKFFGRN 218 (232)
Q Consensus 187 ---~~v~Dg~-~iTa~g~~a~~d~~l~lI~~~~G~~ 218 (232)
.++.||+ ++|+.++.+..+++..+++++.+..
T Consensus 151 ~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 151 WTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred CcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence 9999999 9999999999999999999998754
No 17
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.87 E-value=2.5e-22 Score=170.08 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=122.6
Q ss_pred cCCccccccc-chhhhccCCCceEEEEeccccccCCccccc--------------cccceEEeeccCCccchhHHHhh--
Q 026831 47 APGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEE--------------EEEEVRVIRKSEDNMSREFEKAA-- 109 (232)
Q Consensus 47 ~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~--------------~~~Gl~v~~~~~~~~~~~~~~~~-- 109 (232)
-+||+..|+. |..++ ...|..+.+++.++........+. ...+..+. ++..+++++
T Consensus 17 ~~G~~~~E~~~p~~~l-~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 89 (221)
T cd03141 17 PTGLWLEELAHPYDVF-TEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLA------NTKKLSDVDPS 89 (221)
T ss_pred cCccCHHHHHHHHHHH-HHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHH------ccCChhHCCHh
Confidence 3799999999 99998 667888888887765211110100 01233344 666777764
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC------CCCCCeeecCccchhhh-----
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLKGKKATAFPAMCNKL----- 178 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG------LL~g~~~T~h~~~~~~~----- 178 (232)
+.|.|+||||.+....+..++++++||+++.+++++|++||+|+ ++|+++| ||+||++|+||...+.+
T Consensus 90 ~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~ 168 (221)
T cd03141 90 DYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKK 168 (221)
T ss_pred HceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccC
Confidence 46779999997434456789999999999999999999999996 7799999 79999999999876553
Q ss_pred ----------ccC--ccC-----CCcEEEcCCEEEcCChhhHHHHHHHHHHHh
Q 026831 179 ----------SDQ--SEI-----ENRVVVDGNLITSRGPGTSMEFALAIVEKF 214 (232)
Q Consensus 179 ----------~~~--~~~-----d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~ 214 (232)
++. .+. +..+|+|||++|++|+.++.++++++|+.+
T Consensus 169 ~~~~~~~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 169 VVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred cCCcCHHHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 332 222 366999999999999999999999999864
No 18
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.85 E-value=6.4e-21 Score=151.47 Aligned_cols=134 Identities=36% Similarity=0.604 Sum_probs=107.8
Q ss_pred EEEEeccccccCCccccccccc---eEEeeccCCccchhHHHhhh--ccceeccCChhhHHhhhcC-HHHHHHHHHHHhC
Q 026831 69 AHLIREQRRIFQPEEEEEEEEE---VRVIRKSEDNMSREFEKAAR--RLENARLGGLGGAQAFAKS-EKLVNMLKKQKES 142 (232)
Q Consensus 69 ~~~v~~~~~~~~pv~s~~~~~G---l~v~~~~~~~~~~~~~~~~~--~d~livpGg~~~~~~~~~~-~~l~~~Lr~~~~~ 142 (232)
+.+++...+ .++.++ .| ..+. ++..+++++. .|.||+|||.++...+..+ +.++++|++++++
T Consensus 2 V~~vs~~~~--~~v~~~---~g~~~~~v~------~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~ 70 (147)
T PF01965_consen 2 VDVVSPGDG--KEVTGS---HGSFGIKVT------PDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEA 70 (147)
T ss_dssp EEEEESSSS--SEEEBT---TSHHHHEEE------SSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred EEEEECCCC--CeEEcC---CCcCCEEEE------CCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHc
Confidence 445555444 134443 36 9999 9999998754 5679999998656667645 9999999999999
Q ss_pred CCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccC--CCcEEEcC-CEEEcCChhhHHHHHHHHHHHh
Q 026831 143 NRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEI--ENRVVVDG-NLITSRGPGTSMEFALAIVEKF 214 (232)
Q Consensus 143 g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~--d~~~v~Dg-~~iTa~g~~a~~d~~l~lI~~~ 214 (232)
+++|++||+|+ .+|+++|+|+|+++|+|+...+.++.. .+. +..+++|| |+||+.|+.+++++++.+|+.+
T Consensus 71 ~k~iaaIC~g~-~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 71 GKPIAAICHGP-AVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp T-EEEEETTCH-HHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred CCeEEecCCCc-chhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 99999999997 679999999999999999988866653 344 48889999 9999999999999999999986
No 19
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.83 E-value=1.6e-20 Score=159.99 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=119.3
Q ss_pred CCccccccc-chhhhccCCCceEEEEeccccccCCccc-c-----------------ccccceEEeeccCCccchhHHHh
Q 026831 48 PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEE-E-----------------EEEEEVRVIRKSEDNMSREFEKA 108 (232)
Q Consensus 48 ~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s-~-----------------~~~~Gl~v~~~~~~~~~~~~~~~ 108 (232)
.||++.|+. |++++ ...|..+.+++.++.. +... + ....+.++. .+..++++
T Consensus 20 tG~~~~E~~~p~~~l-~~aG~~VdiaS~~g~~--~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~l~dv 90 (231)
T cd03147 20 TGVFFSEALHPFNVF-REAGFEVDFVSETGTF--GFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLK------NIKKADEV 90 (231)
T ss_pred cccCHHHHHHHHHHH-HHCCCEEEEECCCCCC--CCCccccccccCCHHHHHHHhcchHHHHHHHh------ccCChhHC
Confidence 799999999 99998 6778888888876541 1100 0 000122233 44556664
Q ss_pred --hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-------CCCCCCeeecCccch----
Q 026831 109 --ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLKGKKATAFPAMC---- 175 (232)
Q Consensus 109 --~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-------GLL~g~~~T~h~~~~---- 175 (232)
.+.|.||||||++++.++..|+.++++|++++++|++|++||+|++ +|+.+ ||++||++|+|+..+
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~ 169 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIM 169 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhh
Confidence 2467799999987677789999999999999999999999999985 57776 999999999998754
Q ss_pred ---------------hhhcc--CccC------CCcEEEcCCEEEcCChhhHHHHHHHHHHHh
Q 026831 176 ---------------NKLSD--QSEI------ENRVVVDGNLITSRGPGTSMEFALAIVEKF 214 (232)
Q Consensus 176 ---------------~~~~~--~~~~------d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~ 214 (232)
+.+++ ..+. +..+|+|||+||+.++.++.++++.+|+++
T Consensus 170 ~~~~~~~~~~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 170 GVMEILKKRNLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred hhhhhhcccCCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 22332 2222 456899999999999999999999999875
No 20
>PRK04155 chaperone protein HchA; Provisional
Probab=99.82 E-value=8.7e-20 Score=159.77 Aligned_cols=170 Identities=20% Similarity=0.233 Sum_probs=125.1
Q ss_pred CCCccEEEEEec--------------CCccccccc-chhhhccCCCceEEEEeccccccCCccccccc------------
Q 026831 36 YRRLEVILTTVA--------------PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEE------------ 88 (232)
Q Consensus 36 ~~~~~~I~iLl~--------------~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~------------ 88 (232)
|...++|.+++. .||++.|+. |.+.+ ...|..+.+++..++ ++....++
T Consensus 46 ~~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L-~~AG~eVdiAS~~G~---~~~~d~~s~~~~d~~v~~~~ 121 (287)
T PRK04155 46 YRGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHL-HKAGFEFDVATLSGN---PVKFEYWAMPHEDEAVMGFY 121 (287)
T ss_pred CCCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHH-HHCCCEEEEEecCCC---ccccccccccccchhHHHHH
Confidence 444458888864 688888998 98888 677888888888664 22111000
Q ss_pred --cceEEeeccCCccchhHHHh--------hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 89 --EEVRVIRKSEDNMSREFEKA--------ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 89 --~Gl~v~~~~~~~~~~~~~~~--------~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
.+-++. .+..++++ .+.|.||||||++.+.++..++.+.++|+.+++++++|++||+|++ +|.
T Consensus 122 ~~~~~~l~------~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll 194 (287)
T PRK04155 122 EKYKSKFK------QPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALL 194 (287)
T ss_pred HHhhhhcc------CceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHH
Confidence 011111 22223332 1356699999987778889999999999999999999999999985 477
Q ss_pred hcC------CCCCCeeecCccc-------------------hhhhccC--ccCC----CcEEEcCCEEEcCChhhHHHHH
Q 026831 159 PHG------LLKGKKATAFPAM-------------------CNKLSDQ--SEIE----NRVVVDGNLITSRGPGTSMEFA 207 (232)
Q Consensus 159 ~aG------LL~g~~~T~h~~~-------------------~~~~~~~--~~~d----~~~v~Dg~~iTa~g~~a~~d~~ 207 (232)
.+| |++||++|+++.. ++.+++. .+.+ ..+|+|||+||+.|+.++.+++
T Consensus 195 ~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa 274 (287)
T PRK04155 195 AAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALG 274 (287)
T ss_pred HcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHH
Confidence 788 9999999998765 3344432 2333 6899999999999999999999
Q ss_pred HHHHHHhcC
Q 026831 208 LAIVEKFFG 216 (232)
Q Consensus 208 l~lI~~~~G 216 (232)
+.+++.+.-
T Consensus 275 ~~~~~~Ll~ 283 (287)
T PRK04155 275 KLAAQELLA 283 (287)
T ss_pred HHHHHHHHH
Confidence 999998753
No 21
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.80 E-value=3.3e-19 Score=151.97 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=124.0
Q ss_pred EEEecCCccccccc-chhhhccCCCceEEEEeccccccCCcccc-c-----------cccceEEeeccCCccchhHHHh-
Q 026831 43 LTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE-E-----------EEEEVRVIRKSEDNMSREFEKA- 108 (232)
Q Consensus 43 ~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~-~-----------~~~Gl~v~~~~~~~~~~~~~~~- 108 (232)
+-.+..||++.|+. |++++ ...|..+.+++.+++.. +.... . ...+..+. .+..++++
T Consensus 16 ~~~~~tG~~~~El~~p~~~l-~~aG~~V~~aS~~g~~~-~~d~~s~~~~~~~~~~~~~~~~~~l~------~~~~l~~v~ 87 (232)
T cd03148 16 GKLFSTGNHPVEMLLPLYHL-HAAGFDFDVATLSGLPV-KFEYWAMPHEDEAVMPFFEKHKSKLR------NPKKLADVV 87 (232)
T ss_pred CCCcCCCCcHHHHHHHHHHH-HHCCCEEEEEeCCCCcC-ccCccccccccHHHHHHHHHHHHHhc------CCCCHHHhh
Confidence 34457999999999 99999 67788899888866511 11000 0 00122222 45556655
Q ss_pred -------hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCC------CCCCeeecCccch
Q 026831 109 -------ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGL------LKGKKATAFPAMC 175 (232)
Q Consensus 109 -------~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGL------L~g~~~T~h~~~~ 175 (232)
.+.|.||+|||+++++++..|+.+.+++++++++|++|++||+||+ +|..+++ ++||++|+++..+
T Consensus 88 ~~~~~~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~e 166 (232)
T cd03148 88 ASLNADDSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSL 166 (232)
T ss_pred hhccCChhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHH
Confidence 2467799999987788899999999999999999999999999985 4777888 9999999999877
Q ss_pred hhhc--------------------cC--cc----CCCcEEEcCCEEEcCChhhHHHHHHHHHHHhc
Q 026831 176 NKLS--------------------DQ--SE----IENRVVVDGNLITSRGPGTSMEFALAIVEKFF 215 (232)
Q Consensus 176 ~~~~--------------------~~--~~----~d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~ 215 (232)
|... +. .+ .+..+|+||++||+.++.|+..++..+|+.+.
T Consensus 167 E~~~~~~~~~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~ 232 (232)
T cd03148 167 DEGANIEIGYMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML 232 (232)
T ss_pred HHhhhhccccccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence 6432 10 11 24578999999999999999999999998763
No 22
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.72 E-value=2.5e-17 Score=129.72 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=92.8
Q ss_pred cEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccceec
Q 026831 40 EVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENAR 116 (232)
Q Consensus 40 ~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~liv 116 (232)
++|+||++|||++.|+. |.+.+ ...+.++.+++.+++ ++.++ .|+.+. ++.+|++.+ +.|.|+|
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~-~~a~~~v~vvs~~~~---~v~s~---~g~~i~------~~~~l~~~~~~~~D~liV 68 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAAL-KAAGANVKVVAPTLG---GVVDS---DGKTLE------VDQTYAGAPSVLFDAVVV 68 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHH-HHCCCEEEEEecCcC---ceecC---CCcEEe------cceeecCCChhhcCEEEE
Confidence 68999999999999999 88888 455788899999887 77765 499998 888887754 3678999
Q ss_pred cCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCC
Q 026831 117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 163 (232)
Q Consensus 117 pGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL 163 (232)
|||......+..++++.+||+++++++++|+++|+|+ ++||++|||
T Consensus 69 pGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~-~~La~aGll 114 (142)
T cd03132 69 PGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS-DLLEAAGIP 114 (142)
T ss_pred CCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH-HHHHHcCCC
Confidence 9996433334678999999999999999999999995 789999997
No 23
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.72 E-value=4.8e-17 Score=137.36 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=109.2
Q ss_pred cEEEEEec-----CCccccccc-chhhhccCCCceEEEEeccccccCCcccc-----ccccceEEeec-cCCccchhHHH
Q 026831 40 EVILTTVA-----PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE-----EEEEEVRVIRK-SEDNMSREFEK 107 (232)
Q Consensus 40 ~~I~iLl~-----~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~-----~~~~Gl~v~~~-~~~~~~~~~~~ 107 (232)
++|+|++. |||+..|+. |.+.+ ...|..+.+++.+++........ ....++.+... ........+++
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L-~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLAL-DRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHH-HHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 58999997 999999999 99988 67788888888766421110000 00112222200 00001145666
Q ss_pred h--hhccceeccCChhhHHh----------hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecC--cc
Q 026831 108 A--ARRLENARLGGLGGAQA----------FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF--PA 173 (232)
Q Consensus 108 ~--~~~d~livpGg~~~~~~----------~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h--~~ 173 (232)
+ .+.|.||+|||++.... +..++.+++++++++++|++|++||+|++ +|+.+.. +||++|++ +.
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~ 158 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDED 158 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChh
Confidence 5 24677999999754322 24589999999999999999999999985 5777632 89999999 88
Q ss_pred chhhhccC--ccCCC---cEEEc--CCEEEcCC
Q 026831 174 MCNKLSDQ--SEIEN---RVVVD--GNLITSRG 199 (232)
Q Consensus 174 ~~~~~~~~--~~~d~---~~v~D--g~~iTa~g 199 (232)
..+.++++ .+.+. .+|+| ||++||..
T Consensus 159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~ 191 (217)
T PRK11780 159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPA 191 (217)
T ss_pred hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCc
Confidence 88888874 45553 67777 78999985
No 24
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.65 E-value=5.5e-16 Score=130.41 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=102.9
Q ss_pred ecCCccccccc-chhhhccCCCceEEEEeccccccCCcc-----ccccccceEEeecc-CCccchhHHHh--hhccceec
Q 026831 46 VAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEE-----EEEEEEEVRVIRKS-EDNMSREFEKA--ARRLENAR 116 (232)
Q Consensus 46 l~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~-----s~~~~~Gl~v~~~~-~~~~~~~~~~~--~~~d~liv 116 (232)
.+|||++.|+. |..++ ...|..+.+++.+++...... ......++.+.... .......++++ .+.|.|||
T Consensus 10 ~~dg~E~~El~~p~~~L-~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalvi 88 (213)
T cd03133 10 VYDGSEIHEAVLTLLAL-DRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIF 88 (213)
T ss_pred CCCCccHHHHHHHHHHH-HHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEE
Confidence 48999999999 99988 677888888887654211000 00011244333000 00011456664 24677999
Q ss_pred cCChhhHHhh----------hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCc--cchhhhccC--c
Q 026831 117 LGGLGGAQAF----------AKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP--AMCNKLSDQ--S 182 (232)
Q Consensus 117 pGg~~~~~~~----------~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~--~~~~~~~~~--~ 182 (232)
|||.++...+ ..++.+++++++++++|++|++||+|++ +|++++. +||++|+|+ ..++.+++. .
T Consensus 89 PGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~ 166 (213)
T cd03133 89 PGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAE 166 (213)
T ss_pred CCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCE
Confidence 9997543222 2488999999999999999999999985 5888765 999999999 777788763 3
Q ss_pred cCC---CcEEEc--CCEEEcCCh
Q 026831 183 EIE---NRVVVD--GNLITSRGP 200 (232)
Q Consensus 183 ~~d---~~~v~D--g~~iTa~g~ 200 (232)
+.+ ..+++| ||+|||...
T Consensus 167 ~~d~~~~~vvvd~dg~lITs~~~ 189 (213)
T cd03133 167 HVNCPVEEIVVDEKNKVVTTPAY 189 (213)
T ss_pred EEeCCCCeEEEECCCCEEeCccc
Confidence 443 355555 799999864
No 25
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.34 E-value=2.9e-12 Score=124.13 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=96.4
Q ss_pred CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhh--ccce
Q 026831 38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAAR--RLEN 114 (232)
Q Consensus 38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~--~d~l 114 (232)
+.++|+||++|||...++. +..++ ...|..+.+|+.+.+ ++.+. .|..+. ++.+|++.+. .|.|
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL-~~AGa~V~VVSp~~G---~V~~s---~G~~I~------aD~t~~~~~Sv~FDAV 662 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKAL-KAKGVHAKLLYPRMG---EVTAD---DGTVLP------IAATFAGAPSLTFDAV 662 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHH-HHCCCEEEEEECCCC---eEECC---CCCEEe------cceeeccCCccCCCEE
Confidence 4689999999999999998 77777 556788899998887 77665 499999 9989988754 6789
Q ss_pred eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCC
Q 026831 115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 164 (232)
Q Consensus 115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~ 164 (232)
+||||..+...+..+++++.||+++++++|+|+++|+|+ .+|+++||.+
T Consensus 663 vVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~-~LLaaAGL~~ 711 (752)
T PRK11249 663 IVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDAR-KLKAALKLPD 711 (752)
T ss_pred EECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccH-HHHHhcCCCC
Confidence 999996446667789999999999999999999999995 7899999955
No 26
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.82 E-value=1.1e-08 Score=86.69 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=45.4
Q ss_pred hccceeccCChhhHH-----hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCe
Q 026831 110 RRLENARLGGLGGAQ-----AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 167 (232)
Q Consensus 110 ~~d~livpGg~~~~~-----~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~ 167 (232)
+.|.|+||||....+ ....++.+.+||+++.++++++++||+|+ ++|+++|||+|+-
T Consensus 41 ~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~l 102 (219)
T PRK03619 41 GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGAL 102 (219)
T ss_pred CCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCeE
Confidence 456699999853211 12345789999999999999999999995 7899999999964
No 27
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.51 E-value=1.6e-07 Score=80.50 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=57.1
Q ss_pred hccceeccCChhhHHhhh-----cCHH-HHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhcc-Cc
Q 026831 110 RRLENARLGGLGGAQAFA-----KSEK-LVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSD-QS 182 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~-----~~~~-l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~-~~ 182 (232)
+.|.|+||||....+.+. .... +.++|+++.++++++.+||.|. .+|+++|+|.|+. +.++........ ..
T Consensus 43 ~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~-QlL~~~gll~g~~-~~~~~~~~~~~~~~~ 120 (238)
T cd01740 43 DYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGF-QILVELGLLPGAL-IRNKGLKFICRWQNR 120 (238)
T ss_pred hCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHH-HHHHHcCCCcccc-ccCCCCceeccccCc
Confidence 356699999963222111 1122 8899999999999999999996 6799999999977 555443322221 12
Q ss_pred cCCCcEEEcCCEEEcC
Q 026831 183 EIENRVVVDGNLITSR 198 (232)
Q Consensus 183 ~~d~~~v~Dg~~iTa~ 198 (232)
+.+..++.+++++|+.
T Consensus 121 ~v~~~v~~~~si~t~~ 136 (238)
T cd01740 121 FVTLRVENNDSPFTKG 136 (238)
T ss_pred eEEEEEcCCCCceecC
Confidence 3344445566777764
No 28
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.40 E-value=9.3e-07 Score=75.21 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=43.9
Q ss_pred hccceeccCChhhHH-----hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCC
Q 026831 110 RRLENARLGGLGGAQ-----AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 166 (232)
Q Consensus 110 ~~d~livpGg~~~~~-----~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~ 166 (232)
+.|.|+||||....+ ....+..+.++|+++.+.+++|.+||.|. .+|+++|+|+|.
T Consensus 40 ~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~-QlLa~~GlL~G~ 100 (227)
T TIGR01737 40 DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGF-QILVEAGLLPGA 100 (227)
T ss_pred CCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCc
Confidence 456799999863111 12235668899999999999999999995 789999999984
No 29
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.36 E-value=1.1e-06 Score=76.38 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=61.7
Q ss_pred cEEEEEecCCcc-cccccchhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccceeccC
Q 026831 40 EVILTTVAPGYF-RNHLMPKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLG 118 (232)
Q Consensus 40 ~~I~iLl~~gf~-~~el~p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~livpG 118 (232)
++|+||.+||+. +.|.. ..+ ...|..+.++..... . . .... ..+.|.|+|||
T Consensus 4 ~kvaVl~~pG~n~d~e~~--~Al-~~aG~~v~~v~~~~~------~---------~------~~~~---l~~~DgLvipG 56 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETV--KAF-RRLGVEPEYVHINDL------A---------A------ERKS---VSDYDCLVIPG 56 (261)
T ss_pred CEEEEEeCCCCCCHHHHH--HHH-HHCCCcEEEEeeccc------c---------c------cccc---hhhCCEEEECC
Confidence 589999999996 55554 222 233544444432110 0 0 0011 22467799999
Q ss_pred ChhhHHhhhc--------CHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCC
Q 026831 119 GLGGAQAFAK--------SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 165 (232)
Q Consensus 119 g~~~~~~~~~--------~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g 165 (232)
|....+.+.. .+.+.+.|+++.++++++.+||.|. .+|+++|||.|
T Consensus 57 Gfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~-QlLa~~GlLpg 110 (261)
T PRK01175 57 GFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGF-QVLVELGLLPG 110 (261)
T ss_pred CCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHH-HHHHHCCCCCC
Confidence 9532111111 1234588899999999999999995 67999999988
No 30
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.90 E-value=2.5e-05 Score=65.82 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred ccceeccCChhhHHhhh------cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCC
Q 026831 111 RLENARLGGLGGAQAFA------KSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG 165 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~------~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g 165 (232)
.|.|++|||+. .-++. .-+.+++-++++.++|+++.+||+| ..+|.++|||.|
T Consensus 44 ~d~vv~pGGFS-yGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNG-fQiL~e~gLlPG 102 (231)
T COG0047 44 FDGVVLPGGFS-YGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNG-FQILSEAGLLPG 102 (231)
T ss_pred ccEEEEcCCCC-cccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcch-hHHHHHcCcCCc
Confidence 45589999973 22221 2378888899999999999999999 577999999999
No 31
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.90 E-value=3e-05 Score=55.58 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=59.3
Q ss_pred EEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccceeccCCh
Q 026831 42 ILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLGGL 120 (232)
Q Consensus 42 I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~livpGg~ 120 (232)
|++++++++...++. +...+ ...+..+..++.... +. . . .+...+.|.+++|||.
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~---~~-----------~------~---~~~~~~~d~lii~g~~ 56 (115)
T cd01653 1 VAVLLFPGFEELELASPLDAL-REAGAEVDVVSPDGG---PV-----------E------S---DVDLDDYDGLILPGGP 56 (115)
T ss_pred CEEEecCCCchhhhHHHHHHH-HHCCCeEEEEcCCCC---ce-----------e------c---cCChhccCEEEECCCC
Confidence 578889999887666 44444 333444555544332 11 1 0 1122345679999986
Q ss_pred hhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhh
Q 026831 121 GGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVL 157 (232)
Q Consensus 121 ~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lL 157 (232)
........++..+++++++..++++++++|.|+ ++|
T Consensus 57 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~-~~l 92 (115)
T cd01653 57 GTPDDLARDEALLALLREAAAAGKPILGICLGA-QLL 92 (115)
T ss_pred CchhhhccCHHHHHHHHHHHHcCCEEEEECchh-HhH
Confidence 433222247999999999999999999999995 655
No 32
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.67 E-value=4.6e-05 Score=62.53 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=41.2
Q ss_pred hhhccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh----cCCCCC
Q 026831 108 AARRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP----HGLLKG 165 (232)
Q Consensus 108 ~~~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~----aGLL~g 165 (232)
....|.|++|||.. .. .+.++..+.+.|+++.+ ++++.+||.|+ .+|++ .|+++|
T Consensus 37 l~~~D~LILPGG~~-t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~-qlL~~~s~~Lg~idg 97 (179)
T PRK13526 37 FDSIDRLVIPGGES-TTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGS-IILSKGEGYLNLLDL 97 (179)
T ss_pred HhCCCEEEECCChH-HHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHH-HHHHccCCCCCCccE
Confidence 34567799999953 33 45566679999999885 78999999997 66887 355554
No 33
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=97.56 E-value=8.8e-05 Score=61.16 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=40.0
Q ss_pred hhhccceeccCChhhH-HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 108 AARRLENARLGGLGGA-QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 108 ~~~~d~livpGg~~~~-~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.++.|.|+||||.... ..+..+..+.++||++.++++++.+||.|. .+|++.
T Consensus 34 l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~-qlL~~~ 86 (184)
T TIGR03800 34 LDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL-IMLAKE 86 (184)
T ss_pred hccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH-HHHHhh
Confidence 3456779999996422 123345678899999999999999999995 679977
No 34
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.56 E-value=8.9e-05 Score=61.73 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=39.6
Q ss_pred hhccceeccCChhh--HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 109 ARRLENARLGGLGG--AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 109 ~~~d~livpGg~~~--~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
++.|.|++|||... ...+.++..+.+.|+++.++|++|.+||.|. .+|++
T Consensus 39 ~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~-qlL~~ 90 (198)
T cd03130 39 PDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGL-MYLGE 90 (198)
T ss_pred CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccH-HHHHH
Confidence 34577999999643 2345566789999999999999999999996 56874
No 35
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.51 E-value=0.00022 Score=59.32 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=39.1
Q ss_pred hhhccceeccCChhhH-HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 108 AARRLENARLGGLGGA-QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 108 ~~~~d~livpGg~~~~-~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+++.|.|++|||.... .....+..+.++|+++.+.++++.+||.|. .+|+++
T Consensus 41 l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~-Qll~~~ 93 (200)
T PRK13527 41 LPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL-ILLAKE 93 (200)
T ss_pred hccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH-HHHHhh
Confidence 3356779999996422 122344568999999999999999999995 678876
No 36
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.46 E-value=0.00033 Score=47.82 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=34.3
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP 153 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~ 153 (232)
..|.+++|||.........+....++++++..++++++++|.|+
T Consensus 46 ~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 46 DYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred cCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence 35669999986422222246899999999999999999999995
No 37
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.38 E-value=0.0018 Score=52.02 Aligned_cols=100 Identities=22% Similarity=0.327 Sum_probs=62.7
Q ss_pred hccceeccCChhhHHhhh----------cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-CCCCCCeeecC--ccchh
Q 026831 110 RRLENARLGGLGGAQAFA----------KSEKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLKGKKATAF--PAMCN 176 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~----------~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-GLL~g~~~T~h--~~~~~ 176 (232)
+.|.|++|||++...++. -++++....+.+++.||+++-+|..|+. |.+- | .+.+.|.. ....+
T Consensus 85 ~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m-~pki~g--~~~~~TIGnD~dTa~ 161 (217)
T COG3155 85 ELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAM-LPKIFG--FPLRLTIGNDIDTAE 161 (217)
T ss_pred hcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHH-HHHHcC--CceeEEecCCccHHH
Confidence 467899999986433322 2799999999999999999999999864 6643 3 23345543 33345
Q ss_pred hhccC-----c-cCCCcEEE-cCCEEEcCChhhHHHHHHHHHHHhcC
Q 026831 177 KLSDQ-----S-EIENRVVV-DGNLITSRGPGTSMEFALAIVEKFFG 216 (232)
Q Consensus 177 ~~~~~-----~-~~d~~~v~-Dg~~iTa~g~~a~~d~~l~lI~~~~G 216 (232)
.|.+. . ..|..+++ +.+++|... +-++-.+-+.-.|
T Consensus 162 a~~~mG~eHv~cPvd~iV~D~~~KvvtTPA----YMLA~~IaeAAsG 204 (217)
T COG3155 162 ALEEMGAEHVPCPVDDIVVDEDNKVVTTPA----YMLAQNIAEAASG 204 (217)
T ss_pred HHHHhCcccCCCCccceeecCCCceecChH----HHHHHHHHHHHhh
Confidence 55553 1 23444443 467888753 3344444444444
No 38
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.11 E-value=0.00074 Score=56.22 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=38.6
Q ss_pred hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..+.|.+++|||..........+.+.++|+++.++++++.+||.|. .+|+++
T Consensus 36 ~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~-q~l~~~ 87 (200)
T PRK13143 36 ILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGM-QLLFES 87 (200)
T ss_pred HccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH-HHHhhh
Confidence 3456778999963212223445678899999999999999999996 678875
No 39
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.08 E-value=0.00081 Score=55.57 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=39.4
Q ss_pred HhhhccceeccCChhhH-HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARRLENARLGGLGGA-QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~-~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++.+.|.+++|||.... +....+..+.++||++.++++++.+||.|. .+|+++
T Consensus 35 ~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~-QlL~~~ 88 (189)
T PRK13525 35 DLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGM-ILLAKE 88 (189)
T ss_pred HhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHH-HHHHhh
Confidence 34456779999996322 123345667899999999999999999996 668863
No 40
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.07 E-value=0.00061 Score=54.64 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=40.5
Q ss_pred hhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 109 ARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 109 ~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++.|.|++|||.+...+ +.++..+.+.||++.++|.+|.++|.| ..+|.+.
T Consensus 6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~ 58 (158)
T PF07685_consen 6 PDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES 58 (158)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence 35678999999854332 345778999999999999999999999 4667754
No 41
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=96.94 E-value=0.00063 Score=56.42 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=36.7
Q ss_pred hccceeccCChhhHHhhhc--CHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAK--SEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~--~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|++|||......+.. +..+.+.|+++.++|++|.+||.|. .+|++.
T Consensus 37 ~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~-qlL~~~ 88 (194)
T cd01750 37 DADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGY-QMLGKY 88 (194)
T ss_pred CCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHH-HHhhhh
Confidence 4566999999622222222 4468899999999999999999996 668755
No 42
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=96.83 E-value=0.0018 Score=55.82 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 106 EKAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 106 ~~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++++..|.||+|||... +..+.....+.+.|+++.++|+++.++|.|. .+|++.
T Consensus 34 ~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gm-qlLa~~ 88 (248)
T PLN02832 34 EQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGL-IFLAER 88 (248)
T ss_pred HHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhH-HHHHHH
Confidence 45556678999999742 2233333458889999988999999999995 668754
No 43
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.81 E-value=0.0016 Score=53.95 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=37.8
Q ss_pred HhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++.+.|.|++||+.. ... ...++.+.++|+++.++++++.+||.|. .+|+++
T Consensus 33 ~l~~~d~iiipG~~~-~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~-q~l~~~ 87 (198)
T cd01748 33 EILSADKLILPGVGA-FGDAMANLRERGLIEALKEAIASGKPFLGICLGM-QLLFES 87 (198)
T ss_pred HhccCCEEEECCCCc-HHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH-HHhccc
Confidence 344567789999732 221 1233457899999999999999999995 679886
No 44
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=96.80 E-value=0.0018 Score=53.18 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=38.9
Q ss_pred HhhhccceeccCChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARRLENARLGGLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+..+.|.+++|||..... ....+..+.++|+++.++++++.++|.|. .+|+++
T Consensus 32 ~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~-qlL~~~ 85 (183)
T cd01749 32 DLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGL-ILLAKE 85 (183)
T ss_pred HhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHH-HHHHHH
Confidence 344567799999863211 12244567899999999999999999995 678854
No 45
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=96.73 E-value=0.0018 Score=53.01 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=44.3
Q ss_pred hHHHhhhccceeccCChh-hHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 104 EFEKAARRLENARLGGLG-GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 104 ~~~~~~~~d~livpGg~~-~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
.-++++..|.|+||||.. .+..+.....+.+-|+++..+|+++.+.|.|. .+||+
T Consensus 32 ~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGl-IlLak 87 (194)
T COG0311 32 RPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGL-ILLAK 87 (194)
T ss_pred CHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhh-hhhhh
Confidence 455565678899999963 24556677889999999999999999999995 66885
No 46
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=96.70 E-value=0.0027 Score=55.12 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=38.9
Q ss_pred hccceeccCChhhHHhh----------hcCHHHHHHHHHHHhC-CCcEEEEcchhHHhhhhcCCCCCC
Q 026831 110 RRLENARLGGLGGAQAF----------AKSEKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLKGK 166 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~----------~~~~~l~~~Lr~~~~~-g~~v~aic~G~~~lLA~aGLL~g~ 166 (232)
+.+.|++|||...-+.+ ..++.+++.|+++.++ ++.+.+||.| .-+|.++|||.|.
T Consensus 46 ~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNG-fQiL~~~Gllp~~ 112 (259)
T PF13507_consen 46 DFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNG-FQILVELGLLPGG 112 (259)
T ss_dssp C-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHH-HHHHCCCCCSTT-
T ss_pred hCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchH-hHHHHHhCcCCCc
Confidence 34558999986422211 1235568889999998 9999999999 5889999999983
No 47
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.67 E-value=0.0019 Score=60.30 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=40.2
Q ss_pred hhccceeccCChhh--HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 109 ARRLENARLGGLGG--AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 109 ~~~d~livpGg~~~--~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
|+.|.|++|||.+. ...+..+..+.+.|+++.++|++|.++|.|. .+|++
T Consensus 286 ~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~-~~L~~ 337 (451)
T PRK01077 286 PDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGL-MYLGE 337 (451)
T ss_pred CCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHH-HHHHh
Confidence 44577999999743 2345677889999999999999999999996 56774
No 48
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.60 E-value=0.0021 Score=53.60 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=37.2
Q ss_pred HhhhccceeccCChhhHHhh--hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARRLENARLGGLGGAQAF--AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~~~--~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++.+.|.|+|||+....... ...+.+.++|+++.++++++.+||.|. .+|++.
T Consensus 34 ~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~-Qll~~~ 88 (205)
T PRK13141 34 EILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGM-QLLFES 88 (205)
T ss_pred HhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH-HHhhhc
Confidence 44456778999964211111 122357899999999999999999995 679885
No 49
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=96.57 E-value=0.0016 Score=53.59 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=38.0
Q ss_pred HhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCC-CcEEEEcchhHHhhhh
Q 026831 107 KAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESN-RPYGAICASPALVLEP 159 (232)
Q Consensus 107 ~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g-~~v~aic~G~~~lLA~ 159 (232)
++...|.||||||... +..+.....+.+-||++.++| ++|.+.|.|. .+||+
T Consensus 30 dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl-IlLa~ 83 (188)
T PF01174_consen 30 DLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL-ILLAK 83 (188)
T ss_dssp GGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH-HHHEE
T ss_pred HHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH-HHhhh
Confidence 3344677999999642 445566778999999999998 9999999995 67886
No 50
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=96.55 E-value=0.0062 Score=63.04 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=67.4
Q ss_pred CccEEEEEecCCcc-ccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhH-HHhhhccce
Q 026831 38 RLEVILTTVAPGYF-RNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREF-EKAARRLEN 114 (232)
Q Consensus 38 ~~~~I~iLl~~gf~-~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~-~~~~~~d~l 114 (232)
+.+||+|+.+||.. ..|.. .+.. .|..+..+.-+.-.-..... ++. .+ ..+.+.+.|
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~----aG~~~~~v~~~dl~~~~i~~-----s~~-----------~~~~~l~~~~~l 1035 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEK----EGAEVNLVIFRNLNEEALVE-----SVE-----------TMVDEIDKSQIL 1035 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH----cCCceEEEEEecCccccccc-----chh-----------hhhcccccCcEE
Confidence 45799999999975 35555 3333 35444433322110001101 111 12 123345669
Q ss_pred eccCChhhHH----------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCC
Q 026831 115 ARLGGLGGAQ----------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 166 (232)
Q Consensus 115 ivpGg~~~~~----------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~ 166 (232)
++|||+..-+ ....++.+.+-++++.++++.+.+||+| ..+|.+.|||.+.
T Consensus 1036 ~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNG-fQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1036 MLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNG-FQALVKSGLLPYG 1096 (1239)
T ss_pred EEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechH-HHHHHHcCCCcCc
Confidence 9999863211 2334688999999999999999999999 5789999999853
No 51
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.13 E-value=0.0051 Score=51.06 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=36.4
Q ss_pred HhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++.+.|.||+||+...... ......+.++|+++.+.++++.+||.|. .+|+.+
T Consensus 34 ~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~-Qll~~~ 88 (199)
T PRK13181 34 EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM-QLLFES 88 (199)
T ss_pred HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH-HHhhhh
Confidence 3445677889996321111 1122346788998889999999999995 678886
No 52
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=95.83 E-value=0.0095 Score=55.70 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=39.1
Q ss_pred hhccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 109 ARRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 109 ~~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
|+.|.|++|||.+... .+..+..+.+.|+++.++|.+|.++|.| ..+|++
T Consensus 285 ~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG-~~~L~~ 336 (449)
T TIGR00379 285 PDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGG-LMYLSQ 336 (449)
T ss_pred CCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHH-HHHHHh
Confidence 3456799999985322 2445778899999999999999999999 466774
No 53
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=95.82 E-value=0.012 Score=49.61 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=40.6
Q ss_pred hhccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc---------CCCCCCeeec
Q 026831 109 ARRLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH---------GLLKGKKATA 170 (232)
Q Consensus 109 ~~~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a---------GLL~g~~~T~ 170 (232)
...|.|++||+. ..... ..+..+.+.|++..++++++.+||.|. .+|++. |+++|+-...
T Consensus 38 ~~~d~iIlPG~g-~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~-Qll~~~~~~~~~~glg~~~G~v~~~ 109 (210)
T CHL00188 38 AQVHALVLPGVG-SFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGL-HLLFETSEEGKEEGLGIYKGQVKRL 109 (210)
T ss_pred hhCCEEEECCCC-chHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHH-HHHhhccccCCcCCccceeEEEEEC
Confidence 346778999943 12111 122245677888888899999999995 678864 5788766544
No 54
>PRK00784 cobyric acid synthase; Provisional
Probab=95.81 E-value=0.0089 Score=56.46 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=39.6
Q ss_pred HHhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 106 EKAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 106 ~~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
+++|+.|.|++|||...... +..+..+.+.|+++.++|.++.++|.| ..+|++
T Consensus 286 ~~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G-~~~L~~ 340 (488)
T PRK00784 286 EPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGG-YQMLGR 340 (488)
T ss_pred cccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHH-HHHHhh
Confidence 34555677999999743222 234556889999999999999999999 467875
No 55
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=95.62 E-value=0.013 Score=47.94 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=37.0
Q ss_pred hccceeccCChhhH-H-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGA-Q-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~-~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|+++||..+. . .....+.+.++|+++.++++++.+||.|. .+|+.+
T Consensus 46 ~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~-q~l~~~ 97 (188)
T cd01741 46 DYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH-QLLARA 97 (188)
T ss_pred cCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH-HHHHHH
Confidence 45669999996432 1 11123678999999999999999999996 667754
No 56
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.61 E-value=0.014 Score=54.98 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=38.7
Q ss_pred hhhccceeccCChhhHHhh--hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 108 AARRLENARLGGLGGAQAF--AKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 108 ~~~~d~livpGg~~~~~~~--~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
+|+.|.|++|||....... ..+..+.+.|+++.++|.+|.++|.| ..+|.+
T Consensus 282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG-~q~Lg~ 334 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGG-YQMLGK 334 (475)
T ss_pred cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHH-HHHhhh
Confidence 4556789999997433222 23455788999999999999999999 577887
No 57
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=95.61 E-value=0.033 Score=58.39 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=42.6
Q ss_pred ccceeccCChhh-------H---HhhhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhh-hcCCCCCC
Q 026831 111 RLENARLGGLGG-------A---QAFAKSEKLVNMLKKQK-ESNRPYGAICASPALVLE-PHGLLKGK 166 (232)
Q Consensus 111 ~d~livpGg~~~-------~---~~~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA-~aGLL~g~ 166 (232)
.+.|++|||+.. . .....++.+.+.++++. +.++.+.+||+| ..+|. +.|||.|.
T Consensus 1101 ~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNG-fQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1101 FRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNG-CQMLSNLLEWIPGT 1167 (1310)
T ss_pred eeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHH-HHHHHHHhCcCCCC
Confidence 355899998521 0 11345788999999998 889999999999 57788 99999874
No 58
>PRK08250 glutamine amidotransferase; Provisional
Probab=95.52 E-value=0.016 Score=49.52 Aligned_cols=49 Identities=6% Similarity=0.110 Sum_probs=35.6
Q ss_pred ccceeccCChhhHHh-hhcC-----HHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQA-FAKS-----EKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~-~~~~-----~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.+||.||..+..+ .... ....+|||++.+.++++.+||.|. -+||++
T Consensus 46 ~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~-Qlla~a 100 (235)
T PRK08250 46 FDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA-QLIGEA 100 (235)
T ss_pred cCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhH-HHHHHH
Confidence 456889998533221 1111 467899999999999999999996 668865
No 59
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=95.45 E-value=0.042 Score=57.62 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=41.6
Q ss_pred hccceeccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhhhcC-CCCC
Q 026831 110 RRLENARLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICASPALVLEPHG-LLKG 165 (232)
Q Consensus 110 ~~d~livpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA~aG-LL~g 165 (232)
+.+.|++|||+.. ......|+.+.+.++++. ++++.+.+||+| ..+|.+.| |+.|
T Consensus 1080 ~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNG-fQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1080 DFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNG-CQMMSNLKEIIPG 1146 (1290)
T ss_pred hCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHH-HHHHHHhCCccCC
Confidence 3456899998521 112335788999999966 889999999999 57899998 7765
No 60
>PRK07053 glutamine amidotransferase; Provisional
Probab=95.41 E-value=0.015 Score=49.65 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=36.0
Q ss_pred ccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.|||+||..+..+. ..-....++||++.+.++++.+||.|. -+|+++
T Consensus 48 ~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~-Qlla~a 99 (234)
T PRK07053 48 PDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGA-QLIARA 99 (234)
T ss_pred CCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccH-HHHHHH
Confidence 4558999985332221 122478899999999999999999995 678865
No 61
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.40 E-value=0.019 Score=48.11 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC
Q 026831 106 EKAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG 161 (232)
Q Consensus 106 ~~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG 161 (232)
+++.+.|.|||||+...... +........+++...+.++++.+||.|. -+|+++|
T Consensus 37 ~~l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~-q~l~~~~ 94 (209)
T PRK13146 37 DAVAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGM-QLLFERG 94 (209)
T ss_pred HHhcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHH-HHHhhcc
Confidence 44456778999997421111 1111122334454556899999999995 6799873
No 62
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=95.37 E-value=0.024 Score=46.15 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=35.9
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|+++||.+++. .+....++++++.++++++.+||.|. .+|+.+
T Consensus 39 ~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~PvlGIC~G~-Q~l~~~ 85 (178)
T cd01744 39 DPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPIFGICLGH-QLLALA 85 (178)
T ss_pred CCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCEEEECHHH-HHHHHH
Confidence 356689999853332 34678889999999999999999996 567753
No 63
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.31 E-value=0.031 Score=46.98 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=39.0
Q ss_pred hHHHhhhccceeccCChh---hHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 104 EFEKAARRLENARLGGLG---GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 104 ~~~~~~~~d~livpGg~~---~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..+++...|.|++||+.. .+..+ ....+.+.|+++.++++++.+||.|. .+|+++
T Consensus 31 ~~~~l~~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~-Q~l~~~ 88 (210)
T PRK14004 31 DPETIENSKALILPGDGHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGF-QILFES 88 (210)
T ss_pred CHHHhccCCEEEECCCCchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhH-HHHHHh
Confidence 344444667799999852 12222 23358888999889999999999995 678874
No 64
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=95.29 E-value=0.017 Score=43.98 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=32.4
Q ss_pred hccceeccCChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 110 RRLENARLGGLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 110 ~~d~livpGg~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
..|.|++|||..... ....... .+.|+++.++|+++.+||.|+ . +|
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGA-y-~a 90 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGA-Y-LA 90 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCc-c-ce
Confidence 457799999853211 1122333 888888889999999999995 5 55
No 65
>PHA03366 FGAM-synthase; Provisional
Probab=95.21 E-value=0.057 Score=56.65 Aligned_cols=97 Identities=8% Similarity=-0.038 Sum_probs=62.3
Q ss_pred CccEEEEEecCCccc-cccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhcccee
Q 026831 38 RLEVILTTVAPGYFR-NHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENA 115 (232)
Q Consensus 38 ~~~~I~iLl~~gf~~-~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~li 115 (232)
+.+||+|+.+||..- .|.+ .+.. .|..++.|.-+.- .+. . .+ .+.+.|+
T Consensus 1027 ~~prVaIl~~pG~N~~~e~~~Af~~----aGf~~~~v~~~dL-----~~~----------------~-~l---~~f~glv 1077 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPHALLAAFTN----AGFDPYPVSIEEL-----KDG----------------T-FL---DEFSGLV 1077 (1304)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH----cCCceEEEEeecC-----CCC----------------C-cc---ccceEEE
Confidence 357999999999764 4444 3332 3544444332111 000 0 01 1233478
Q ss_pred ccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcc-hhHHhhhhcCCCC
Q 026831 116 RLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLK 164 (232)
Q Consensus 116 vpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~-G~~~lLA~aGLL~ 164 (232)
+|||+.. ......|+.+.+.++++. +.++.+.+||+ | ..+|.+.|+|.
T Consensus 1078 ~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G-~Q~L~~lgll~ 1137 (1304)
T PHA03366 1078 IGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELG-CQILFALKAVG 1137 (1304)
T ss_pred EcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHH-HHHHHHcCCcc
Confidence 8888632 112346889999999998 56999999999 9 68899999994
No 66
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=95.18 E-value=0.029 Score=46.50 Aligned_cols=49 Identities=14% Similarity=0.001 Sum_probs=31.5
Q ss_pred hccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|++||+...... +.... ...+++++.+.++++.+||.|. .+|+++
T Consensus 36 ~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~-Qll~~~ 87 (196)
T TIGR01855 36 LADKLILPGVGAFGAAMARLRENG-LDLFVELVVRLGKPVLGICLGM-QLLFER 87 (196)
T ss_pred cCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHHHhCCCCEEEECHHH-HHhhhc
Confidence 4566888995311111 11111 3344477888899999999995 679987
No 67
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.09 E-value=0.026 Score=46.77 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 106 EKAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 106 ~~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+++...|.||+||....... ..+...+.+.|+ +.+++|.+||.|. .+|+++
T Consensus 34 ~~~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~---~~~~PilGIClG~-Qll~~~ 86 (196)
T PRK13170 34 DVILAADKLFLPGVGTAQAAMDQLRERELIDLIK---ACTQPVLGICLGM-QLLGER 86 (196)
T ss_pred HHhCCCCEEEECCCCchHHHHHHHHHcChHHHHH---HcCCCEEEECHHH-HHHhhh
Confidence 34444567889994211111 111123444444 4589999999995 678866
No 68
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=94.86 E-value=0.025 Score=52.32 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=40.7
Q ss_pred hccceeccCChhhH--HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 110 RRLENARLGGLGGA--QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 110 ~~d~livpGg~~~~--~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
+.|.|++|||++.. ..+.++..+.+.|+++++.|++|-+-|.| -+.|.+
T Consensus 288 ~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~ 338 (451)
T COG1797 288 DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGG-LMYLGE 338 (451)
T ss_pred CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEeccc-ceeehh
Confidence 36779999998643 34667899999999999999999999999 466764
No 69
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=94.79 E-value=0.043 Score=52.50 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=36.7
Q ss_pred HhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++...|.||+||+.. ... ...+..+.+.|+++.+.++++.+||.|. .+|+++
T Consensus 41 ~l~~~D~lIlpG~gs-~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~-QlLa~~ 95 (538)
T PLN02617 41 DILNADRLIFPGVGA-FGSAMDVLNNRGMAEALREYIQNDRPFLGICLGL-QLLFES 95 (538)
T ss_pred hhccCCEEEECCCCC-HHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHH-HHHhhh
Confidence 444567799999642 221 1223346788888888999999999995 679864
No 70
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=94.60 E-value=0.057 Score=44.43 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=34.8
Q ss_pred hccceeccCChhhHHh--------------hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQA--------------FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~--------------~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|++|||...... ..++....++|+++.+.++++.+||.|. .+|+.+
T Consensus 53 ~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~-Q~l~~~ 116 (189)
T cd01745 53 LLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGM-QLLNVA 116 (189)
T ss_pred hCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchH-HHHHHH
Confidence 4677999999521110 1123345788999988999999999996 557754
No 71
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=94.30 E-value=0.091 Score=43.83 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=40.1
Q ss_pred cchhHHHhhhccceeccCChh---hHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 101 MSREFEKAARRLENARLGGLG---GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 101 ~~~~~~~~~~~d~livpGg~~---~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
...+.+++...|-||+||-.. .+..+ +.-.+.+.|++....++++.+||-|. .+|.+
T Consensus 30 vs~d~~~i~~AD~liLPGVGaf~~am~~L-~~~gl~~~i~~~~~~~kP~LGIClGM-QlLfe 89 (204)
T COG0118 30 VSRDPEEILKADKLILPGVGAFGAAMANL-RERGLIEAIKEAVESGKPFLGICLGM-QLLFE 89 (204)
T ss_pred EecCHHHHhhCCEEEecCCCCHHHHHHHH-HhcchHHHHHHHHhcCCCEEEEeHhH-Hhhhh
Confidence 444555666678899999421 12222 33478999999999999999999996 55664
No 72
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.28 E-value=0.11 Score=43.19 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=33.3
Q ss_pred HhhhccceeccCChhhHHhhhc---CHHHHHHHHHH-HhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARRLENARLGGLGGAQAFAK---SEKLVNMLKKQ-KESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~~~~~---~~~l~~~Lr~~-~~~g~~v~aic~G~~~lLA~a 160 (232)
++...|.||+||+.. ..+... +-.+...|++. .+.++++.+||.|. .+|+.+
T Consensus 34 ~l~~~d~lilPG~g~-~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~-Q~l~~~ 89 (201)
T PRK13152 34 DLQKADKLLLPGVGS-FKEAMKNLKELGFIEALKEQVLVQKKPILGICLGM-QLFLER 89 (201)
T ss_pred HHcCCCEEEECCCCc-hHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhH-HHHhhc
Confidence 344567788899852 222111 11234556554 47899999999995 679876
No 73
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=94.24 E-value=0.061 Score=44.06 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=33.2
Q ss_pred cceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 112 LENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 112 d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
|.||+|||.... .+.....++++..+.++++.+||-|. -+|+.+
T Consensus 43 ~glii~Gg~~~~----~~~~~~~~i~~~~~~~~PilGIC~G~-Qll~~~ 86 (188)
T TIGR00888 43 KGIILSGGPSSV----YAENAPRADEKIFELGVPVLGICYGM-QLMAKQ 86 (188)
T ss_pred CEEEECCCCCCc----CcCCchHHHHHHHhCCCCEEEECHHH-HHHHHh
Confidence 469999996322 22335678888889999999999995 678865
No 74
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=94.24 E-value=0.048 Score=50.81 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=35.6
Q ss_pred hhccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 109 ARRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 109 ~~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
|+.|.|++|||.+... .+..+... +.|+++.++|.+|.++|.| ..+|++
T Consensus 273 p~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG-~q~L~~ 323 (433)
T PRK13896 273 PDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGG-LMALAE 323 (433)
T ss_pred CCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehH-HHHhhc
Confidence 4457799999985322 12233334 8899999999999999999 466875
No 75
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.16 E-value=0.068 Score=44.41 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=33.4
Q ss_pred HHhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 106 EKAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 106 ~~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+++.+.|.||+||+.. ... ......+.+.|++ ..++++.+||.|. .+|++.
T Consensus 33 ~~l~~~D~lIlPG~g~-~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGm-QlL~~~ 86 (192)
T PRK13142 33 KIIDQAETIILPGVGH-FKDAMSEIKRLNLNAILAK--NTDKKMIGICLGM-QLMYEH 86 (192)
T ss_pred HHhccCCEEEECCCCC-HHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHH-HHHhhh
Confidence 4444567799999842 111 1122246777777 5689999999995 668753
No 76
>PRK05665 amidotransferase; Provisional
Probab=94.15 E-value=0.052 Score=46.62 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=36.9
Q ss_pred hccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.+||.||..+..+ ..--.++.+|||+..++++++.+||-|. -+||++
T Consensus 57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~Gh-Qlla~A 107 (240)
T PRK05665 57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGH-QLLALL 107 (240)
T ss_pred cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHH-HHHHHH
Confidence 3566899998533221 1122578899999999999999999995 678865
No 77
>PRK09065 glutamine amidotransferase; Provisional
Probab=94.11 E-value=0.044 Score=46.88 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.1
Q ss_pred hccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|||.||..+..+ ...-.++.+||+++.+.+++|.+||-|. -+|+.+
T Consensus 54 ~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~-Qlla~a 104 (237)
T PRK09065 54 DFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH-QLLAHA 104 (237)
T ss_pred hcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH-HHHHHH
Confidence 4566888888532211 1112567899999999999999999995 678865
No 78
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=94.07 E-value=0.041 Score=44.93 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=36.8
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.++|+||..... ..+....+++++...++++.+||-|. -+||.+
T Consensus 42 ~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~~PilGIC~G~-Q~la~~ 88 (192)
T PF00117_consen 42 DYDGIIISGGPGSPY---DIEGLIELIREARERKIPILGICLGH-QILAHA 88 (192)
T ss_dssp TSSEEEEECESSSTT---SHHHHHHHHHHHHHTTSEEEEETHHH-HHHHHH
T ss_pred CCCEEEECCcCCccc---cccccccccccccccceEEEEEeehh-hhhHHh
Confidence 467799999864332 15788888999988999999999995 678854
No 79
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=93.92 E-value=0.19 Score=52.68 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=42.7
Q ss_pred ccceeccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhhhcCCCCCC
Q 026831 111 RLENARLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICASPALVLEPHGLLKGK 166 (232)
Q Consensus 111 ~d~livpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA~aGLL~g~ 166 (232)
.+.|++|||+.. ......++.+.+.++++. +.++.+.+||+| ..+|.+.|||.|-
T Consensus 1083 ~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNG-fQiL~~lgllPg~ 1148 (1307)
T PLN03206 1083 FRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNG-CQLMALLGWVPGP 1148 (1307)
T ss_pred eeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHH-HHHHHHcCCCCCC
Confidence 345888998621 112345788999999998 559999999999 5889999999875
No 80
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=93.80 E-value=0.075 Score=50.13 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=34.1
Q ss_pred HHHhhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 105 FEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 105 ~~~~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.+++...|.||+|||.. .....-...+.++|+++ |++|.+||.| ..+|++.
T Consensus 31 ~~~l~~~D~lILPGG~~-~~~~~l~~~l~~~i~~~---g~pvlGICgG-~QmLg~~ 81 (476)
T PRK06278 31 IKEIKDLDGLIIPGGSL-VESGSLTDELKKEILNF---DGYIIGICSG-FQILSEK 81 (476)
T ss_pred hHHhccCCEEEECCCch-hhcchHHHHHHHHHHHc---CCeEEEEcHH-HHhcccc
Confidence 34555678899999851 11100124566666665 9999999999 5778876
No 81
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=93.79 E-value=0.079 Score=44.43 Aligned_cols=53 Identities=17% Similarity=0.001 Sum_probs=37.8
Q ss_pred HHHhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 105 FEKAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 105 ~~~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
.+.+...|.|++|||.. ... ......+.+.|++.+++|++++++|.|+ .++.+
T Consensus 75 ~~~l~~ad~I~l~GG~~-~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa-~i~~~ 129 (212)
T cd03146 75 LDALLEADVIYVGGGNT-FNLLAQWREHGLDAILKAALERGVVYIGWSAGS-NCWFP 129 (212)
T ss_pred HHHHhcCCEEEECCchH-HHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH-HhhCC
Confidence 34445678899999853 211 1233467788888889999999999995 56776
No 82
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=93.61 E-value=0.091 Score=44.97 Aligned_cols=51 Identities=16% Similarity=0.054 Sum_probs=37.2
Q ss_pred hhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 108 AARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 108 ~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
+...|.|+|+||..- .-.......+.+.|++..++|+++++.|.|+ .+++.
T Consensus 77 l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA-ii~~~ 128 (233)
T PRK05282 77 IENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA-NVAGP 128 (233)
T ss_pred HhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH-Hhhhc
Confidence 456788999999631 1112345568888999999999999999995 55554
No 83
>PRK06490 glutamine amidotransferase; Provisional
Probab=93.44 E-value=0.064 Score=45.98 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=35.0
Q ss_pred ccceeccCChhhHHhh-hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAF-AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~-~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.++|.||..+..+. ..-..+.+||+++.+.++++.+||-|. -+|+++
T Consensus 53 ~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~-Qlla~a 102 (239)
T PRK06490 53 HAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGA-QMLARH 102 (239)
T ss_pred cCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhH-HHHHHH
Confidence 4557888875322211 112457799999999999999999995 779876
No 84
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=93.22 E-value=0.094 Score=44.15 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=35.5
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|||.||..++. ++....+|++++.+++++|.+||-|. -+|+.+
T Consensus 46 ~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~PiLGIC~G~-Qlla~a 92 (214)
T PRK07765 46 QFDGVLLSPGPGTPE---RAGASIDMVRACAAAGTPLLGVCLGH-QAIGVA 92 (214)
T ss_pred CCCEEEECCCCCChh---hcchHHHHHHHHHhCCCCEEEEccCH-HHHHHH
Confidence 466688888854332 34456799999999999999999995 668754
No 85
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=93.02 E-value=0.23 Score=45.22 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=35.7
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.||++||.+++. +++...++++++.+.++++.+||-|. -+|+.+
T Consensus 218 ~~DGIvLSgGPgdp~---~~~~~~~~i~~~~~~~~PilGIClG~-QlLa~a 264 (360)
T PRK12564 218 NPDGVFLSNGPGDPA---ALDYAIEMIRELLEKKIPIFGICLGH-QLLALA 264 (360)
T ss_pred CCCEEEEeCCCCChH---HHHHHHHHHHHHHHcCCeEEEECHHH-HHHHHH
Confidence 356799998854333 34677889999988899999999996 567754
No 86
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=92.79 E-value=0.16 Score=41.67 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=32.5
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.|||.||.+... ..+.+.++|++ .+.++++.+||-|. -+|+.+
T Consensus 43 ~~d~iIi~gGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~-Qlla~~ 88 (190)
T PRK06895 43 NFSHILISPGPDVPR---AYPQLFAMLER-YHQHKSILGVCLGH-QTLCEF 88 (190)
T ss_pred cCCEEEECCCCCChH---HhhHHHHHHHH-hcCCCCEEEEcHHH-HHHHHH
Confidence 456677776643222 23567888986 67899999999995 678865
No 87
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=92.70 E-value=0.31 Score=42.13 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=36.2
Q ss_pred hccceeccCChhhHH-------------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQ-------------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~-------------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|-|+++||..+.. +..+|....++|+.+.+++++|.+||-|. -+|+.+
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~-Qllnva 123 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGL-QELVVA 123 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhH-HHHHHH
Confidence 367799999832221 11234566799999999999999999995 667755
No 88
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=92.50 E-value=0.25 Score=40.16 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=38.5
Q ss_pred hHHHhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCC-CcEEEEcchhHHhhh
Q 026831 104 EFEKAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESN-RPYGAICASPALVLE 158 (232)
Q Consensus 104 ~~~~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g-~~v~aic~G~~~lLA 158 (232)
+-.++..+|.|+||||... +....+...+.+-|-.+..++ +++.+.|.|. ++|.
T Consensus 50 T~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGm-I~LS 105 (226)
T KOG3210|consen 50 TKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGM-IYLS 105 (226)
T ss_pred CHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhh-hhhh
Confidence 4456666789999999642 233344455888888887776 9999999995 4455
No 89
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=92.16 E-value=0.3 Score=39.73 Aligned_cols=46 Identities=9% Similarity=0.087 Sum_probs=29.4
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.||+.||..... ++. ....+++...+++++.+||-|. -+|+.+
T Consensus 42 ~~dgvil~gG~~~~~---~~~-~~~~i~~~~~~~~PvlGIC~G~-Qlla~~ 87 (184)
T cd01743 42 NPDAIVISPGPGHPE---DAG-ISLEIIRALAGKVPILGVCLGH-QAIAEA 87 (184)
T ss_pred CCCEEEECCCCCCcc---cch-hHHHHHHHHhcCCCEEEECHhH-HHHHHH
Confidence 456677766643221 222 4455555566789999999995 678865
No 90
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=91.51 E-value=0.57 Score=49.11 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=40.8
Q ss_pred cceeccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcc-hhHHhhhhcCCCCC
Q 026831 112 LENARLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLKG 165 (232)
Q Consensus 112 d~livpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~-G~~~lLA~aGLL~g 165 (232)
+.|++|||... ......++.+.+.++++. +.++.+.+||+ | ..+|.+.|+|..
T Consensus 975 ~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G-~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739 975 SGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELG-CQLLLALNIVGY 1039 (1202)
T ss_pred EEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHH-HHHHHHcCCCcC
Confidence 34777887631 112345889999999998 56999999999 9 688999999853
No 91
>PRK00758 GMP synthase subunit A; Validated
Probab=91.50 E-value=0.23 Score=40.45 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=31.5
Q ss_pred Hhhhc-cceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 107 KAARR-LENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 107 ~~~~~-d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++.+. |.|+++||. +.. ....+.+||+ +.++++.+||-|. .+|+.+
T Consensus 37 ~l~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~PilGIC~G~-Q~L~~a 83 (184)
T PRK00758 37 EIKAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVPILGICLGH-QLIAKA 83 (184)
T ss_pred HHhhcCCEEEECCCC-Chh---hccccHHHHH---hCCCCEEEEeHHH-HHHHHh
Confidence 33344 779999985 332 2234566776 4589999999995 678866
No 92
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=91.03 E-value=0.31 Score=44.43 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=35.3
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
..+.||+|||..-.....-+..-.+.||++.++|....+||.|+ . +|.
T Consensus 49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGa-Y-~as 96 (367)
T PF09825_consen 49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGA-Y-YAS 96 (367)
T ss_pred CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcch-h-hhc
Confidence 34568999997322222236777889999999999999999995 5 563
No 93
>PRK07567 glutamine amidotransferase; Provisional
Probab=91.00 E-value=0.34 Score=41.57 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=31.4
Q ss_pred ccceeccCChhhHHhh--hcC-------HHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAF--AKS-------EKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~--~~~-------~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.+||.||..+..+. ... ..+.++++.+...++++.+||-|. .+|+.+
T Consensus 52 ~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~-Qlla~a 109 (242)
T PRK07567 52 YSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV-GTLGHH 109 (242)
T ss_pred ccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH-HHHHHH
Confidence 4668888885322211 011 223445555568999999999995 678865
No 94
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=90.93 E-value=0.22 Score=41.56 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=35.5
Q ss_pred cceeccCChhhHHhhhc--CHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 112 LENARLGGLGGAQAFAK--SEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 112 d~livpGg~~~~~~~~~--~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
|.+||.||..+.. ... .++..+||++....+++|.+||.|. -+||++
T Consensus 47 ~giIlsGgp~sv~-~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~-Ql~A~~ 95 (198)
T COG0518 47 DGIIISGGPMSVY-DEDPWLPREKDLIKDAGVPGKPVLGICLGH-QLLAKA 95 (198)
T ss_pred CEEEEcCCCCCCc-cccccchhHHHHHHHhCCCCCCEEEEChhH-HHHHHH
Confidence 5589999853221 223 5788999999998999999999995 668853
No 95
>PRK05670 anthranilate synthase component II; Provisional
Probab=90.77 E-value=0.52 Score=38.63 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=30.7
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.||+.||.+++.+ ......+|++. ..++++.+||-|. .+|+.+
T Consensus 44 ~dglIlsgGpg~~~d---~~~~~~~l~~~-~~~~PvLGIClG~-Qlla~a 88 (189)
T PRK05670 44 PDAIVLSPGPGTPAE---AGISLELIREF-AGKVPILGVCLGH-QAIGEA 88 (189)
T ss_pred CCEEEEcCCCCChHH---cchHHHHHHHh-cCCCCEEEECHHH-HHHHHH
Confidence 466888777544432 23456677764 5679999999995 678865
No 96
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=90.67 E-value=0.29 Score=40.22 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=31.6
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+|.|||-||.+++. ++....++++++ .++++|.+||-|. .+|+.+
T Consensus 44 ~d~iilsgGpg~p~---~~~~~~~~i~~~-~~~~PvLGIC~G~-Qll~~~ 88 (188)
T TIGR00566 44 PLLIVISPGPCTPN---EAGISLEAIRHF-AGKLPILGVCLGH-QAMGQA 88 (188)
T ss_pred CCEEEEcCCCCChh---hcchhHHHHHHh-ccCCCEEEECHHH-HHHHHH
Confidence 45577777754343 233447888877 6789999999995 668855
No 97
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=90.63 E-value=0.36 Score=41.30 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=33.2
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
..|.|++|||.+ .. ..+....+++...+.++++.+||.|. -+|+
T Consensus 55 ~~dgivl~GG~~-~~---~~~~~~~~i~~~~~~~~PvlGIClG~-Q~l~ 98 (235)
T cd01746 55 GADGILVPGGFG-IR---GVEGKILAIKYARENNIPFLGICLGM-QLAV 98 (235)
T ss_pred cCCEEEECCCCC-Cc---chhhHHHHHHHHHHCCceEEEEEhHH-HHHH
Confidence 456699999863 22 23466788999889999999999995 4454
No 98
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=90.30 E-value=0.64 Score=42.32 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=34.1
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+|.||++||.+++. ..+..+++++++.+ ++|+.+||-|. -+|+.+
T Consensus 215 pDGIiLSgGPgdp~---~~~~~i~~i~~~~~-~~PILGIClG~-QlLa~a 259 (358)
T TIGR01368 215 PDGIFLSNGPGDPA---AVEPAIETIRKLLE-KIPIFGICLGH-QLLALA 259 (358)
T ss_pred CCEEEECCCCCCHH---HHHHHHHHHHHHHc-CCCEEEECHHH-HHHHHH
Confidence 37799999854332 34667888888887 89999999995 668754
No 99
>PRK06186 hypothetical protein; Validated
Probab=89.70 E-value=0.42 Score=40.79 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=33.1
Q ss_pred hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831 109 ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP 153 (232)
Q Consensus 109 ~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~ 153 (232)
...|-++||||.+ . +.-+--+..++.+..+++|+.+||-|.
T Consensus 52 ~~~dgilvpgGfg-~---rg~~Gki~ai~~Are~~iP~LGIClGm 92 (229)
T PRK06186 52 AGFDGIWCVPGSP-Y---RNDDGALTAIRFARENGIPFLGTCGGF 92 (229)
T ss_pred hhCCeeEeCCCCC-c---ccHhHHHHHHHHHHHcCCCeEeechhh
Confidence 3457799999985 2 345677788999999999999999995
No 100
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=89.45 E-value=0.71 Score=40.36 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=30.6
Q ss_pred hHHH-hhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCC--CcEEEEcchhHHhhhh
Q 026831 104 EFEK-AARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESN--RPYGAICASPALVLEP 159 (232)
Q Consensus 104 ~~~~-~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g--~~v~aic~G~~~lLA~ 159 (232)
.+++ ....|-|++|||..+... ......+.++..+..++| .+|.++|-|. .+|+.
T Consensus 47 ~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~-QlL~~ 107 (273)
T cd01747 47 YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGF-ELLTY 107 (273)
T ss_pred HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHH-HHHHH
Confidence 3444 234566999998422211 111123334444444444 7999999995 56775
No 101
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=89.15 E-value=0.8 Score=41.63 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=34.0
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|-||++||.+++. ......++++++.++ +|+.+||-|. -+|+.+
T Consensus 208 ~~DGIiLsgGPgdp~---~~~~~~~~i~~~~~~-~PvlGIClG~-QlLa~a 253 (354)
T PRK12838 208 NPDGIVLSNGPGDPK---ELQPYLPEIKKLISS-YPILGICLGH-QLIALA 253 (354)
T ss_pred CCCEEEEcCCCCChH---HhHHHHHHHHHHhcC-CCEEEECHHH-HHHHHH
Confidence 357799999864332 345677888888776 9999999995 668754
No 102
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=88.84 E-value=0.36 Score=38.96 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=29.1
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.||+|||.....+ ...+.+. +...+.++++.+||.|. .+|+.+
T Consensus 41 ~~dgvIl~Gg~~~~~~-~~~~~~~---~~~~~~~~PilGIC~G~-Qll~~~ 86 (181)
T cd01742 41 NPKGIILSGGPSSVYE-EDAPRVD---PEIFELGVPVLGICYGM-QLIAKA 86 (181)
T ss_pred CCCEEEECCCcccccc-cccchhh---HHHHhcCCCEEEEcHHH-HHHHHh
Confidence 3566999998532211 1122333 44445699999999995 668874
No 103
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=88.73 E-value=1.1 Score=38.36 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=36.3
Q ss_pred ccceeccCChhhHH---------------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQ---------------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~---------------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
-|-|+++||. +.+ +..+|.--+..||++.++++||.+||-|. -+|.-+
T Consensus 61 iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~-QllNVa 123 (243)
T COG2071 61 IDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGL-QLLNVA 123 (243)
T ss_pred ccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccch-HHHHHH
Confidence 5669999993 211 12346778899999999999999999995 667643
No 104
>PRK05380 pyrG CTP synthetase; Validated
Probab=87.35 E-value=0.75 Score=43.91 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=34.6
Q ss_pred hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
....|-|++|||.+ .. ..+..+.+++.+.++++|+.+||-|. -+++
T Consensus 341 L~~~DGIIlpGGfG-~~---~~~g~i~~i~~a~e~~iPiLGIClGm-Qll~ 386 (533)
T PRK05380 341 LKGVDGILVPGGFG-ER---GIEGKILAIRYARENNIPFLGICLGM-QLAV 386 (533)
T ss_pred hhcCCEEEecCCCC-cc---ccccHHHHHHHHHHCCCcEEEEchHH-HHHH
Confidence 33467799999974 22 24456788888889999999999995 4455
No 105
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=86.23 E-value=1.6 Score=40.13 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=33.3
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
..|.||+.||.+++. .....++.++++.+.+.++.+||-|- -+|+.+
T Consensus 233 ~~dgIilSgGPg~p~---~~~~~i~~i~~~~~~~~PilGIClGh-QlLa~a 279 (382)
T CHL00197 233 QPDGILLSNGPGDPS---AIHYGIKTVKKLLKYNIPIFGICMGH-QILSLA 279 (382)
T ss_pred CCCEEEEcCCCCChh---HHHHHHHHHHHHHhCCCCEEEEcHHH-HHHHHH
Confidence 356688888854332 23456677777777789999999995 667754
No 106
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=85.98 E-value=1 Score=35.55 Aligned_cols=51 Identities=14% Similarity=-0.004 Sum_probs=35.2
Q ss_pred hhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 108 AARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 108 ~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
+...|.|++-||... ......+..+.+.|++..++|+++++...|+ .++..
T Consensus 33 i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA-~i~~~ 84 (154)
T PF03575_consen 33 IREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGA-MILGP 84 (154)
T ss_dssp HHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHH-HCTSS
T ss_pred HHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHH-hhccC
Confidence 456788999999631 1122345678999999999999999999995 55553
No 107
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=84.41 E-value=2.3 Score=35.75 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=30.7
Q ss_pred hHHHh-hhccceeccCChhhHH---------------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 104 EFEKA-ARRLENARLGGLGGAQ---------------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 104 ~~~~~-~~~d~livpGg~~~~~---------------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
.++.. ...|-|++|||..+.. +..+|.--..+++.+.+++++|.+||-|. -+|.-
T Consensus 51 ~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~-Q~lnv 121 (217)
T PF07722_consen 51 ELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGM-QLLNV 121 (217)
T ss_dssp HHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHH-HHHHH
T ss_pred HHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHH-HHHHH
Confidence 34443 3467799999962220 11234445567788888999999999995 55653
No 108
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=84.31 E-value=2.9 Score=35.08 Aligned_cols=50 Identities=16% Similarity=0.051 Sum_probs=36.7
Q ss_pred hhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 108 AARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 108 ~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
+...|.|++.||... ..+......+.+.|++.+++|.++++...|+ .++.
T Consensus 81 l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA-~i~~ 131 (217)
T cd03145 81 LRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGA-AVMS 131 (217)
T ss_pred HHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHH-Hhhh
Confidence 445788999999631 1122345678889999999999999999996 4454
No 109
>PRK13566 anthranilate synthase; Provisional
Probab=84.24 E-value=1.9 Score=42.90 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=32.7
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.||+.||.+.+. +..+..+|+++.+++++|.+||-|. -+|+.+
T Consensus 570 ~DgVVLsgGpgsp~----d~~~~~lI~~a~~~~iPILGIClG~-QlLa~a 614 (720)
T PRK13566 570 PDLVVLSPGPGRPS----DFDCKATIDAALARNLPIFGVCLGL-QAIVEA 614 (720)
T ss_pred CCEEEECCCCCChh----hCCcHHHHHHHHHCCCcEEEEehhH-HHHHHH
Confidence 45566655543332 3357899999999999999999995 678865
No 110
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=84.06 E-value=1.9 Score=35.89 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=35.2
Q ss_pred HhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 107 KAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
.+...|.|+++||.. ..- ......+.+.|++.+++|.++++.|.|+ .++.+
T Consensus 77 ~l~~ad~I~~~GG~~-~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA-~~~~~ 129 (210)
T cd03129 77 RLLEADGIFVGGGNQ-LRLLSVLRETPLLDAILKRVARGVVIGGTSAGA-AVMGE 129 (210)
T ss_pred HHhhCCEEEEcCCcH-HHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH-HHhhh
Confidence 345678899999963 221 1223346666777777999999999996 56776
No 111
>CHL00101 trpG anthranilate synthase component 2
Probab=84.02 E-value=0.84 Score=37.50 Aligned_cols=45 Identities=11% Similarity=-0.008 Sum_probs=29.1
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.|||-||.+.+.+ + .....+.+..+.++++.+||-|. -+||.+
T Consensus 44 ~dgiiisgGpg~~~~---~-~~~~~i~~~~~~~~PiLGIClG~-Qlla~~ 88 (190)
T CHL00101 44 IRHIIISPGPGHPRD---S-GISLDVISSYAPYIPILGVCLGH-QSIGYL 88 (190)
T ss_pred CCEEEECCCCCChHH---C-cchHHHHHHhcCCCcEEEEchhH-HHHHHH
Confidence 566777777543332 2 22333444567899999999995 678865
No 112
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=83.93 E-value=0.98 Score=37.07 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=30.8
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.||+-||-+.+. +......+++. ...++++.+||-|. -+|+.+
T Consensus 44 ~d~iils~GPg~p~---~~~~~~~~~~~-~~~~~PiLGIClG~-Q~la~a 88 (187)
T PRK08007 44 PQKIVISPGPCTPD---EAGISLDVIRH-YAGRLPILGVCLGH-QAMAQA 88 (187)
T ss_pred CCEEEEcCCCCChH---HCCccHHHHHH-hcCCCCEEEECHHH-HHHHHH
Confidence 45677777754443 23445666766 45789999999995 678865
No 113
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=83.66 E-value=2.2 Score=40.22 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=31.6
Q ss_pred hccceeccCChhhHHhhh--cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 110 RRLENARLGGLGGAQAFA--KSEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~--~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
++|.+++||......++. +..-+-.-|+++.+++.+|.+||.| .-+|.+
T Consensus 290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG-~QmLG~ 340 (486)
T COG1492 290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGG-YQMLGR 340 (486)
T ss_pred CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcch-HHhhhh
Confidence 367789999864333321 2222333555666679999999999 566874
No 114
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=83.11 E-value=1.2 Score=36.54 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=29.9
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+|.+++-||..++. ++.....+++. .+.+.++.+||-|. .+|+.+
T Consensus 44 ~~~iilsgGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~-Qlia~a 88 (193)
T PRK08857 44 PTHLVISPGPCTPN---EAGISLQAIEH-FAGKLPILGVCLGH-QAIAQV 88 (193)
T ss_pred CCEEEEeCCCCChH---HCcchHHHHHH-hcCCCCEEEEcHHH-HHHHHH
Confidence 45566666643333 23344667765 46799999999995 668865
No 115
>PLN02347 GMP synthetase
Probab=82.29 E-value=2.3 Score=40.89 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=29.5
Q ss_pred ccceeccCChhhHHhhhcCHHHH-HHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLV-NMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~-~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.||++||..... ....+.+. .+++.+.+.+.+|.+||-|. -+|+.+
T Consensus 54 ~dgIILsGGP~sv~-~~~~p~~~~~i~~~~~~~~iPILGIClG~-QlLa~a 102 (536)
T PLN02347 54 PRVVILSGGPHSVH-VEGAPTVPEGFFDYCRERGVPVLGICYGM-QLIVQK 102 (536)
T ss_pred CCEEEECCCCCccc-ccCCchhhHHHHHHHHhcCCcEEEECHHH-HHHHHH
Confidence 56699999853222 11222222 23333445789999999995 678865
No 116
>PRK05637 anthranilate synthase component II; Provisional
Probab=81.93 E-value=3.1 Score=34.80 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=29.1
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.||+-||-+++.+ .....++++... .+++|.+||-|. -+|+.+
T Consensus 45 ~~~iIlsgGPg~~~d---~~~~~~li~~~~-~~~PiLGIClG~-Qlla~a 89 (208)
T PRK05637 45 PDLICLSPGPGHPRD---AGNMMALIDRTL-GQIPLLGICLGF-QALLEH 89 (208)
T ss_pred CCEEEEeCCCCCHHH---hhHHHHHHHHHh-CCCCEEEEcHHH-HHHHHH
Confidence 455777666543432 233456665543 579999999995 668865
No 117
>PLN02327 CTP synthase
Probab=81.67 E-value=1.9 Score=41.37 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=32.3
Q ss_pred hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
+...|.|++|||.+. . ..+..+..++.+..+++++.+||-|. -+++
T Consensus 360 L~~~DGIvvpGGfG~-~---~~~G~i~ai~~are~~iP~LGIClGm-Ql~v 405 (557)
T PLN02327 360 LKGADGILVPGGFGD-R---GVEGKILAAKYARENKVPYLGICLGM-QIAV 405 (557)
T ss_pred hccCCEEEeCCCCCC-c---ccccHHHHHHHHHHcCCCEEEEcHHH-HHHH
Confidence 334677999999742 2 22344667777778999999999995 4344
No 118
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=81.13 E-value=1.9 Score=35.24 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=30.2
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+|.||+-||.+++. ++.....+++. .++++++.+||-|. -+|+.+
T Consensus 44 ~~~iilsgGP~~~~---~~~~~~~~i~~-~~~~~PiLGIC~G~-Qlla~~ 88 (191)
T PRK06774 44 PSHLVISPGPCTPN---EAGISLAVIRH-FADKLPILGVCLGH-QALGQA 88 (191)
T ss_pred CCeEEEcCCCCChH---hCCCchHHHHH-hcCCCCEEEECHHH-HHHHHH
Confidence 45677777754343 23335566665 46789999999995 678876
No 119
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=78.87 E-value=2.3 Score=35.22 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=29.7
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.||+-||-+++.+ .......++++ +.++++.+||-|. .+|+.+
T Consensus 44 ~d~iIlsgGP~~p~~---~~~~~~~i~~~-~~~~PvLGIClG~-Qlla~~ 88 (195)
T PRK07649 44 PDFLMISPGPCSPNE---AGISMEVIRYF-AGKIPIFGVCLGH-QSIAQV 88 (195)
T ss_pred CCEEEECCCCCChHh---CCCchHHHHHh-cCCCCEEEEcHHH-HHHHHH
Confidence 466777777544432 22345566544 4789999999995 678865
No 120
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=77.04 E-value=5.6 Score=36.96 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=32.2
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+|-||+-||-+++. ..+...+.+++.. .++++.+||-|- -+|+.+
T Consensus 282 pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~iPIlGICLGh-QlLa~A 326 (415)
T PLN02771 282 PDGVLFSNGPGDPS---AVPYAVETVKELL-GKVPVFGICMGH-QLLGQA 326 (415)
T ss_pred CCEEEEcCCCCChh---HhhHHHHHHHHHH-hCCCEEEEcHHH-HHHHHh
Confidence 56688888743332 3356677777766 479999999995 678865
No 121
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=76.14 E-value=2.5 Score=42.09 Aligned_cols=45 Identities=9% Similarity=0.000 Sum_probs=32.8
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.|||.||.+.+. +....++|++..+.++++.+||-|. .+|+++
T Consensus 560 ~DgLILsgGPGsp~----d~~~~~~I~~~~~~~iPvLGICLG~-QlLa~a 604 (717)
T TIGR01815 560 PDLVVLSPGPGRPA----DFDVAGTIDAALARGLPVFGVCLGL-QGMVEA 604 (717)
T ss_pred CCEEEEcCCCCCch----hcccHHHHHHHHHCCCCEEEECHHH-HHHhhh
Confidence 45577756643332 3355788888889999999999995 678876
No 122
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=76.03 E-value=4.3 Score=38.37 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=31.3
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP 153 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~ 153 (232)
.|.++||||++ . +.-+--+..++-+.+++.|..+||-|.
T Consensus 344 ~dgIlVPGGFG-~---RG~eGkI~Ai~yAREn~iP~lGIClGm 382 (533)
T COG0504 344 VDGILVPGGFG-Y---RGVEGKIAAIRYARENNIPFLGICLGM 382 (533)
T ss_pred CCEEEeCCCCC-c---CchHHHHHHHHHHHhcCCCEEEEchhH
Confidence 56799999985 3 344666777888888999999999995
No 123
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=74.43 E-value=3.1 Score=39.80 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=31.3
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
.|.|++|||.+. . ..+..+..++.+.+++.|+.+||-|. -+++
T Consensus 344 ~dGIiLpGG~G~-~---~~~g~i~ai~~a~e~~iP~LGIClG~-Qll~ 386 (525)
T TIGR00337 344 VDGILVPGGFGE-R---GVEGKILAIKYARENNIPFLGICLGM-QLAV 386 (525)
T ss_pred CCEEEeCCCCCC-h---hhcChHHHHHHHHHcCCCEEEEcHHH-HHHH
Confidence 577999999742 2 23445567777778999999999995 4454
No 124
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=74.01 E-value=7.5 Score=36.45 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=34.3
Q ss_pred hHHHhhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831 104 EFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE 158 (232)
Q Consensus 104 ~~~~~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA 158 (232)
.++-....|-++||||++ .+ --+-.+..++-+.+++.+..+||-|. . +|
T Consensus 357 aW~~l~~adGilvPGGFG-~R---GveG~i~Aak~ARen~iP~LGiCLGm-Q-~A 405 (585)
T KOG2387|consen 357 AWQKLKSADGILVPGGFG-DR---GVEGKILAAKWARENKIPFLGICLGM-Q-LA 405 (585)
T ss_pred HHHHhccCCeEEeCCccc-cc---chhHHHHHHHHHHhcCCCeEeeehhh-h-HH
Confidence 444444567799999985 22 33455556666678899999999994 4 55
No 125
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=72.39 E-value=10 Score=34.46 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=40.9
Q ss_pred chhHHHhh--hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 102 SREFEKAA--RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 102 ~~~~~~~~--~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+.+++++- .+|-||+.-|-+++. .-+..++.||+.....+|+.+||-| -.+||.|
T Consensus 210 ~t~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iPifGICLG-HQllalA 266 (368)
T COG0505 210 DTSAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIPIFGICLG-HQLLALA 266 (368)
T ss_pred CCCHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCCeEEEcHH-HHHHHHh
Confidence 33566652 467799977754442 3467889999999888899999999 5778854
No 126
>PLN02335 anthranilate synthase
Probab=68.77 E-value=5.3 Score=33.74 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=28.5
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.|||-||.+.+.+ .....+++++ .....++.+||-|. -+|+.+
T Consensus 63 ~d~iVisgGPg~p~d---~~~~~~~~~~-~~~~~PiLGIClG~-QlLa~a 107 (222)
T PLN02335 63 PRGVLISPGPGTPQD---SGISLQTVLE-LGPLVPLFGVCMGL-QCIGEA 107 (222)
T ss_pred CCEEEEcCCCCChhh---ccchHHHHHH-hCCCCCEEEecHHH-HHHHHH
Confidence 455777777543432 1234556654 34579999999995 668854
No 127
>PRK00074 guaA GMP synthase; Reviewed
Probab=67.85 E-value=3.8 Score=39.07 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=28.8
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
.|.+|+|||..+..+ ...+.+. +...+.+++|.+||.|. .+|+.+
T Consensus 47 ~dgIIlsGGp~sv~~-~~~p~~~---~~i~~~~~PvLGIC~G~-QlLa~~ 91 (511)
T PRK00074 47 PKGIILSGGPASVYE-EGAPRAD---PEIFELGVPVLGICYGM-QLMAHQ 91 (511)
T ss_pred CCEEEECCCCccccc-CCCcccc---HHHHhCCCCEEEECHHH-HHHHHH
Confidence 367999999642221 1122332 34456799999999995 668764
No 128
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=67.54 E-value=10 Score=34.48 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=33.5
Q ss_pred hccceeccCCh--hhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhH
Q 026831 110 RRLENARLGGL--GGAQAFAKSEKLVNMLKKQKESNRPYGAICASPA 154 (232)
Q Consensus 110 ~~d~livpGg~--~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~ 154 (232)
..+-||+||-. +..-+.....-+.+-||+....|+++.+||-|..
T Consensus 39 ~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQ 85 (541)
T KOG0623|consen 39 NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQ 85 (541)
T ss_pred cCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHH
Confidence 34558999842 1122345677888999999999999999999953
No 129
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=64.48 E-value=8.4 Score=32.82 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 130 EKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 130 ~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
....+-|+.+.++|+++.+||.|. -+|.+
T Consensus 74 ~~k~~~l~~~i~~g~p~laiCgg~-QlLG~ 102 (250)
T COG3442 74 LTKKEGLKDAIENGKPVLAICGGY-QLLGQ 102 (250)
T ss_pred ccccHHHHHHHhcCCcEEEEccch-hhccc
Confidence 445577899999999999999995 66883
No 130
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=64.36 E-value=7.2 Score=33.13 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=30.8
Q ss_pred cceeccCChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhH
Q 026831 112 LENARLGGLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPA 154 (232)
Q Consensus 112 d~livpGg~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~ 154 (232)
..|++|||.. .. -..-++..-+-|..+.++|....+||.|+.
T Consensus 51 ~lLV~pGGaD-lpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~Y 93 (253)
T COG4285 51 LLLVFPGGAD-LPYVQVLQGLGTARIKNYVKEGGNFLGICAGGY 93 (253)
T ss_pred EEEEecCCCC-chHHHHhcchhhhhHHHHHhcCCeEEEEecccc
Confidence 3489999973 32 122356667778888889999999999963
No 131
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=62.96 E-value=6.4 Score=37.76 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=30.9
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+|.||+.||.+.+.+ +....++++.+ ..+.+|.+||-|. .+|+.+
T Consensus 45 ~d~vIlsgGP~~p~~---~~~~~~li~~~-~~~~PvLGIClG~-QlLa~a 89 (534)
T PRK14607 45 PSHIVISPGPGRPEE---AGISVEVIRHF-SGKVPILGVCLGH-QAIGYA 89 (534)
T ss_pred CCEEEECCCCCChhh---CCccHHHHHHh-hcCCCEEEEcHHH-HHHHHH
Confidence 466888887544432 33446677764 5789999999995 668865
No 132
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=62.00 E-value=13 Score=32.06 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=35.0
Q ss_pred hhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhH
Q 026831 108 AARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPA 154 (232)
Q Consensus 108 ~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~ 154 (232)
+...|.|++-||... .-.......+...|++.+++|.++++...|++
T Consensus 80 l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 80 LSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 445677999999631 11123566788899999999999999999963
No 133
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=57.36 E-value=11 Score=37.82 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=28.2
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhC----CCcEEEEcchhHHhhhhc
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKES----NRPYGAICASPALVLEPH 160 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~----g~~v~aic~G~~~lLA~a 160 (232)
..|.|||.||-+.+. ++.-..++++..+. +.+|.+||-|. -+|+.+
T Consensus 53 ~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~-QlLa~a 102 (742)
T TIGR01823 53 LFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGF-QSLCLA 102 (742)
T ss_pred CCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhh-HHHHhh
Confidence 356678877743322 22334445554443 59999999995 668755
No 134
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=56.47 E-value=16 Score=37.49 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=37.9
Q ss_pred chhHHHhhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 102 SREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 102 ~~~~~~~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+++++.. +.|-||+-.|.+++. .-+.+..-+++....+++|.+||.| -.+||.+
T Consensus 203 ~~~i~~~-~yDGlflSNGPGdPe---~~~~~v~~vr~lL~~~~PvfGIClG-HQllA~A 256 (1435)
T KOG0370|consen 203 DYPIAKE-EYDGLFLSNGPGDPE---LCPLLVQNVRELLESNVPVFGICLG-HQLLALA 256 (1435)
T ss_pred Ccccccc-ccceEEEeCCCCCch---hhHHHHHHHHHHHhCCCCeEEEehh-hHHHHHh
Confidence 3444443 567799988865443 2356667777777778999999999 5778864
No 135
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=53.79 E-value=20 Score=30.42 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=32.4
Q ss_pred hccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831 110 RRLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASP 153 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~ 153 (232)
+.|.|+|-||. ...+ .....+.+.||+..++|.+.++...|+
T Consensus 84 ~~d~IyVgGGN--TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA 128 (224)
T COG3340 84 KADIIYVGGGN--TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGA 128 (224)
T ss_pred hccEEEECCch--HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCc
Confidence 35667777775 3333 245678899999999999999999995
No 136
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=51.76 E-value=24 Score=29.77 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=63.5
Q ss_pred HhhhccceeccCChhhHHhhhcC---HHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-CCC-----CC-----CeeecC-
Q 026831 107 KAARRLENARLGGLGGAQAFAKS---EKLVNMLKKQKESNRPYGAICASPALVLEPH-GLL-----KG-----KKATAF- 171 (232)
Q Consensus 107 ~~~~~d~livpGg~~~~~~~~~~---~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-GLL-----~g-----~~~T~h- 171 (232)
+.+..+.++|.|+..+. ..+. -.+..++++..-..+.|.+||-|= -++|++ |-= .| ..+|.-
T Consensus 56 Dl~ky~gfvIsGS~~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGH-Qiiara~Gg~Vgra~KG~~~~lg~itivk 132 (245)
T KOG3179|consen 56 DLEKYDGFVISGSKHDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGH-QIIARAKGGKVGRAPKGPDLGLGSITIVK 132 (245)
T ss_pred hhhhhceEEEeCCcccc--cccchHHHHHHHHHHHHHhhccceEEEeccH-HHHHHhhCCccccCCCCCcccccceEEEE
Confidence 34445668888875322 2222 367788888888889999999995 668765 311 11 111110
Q ss_pred --ccchhhhc---c-----------------C--------ccCCCcEEEcCCEEEcCC-hhhHHHHHHHHHHHhcCH
Q 026831 172 --PAMCNKLS---D-----------------Q--------SEIENRVVVDGNLITSRG-PGTSMEFALAIVEKFFGR 217 (232)
Q Consensus 172 --~~~~~~~~---~-----------------~--------~~~d~~~v~Dg~~iTa~g-~~a~~d~~l~lI~~~~G~ 217 (232)
-.-...|- + . ...-+.+....+++|=.| +-=.-|....+|.+..+.
T Consensus 133 ~~~~~~~yFG~~~~~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~~~l~fQGHPEyn~eil~~ivdrv~~~ 209 (245)
T KOG3179|consen 133 DAEKPEKYFGEIPKSLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIEDHLLCFQGHPEYNKEILFEIVDRVLGT 209 (245)
T ss_pred ecccchhhcccchhhhhHHhhcccceecCCchhhhhccccccceEEEEecceEEEecCCchhhHHHHHHHHHHHhcc
Confidence 00111111 0 0 123356777888898887 444567888888888873
No 137
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=50.99 E-value=19 Score=34.53 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=27.0
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
++.||+-||-+.+.+....+ ++.+..+.++||.+||-|. -+|+.+
T Consensus 49 ~~~IIlSpGPg~p~d~~~~~----~i~~~~~~~iPILGIClG~-QlLa~a 93 (531)
T PRK09522 49 NPVLMLSPGPGVPSEAGCMP----ELLTRLRGKLPIIGICLGH-QAIVEA 93 (531)
T ss_pred cCEEEEcCCCCChhhCCCCH----HHHHHHhcCCCEEEEcHHH-HHHHHh
Confidence 34577766654343322222 3333344689999999995 668865
No 138
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=49.32 E-value=44 Score=27.74 Aligned_cols=65 Identities=9% Similarity=0.125 Sum_probs=42.2
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc---------CCCCCCeeecCccchhhhcc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH---------GLLKGKKATAFPAMCNKLSD 180 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a---------GLL~g~~~T~h~~~~~~~~~ 180 (232)
+|.|+|-.|-+.+. +.....+.|+++ ....++.+||-|= -.++++ -...||....+......|+.
T Consensus 46 pd~iviSPGPG~P~---d~G~~~~~i~~~-~~~~PiLGVCLGH-Qai~~~fGg~V~~a~~~~HGK~s~i~h~g~~iF~g 119 (191)
T COG0512 46 PDAIVISPGPGTPK---DAGISLELIRRF-AGRIPILGVCLGH-QAIAEAFGGKVVRAKEPMHGKTSIITHDGSGLFAG 119 (191)
T ss_pred CCEEEEcCCCCChH---HcchHHHHHHHh-cCCCCEEEECccH-HHHHHHhCCEEEecCCCcCCeeeeeecCCcccccC
Confidence 56666644432232 345688888888 6679999999994 667753 27888887655544444443
No 139
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=44.87 E-value=28 Score=30.95 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=31.6
Q ss_pred hHHHhh--hccceeccCChhhHHhhhc------CHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831 104 EFEKAA--RRLENARLGGLGGAQAFAK------SEKLVNMLKKQKESNRPYGAICASPALVLEP 159 (232)
Q Consensus 104 ~~~~~~--~~d~livpGg~~~~~~~~~------~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~ 159 (232)
+|+++. ..|.+||-|+....-..-+ -.++++|++ ++++.+.+||-|. .+++.
T Consensus 91 ~~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGa-Qa~a~ 150 (302)
T PRK05368 91 TFEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAA-QAALY 150 (302)
T ss_pred CHHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHH-HHHHH
Confidence 576663 3566899887422001111 235566665 4589999999995 55553
No 140
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=39.08 E-value=42 Score=24.85 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=29.0
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP 153 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~ 153 (232)
+.|.+|+.+-.+ .++++.++++.+.++|.++.+++...
T Consensus 47 ~~d~vi~iS~sG------~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 47 PGDVVIAISNSG------ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCEEEEEeCCC------CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345566665432 57899999999999999999999853
No 141
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=35.31 E-value=24 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=30.9
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhH
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPA 154 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~ 154 (232)
+.|+++|=|+.. .++....++++++.++.+.|.|+++-++
T Consensus 45 ~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGtCA~ 84 (131)
T PF01058_consen 45 EADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGTCAS 84 (131)
T ss_dssp TTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHHHHH
T ss_pred CceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCCccc
Confidence 456678887752 1346788999999999999999988753
No 142
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=33.78 E-value=23 Score=28.10 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=32.8
Q ss_pred ccceeccCChhhHHhh-hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC
Q 026831 111 RLENARLGGLGGAQAF-AKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG 161 (232)
Q Consensus 111 ~d~livpGg~~~~~~~-~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG 161 (232)
.|.|++-||.. +... ...+++.+.|.+...++ +.++|-=. ++.++|
T Consensus 81 ~D~vVlmGGLA-MP~~~v~~e~v~~li~ki~~~~--iiGiCFms--~F~kag 127 (147)
T PF09897_consen 81 PDVVVLMGGLA-MPKSGVTPEDVNELIKKISPKK--IIGICFMS--MFEKAG 127 (147)
T ss_dssp EEEEEEEGGGG-STTTS--HHHHHHHHHHHEEEE--EEEEEETT--HHHHTT
T ss_pred CCEEEEEcccc-cCCCCCCHHHHHHHHHHhCcCC--EEEEehHH--HHHHcC
Confidence 67899999974 4333 34567888888877554 99999875 368887
No 143
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.90 E-value=63 Score=23.79 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=27.7
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcch
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICAS 152 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G 152 (232)
+.|.+|+..-.+ ..+++++.++.+.++|.++.+|+..
T Consensus 46 ~~d~~I~iS~sG------~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQSG------ETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCcEEEEEeCCc------CCHHHHHHHHHHHHcCCeEEEEECC
Confidence 345555555432 4678999999999999999999875
No 144
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=29.01 E-value=1.3e+02 Score=25.13 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=34.4
Q ss_pred HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeee
Q 026831 123 AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT 169 (232)
Q Consensus 123 ~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T 169 (232)
++++.-.+.+..||-.....|+..-=.-.|| .||+.||++-
T Consensus 97 M~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp------~GLl~gKKv~ 137 (202)
T COG1182 97 MYNFNIPAQLKAYIDHIAVAGKTFKYTENGP------VGLLTGKKVL 137 (202)
T ss_pred ccccCCCHHHHHHHHHHhcCCceEEeccCCc------ccccCCceEE
Confidence 6667778999999999999999999777785 5788888864
No 145
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.57 E-value=92 Score=20.99 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHhCCCcEEEEc
Q 026831 129 SEKLVNMLKKQKESNRPYGAIC 150 (232)
Q Consensus 129 ~~~l~~~Lr~~~~~g~~v~aic 150 (232)
.+++.+.+++..++|.++.+++
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 5788999999999999999987
No 146
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=26.33 E-value=68 Score=33.07 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=26.6
Q ss_pred ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831 111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH 160 (232)
Q Consensus 111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a 160 (232)
+|.|||-+|-+.+.....-....+.|++. .+.+|.+||-|- -.|+.+
T Consensus 132 ~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGh-Q~i~~~ 178 (918)
T PLN02889 132 FDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGH-QALGYV 178 (918)
T ss_pred CCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHH-HHHHHh
Confidence 45577766643232111111234555543 479999999995 567754
No 147
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.74 E-value=1.8e+02 Score=25.88 Aligned_cols=76 Identities=7% Similarity=0.026 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEEcCCEEEcCChhhHHHHHH
Q 026831 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFAL 208 (232)
Q Consensus 129 ~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg~~iTa~g~~a~~d~~l 208 (232)
.+++.+.++...+++.++.-++.|+-+++.+.|+++|.-+... . |. .+..+++.++++++....+++.
T Consensus 42 ~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~-~----~~-------~i~~~~~~v~a~AG~~~~~l~~ 109 (302)
T PRK14650 42 IKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTG-H----LN-------KIEIHDNQIVAECGTNFEDLCK 109 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEEC-C----cC-------cEEEeCCEEEEEeCCcHHHHHH
Confidence 3577788887788899999999998876667776776544321 0 11 1123456688888888899998
Q ss_pred HHHHHhcC
Q 026831 209 AIVEKFFG 216 (232)
Q Consensus 209 ~lI~~~~G 216 (232)
+.+++-++
T Consensus 110 ~~~~~gl~ 117 (302)
T PRK14650 110 FALQNELS 117 (302)
T ss_pred HHHHcCCc
Confidence 88876543
No 148
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.24 E-value=97 Score=24.19 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=28.6
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcch
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICAS 152 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G 152 (232)
+.|.+|+....+ .++.+++.++.+.++|.++.+|+..
T Consensus 79 ~~D~~i~iS~sG------~t~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 79 KGDVLLGISTSG------NSKNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred CCCEEEEEcCCC------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456666665532 4689999999999999999999863
No 149
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.66 E-value=86 Score=24.01 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=24.2
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEE
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAI 149 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~ai 149 (232)
+.|+||+....+ +++.+++.++...++|..+.++
T Consensus 103 ~gDvli~iS~SG------~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 103 PGDVLIVISNSG------NSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp TT-EEEEEESSS-------SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEECCCC------CCHHHHHHHHHHHHCCCEEEEE
Confidence 456666665543 4689999999999999998886
No 150
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.00 E-value=1e+02 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=27.5
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcch
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICAS 152 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G 152 (232)
+.|.+|+....+ +++++.+.++.+.++|.++.+|+..
T Consensus 47 ~~dl~I~iS~SG------~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 47 EKSVVILASHSG------NTKETVAAAKFAKEKGATVIGLTDD 83 (120)
T ss_pred CCcEEEEEeCCC------CChHHHHHHHHHHHcCCeEEEEECC
Confidence 345555555432 4678999999999999999999864
No 151
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.83 E-value=1.1e+02 Score=24.20 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=28.0
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcch
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICAS 152 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G 152 (232)
+.|.+|+....+ ..+++++.++.+.++|.++.+|+.-
T Consensus 72 ~~Dv~I~iS~sG------~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 72 KGDLLIAISGSG------ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred CCCEEEEEeCCC------CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 445556555432 4679999999999999999999873
No 152
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.34 E-value=1.2e+02 Score=24.81 Aligned_cols=37 Identities=5% Similarity=0.057 Sum_probs=28.4
Q ss_pred hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcch
Q 026831 110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICAS 152 (232)
Q Consensus 110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G 152 (232)
+.|.+|+....+ +++.++..++.+.++|.++.+|+.-
T Consensus 111 ~~Dv~I~iS~SG------~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 111 EGDVLLGISTSG------NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCEEEEEeCCC------CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345566655432 4689999999999999999999864
No 153
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.30 E-value=82 Score=24.69 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=34.2
Q ss_pred hHHHhhhccceeccCChhhHHhh-hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC
Q 026831 104 EFEKAARRLENARLGGLGGAQAF-AKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG 161 (232)
Q Consensus 104 ~~~~~~~~d~livpGg~~~~~~~-~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG 161 (232)
.+++....|++++.||.. +... ...++..+++.+.- ++.+.++|-=. +..++|
T Consensus 79 e~e~~n~aDvvVLlGGLa-MP~~gv~~d~~kel~ee~~--~kkliGvCfm~--mF~rag 132 (154)
T COG4090 79 EREELNSADVVVLLGGLA-MPKIGVTPDDAKELLEELG--NKKLIGVCFMN--MFERAG 132 (154)
T ss_pred CccccccccEEEEEcccc-cCcCCCCHHHHHHHHHhcC--CCceEEeeHHH--HHHHcC
Confidence 344444567899999973 4333 23456667776443 56899999874 367777
Done!