Your job contains 1 sequence.
>026832
MPSSSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLD
AKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFM
DDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY
NEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQDEENLDDY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026832
(232 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2154433 - symbol:HMGB6 "high-mobility group bo... 582 1.6e-56 1
TAIR|locus:2128003 - symbol:HMGB5 "high mobility group B5... 238 4.4e-20 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 200 7.3e-20 2
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 235 9.2e-20 1
TAIR|locus:2053893 - symbol:HMGB4 "high mobility group B4... 234 1.2e-19 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 199 3.1e-19 2
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 202 1.7e-18 2
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 197 5.5e-18 2
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 211 3.2e-17 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 211 3.2e-17 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 206 1.1e-16 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 183 1.2e-16 2
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 179 1.6e-16 2
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 204 1.8e-16 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 204 1.8e-16 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 203 2.3e-16 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 203 2.3e-16 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 203 2.3e-16 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 203 2.3e-16 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 178 2.5e-16 2
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 178 2.5e-16 2
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 202 2.9e-16 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 202 2.9e-16 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 202 2.9e-16 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 202 2.9e-16 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 202 2.9e-16 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 177 3.2e-16 2
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 201 3.7e-16 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 201 3.7e-16 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 201 3.7e-16 1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot... 200 4.7e-16 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 200 4.7e-16 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 200 4.7e-16 1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 200 4.7e-16 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 200 4.7e-16 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 173 5.2e-16 2
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 199 6.0e-16 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 198 7.7e-16 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 196 1.3e-15 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 196 1.3e-15 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 196 1.3e-15 1
UNIPROTKB|F1M607 - symbol:F1M607 "Uncharacterized protein... 159 1.7e-15 2
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 194 2.0e-15 1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist... 194 2.0e-15 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 192 3.3e-15 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 192 3.3e-15 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 191 4.2e-15 1
RGD|1594733 - symbol:LOC690521 "similar to High mobility ... 167 4.5e-15 2
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 187 1.0e-14 2
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 187 1.0e-14 2
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 187 1.1e-14 1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1... 185 1.8e-14 1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g... 184 2.3e-14 1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 182 3.2e-14 2
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 182 3.8e-14 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 181 4.9e-14 1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 180 6.2e-14 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 180 6.2e-14 1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 179 7.9e-14 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 179 7.9e-14 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 178 1.0e-13 1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 178 1.0e-13 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 177 1.3e-13 1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR... 175 1.9e-13 2
RGD|621143 - symbol:Ssrp1 "structure specific recognition... 175 1.9e-13 2
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR... 175 1.9e-13 2
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni... 174 2.4e-13 2
RGD|1560584 - symbol:RGD1560584 "similar to High mobility... 174 2.7e-13 1
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"... 170 3.0e-13 2
UNIPROTKB|P23497 - symbol:SP100 "Nuclear autoantigen Sp-1... 185 3.5e-13 1
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"... 171 5.1e-13 2
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"... 171 5.1e-13 2
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot... 171 5.6e-13 1
UNIPROTKB|F1M1H9 - symbol:F1M1H9 "Uncharacterized protein... 171 5.6e-13 1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 169 8.3e-13 2
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G... 157 1.9e-12 2
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 163 3.9e-12 1
FB|FBgn0010278 - symbol:Ssrp "Structure specific recognit... 173 5.0e-12 1
WB|WBGene00001973 - symbol:hmg-3 species:6239 "Caenorhabd... 172 6.0e-12 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 166 1.2e-11 1
ZFIN|ZDB-GENE-041008-209 - symbol:ssrp1b "structure speci... 167 2.1e-11 1
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd... 165 3.4e-11 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 154 3.5e-11 1
MGI|MGI:1916567 - symbol:Hmgb4 "high-mobility group box 4... 151 7.4e-11 1
UNIPROTKB|Q8WW32 - symbol:HMGB4 "High mobility group prot... 149 1.2e-10 1
UNIPROTKB|Q32L34 - symbol:HMGB4 "High mobility group prot... 148 1.5e-10 1
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi... 157 2.5e-10 1
RGD|2319002 - symbol:LOC100365478 "high-mobility group bo... 144 4.1e-10 1
TAIR|locus:505006631 - symbol:AT5G23405 "AT5G23405" speci... 143 5.2e-10 1
RGD|1583212 - symbol:LOC685091 "similar to High mobility ... 146 5.6e-10 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 142 6.6e-10 1
FB|FBgn0010228 - symbol:HmgZ "HMG protein Z" species:7227... 137 2.2e-09 1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili... 135 3.6e-09 1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein... 135 3.6e-09 1
UNIPROTKB|F1LZ54 - symbol:F1LZ54 "Uncharacterized protein... 133 5.9e-09 1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot... 132 7.7e-09 1
SGD|S000002160 - symbol:NHP10 "Protein related to mammali... 140 9.7e-09 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 131 1.0e-08 1
WB|WBGene00001975 - symbol:hmg-5 species:6239 "Caenorhabd... 140 1.0e-08 1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil... 130 1.3e-08 1
WARNING: Descriptions of 144 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2154433 [details] [associations]
symbol:HMGB6 "high-mobility group box 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
Length = 241
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 129/239 (53%), Positives = 159/239 (66%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
S+ SNAPK RKRV+A+++S +S TL R +DGSAFA CE CNK+V VALISMH+CSLDAKI
Sbjct: 5 STTSNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKI 64
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD------SDSNKPKRPPTAFF 117
++NLEAQVVE AE KKKPAE+KK TS P+ KRL+K + S SNKPKRP TAFF
Sbjct: 65 RVNLEAQVVETQAEA-KKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFF 123
Query: 118 LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177
+FM DFRK +K H S AK GEKWK++T+EEKK YLDKAAELKA+Y+K++E N
Sbjct: 124 IFMSDFRKTFKSEHNGSLA-KDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESN 182
Query: 178 GDYNEVED--KADNEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEEN--LDDY 232
E ED K ++V+D E E E +++EE LDDY
Sbjct: 183 DADEEEEDEEKQSDDVDDAEEKQVDDDDEVEEKEVENTDDDKKEAEGKEEEEEEILDDY 241
>TAIR|locus:2128003 [details] [associations]
symbol:HMGB5 "high mobility group B5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
Uniprot:O49597
Length = 125
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 46/119 (38%), Positives = 74/119 (62%)
Query: 79 NKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
N+ + R + R ++ KK D N+PK+PP+ FF+F+DDFRKE+ A+PD+K V
Sbjct: 4 NQTEVESRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVG 63
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG-NGDY-NEVEDKADNEVEDKA 195
V + AG+KWK MT+EE+ P++ K+ K +Y+ M+ N + N + D+E ++KA
Sbjct: 64 NVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTGDDEKQEKA 122
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 200 (75.5 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W N ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 116 (45.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
Score = 50 (22.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 157 KPYLDKAAELKADYSKAM-EGNGDYNEVEDKADNEVEDKAE 196
KP K +KA+ SK E D + ED+ + E E++ E
Sbjct: 167 KPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEEEEE 207
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 54/130 (41%), Positives = 76/130 (58%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
E K + KKP R K K D NKPKRP +AFF+FM+DFR+ +K+ +P +K
Sbjct: 9 ETRSSKLSVTKKPAKGAGRGKAAAK---DPNKPKRPASAFFVFMEDFRETFKKENPKNKS 65
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY-------SKAMEGNGDYNEVEDKADN 189
V V K AG+KWK+++D EK PY+ KA + K +Y +K +E +E DK+ +
Sbjct: 66 VATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVS 125
Query: 190 EV--EDKAEN 197
EV ED AE+
Sbjct: 126 EVNDEDDAED 135
>TAIR|locus:2053893 [details] [associations]
symbol:HMGB4 "high mobility group B4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
process" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
Length = 138
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 52/121 (42%), Positives = 72/121 (59%)
Query: 82 KPAERK-KPTSTEPRAKRL-----RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
K E K + TST+ R K +K D N+PKRPP+AFF+F++DFRKE+ A+P++K
Sbjct: 2 KGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNK 61
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
V V K AG +WK MTDE+K PY+ KA K +Y K ++ YN N ED +
Sbjct: 62 SVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQ---QYNLKLASGTNREEDDS 118
Query: 196 E 196
+
Sbjct: 119 D 119
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 199 (75.1 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 50/130 (38%), Positives = 68/130 (52%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY++K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDSEKQPYINK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
Score = 104 (41.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
Score = 45 (20.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 217 VAEKEVQQDEENLDD 231
VA K+V++D+E+ DD
Sbjct: 175 VARKKVEEDDEDEDD 189
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 202 (76.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 51/130 (39%), Positives = 69/130 (53%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K + E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY+ K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLSDSEKQPYMTK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
Score = 105 (42.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
Score = 35 (17.4 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 217 VAEKEVQQDEENLDD 231
VA K+V+++EE ++
Sbjct: 175 VARKKVEEEEEEEEE 189
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 197 (74.4 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 50/130 (38%), Positives = 68/130 (52%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K + E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDNEKQPYVTK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
Score = 105 (42.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
Score = 35 (17.4 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 217 VAEKEVQQDEENLDD 231
VA K+V+++EE ++
Sbjct: 175 VARKKVEEEEEEEEE 189
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 67/210 (31%), Positives = 98/210 (46%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K + E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKL 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ E++ P+ + +KK D N PKRPP+AFFLF +FR + K HP + VA
Sbjct: 70 R-YEKEMKNYVPPKGET-KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + +V+ A +V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVD--AGKKVVAKAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E +++E++ DD
Sbjct: 185 KEEEEDEDEDEEDEEDEEEEEEEEEDDDDD 214
Score = 117 (46.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
K Y K M+ N V K + + + K N
Sbjct: 65 KADKLRYEKEMK-----NYVPPKGETKKKFKDPN 93
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 67/210 (31%), Positives = 98/210 (46%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K + E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKL 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ E++ P+ + +KK D N PKRPP+AFFLF +FR + K HP + VA
Sbjct: 70 R-YEKEMKNYVPPKGET-KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + +V+ A +V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVD--AGKKVVAKAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E +++E++ DD
Sbjct: 185 KEEEEDEDEDEEDEEDEEEEEEEEEDDDDD 214
Score = 117 (46.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
K Y K M+ N V K + + + K N
Sbjct: 65 KADKLRYEKEMK-----NYVPPKGETKKKFKDPN 93
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 68/210 (32%), Positives = 97/210 (46%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+++K
Sbjct: 10 RGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKVDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAVDDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
++E +++EE+ DD
Sbjct: 185 KEEEEDEEDEEDEEEEEDEEDEEEEEDDDD 214
Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+ + HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KVDKARYEREMK 76
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 183 (69.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 52/151 (34%), Positives = 75/151 (49%)
Query: 30 RGRDGS-AF--ARCEECNKNV-PVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C E +KN P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W + ++K+PY KAA+LK +Y K
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEEYEK 157
Score = 130 (50.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
Score = 36 (17.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 182 EVEDKADNEVEDKAE 196
E ED D E ED+ E
Sbjct: 194 EEEDDEDEEEEDEDE 208
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 179 (68.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 52/151 (34%), Positives = 73/151 (48%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W + ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Score = 132 (51.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
Score = 39 (18.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 176 GNGDYNEVEDKADNEVEDKAEN 197
G+ NE ED+ + E E++ E+
Sbjct: 180 GSKKKNEPEDEEEEEEEEEDED 201
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 69/210 (32%), Positives = 95/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E + +EE+ DD
Sbjct: 185 KEEEDDEEDEEDEEEEEEEEDEDEEEDDDD 214
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 60/170 (35%), Positives = 83/170 (48%)
Query: 41 EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+++K + ER+ P+
Sbjct: 24 EEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKAR-YEREMKNYIPPKG 82
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
++ +K+ D N PKRPP+AFF+F +FR + KE P + VAK GE W ++ EEK
Sbjct: 83 EK-KKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEK 140
Query: 157 KPYLDKAAELKADY--------SKAMEGNGDYNEVE--DKADNEVEDKAE 196
+PY KAA+LK Y SK G G DKA++E ED E
Sbjct: 141 QPYEKKAAKLKEKYEKDIAAYRSKGKVGGGAAKAPSKPDKANDEDEDDDE 190
Score = 107 (42.7 bits), Expect = 0.00040, P = 0.00040
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP++ + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 64 KLDKARYEREMK 75
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 68/210 (32%), Positives = 96/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
++E +++EE+ DD
Sbjct: 185 KEEEEDEEDEEDEEEEEDEEDEEEEEDDDD 214
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 68/210 (32%), Positives = 96/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
++E +++EE+ DD
Sbjct: 185 KEEEEDEEDEEDEEEEEDEEDEEEEEDDDD 214
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 69/210 (32%), Positives = 94/210 (44%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E + +EE DD
Sbjct: 185 KEEEDDEEDEEDEEEEEEEEDEDEEEEDDD 214
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 51/130 (39%), Positives = 69/130 (53%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLSDSEKQPYINK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 178 (67.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 52/151 (34%), Positives = 73/151 (48%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W + ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Score = 131 (51.2 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
Score = 38 (18.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 175 EGNGDYNEVEDKADNEVEDKAE 196
E + E ED D E ED+ E
Sbjct: 188 EDEEEEEEEEDDEDEEEEDEDE 209
Score = 37 (18.1 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 176 GNGDYNEVEDKADNEVEDKAEN 197
G+ NE ED+ + E E+ E+
Sbjct: 180 GSKKKNEPEDEEEEEEEEDDED 201
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 178 (67.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 52/151 (34%), Positives = 73/151 (48%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W + ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Score = 131 (51.2 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
Score = 38 (18.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 175 EGNGDYNEVEDKADNEVEDKAE 196
E + E ED D E ED+ E
Sbjct: 188 EDEEEEEEEEDDEDEEEEDEDE 209
Score = 37 (18.1 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 176 GNGDYNEVEDKADNEVEDKAEN 197
G+ NE ED+ + E E+ E+
Sbjct: 180 GSKKKNEPEDEEEEEEEEDDED 201
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W N ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWNNTASDDKQPYEKKAAKLKEKYEK 157
Score = 121 (47.7 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + V+K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W N ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWNNTASDDKQPYEKKAAKLKEKYEK 157
Score = 121 (47.7 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + V+K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 70/210 (33%), Positives = 95/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIPAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E +DEE+ DD
Sbjct: 185 KEEEDNEEDEEDEEEEEEEE-DEDEEDDDD 213
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 70/210 (33%), Positives = 95/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIPAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E +DEE+ DD
Sbjct: 185 KEEEDNEEDEEDEEEEEEEE-DEDEEDDDD 213
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 51/130 (39%), Positives = 69/130 (53%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLSDSEKQPYINK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 177 (67.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 42/116 (36%), Positives = 59/116 (50%)
Query: 57 CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAF 116
CS K E E A+ +K + +R+ P+ + KK D N PKRPP+AF
Sbjct: 45 CSERWKTMSAKEKSKFEDLAKSDKAR-YDREMKNYVPPKGNKKGKK-KDPNAPKRPPSAF 102
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FLF + R + K HP + AK+ GE W + ++K+PY KAA+LK Y K
Sbjct: 103 FLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Score = 124 (48.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ + + F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K + + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGNKKGKKKDPN 93
Score = 38 (18.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 176 GNGDYNEVEDKADNEVED 193
G+ NE ED+ + E ED
Sbjct: 180 GSKKKNEPEDEEEEEEED 197
Score = 35 (17.4 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 182 EVEDKADNEVEDKAE 196
E ED D E ED+ E
Sbjct: 194 EEEDGEDEEEEDEDE 208
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 68/210 (32%), Positives = 95/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
++E + +EE+ DD
Sbjct: 185 KEEEEDEEDEEDEEEEEDEEDEDEEEDDDD 214
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 68/210 (32%), Positives = 95/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
++E + +EE+ DD
Sbjct: 185 KEEEEDEEDEEDEEEEEDEEDEDEEEDDDD 214
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 68/210 (32%), Positives = 95/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
++E +++EE+ DD
Sbjct: 185 KEEEEDEEDEEDEEEEEDEEDEEEEEDDDD 214
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W N ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 116 (45.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W N ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 116 (45.9 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 70/210 (33%), Positives = 96/210 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY KAA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEIWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E ++DEE+ DD
Sbjct: 185 KEEEDDEEDEEDEE---EEEEEEDEEDDDD 211
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W N ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 116 (45.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 55/157 (35%), Positives = 78/157 (49%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K + E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+AFFLF +FR + K +P + VAK+ GE W N++D EK+PY +K
Sbjct: 88 -KDPNAPKRPPSAFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDGEKQPYNNK 145
Query: 163 AAELKADYSKAM---EGNGDYNEVEDKADNEVEDKAE 196
AA+LK Y K + + G ++ + A K E
Sbjct: 146 AAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVE 182
Score = 104 (41.7 bits), Expect = 0.00093, P = 0.00093
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 173 (66.0 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 52/151 (34%), Positives = 73/151 (48%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W + ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Score = 131 (51.2 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
Score = 40 (19.1 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 176 GNGDYNEVEDKADNEVEDKAEN 197
G+ NE ED+ + E E++ E+
Sbjct: 180 GSKKKNEPEDEEEEEEEEEEED 201
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 58/175 (33%), Positives = 81/175 (46%)
Query: 57 CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAF 116
CS K E E A+ +K + ER+ T P+ + +KK D N PKRPP+AF
Sbjct: 10 CSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAF 67
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
FLF ++R + K HP + VAK+ GE W N ++K+PY KAA+LK Y K +
Sbjct: 68 FLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 126
Query: 177 NGDYNEVEDKADNEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
+ D A V KAE E+E + +EE+ DD
Sbjct: 127 YRAKGK-PDAAKKGVV-KAEKSKKKKEEEDDEEDEEDEEEEEEEEDEDEEEDDDD 179
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 57/162 (35%), Positives = 80/162 (49%)
Query: 41 EECNKN--VPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAK 97
EE KN VPV CS K + E ++ A+ +K + K P AK
Sbjct: 25 EEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDREMKDYG--P-AK 81
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
+KK D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+
Sbjct: 82 GGKKK-KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDGEKQ 139
Query: 158 PYLDKAAELKADYSKAM---EGNGDYNEVEDKADNEVEDKAE 196
PY +KAA+LK Y K + + G ++ + A K E
Sbjct: 140 PYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVE 181
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 50/130 (38%), Positives = 66/130 (50%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYITK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
Score = 104 (41.7 bits), Expect = 0.00079, P = 0.00079
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 50/130 (38%), Positives = 66/130 (50%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYITK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
Score = 104 (41.7 bits), Expect = 0.00071, P = 0.00071
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 50/130 (38%), Positives = 66/130 (50%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYITK 145
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 146 AAKLKEKYEK 155
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 159 (61.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 48/148 (32%), Positives = 71/148 (47%)
Query: 30 RGRDGS-AFARCEECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKKKPA 84
RG+ S F EE K P A ++ CS K E E A+ +
Sbjct: 10 RGKMSSYTFFGGEEHEKKHPDAFVNFLEFSKKCSERWKTMSAKEKGEFENMAKAKARH-- 67
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + ++K D + PKR P+AFFL ++R + K HP + VA++
Sbjct: 68 EREMKTYISPKGET-KEKVRDPSAPKRLPSAFFLLCSEYRPKIKGEHP-GLSIGDVARKL 125
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+P +KAA+LK Y K
Sbjct: 126 GEMWNNTAADDKQP-CEKAAKLKEKYEK 152
Score = 49 (22.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 157 KPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAE 196
KP K +KA+ SK + D + ED+ D E E++ E
Sbjct: 162 KPDAAKKGVVKAEKSKKKKKEED--DEEDEEDEEEEEEKE 199
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 50/130 (38%), Positives = 67/130 (51%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 49 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 105
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +K
Sbjct: 106 -KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDSEKQPYNNK 163
Query: 163 AAELKADYSK 172
AA+LK Y K
Sbjct: 164 AAKLKEKYEK 173
Score = 115 (45.5 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 93 EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNM 151
+P R+R D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M
Sbjct: 11 KPFVIRIRMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTM 70
Query: 152 TDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKAD 188
+ +EK + + A K Y + M+ G + K D
Sbjct: 71 SGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKD 107
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 69/210 (32%), Positives = 91/210 (43%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYI-PHKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXXX 201
K+ GE W N ++K+PY AA+LK Y K + + D A V KAE
Sbjct: 127 KKLGEMWTNTAADDKQPYGKMAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKKK 184
Query: 202 XXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
EKE + +EE DD
Sbjct: 185 KEEEDDEEDEEDEEEEEEKEDEDEEEEDDD 214
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 67/211 (31%), Positives = 94/211 (44%)
Query: 29 MRGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINK 80
+RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 9 LRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 68
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++ + K HP + V
Sbjct: 69 AR-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDV 125
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXX 200
AK+ GE W N ++K+P KAA+LK Y K + + D A V KAE
Sbjct: 126 AKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKK 183
Query: 201 XXXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E + +EE+ DD
Sbjct: 184 KKEEEDDEEDEEDEEEEEEEEDEDEEEDDDD 214
Score = 106 (42.4 bits), Expect = 0.00063, P = 0.00063
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D K + +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 67/211 (31%), Positives = 94/211 (44%)
Query: 29 MRGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINK 80
+RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 9 LRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 68
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++ + K HP + V
Sbjct: 69 AR-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDV 125
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXX 200
AK+ GE W N ++K+P KAA+LK Y K + + D A V KAE
Sbjct: 126 AKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKK 183
Query: 201 XXXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E + +EE+ DD
Sbjct: 184 KKEEEDDEEDEEDEEEEEEEEDEDEEEDDDD 214
Score = 106 (42.4 bits), Expect = 0.00063, P = 0.00063
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D K + +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/128 (38%), Positives = 65/128 (50%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ +K + K P AK +KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--P-AKGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ K
Sbjct: 88 -KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYITK 145
Query: 163 AAELKADY 170
AA+LK Y
Sbjct: 146 AAKLKEKY 153
Score = 104 (41.7 bits), Expect = 0.00018, P = 0.00018
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KPK +A+ F+ R+E+K+ +P+ +K+ E+WK M+ +EK + + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKAD 188
K Y + M+ G + K D
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 167 (63.8 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 53/151 (35%), Positives = 74/151 (49%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AF LF ++R + K HP + + V
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAF-LFCSEYRPKIKGEHP-ALSIGDVT 125
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W N ++K+P AA+LK Y K
Sbjct: 126 KKLGEVWTNTASDDKQPCEKMAAKLKEKYEK 156
Score = 114 (45.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
Score = 37 (18.1 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 219 EKEVQQDEENLDD 231
+KE + DEE+ DD
Sbjct: 183 KKEEEDDEEDEDD 195
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 187 (70.9 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 43/119 (36%), Positives = 76/119 (63%)
Query: 80 KKKPAERKKPTST-EPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV 137
+KKPA++ K +PR K++ KK D N PKRP +A+ L+++ R++ K HP +
Sbjct: 514 EKKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGIS-I 572
Query: 138 TGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAE 196
T ++K+AGE WK M+ E+K+ + KA + K DY KAM+ +Y+ V +K+++ ++++
Sbjct: 573 TDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMK---EYS-VGNKSESSKMERSK 627
Score = 35 (17.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 187 (70.9 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 43/119 (36%), Positives = 76/119 (63%)
Query: 80 KKKPAERKKPTST-EPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV 137
+KKPA++ K +PR K++ KK D N PKRP +A+ L+++ R++ K HP +
Sbjct: 514 EKKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGIS-I 572
Query: 138 TGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAE 196
T ++K+AGE WK M+ E+K+ + KA + K DY KAM+ +Y+ V +K+++ ++++
Sbjct: 573 TDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMK---EYS-VGNKSESSKMERSK 627
Score = 35 (17.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 67/211 (31%), Positives = 94/211 (44%)
Query: 29 MRGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINK 80
+RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 9 LRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 68
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+ ER+ T P+ + +KK D N PK PP+AFFLF ++R + K HP + V
Sbjct: 69 AR-YEREMKTYISPKGET-KKKFKDPNAPKTPPSAFFLFCSEYRPKIKGEHP-GLSIGDV 125
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENXXX 200
K+ GE W N ++K+PY AA+LK Y K + + D A V KAE
Sbjct: 126 VKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDIAAYRAKGK-PDAAKKGVV-KAEKSKK 183
Query: 201 XXXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E+E ++DEE+ DD
Sbjct: 184 KKEEEDDEEDEEDE----EEEEEEDEEDDDD 210
Score = 106 (42.4 bits), Expect = 0.00060, P = 0.00060
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D K + +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 62/181 (34%), Positives = 85/181 (46%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP AFFLF ++R + K HP + V
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIGDVV 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK---AMEGNGDYNEVED---KADNEVEDKA 195
K+ GE W N ++K+P KAA+LK Y K A G + V+ KA+ + K
Sbjct: 127 KKLGEMWNNTAVDDKQPCEKKAAKLKEKYEKDIAAYRAKGKPDAVKKGVVKAEKSKKKKE 186
Query: 196 E 196
E
Sbjct: 187 E 187
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ ++E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 51/164 (31%), Positives = 80/164 (48%)
Query: 41 EECNKNVPVALISMHSCSLDAKIKMN-LEAQVVEKPAEINKKKPAERKKPTSTEPRAKRL 99
EE NK P ++ S + + + K ++ K+ A + K+
Sbjct: 25 EEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQDKARYDQEMMHYNPGKKG 84
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK+ D N P+RPP+ FFLF + R K +P S G+ VAK+ G W N++D EK+P+
Sbjct: 85 RKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSEKQPF 143
Query: 160 LDKAAELKADYSKAM-----EGNGDYNEV--EDKADNEVEDKAE 196
L A +LK Y K M +G+G + E K D++ +D+ E
Sbjct: 144 LSNADKLKDKYQKDMAFYRKKGSGGSSSAKSEPKDDDDDDDEEE 187
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 182 (69.1 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 43/121 (35%), Positives = 70/121 (57%)
Query: 77 EINKKKPAERKKPTSTE-PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
+ +KKK A+R K + PR K KK D PKRP +A+ L+++ R++ K +P
Sbjct: 508 DTDKKKDAKRAKIVKQKKPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGIS 567
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
+T ++K+AGE WKNM+ ++K+ + +A E K DY KAM+ +YN ++ E K
Sbjct: 568 -ITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMK---EYNTSAPTEASKKEKKT 623
Query: 196 E 196
+
Sbjct: 624 K 624
Score = 35 (17.4 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAEINKKK 82
LI + S D + +N+ + VE+ E KK
Sbjct: 273 LILLFSKDEDMTLTLNMSEEEVERRFEGKLKK 304
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 60/186 (32%), Positives = 86/186 (46%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM-----EGNGDYNE------VEDKADNE 190
K+ GE W + ++K+PY KAA+LK Y K + +G G+ + K NE
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKGEAGKKGPGRPTGSKKKNE 186
Query: 191 VEDKAE 196
ED+ E
Sbjct: 187 PEDEEE 192
Score = 132 (51.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 55/177 (31%), Positives = 77/177 (43%)
Query: 55 HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPT 114
+ CS K E E A+ +K ER+ T P+ + +KK D N PKRPP+
Sbjct: 43 NKCSERWKTMSAKEKGKFEDMAKADKTH-YERQMKTYIPPKGET-KKKFKDPNAPKRPPS 100
Query: 115 AFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
AFFLF ++ + K HP + VAK+ GE W N ++K+P KAA+LK Y K
Sbjct: 101 AFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEK-- 157
Query: 175 EGNGDYNEVEDKADNEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
D + K E K E+E ++DEE+ DD
Sbjct: 158 ----DIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDEEDDDD 210
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 46/136 (33%), Positives = 69/136 (50%)
Query: 41 EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P + ++ CS K + E E+ A+ +K + +R+ P+
Sbjct: 25 EEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKAR-YDREMKNYVPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
++ KK D N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K
Sbjct: 84 EKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDK 141
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 142 QPYEQKAAKLKEKYEK 157
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +++ E+WK M+ +EK + + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K + + + K N
Sbjct: 65 KGDKARYDREMK-----NYVPPKGEKKGKKKDPN 93
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 41/102 (40%), Positives = 59/102 (57%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKRPP+ FFLF +F + K +P + VAK+ GE WKN+ D EK+PY+
Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIP-IGDVAKKLGEMWKNLNDSEKQPYIT 143
Query: 162 KAAELKADYSKAM-----EGNGDYNEVEDK-ADNEVEDKAEN 197
+AA+LK Y K + +G D + K A +VE++ E+
Sbjct: 144 QAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEEDED 185
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 52/151 (34%), Positives = 73/151 (48%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W + ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Score = 132 (51.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 52/151 (34%), Positives = 73/151 (48%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
K+ GE W + ++K+PY KAA+LK Y K
Sbjct: 127 KKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Score = 132 (51.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 46/136 (33%), Positives = 68/136 (50%)
Query: 41 EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P + ++ CS K + E E+ A+ +K + +R+ P+
Sbjct: 25 EEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKAR-YDREMKNYVPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
++ KK D N PKRPP+AFFLF + R + K HP + AK+ GE W ++K
Sbjct: 84 EKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDK 141
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 142 QPYEQKAAKLKEKYEK 157
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +++ E+WK M+ +EK + + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K + + + K N
Sbjct: 65 KGDKARYDREMK-----NYVPPKGEKKGKKKDPN 93
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/168 (30%), Positives = 78/168 (46%)
Query: 40 CEECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPR 95
C + +K P ++ CS K E ++ A+ +K + K +
Sbjct: 23 CRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAKADKVHYNQEMKDYGSAKG 82
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
K+ D N PKRPP+ FFLF +F E K +P + VAK+ GE W N++D +
Sbjct: 83 GKK------DPNAPKRPPSGFFLFFSEFCSEIKSTNPGIS-IGDVAKKLGEMWNNLSDSK 135
Query: 156 KKPYLDKAAELK------ADYSKAMEGN-GDYNEVEDKADNEVEDKAE 196
K+ Y++K A+LK ADY +G G V+ K + E EDK E
Sbjct: 136 KQLYVNKDAKLKKYEKDVADYKGEFDGTKGPAKVVQKKVEEE-EDKEE 182
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 42/116 (36%), Positives = 59/116 (50%)
Query: 57 CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAF 116
CS K E E A+ +K + +R+ P+ + KK D N PKRPP+AF
Sbjct: 34 CSERWKTMSAKEKSKFEDMAKSDKAR-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAF 91
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FLF + R + K HP + AK+ GE W + ++K+PY KAA+LK Y K
Sbjct: 92 FLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 146
Score = 105 (42.0 bits), Expect = 0.00061, P = 0.00061
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 124 RKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
R+E+K+ HPDS +K+ E+WK M+ +EK + D A KA Y + M+ N
Sbjct: 13 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMK-----NY 67
Query: 183 VEDKADNEVEDKAEN 197
V K D + + K N
Sbjct: 68 VPPKGDKKGKKKDPN 82
>UNIPROTKB|Q08945 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
Length = 709
Score = 175 (66.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 43/131 (32%), Positives = 72/131 (54%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLR----KKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E ++ ++KK + KK + R R + KK D N PKRP +A+ L+++ R++ K
Sbjct: 507 EGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIK 566
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM---EGNGDYNEVED 185
HP +T ++K+AGE WK M+ E+K+ + KA + + DY KAM EG + D
Sbjct: 567 SDHPGIS-ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRD 625
Query: 186 KADNEVEDKAE 196
K+ + + K +
Sbjct: 626 KSKKKKKVKVK 636
Score = 35 (17.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>RGD|621143 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 175 (66.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 43/126 (34%), Positives = 71/126 (56%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLR--KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
E K+K +R K K+ KK D N PKRP +A+ L+++ R++ K HP
Sbjct: 513 EEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME----GNGDYNEVEDKADNE 190
+T ++K+AGE WK M+ E+K+ + KA + + +Y KAM+ G GD ++ DK+ +
Sbjct: 573 S-ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK-RDKSKKK 630
Query: 191 VEDKAE 196
+ KA+
Sbjct: 631 KKVKAK 636
Score = 35 (17.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>UNIPROTKB|Q04931 [details] [associations]
symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 175 (66.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 43/126 (34%), Positives = 71/126 (56%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLR--KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
E K+K +R K K+ KK D N PKRP +A+ L+++ R++ K HP
Sbjct: 513 EEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME----GNGDYNEVEDKADNE 190
+T ++K+AGE WK M+ E+K+ + KA + + +Y KAM+ G GD ++ DK+ +
Sbjct: 573 S-ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK-RDKSKKK 630
Query: 191 VEDKAE 196
+ KA+
Sbjct: 631 KKVKAK 636
Score = 35 (17.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>MGI|MGI:107912 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
CleanEx:MM_SSRP1 Genevestigator:Q08943
GermOnline:ENSMUSG00000027067 Uniprot:Q08943
Length = 708
Score = 174 (66.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLR----KKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E ++ +KK + K+ + R R + KK D N PKRP +A+ L+++ R++ K
Sbjct: 507 EGDSDREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIK 566
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME----GNGDYNEVE 184
HP +T ++K+AGE WK M+ E+K+ + KA + + +Y KAM+ G GD ++
Sbjct: 567 SDHPGIS-ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK-R 624
Query: 185 DKADNEVEDKAE 196
DK+ + + KA+
Sbjct: 625 DKSKKKKKVKAK 636
Score = 35 (17.4 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 44/116 (37%), Positives = 61/116 (52%)
Query: 57 CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAF 116
CS K E E A+ +K + ER+ T P+ + +KK D N KRPP+AF
Sbjct: 45 CSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKGET-KKKFKDPNALKRPPSAF 102
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FLF ++R + K HP + VAK+ GE W N ++K+P KAA+LK Y K
Sbjct: 103 FLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKEKYEK 157
>UNIPROTKB|J9NYX4 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
Length = 551
Score = 170 (64.9 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 42/131 (32%), Positives = 72/131 (54%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLR----KKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E ++ ++KK + KK + R R + KK D N PKRP +A+ L+++ R++ K
Sbjct: 349 EGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIK 408
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM---EGNGDYNEVED 185
HP +T ++K+AGE WK M+ E+K+ + KA + + +Y KAM EG + D
Sbjct: 409 ADHPGIS-ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGESSKRD 467
Query: 186 KADNEVEDKAE 196
K+ + + K +
Sbjct: 468 KSKKKKKVKVK 478
Score = 35 (17.4 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 113 LILLFSKDEDISLTLNMNEEEVEKRFE 139
>UNIPROTKB|P23497 [details] [associations]
symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
[GO:0060333 "interferon-gamma-mediated signaling pathway"
evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
"response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IC] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
transduction by p53 class mediator resulting in transcription of
p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
interferon" evidence=IDA;IMP] [GO:0034341 "response to
interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=IC] [GO:0070087
"chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0043392
"negative regulation of DNA binding" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0051271 "negative regulation of cellular component movement"
evidence=IMP] [GO:0032897 "negative regulation of viral
transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
Ensembl:ENST00000340126 Ensembl:ENST00000409341
Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
Length = 879
Score = 185 (70.2 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 57/185 (30%), Positives = 81/185 (43%)
Query: 22 STSSATLMRGRDGSAFARCEECNKNVPVALIS----MHSCSLDAKIKMNLEAQVVEKPAE 77
ST ++ + + CEE K P A + + CS K E E A+
Sbjct: 680 STRKKRILESHNNTLVDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAK 739
Query: 78 INKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV 137
+K ER+ T P+ ++ +KK D N PKRPP AFFLF ++R + K HP +
Sbjct: 740 ADKAH-YEREMKTYIPPKGEK-KKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSI 796
Query: 138 TGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK---AMEGNGDYNEVED---KADNEV 191
V K+ W N +K+ Y KAA+LK Y K A G N + KA+
Sbjct: 797 DDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSK 856
Query: 192 EDKAE 196
+ K E
Sbjct: 857 KKKEE 861
>UNIPROTKB|F6QYV9 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
Uniprot:F6QYV9
Length = 709
Score = 171 (65.3 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLR----KKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E ++ +KK + KK + R R + KK D N PKRP +A+ L+++ R++ K
Sbjct: 507 EGDSDREEKKRKQLKKAKMAKDRKSRKKPLEVKKGKDPNAPKRPMSAYMLWLNASREKIK 566
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM---EGNGDYNEVED 185
HP VT ++K+AGE WK M+ E+K+ + KA + + +Y KAM EG + D
Sbjct: 567 SDHPGIS-VTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGESSKRD 625
Query: 186 KADNEVEDKAE 196
K+ + + K +
Sbjct: 626 KSKKKKKVKVK 636
Score = 35 (17.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEKVEKRFE 299
>UNIPROTKB|I3LLA8 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
Length = 709
Score = 171 (65.3 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 42/131 (32%), Positives = 72/131 (54%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLR----KKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E ++ ++KK + KK + R R + KK D N PKRP +A+ L+++ R++ K
Sbjct: 507 EGDSDRDEKKRKQLKKAKMAKDRKSRKKPTEVKKGKDPNAPKRPMSAYMLWLNASREKIK 566
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM---EGNGDYNEVED 185
HP +T ++K+AGE WK M+ E+K+ + KA + + +Y KAM EG + D
Sbjct: 567 SDHPGIS-ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGESSKRD 625
Query: 186 KADNEVEDKAE 196
K+ + + K +
Sbjct: 626 KSKKKKKVKVK 636
Score = 35 (17.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 50/138 (36%), Positives = 69/138 (50%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P A ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VA
Sbjct: 70 R-YEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVA 126
Query: 142 KEAGEKWKNMTDEEKKPY 159
K+ GE W N ++K+PY
Sbjct: 127 KKLGEMWNNTAADDKQPY 144
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 42/116 (36%), Positives = 60/116 (51%)
Query: 57 CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAF 116
CS K E E A+ +K + ER+ T P+ + +KK D + P+RPP AF
Sbjct: 46 CSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKGET-KKKFKDPDAPRRPPLAF 103
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FLF ++ + K HP + VAK+ GE W N ++K+P KAA+LK Y K
Sbjct: 104 FLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEK 158
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 169 (64.5 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 40/128 (31%), Positives = 71/128 (55%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLR----KKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E ++ ++KK + KK + R R + KK D N PKRP +A+ L+++ R++ K
Sbjct: 506 EGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIK 565
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKAD 188
HP +T ++K+AGE WK M+ E+K+ + KA + + +Y KAM+ +Y ++
Sbjct: 566 ADHPGIS-ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMK---EYEGGRGESS 621
Query: 189 NEVEDKAE 196
DK++
Sbjct: 622 KSYRDKSK 629
Score = 35 (17.4 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAE 77
LI + S D + +N+ + VEK E
Sbjct: 273 LILLFSKDEDISLTLNMNEEEVEKRFE 299
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 157 (60.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/102 (35%), Positives = 54/102 (52%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
KK + E K+ + ++ D NKPK+P +++FLF D RK+ E P + T V
Sbjct: 351 KKKEKTDNLIKKEKATKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNAT-V 409
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
KWK +++EEK+ Y KAA+L Y K +E YN+
Sbjct: 410 TALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEA---YNK 448
Score = 156 (60.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 36/101 (35%), Positives = 61/101 (60%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ KK+ D KPK P +AF ++ ++ R +E ++K V VAK GE+WKN++D++K
Sbjct: 243 KKKNKKEKDPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKK 299
Query: 157 KPYLDKAAELKADYSKAMEGNGDYNEV-EDKADNEVEDKAE 196
PY A + K Y +AME +Y E++A ++ +++ E
Sbjct: 300 APYEKVAKKNKETYLQAME---EYKRTKEEEALSQKKEEEE 337
Score = 39 (18.8 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 21/115 (18%), Positives = 47/115 (40%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDA 61
P+ N+ K K+ + + S ++G+ +F + L+ M +
Sbjct: 9 PTKKPRNSRKALKQKNELVETPPSPVSVKGKSAKSFEQ----------DLMEMQTMLEKM 58
Query: 62 KIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAF 116
KI+ + +++++ EI +KK E + + + + K + K K +P F
Sbjct: 59 KIEKDKTEELLKEKDEILRKKEEELETRDAEQEKLK-VELKKLQKMKEFKPNMTF 112
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 54/169 (31%), Positives = 78/169 (46%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N VPV CS K E ++ A+ K + K P A+ +KK
Sbjct: 31 NSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMAKAYKMHYDQEMKDYG--P-ARGGKKK 87
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D + PKR P+ LF +F + K HP + VAK+ GE W N++D EK+PY++K
Sbjct: 88 DPKA--PKRLPSGCLLFCSEFHPKIKSTHPGIS-IRDVAKKLGEMWNNLSDSEKQPYINK 144
Query: 163 AAELK------ADYSKA--MEGN-------GDYNEVEDKADNEVEDKAE 196
AA+LK AD+ +G G E EDK D E E++++
Sbjct: 145 AAKLKKYEKDAADHKSRGKFDGTKGPAKVAGKMVEEEDKEDEEEEEQSQ 193
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 173 (66.0 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 47/124 (37%), Positives = 67/124 (54%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHP 132
+K + ++KK + KK E R K+ KK DS KPKR TAF L+++D R+ K +P
Sbjct: 520 KKKEKKSEKKEKKEKKHKEKE-RTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENP 578
Query: 133 DSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN-EVEDKADNEV 191
K VT +AK+ GE WK + D+ K + D AA+ K Y M +Y E +DNE
Sbjct: 579 GIK-VTEIAKKGGEMWKELKDKSK--WEDAAAKDKQRYHDEMR---NYKPEAGGDSDNEK 632
Query: 192 EDKA 195
K+
Sbjct: 633 GGKS 636
>WB|WBGene00001973 [details] [associations]
symbol:hmg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
Length = 689
Score = 172 (65.6 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 40/108 (37%), Positives = 59/108 (54%)
Query: 68 EAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEY 127
E + K E +KK KK + +A + KK D N+PKR TA+ ++ + R
Sbjct: 520 EENIEPKKKESKEKKNKREKKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANRNSM 579
Query: 128 KEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
KE D + VAK+AG KWK+M+ ++KK + DKAA+ KA Y M+
Sbjct: 580 KE---DGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMK 624
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLRKKDS-DSNKPKRPPTAFFLFMDDFRKEYKEAH 131
++ ++ KKK T+ AK +K ++ D NKPK+P +++FLF D RK E H
Sbjct: 335 QEALQLLKKKEKTDNIIKKTKETAKNKKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEH 394
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184
P T V KW + +EEK+ Y KAAEL Y K +E +YN+ +
Sbjct: 395 PGINNST-VTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVE---EYNKTK 443
Score = 149 (57.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ KK D KPK+P +A+ ++ ++ R K ++K V VAK AGE+WKN+++E+K
Sbjct: 234 KKKAKKIKDPLKPKQPISAYLIYANERRAALKG---ENKSVIEVAKMAGEEWKNLSEEKK 290
Query: 157 KPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
PY A + K Y + MEG E E + + E++
Sbjct: 291 APYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEE 328
Score = 123 (48.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 34/131 (25%), Positives = 57/131 (43%)
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDF 123
K+ E + ++K E + + K+ +KK D + KRP T + L+ D
Sbjct: 84 KLKTELKKLQKMKEFKPNMTFAFSQSLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDN 143
Query: 124 RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183
E K+ +P++ + G KWK ++ EEKKPY +K K Y + + E
Sbjct: 144 WNEVKKQNPEAD-FKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREA 202
Query: 184 EDKADNEVEDK 194
D+E + K
Sbjct: 203 MKLLDDEQKQK 213
Score = 43 (20.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 51 LISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRK 101
L+ M + KI+ ++++ EI +KK E++K TE K+L+K
Sbjct: 47 LMEMQAMLEKMKIEKEKTEDLLKEKDEILRKKEVEQEK-LKTE--LKKLQK 94
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 167 (63.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 38/123 (30%), Positives = 68/123 (55%)
Query: 60 DAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLF 119
D+K + E+ E ++ ++KK + +K E + ++ KK DS PKRP +A+ L+
Sbjct: 495 DSKASAS-ESSAEEGDSDEDRKKKSAKKVKFVKERKPRKKEKKVKDSGAPKRPMSAYMLW 553
Query: 120 MDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179
++ R K +P +T ++K+AGE WK + ++K+ + KA E K +Y +AM +
Sbjct: 554 LNSSRDRIKSENPGIS-ITEISKKAGEMWKQLGKDKKEEWDGKAEEAKKEYDRAMR---E 609
Query: 180 YNE 182
Y E
Sbjct: 610 YRE 612
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 75 PAEINKKKPAE-RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD 133
P++ K +P E R+K E + + KKD D N PKR +A+ + R E KE D
Sbjct: 521 PSKRRKGEPKEKREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKE---D 577
Query: 134 SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
V VAK+ G KWK M+ ++KK + +KA E K+ Y K M+
Sbjct: 578 GDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMK 619
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 44/111 (39%), Positives = 59/111 (53%)
Query: 80 KKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVT 138
K P + K T R RKK D N PKR +A+ F +D R + +E +P S G
Sbjct: 3 KANPTRKTKAT----RETGGRKK-KDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQV 57
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYS--KAMEGNGDYNEVEDKA 187
G K GEKWK+++D+E+KPY DKAA K Y KA G+ E E+ +
Sbjct: 58 G--KMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYKAGEAEEDEESS 106
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR +++ D P++PP++F LF D K+ +PD V VAK AG+ W + EK
Sbjct: 81 KRRKRRKRDPKAPRKPPSSFLLFSRDHYAMLKQENPDWT-VVQVAKAAGKMWSTTDEAEK 139
Query: 157 KPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVE 192
KPY KAA ++A Y + E N+ + + N +E
Sbjct: 140 KPYEQKAALMRAKYFEEQEAYR--NQCQGRKGNFLE 173
Score = 103 (41.3 bits), Expect = 0.00081, P = 0.00081
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLD 161
+ D +PK +++ FM +FR ++KE P++ G +++ EKW++++ EK Y +
Sbjct: 3 EKDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY-E 61
Query: 162 KAAEL-KADYSKAM 174
AEL KA Y + M
Sbjct: 62 ALAELDKARYQQEM 75
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR +++ D +P+RPP++F LF D + K +P+ V VAK G+ W TD EK
Sbjct: 81 KRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWS-VVQVAKATGKMWSTATDLEK 139
Query: 157 KPYLDKAAELKADYSKAME 175
PY + A L+A Y + +E
Sbjct: 140 HPYEQRVALLRAKYFEELE 158
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
R K+ RK+D + P+RPP++F LF D + K +P S V VAK +G+ W TD
Sbjct: 81 RRKKRRKRDPHA--PRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDV 137
Query: 155 EKKPYLDKAAELKADYSKAM 174
+K+PY +AA L+A Y + +
Sbjct: 138 DKQPYEQRAALLRAKYREEL 157
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 157 (60.3 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 38/106 (35%), Positives = 61/106 (57%)
Query: 80 KKKPAERK-KPTSTEPRAKRLRK--KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
KKK E+K K E + ++ RK K D+ PKRP +A+ L+++ R+ K +P
Sbjct: 514 KKKKVEKKPKKVVKEKKERKPRKEKKVKDAAAPKRPMSAYMLWLNGNRERIKSENPGIS- 572
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
+T ++K+AGE WK + ++K+ + KA E K Y KAM+ +Y E
Sbjct: 573 ITEISKKAGEMWKQLGKDKKEEWDKKAEEAKRQYEKAMK---EYKE 615
>RGD|2319002 [details] [associations]
symbol:LOC100365478 "high-mobility group box 1-like"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
Length = 186
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 46/136 (33%), Positives = 63/136 (46%)
Query: 41 EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K ER+ T P+
Sbjct: 24 EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMAKADKAHH-EREMKTYILPKG 82
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +K+ D N KRPP+AF LF D R + K HP + VAK GE W + ++K
Sbjct: 83 ET-KKRFKDPNALKRPPSAF-LFCSDHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDK 139
Query: 157 KPYLDKAAELKADYSK 172
+P KA +LK Y K
Sbjct: 140 QPSEKKATKLKETYEK 155
>TAIR|locus:505006631 [details] [associations]
symbol:AT5G23405 "AT5G23405" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AB018110 EMBL:AY052244 EMBL:BT020349 IPI:IPI00546033
IPI:IPI00547115 RefSeq:NP_568430.2 RefSeq:NP_851063.1
UniGene:At.26423 ProteinModelPortal:Q941D1 SMR:Q941D1 IntAct:Q941D1
STRING:Q941D1 EnsemblPlants:AT5G23405.1 GeneID:832406
KEGG:ath:AT5G23405 TAIR:At5g23405 eggNOG:NOG291653
HOGENOM:HOG000242532 InParanoid:Q941D1 OMA:RMHICYA PhylomeDB:Q941D1
ProtClustDB:CLSN2680197 Genevestigator:Q941D1 Uniprot:Q941D1
Length = 149
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 36/102 (35%), Positives = 58/102 (56%)
Query: 92 TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
T+ +AK KK ++ K T F +FM+ FRK ++ + + G +K E WK+M
Sbjct: 49 TQTQAK---KKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEG-SKIGWEMWKSM 104
Query: 152 TDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVED 193
T++EKK YLDKAA+ + + +E D + +D DNEV++
Sbjct: 105 TEDEKKDYLDKAADEEDEDEDTVEEQAD--DSDDAEDNEVKE 144
Score = 108 (43.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 33 DGSAFARCEE--CNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPT 90
D S FARCE+ CNK +PV L+ MH C A L A+ + KKKP +KK T
Sbjct: 8 DSSIFARCEDVDCNKKIPVELVRMHICY--AMFHRTLAARGFGTQTQA-KKKPTNKKKST 64
Query: 91 ST 92
++
Sbjct: 65 TS 66
>RGD|1583212 [details] [associations]
symbol:LOC685091 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
Length = 203
Score = 146 (56.5 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 53/169 (31%), Positives = 77/169 (45%)
Query: 41 EECNKNVPVALISMHS----CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K ER+ T P+
Sbjct: 32 EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMAKADKAHH-EREMKTYILPKG 90
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +K+ D N KRPP+AF LF D R + K HP + VAK GE W + ++K
Sbjct: 91 ET-KKRFKDPNALKRPPSAF-LFCSDHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDK 147
Query: 157 KPYLDKAAELKADYSK---AMEGNGDYNEVE------DKADNEVEDKAE 196
+P KA +LK Y K A G + V+ +K++ + E+K E
Sbjct: 148 QPSEKKATKLKETYEKDIAAYRAKGKPDAVKKGVVKAEKSEKKKEEKDE 196
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 35/87 (40%), Positives = 47/87 (54%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKW 148
T EP+ + RKK D N PKR +A+ F ++ R + +PD + G G K+ GEKW
Sbjct: 3 TPREPKKRTTRKK-KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVG--KKLGEKW 59
Query: 149 KNMTDEEKKPYLDKAAELKADYSKAME 175
K +T EEK+PY KA K Y E
Sbjct: 60 KALTPEEKQPYEAKAQADKKRYESEKE 86
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
++PKRP +A+ L++++ R++ K+ +P SK VT +AK GE W+ + D K + KA ++
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD--KTEWEQKAIKM 60
Query: 167 KADYSKAM---EGNG 178
K +Y+KA+ E NG
Sbjct: 61 KEEYNKAVKEYEANG 75
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 37/131 (28%), Positives = 63/131 (48%)
Query: 68 EAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEY 127
E +V + P + KK+P KK + K+ +KK D N P+R + F F D R
Sbjct: 15 EKKVKKTPVKKPKKEPKVSKKG---KKEGKKTKKKPKDENAPRRYLSPFIFFSKDHRSVI 71
Query: 128 KEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDK 186
K +HP+ S G G G++W ++ E+KK Y AAE K + + + + + +
Sbjct: 72 KNSHPNCSFGEIGSL--LGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNYDEKLKTQSQ 129
Query: 187 ADNEVEDKAEN 197
A++ + E+
Sbjct: 130 AESSSDSSDES 140
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S+KPKRP +A+ L+++ R+ K +P K VT VAK GE W+ M D K + KAA+
Sbjct: 2 SDKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAK 58
Query: 166 LKADYSKAM---EGNG 178
K DY +A+ E NG
Sbjct: 59 AKDDYDRAVKEFEANG 74
>UNIPROTKB|F1LZ54 [details] [associations]
symbol:F1LZ54 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
Length = 160
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 41/135 (30%), Positives = 60/135 (44%)
Query: 41 EECNKNVPVALISMHSCSLDAKIKMN-LEAQVVEKPAEINKKKPA--ERKKPTSTEPRAK 97
EE K P + ++ S + + A+ K ++ K A ER+ T P+ +
Sbjct: 25 EEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAKADKAHYEREMKTYISPKGE 84
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
+KK D N KRP FLF ++ + K HP + V + GE W N+ E K+
Sbjct: 85 T-KKKFKDPNVHKRP-LLVFLFCSEYCPKIKGEHP-GLSIGDVVTKLGEMWNNIAMENKQ 141
Query: 158 PYLDKAAELKADYSK 172
PY KA LK Y K
Sbjct: 142 PYEKKATNLKEKYEK 156
Score = 103 (41.3 bits), Expect = 0.00039, P = 0.00039
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 115 AFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKA 173
++ F+ +++E+K+ HPDS + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 15 SYAFFVQAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAKADKAHYERE 74
Query: 174 ME 175
M+
Sbjct: 75 MK 76
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 132 (51.5 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KA Y + M+ N V K D + + K N
Sbjct: 65 KSDKARYDREMK-----NYVPPKGDKKGKKKDPN 93
Score = 127 (49.8 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 42/127 (33%), Positives = 58/127 (45%)
Query: 30 RGRDGS-AF--ARC-EECNKNVPVALISM----HSCSLDAKIKMNLEAQVVEKPAEINKK 81
RG+ S AF C EE K P + ++ CS K E E A+ +K
Sbjct: 10 RGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKA 69
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +R+ P+ + KK D N PKRPP+AFFLF + R + K HP + A
Sbjct: 70 R-YDREMKNYVPPKGDKKGKK-KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTA 126
Query: 142 KEAGEKW 148
K+ GE W
Sbjct: 127 KKLGEMW 133
>SGD|S000002160 [details] [associations]
symbol:NHP10 "Protein related to mammalian high mobility
group proteins" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0042766 "nucleosome mobilization"
evidence=IDA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045027 "DNA end binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 SGD:S000002160 Pfam:PF00505
GO:GO:0006355 EMBL:BK006938 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0031011 GO:GO:0006302 GO:GO:0042766 EMBL:Z48008 GO:GO:0000404
GO:GO:0045027 PIR:S50980 RefSeq:NP_010282.3 RefSeq:NP_010286.3
ProteinModelPortal:Q03435 SMR:Q03435 DIP:DIP-1387N IntAct:Q03435
MINT:MINT-388714 STRING:Q03435 PaxDb:Q03435 PeptideAtlas:Q03435
EnsemblFungi:YDL002C GeneID:851562 GeneID:851566 KEGG:sce:YDL002C
KEGG:sce:YDR003W CYGD:YDL002c HOGENOM:HOG000001026 KO:K11680
OMA:AYLLFCE OrthoDB:EOG4RV61X NextBio:968998 Genevestigator:Q03435
GermOnline:YDL002C Uniprot:Q03435
Length = 203
Score = 140 (54.3 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 41/139 (29%), Positives = 70/139 (50%)
Query: 67 LEAQVVEKPAEINKKKP----AERKKPTSTEP----RAKRLRKKDSDSNKPKRPPTAFFL 118
LE+++ P E+N + P A K+ T+P + KR + K+ D N PKRP A+ L
Sbjct: 45 LESRIELDP-ELNCEDPLPTLASFKQELLTKPFRKSKTKRHKVKERDPNMPKRPTNAYLL 103
Query: 119 FMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178
+ + ++ ++ G V ++ E WKN+ ++++KPY +E + Y ME
Sbjct: 104 YCEMNKERIRQ-----NGSLDVTRDLAEGWKNLNEQDRKPYYKLYSEDRERYQMEME--- 155
Query: 179 DYNEVEDKADNEVEDKAEN 197
YN+ D + +DK EN
Sbjct: 156 IYNKKISNIDAD-DDKEEN 173
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 131 (51.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/93 (38%), Positives = 50/93 (53%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT-G-VAK 142
E K+P EP+ + R+K D N PKR +A+ F ++ R + +PD VT G V +
Sbjct: 6 EAKQPK--EPKKRTTRRK-KDPNAPKRGLSAYMFFANENRDIVRSENPD---VTFGQVGR 59
Query: 143 EAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
GE+WK +T EEK+PY KA K Y E
Sbjct: 60 ILGERWKALTAEEKQPYESKAQADKKRYESEKE 92
>WB|WBGene00001975 [details] [associations]
symbol:hmg-5 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=IDA] [GO:0042162 "telomeric
DNA binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0000003 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:FO080446 GO:GO:0000784 GO:GO:0042162
Pfam:PF09011 eggNOG:NOG297801 KO:K11830
GeneTree:ENSGT00440000039001 PIR:T25760 RefSeq:NP_501245.1
ProteinModelPortal:Q94234 SMR:Q94234 STRING:Q94234 PaxDb:Q94234
EnsemblMetazoa:F45E4.9.1 EnsemblMetazoa:F45E4.9.2 GeneID:177543
KEGG:cel:CELE_F45E4.9 UCSC:F45E4.9 CTD:177543 WormBase:F45E4.9
HOGENOM:HOG000018012 InParanoid:Q94234 OMA:AMYIKEN NextBio:897284
Uniprot:Q94234
Length = 204
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 40/117 (34%), Positives = 64/117 (54%)
Query: 59 LDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFL 118
LD +K++ E Q +K + K+K AER ++ AK R+K S +P PP+A+ L
Sbjct: 88 LDDFMKLSTEEQ--KKLVDSAKEKKAER----ASRRHAKERREKRKQSGRPSVPPSAYAL 141
Query: 119 FMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
F+ +++ A +SK KEA +WK TD +KK Y D+A +LK +Y ++
Sbjct: 142 FI---KEKLSGAGMESKEKM---KEAVAQWKAFTDSQKKKYTDEAKKLKDEYHVVLQ 192
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 130 (50.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/101 (35%), Positives = 49/101 (48%)
Query: 88 KPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGE 146
K T E R +R KKD + PKR +A+ F + R E P+ SK V V K GE
Sbjct: 2 KNTGKEVRKRRKNKKDPHA--PKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGE 59
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
W + ++EK P+ KA E K Y K +Y ++ KA
Sbjct: 60 AWNKLGEKEKAPFEKKAQEDKLRYEKE---KAEYANMKMKA 97
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 130 (50.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/101 (35%), Positives = 49/101 (48%)
Query: 88 KPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGE 146
K T E R +R KKD + PKR +A+ F + R E P+ SK V V K GE
Sbjct: 2 KNTGKEVRKRRKNKKDPHA--PKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGE 59
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
W + ++EK P+ KA E K Y K +Y ++ KA
Sbjct: 60 AWNKLGEKEKAPFEKKAQEDKLRYEKE---KAEYANMKMKA 97
>POMBASE|SPAC4G9.11c [details] [associations]
symbol:cmb1 "cytosine-mismatch binding protein 1"
species:4896 "Schizosaccharomyces pombe" [GO:0003684 "damaged DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] InterPro:IPR009071 PomBase:SPAC4G9.11c GO:GO:0005739
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003684
GO:GO:0006281 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AJ002513 PIR:T38870
RefSeq:NP_593693.1 ProteinModelPortal:Q10241 STRING:Q10241
PRIDE:Q10241 EnsemblFungi:SPAC4G9.11c.1 GeneID:2543595
KEGG:spo:SPAC4G9.11c OrthoDB:EOG4S7P0N NextBio:20804602
Pfam:PF09011 Uniprot:Q10241
Length = 223
Score = 141 (54.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 60 DAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLF 119
DA+ K +E P EI+ + K+ ST R RLR D PK+P +AF LF
Sbjct: 102 DAEKKRFMETLRSFTPTEIDSENRRRSKEAHSTGSRYYRLRHPDV----PKKPSSAFILF 157
Query: 120 MDDFRKEYKEAH----PDS-KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+ R K P++ + + A + WK + +++KKP++DK+ LK Y K M
Sbjct: 158 YKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFIDKSKALKEQYDKFM 217
Query: 175 EGNG 178
+ G
Sbjct: 218 KEAG 221
>TAIR|locus:2153514 [details] [associations]
symbol:AT5G05330 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR009071
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AY954865 EMBL:DQ132719 IPI:IPI00542765 RefSeq:NP_196152.2
UniGene:At.54729 ProteinModelPortal:Q58FU4
EnsemblPlants:AT5G05330.1 GeneID:830415 KEGG:ath:AT5G05330
TAIR:At5g05330 HOGENOM:HOG000064710 InParanoid:Q58FU4 OMA:FNARAME
ProtClustDB:CLSN2699112 Genevestigator:Q58FU4 Uniprot:Q58FU4
Length = 220
Score = 95 (38.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 10 PKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSC 57
P+ RKRV A + R DGSAF +CEEC + +AL MH C
Sbjct: 37 PRTRKRVQA---------VRRAADGSAFKKCEECGVMIAIALYDMHEC 75
Score = 89 (36.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 112 PPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYS 171
P + F F+++FR+ Y D+ + WKNM+ E++KP+ +A E+ + +S
Sbjct: 107 PRSPFVFFLEEFRENYNGDLVDASRI------CFNVWKNMSAEDQKPFNARAMEVDSAHS 160
Query: 172 KAMEGNGDYNEVEDKADNEVEDK 194
+ + N + + KAD E + K
Sbjct: 161 RKL--NEEAKTIY-KADEEADSK 180
>POMBASE|SPBC28F2.11 [details] [associations]
symbol:SPBC28F2.11 "HMG box protein" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
apoptotic process" evidence=IGI] InterPro:IPR009071
PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
NextBio:20801465 Uniprot:Q9USU7
Length = 310
Score = 143 (55.4 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 41/142 (28%), Positives = 69/142 (48%)
Query: 60 DAKIKMNLEAQVVEKPAEINKKK------PAERKKPTSTEPRAKRL---RKKDSDSNKPK 110
+AK ++N+ + K A KK P E T + ++K D +PK
Sbjct: 59 NAKKEINMAIESPSKKATSPKKATPAAVAPVEATSAVDTSEAVASMTPNKRKARDPAQPK 118
Query: 111 RPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
RPP+A+ LF + R E KE+ + S V V K EKW +++++++K Y ++A++L+
Sbjct: 119 RPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLREA 178
Query: 170 YSKAMEGNGDYNEVEDKADNEV 191
Y + M E AD+ V
Sbjct: 179 YEEEMAAYNASKENASVADSRV 200
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 131 (51.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKRP +A+FL++ D R ++ + +P + ++K AGEKW+N+ + K+ Y+ + +L +
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRPAE-ISKIAGEKWQNLEADIKEKYISERKKLYS 101
Query: 169 DYSKA 173
+Y KA
Sbjct: 102 EYQKA 106
Score = 106 (42.4 bits), Expect = 0.00035, P = 0.00035
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
A+I +K +ERKK S +AK K+ + PK+P F + ++ R + HPD K
Sbjct: 86 ADIKEKYISERKKLYSEYQKAK---KEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPD-K 141
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYS 171
+ K G+KW+++ K Y+ + + +Y+
Sbjct: 142 SQLDLMKIIGDKWQSLDQSIKDKYIQEYKKAIQEYN 177
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 124 (48.7 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 94 PRA-KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNM 151
PRA K RKKD N PKR +AF F + R++ K +PD+ G G G++WK +
Sbjct: 2 PRAAKSSRKKDP--NTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSL--LGKRWKEL 57
Query: 152 TDEEKKPYLDKAAELKADYSK 172
T E++PY +KA + K Y +
Sbjct: 58 TSTEREPYEEKARQDKERYER 78
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 141 (54.7 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 35/102 (34%), Positives = 54/102 (52%)
Query: 76 AEINKKKPAERKKPTSTEPRAK-RLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD 133
AE ++KP E ++ T AK R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 AENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPE 128
Query: 134 SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ + G +W + EEK+ YLD+A K Y + +E
Sbjct: 129 VP-FPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELE 169
>UNIPROTKB|Q5ZKF4 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
Uniprot:Q5ZKF4
Length = 348
Score = 141 (54.7 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 35/102 (34%), Positives = 54/102 (52%)
Query: 76 AEINKKKPAERKKPTSTEPRAK-RLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD 133
AE ++KP E ++ T AK R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 AENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPE 128
Query: 134 SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ + G +W + EEK+ YLD+A K Y + +E
Sbjct: 129 VP-FPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELE 169
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 123 (48.4 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 38/104 (36%), Positives = 55/104 (52%)
Query: 84 AERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT-G-VA 141
A KK S +P +R +K D PKR +A+ F ++ R +E +P GVT G V
Sbjct: 4 AATKK--SAKPEKRRAKK---DPMAPKRGLSAYMFFANEQRDNVREENP---GVTFGQVG 55
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSK---AMEGNGDYNE 182
K GE+WK ++D+++ PY KAA K Y A + GD +E
Sbjct: 56 KILGERWKALSDKQRAPYDAKAAADKKRYEDEKAAYQAGGDEDE 99
>FB|FBgn0011764 [details] [associations]
symbol:Dsp1 "Dorsal switch protein 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0032502 "developmental process" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
remodeling" evidence=IMP] [GO:0007379 "segment specification"
evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
"negative regulation of antimicrobial humoral response"
evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
Length = 393
Score = 141 (54.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 53/177 (29%), Positives = 80/177 (45%)
Query: 8 NAPKPRKRVDAQSASTSSATLMRGRDGSAFAR-C-EECNKNVP--VALISMHS--CSLDA 61
N+ P RV A + T + F + C EE K P + + S C+
Sbjct: 165 NSASPMSRVKADAKPRGRMTAY-----AYFVQTCREEHKKKHPDETVIFAEFSRKCAERW 219
Query: 62 KIKMNLEAQVVEKPAEINKKK-PAERKK---PTSTEPRAKRLRKKDSDSNKPKRPPTAFF 117
K ++ E + + AE +K++ AE + P + RK+ D N PKR +AFF
Sbjct: 220 KTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFF 279
Query: 118 LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
F +D R + K +P+ GV +AKE G KW ++ E K+ Y A KA Y + M
Sbjct: 280 WFCNDERNKVKALNPEF-GVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREM 335
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDE 154
A + + +D+ KP+ TA+ F+ R+E+K+ HPD + +++ E+WK M D+
Sbjct: 167 ASPMSRVKADA-KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDK 225
Query: 155 EKKPYLDKAAELKADYSKAME 175
EKK + + A + K Y M+
Sbjct: 226 EKKRFHEMAEKDKQRYEAEMQ 246
>WB|WBGene00001972 [details] [associations]
symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IGI] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
Length = 235
Score = 136 (52.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 46/133 (34%), Positives = 64/133 (48%)
Query: 44 NKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKK-PAERKKPTSTEPRAKRLRKK 102
N+NV V IS CS K ++ E + + A+ + ++ AE A R RK+
Sbjct: 69 NENVQVTEISK-KCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKR 127
Query: 103 -DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
D + PKR +AFF + D R E + HPD K V VA+E G+ WK + E K Y
Sbjct: 128 AKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWK-VGQVAQELGKMWKLVPQETKDMYEQ 186
Query: 162 KAAELKADYSKAM 174
KA K Y+ M
Sbjct: 187 KAQADKDRYADEM 199
>UNIPROTKB|F1LZG8 [details] [associations]
symbol:F1LZG8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00560402
Ensembl:ENSRNOT00000043102 Uniprot:F1LZG8
Length = 203
Score = 132 (51.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 48/164 (29%), Positives = 70/164 (42%)
Query: 81 KKPAERKKPTSTEPRAK------------RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
KK +ER K ST+ + K +KK D + P+ PP+AF LF + + K
Sbjct: 43 KKCSERWKTMSTKEKGKFENIGKADKAHYETKKKFKDPSAPE-PPSAF-LFCSRYHSKTK 100
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK-----AMEGNGDYNEV 183
HPD + VAK+ G W N +++K+P KA +LK + K A E N EV
Sbjct: 101 GEHPDLS-IGDVAKKLGLMWNNTAEDDKQPIKKKAFKLKEKFEKDIAYRAKENNAGKREV 159
Query: 184 EDKADNEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEE 227
KA + K E E+E +++EE
Sbjct: 160 V-KAKRSKKKKVEEDDEEDEEDEKKEVEEEKEEEEEEEEEEEEE 202
>SGD|S000001515 [details] [associations]
symbol:IXR1 "Protein that binds DNA intrastrand cross-links
formed by cisplatin" species:4932 "Saccharomyces cerevisiae"
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0071456 "cellular response to hypoxia" evidence=IGI;IMP]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR009071 SGD:S000001515 Pfam:PF00505
GO:GO:0005634 GO:GO:0003684 GO:GO:0043565 GO:GO:0006281
GO:GO:0071456 GO:GO:0006351 EMBL:BK006944 GO:GO:0000122
eggNOG:COG5648 GeneTree:ENSGT00680000100562 OrthoDB:EOG483HF0
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:X71622 EMBL:L16900 EMBL:Z28032 PIR:S37849 RefSeq:NP_012893.3
RefSeq:NP_012897.3 ProteinModelPortal:P33417 SMR:P33417
IntAct:P33417 STRING:P33417 PaxDb:P33417 PeptideAtlas:P33417
EnsemblFungi:YKL032C GeneID:853836 GeneID:853840 KEGG:sce:YKL028W
KEGG:sce:YKL032C CYGD:YKL032c KO:K03136 NextBio:975043
Genevestigator:P33417 GermOnline:YKL032C Uniprot:P33417
Length = 597
Score = 141 (54.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 341 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 397
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 398 RWKELTDDQKKPFYE---EFRTNWEK 420
>FB|FBgn0038979 [details] [associations]
symbol:CG7046 species:7227 "Drosophila melanogaster"
[GO:0000785 "chromatin" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 FlyBase:FBgn0038979 EMBL:AY070828
HSSP:Q05783 ProteinModelPortal:Q8T957 SMR:Q8T957 STRING:Q8T957
PRIDE:Q8T957 eggNOG:NOG253857 InParanoid:Q8T957 OrthoDB:EOG4MCVGR
ArrayExpress:Q8T957 Bgee:Q8T957 Uniprot:Q8T957
Length = 138
Score = 119 (46.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 108 KPKRPPTAFFLFMDDF-RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
+PK+P +AF L+M+ RK + HPD V V+ + GE W+ M DE K + + A++
Sbjct: 7 RPKKPMSAFMLWMNSTGRKNIRAEHPDFS-VQEVSVKGGEMWRAMADEHKIVWQESASKA 65
Query: 167 KADYSKAME 175
A+Y + +E
Sbjct: 66 MAEYKEKLE 74
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 119 (46.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEE 155
K+ +KK D PKR +A+ ++ D R E + P+ +K V V K GE W ++ +
Sbjct: 12 KQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQ 71
Query: 156 KKPYLDKAAEL-KADYSKAME 175
K PY +K A+L K YSK +E
Sbjct: 72 KAPY-EKKAQLDKVRYSKEIE 91
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 119 (46.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEE 155
K+ +KK D PKR +A+ ++ D R E + P+ +K V V K GE W ++ +
Sbjct: 12 KQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQ 71
Query: 156 KKPYLDKAAEL-KADYSKAME 175
K PY +K A+L K YSK +E
Sbjct: 72 KAPY-EKKAQLDKVRYSKEIE 91
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 118 (46.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+K + ++P K ++K N PK P T + F+++ R++ + HPD +
Sbjct: 42 EKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEI 100
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
K G +W + EK+ YLD+A K Y K +
Sbjct: 101 TKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKEL 134
>UNIPROTKB|F1M4J9 [details] [associations]
symbol:F1M4J9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00562835
Ensembl:ENSRNOT00000051890 Uniprot:F1M4J9
Length = 196
Score = 129 (50.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 44/133 (33%), Positives = 62/133 (46%)
Query: 81 KKPAERKKPTSTEPRAK------------RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
KK +ER K ST+ + K +KK D + P+ PP+AF LF + + K
Sbjct: 43 KKCSERWKTMSTKEKGKFENIGKADKAHYETKKKFKDPSAPE-PPSAF-LFCSRYHSKTK 100
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK-----AMEGNGDYNEV 183
HPD + VAK+ G W N +++K+P KA +LK + K A E N EV
Sbjct: 101 GEHPDLS-IGDVAKKLGLMWNNTAEDDKQPIKKKAFKLKEKFEKDIAYRAKENNAGKREV 159
Query: 184 EDKADNEVEDKAE 196
KA + K E
Sbjct: 160 V-KAKRSKKKKVE 171
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 139 (54.0 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 37/101 (36%), Positives = 52/101 (51%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
+K A +K P +RK + E +KR + KK D N PKR + F F R K+ H
Sbjct: 525 KKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEH 584
Query: 132 PDSKGVT-G-VAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
P G+ G V K G+KW+ M+ ++K+PY KA K Y
Sbjct: 585 P---GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRY 622
>FB|FBgn0038978 [details] [associations]
symbol:CG7045 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
Length = 126
Score = 117 (46.2 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 108 KPKRPPTAFFLFMDDF-RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
+PK+P +AF L+M+ RK K HPD V V+ + GE W+ M DE+K + + A
Sbjct: 7 RPKKPMSAFMLWMNSTGRKHIKAEHPDFS-VQEVSVKGGEMWRAMADEDKIVWQESATTA 65
Query: 167 KADYSKAME 175
A+Y + ++
Sbjct: 66 MAEYKEKLK 74
>UNIPROTKB|F1LY72 [details] [associations]
symbol:F1LY72 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00568202 Ensembl:ENSRNOT00000048758 Uniprot:F1LY72
Length = 203
Score = 129 (50.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 44/133 (33%), Positives = 62/133 (46%)
Query: 81 KKPAERKKPTSTEPRAK------------RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
KK +ER K ST+ + K +KK D + P+ PP+AF LF + + K
Sbjct: 43 KKCSERWKTMSTKEKGKFENIGKADKAHYETKKKFKDPSAPE-PPSAF-LFCSRYHSKTK 100
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK-----AMEGNGDYNEV 183
HPD + VAK+ G W N +++K+P KA +LK + K A E N EV
Sbjct: 101 GEHPDLS-IGDVAKKLGLMWNNTAEDDKQPIKKKAFKLKEKFEKDIAYRAKENNAGKREV 159
Query: 184 EDKADNEVEDKAE 196
KA + K E
Sbjct: 160 V-KAKRSKKKKVE 171
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 116 (45.9 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 116 (45.9 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>UNIPROTKB|F1SFJ1 [details] [associations]
symbol:SOX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
"positive regulation of cartilage development" evidence=IEA]
[GO:0060164 "regulation of timing of neuron differentiation"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045165 "cell fate commitment" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=IEA] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0045892 GO:GO:0071560 GO:GO:0001701
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0032332
GO:GO:0051216 GO:GO:0048709 GO:GO:0045165 GO:GO:0061036
GO:GO:0060164 GO:GO:0021953 GeneTree:ENSGT00690000101789
GO:GO:2000741 EMBL:CU695217 Ensembl:ENSSSCT00000000610 OMA:GEEPHII
Uniprot:F1SFJ1
Length = 316
Score = 130 (50.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 53 SMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKP--K 110
++ S + +K N E + + N ++ S E R R + SN+P K
Sbjct: 57 TLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVS-ESRIYR-ESRGRGSNEPHIK 114
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RP AF ++ D R++ +A PD + ++K G +WK MT+ EK+PY ++ A L +
Sbjct: 115 RPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 173
Query: 171 SKAMEGNGDY 180
+E DY
Sbjct: 174 ---LEKYPDY 180
Score = 35 (17.4 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 179 DYNEVEDKADNEVEDKAEN 197
+Y+E ED D + +EN
Sbjct: 291 EYDEEEDDPDVDYGSDSEN 309
>ZFIN|ZDB-GENE-081120-6 [details] [associations]
symbol:sox6 "SRY-box containing gene 6" species:7955
"Danio rerio" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
ZFIN:ZDB-GENE-081120-6 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
PANTHER:PTHR10270:SF89 EMBL:BX537340 EMBL:BX936464 EMBL:BX936427
IPI:IPI01024072 Ensembl:ENSDART00000150068 ArrayExpress:F8W2H3
Bgee:F8W2H3 Uniprot:F8W2H3
Length = 785
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/105 (30%), Positives = 59/105 (56%)
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKP--KRPPTAFFLFMD 121
K+ + ++ + ++ + + E T TE R R + +SN+P KRP AF ++
Sbjct: 531 KLGEDGKIGHRVIDLTRPEDFEGGAST-TEARVYR-EPRGRNSNEPHIKRPMNAFMVWAK 588
Query: 122 DFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
D R++ +A PD + ++K G +WK+MT++EK+PY ++ A L
Sbjct: 589 DERRKILQAFPDMHN-SNISKILGSRWKSMTNQEKQPYYEEQARL 632
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/79 (39%), Positives = 41/79 (51%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTD 153
R K RKK D + PKR +A+ F ++ R + +P S G G K GEKWK +
Sbjct: 6 RKKSSRKK-KDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVG--KLLGEKWKALNS 62
Query: 154 EEKKPYLDKAAELKADYSK 172
E+K PY +KA K Y K
Sbjct: 63 EDKLPYENKAEADKKRYEK 81
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/79 (39%), Positives = 41/79 (51%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTD 153
R K RKK D + PKR +A+ F ++ R + +P S G G K GEKWK +
Sbjct: 6 RKKSSRKK-KDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVG--KLLGEKWKALNS 62
Query: 154 EEKKPYLDKAAELKADYSK 172
E+K PY +KA K Y K
Sbjct: 63 EDKLPYENKAEADKKRYEK 81
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 129 (50.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 31/100 (31%), Positives = 51/100 (51%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
E N+++P + ++ R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 EGNEQRPEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVP 128
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ + G +W + EEK+ YLD+A K Y K +E
Sbjct: 129 -FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 167
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 129 (50.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 34/113 (30%), Positives = 56/113 (49%)
Query: 68 EAQVVEKPAEINKKKPAERKKPTSTEPR---AK-RLRKKD-SDSNKPKRPPTAFFLFMDD 122
+ Q+++ A + P +R + R +K R RKK DSN PK P T + FM++
Sbjct: 57 QGQLLQNEASNTTEGPEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNE 116
Query: 123 FRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
R++ + P+ + + G +W + EEK+ YLD+A K Y K +E
Sbjct: 117 RREQLRAKRPEVP-FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|F1LVZ2 [details] [associations]
symbol:F1LVZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
Length = 199
Score = 122 (48.0 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D + PKRP + F F ++ + K HP + VAK+ GE W N TD +K+PY
Sbjct: 76 KKFKDPSAPKRP-LSLFSFCSEY-PQIKGEHP-GLSIGDVAKKLGEMW-NSTDTDKQPYG 131
Query: 161 DKAAELKADYSK 172
AA+LK Y K
Sbjct: 132 KMAAKLKEKYEK 143
>RGD|1564760 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
Uniprot:D3Z9E3
Length = 376
Score = 128 (50.1 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
AE ++++P + ++ R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 AEGSEQRPEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ + G +W + EEK+ YLD+A K Y K +E
Sbjct: 129 P-FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|P17480 [details] [associations]
symbol:UBTF "Nucleolar transcription factor 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001832
"blastocyst growth" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006356
"regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
Pfam:PF09011 GO:GO:0045943 KO:K09273 eggNOG:NOG327891
HOVERGEN:HBG008708 EMBL:X53390 EMBL:X53461 EMBL:X56687
EMBL:AK291733 EMBL:AK292518 EMBL:BC042297 IPI:IPI00014533
IPI:IPI00220833 PIR:S09318 PIR:S18193 RefSeq:NP_001070151.1
RefSeq:NP_001070152.1 RefSeq:NP_055048.1 UniGene:Hs.89781 PDB:1K99
PDB:1L8Y PDB:1L8Z PDB:2HDZ PDBsum:1K99 PDBsum:1L8Y PDBsum:1L8Z
PDBsum:2HDZ ProteinModelPortal:P17480 SMR:P17480 DIP:DIP-640N
IntAct:P17480 MINT:MINT-1348764 STRING:P17480 PhosphoSite:P17480
DMDM:136652 PaxDb:P17480 PRIDE:P17480 Ensembl:ENST00000302904
Ensembl:ENST00000343638 Ensembl:ENST00000393606
Ensembl:ENST00000436088 Ensembl:ENST00000526094
Ensembl:ENST00000529383 Ensembl:ENST00000533177 GeneID:7343
KEGG:hsa:7343 UCSC:uc002igc.3 UCSC:uc010czs.3 CTD:7343
GeneCards:GC17M042282 HGNC:HGNC:12511 HPA:CAB004611 HPA:HPA006385
MIM:600673 neXtProt:NX_P17480 PharmGKB:PA37158 HOGENOM:HOG000232068
InParanoid:P17480 OMA:CSQRWKL OrthoDB:EOG4V9TQ9 PhylomeDB:P17480
ChiTaRS:UBTF EvolutionaryTrace:P17480 GenomeRNAi:7343 NextBio:28746
ArrayExpress:P17480 Bgee:P17480 CleanEx:HS_UBTF
Genevestigator:P17480 GermOnline:ENSG00000108312 Uniprot:P17480
Length = 764
Score = 122 (48.0 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 39/150 (26%), Positives = 75/150 (50%)
Query: 28 LMRGRDGSAF-ARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAER 86
L+ ++ A+ +C++ K+ V L+ SL + + + + EK INKK+
Sbjct: 334 LLSQKEKDAYHKKCDQKKKDYEVELLRFLE-SLPEEEQQRVLGE--EKMLNINKKQATS- 389
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
P S +P A+ K S+ KPKRP +A F+F ++ R++ +E P+ + + +
Sbjct: 390 --PASKKP-AQEGGKGGSE--KPKRPVSAMFIFSEEKRRQLQEERPELSE-SELTRLLAR 443
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
W ++++++K Y + A LKA + G
Sbjct: 444 MWNDLSEKKKAKYKAREAALKAQSERKPGG 473
Score = 48 (22.0 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 171 SKAMEGNGDYNEVEDKADNEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEENLD 230
SK+ D + +D+ ++E E+ EN E ++D+E+ D
Sbjct: 673 SKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDED 732
Query: 231 D 231
D
Sbjct: 733 D 733
Score = 44 (20.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 175 EGNGDYNEVEDKADNEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E D +E E++ D+E D +E+ + E + D+E+ D+
Sbjct: 683 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDE 739
>WB|WBGene00004771 [details] [associations]
symbol:sem-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:FO080144 eggNOG:NOG130659
GeneTree:ENSGT00690000101789 HSSP:P35710 RefSeq:NP_740846.1
ProteinModelPortal:Q8T3B9 SMR:Q8T3B9 EnsemblMetazoa:C32E12.5.1
EnsemblMetazoa:C32E12.5.2 GeneID:172162 KEGG:cel:CELE_C32E12.5
UCSC:C32E12.5.1 CTD:172162 WormBase:C32E12.5 HOGENOM:HOG000019701
InParanoid:Q8T3B9 OMA:PSEFGHA NextBio:874275 Uniprot:Q8T3B9
Length = 404
Score = 126 (49.4 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 82 KPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
K A++ P S P + K S SN KRP AF ++ R++ E PD ++
Sbjct: 67 KHAQQAIPKSVTPYSDATNCKKS-SNHIKRPMNAFMVWSQMERRKICEHQPDMHNAE-IS 124
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELK 167
K+ G +W+++TDEEK P++ +A L+
Sbjct: 125 KQLGSRWRSLTDEEKAPFVAEAERLR 150
>MGI|MGI:98367 [details] [associations]
symbol:Sox5 "SRY-box containing gene 5" species:10090 "Mus
musculus" [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IGI;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0021953 "central
nervous system neuron differentiation" evidence=IGI] [GO:0032332
"positive regulation of chondrocyte differentiation"
evidence=ISO;IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0045165 "cell fate commitment"
evidence=IGI] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:0048709 "oligodendrocyte differentiation" evidence=IMP]
[GO:0051216 "cartilage development" evidence=IGI] [GO:0060164
"regulation of timing of neuron differentiation" evidence=IMP]
[GO:0061036 "positive regulation of cartilage development"
evidence=ISO] [GO:0071560 "cellular response to transforming growth
factor beta stimulus" evidence=ISO] [GO:2000741 "positive
regulation of mesenchymal stem cell differentiation" evidence=ISO]
InterPro:IPR009071 MGI:MGI:98367 Pfam:PF00505 GO:GO:0005634
GO:GO:0045892 GO:GO:0006355 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0032332 GO:GO:0051216 GO:GO:0048709 GO:GO:0045165
GO:GO:0060164 GO:GO:0021953 HOVERGEN:HBG003915 KO:K09269
HOGENOM:HOG000056455 CTD:6660 eggNOG:NOG253815 OrthoDB:EOG42BX84
EMBL:X65657 EMBL:X65658 EMBL:AB006330 EMBL:AJ010604 IPI:IPI00128018
IPI:IPI00466410 IPI:IPI00467353 PIR:S25195 RefSeq:NP_001230092.1
UniGene:Mm.1752 PDB:1I11 PDBsum:1I11 ProteinModelPortal:P35710
SMR:P35710 IntAct:P35710 STRING:P35710 PhosphoSite:P35710
PRIDE:P35710 Ensembl:ENSMUST00000111748 GeneID:20678 KEGG:mmu:20678
InParanoid:P35710 EvolutionaryTrace:P35710 NextBio:299173
Bgee:P35710 CleanEx:MM_SOX5 Genevestigator:P35710
GermOnline:ENSMUSG00000041540 Uniprot:P35710
Length = 763
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 53 SMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKP--K 110
++ S + +K N E + + N ++ S E R R + SN+P K
Sbjct: 500 TLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVS-ESRIYR-ESRGRGSNEPHIK 557
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RP AF ++ D R++ +A PD + ++K G +WK MT+ EK+PY ++ A L +
Sbjct: 558 RPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 616
Query: 171 SKAMEGNGDY 180
+E DY
Sbjct: 617 ---LEKYPDY 623
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 120 (47.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/114 (24%), Positives = 52/114 (45%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+K + ++P K ++K N PK P T + F+++ R++ + HPD +
Sbjct: 42 EKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEI 100
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
K G +W + EK+ YLD+A K Y K + +E ++++K
Sbjct: 101 TKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAY-QQSEAYKMCTEKIQEK 153
>FB|FBgn0026582 [details] [associations]
symbol:CG9418 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 EMBL:AE013599 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104521
eggNOG:NOG241877 HSSP:P11632 EMBL:AY058722 RefSeq:NP_611553.1
UniGene:Dm.715 SMR:Q9W2K8 DIP:DIP-21305N IntAct:Q9W2K8
MINT:MINT-855426 EnsemblMetazoa:FBtr0071573 GeneID:37407
KEGG:dme:Dmel_CG9418 UCSC:CG9418-RA FlyBase:FBgn0026582
InParanoid:Q9W2K8 OMA:NRSTENE OrthoDB:EOG47M0DS GenomeRNAi:37407
NextBio:803476 Uniprot:Q9W2K8
Length = 376
Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/131 (28%), Positives = 65/131 (49%)
Query: 48 PVALISMHSCSLDAKIKMNLEAQVVEKPAEINKK--KPAERKKPTSTEPRAKRL-RKKDS 104
PV+L + S S+D +E +KPA+ KK P R + K+L +++ +
Sbjct: 16 PVSL-PIASQSMDTA---TIEDFDEDKPAKGKKKAKNPKGRHSDSDIGSELKKLAQRRIN 71
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
+ PK P + FM+D R+E + P + + GE+W + +E K PY++ AA
Sbjct: 72 VAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHT-RIIGEEWHQLPEERKLPYIEAAA 130
Query: 165 ELKADYSKAME 175
+ KA Y + ++
Sbjct: 131 KDKAIYQEQLQ 141
>UNIPROTKB|F1S3U8 [details] [associations]
symbol:SOX13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
OMA:TMVNCTV EMBL:CU972366 Ensembl:ENSSSCT00000016646 Uniprot:F1S3U8
Length = 545
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R + +S+ KRP AF ++ D R++ +A PD + ++K G +WK+MT++EK+PY
Sbjct: 432 RARSRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPY 490
Query: 160 LDKAAELKADYSKAMEGNGDY 180
++ A L + +E DY
Sbjct: 491 YEEQARLSRQH---LEKYPDY 508
>UNIPROTKB|H0YNS8 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AC090984 HGNC:HGNC:5001 ChiTaRS:HMG20A Ensembl:ENST00000559099
Bgee:H0YNS8 Uniprot:H0YNS8
Length = 156
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
AE N+++ + ++ R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 AEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+ + G +W + EEK+ YLD+A
Sbjct: 129 P-FPEITRMLGNEWSKLPPEEKQRYLDEA 156
>UNIPROTKB|A4FUB3 [details] [associations]
symbol:SOX5 "SOX5 protein" species:9913 "Bos taurus"
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
"positive regulation of cartilage development" evidence=IEA]
[GO:0060164 "regulation of timing of neuron differentiation"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045165 "cell fate commitment" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=IEA] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0045892 GO:GO:0071560 GO:GO:0001701
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0032332
GO:GO:0051216 GO:GO:0048709 GO:GO:0045165 GO:GO:0061036
GO:GO:0060164 GO:GO:0021953 GeneTree:ENSGT00690000101789
HOVERGEN:HBG003915 KO:K09269 HOGENOM:HOG000056455 CTD:6660
eggNOG:NOG253815 OMA:PSEHSSM OrthoDB:EOG42BX84 GO:GO:2000741
EMBL:DAAA02014069 EMBL:DAAA02014070 EMBL:DAAA02014071
EMBL:DAAA02014072 EMBL:DAAA02014073 EMBL:DAAA02014074 EMBL:BC114658
IPI:IPI00704971 RefSeq:NP_001076940.1 UniGene:Bt.32918 SMR:A4FUB3
STRING:A4FUB3 Ensembl:ENSBTAT00000030260 GeneID:533829
KEGG:bta:533829 InParanoid:A4FUB3 NextBio:20876164 Uniprot:A4FUB3
Length = 728
Score = 130 (50.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 53 SMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKP--K 110
++ S + +K N E + + N ++ S E R R + SN+P K
Sbjct: 465 TLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVS-ESRIYR-ESRGRGSNEPHIK 522
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RP AF ++ D R++ +A PD + ++K G +WK MT+ EK+PY ++ A L +
Sbjct: 523 RPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 581
Query: 171 SKAMEGNGDY 180
+E DY
Sbjct: 582 ---LEKYPDY 588
Score = 35 (17.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 179 DYNEVEDKADNEVEDKAEN 197
+Y+E ED D + +EN
Sbjct: 703 EYDEEEDDPDVDYGSDSEN 721
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
AE N+++ + ++ R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 AEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ + G +W + EEK+ YLD+A K Y K +E
Sbjct: 129 P-FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
AE N+++ + ++ R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 AEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ + G +W + EEK+ YLD+A K Y K +E
Sbjct: 129 P-FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|G3XAC7 [details] [associations]
symbol:TOX2 "Chromosome 20 open reading frame 100, isoform
CRA_b" species:9606 "Homo sapiens" [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
[GO:0034698 "response to gonadotropin stimulus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CH471077 GO:GO:0045944
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL034419 EMBL:AL121587 EMBL:AL035089 EMBL:AL353797
UniGene:Hs.26608 GeneID:84969 KEGG:hsa:84969 CTD:84969
HGNC:HGNC:16095 GenomeRNAi:84969 NextBio:75504
RefSeq:NP_001092267.1 ProteinModelPortal:G3XAC7 SMR:G3XAC7
Ensembl:ENST00000341197 OMA:DHEASYH ArrayExpress:G3XAC7 Bgee:G3XAC7
Uniprot:G3XAC7
Length = 506
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E+ +E++ K E++ +AK +KK D N+P++P +A+ LF D + K +
Sbjct: 209 EEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 268
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P S V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 269 P-SATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKAL 310
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 123 (48.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 34/111 (30%), Positives = 52/111 (46%)
Query: 69 AQVVEKPAEINKKKPAERKKPTSTEPRAKR-----LRKKDSDSNKPKRPPTAFFLFMDDF 123
A VV E ++ A K P EP KR ++K N PK P T + F+++
Sbjct: 25 AFVVAVKQERSEGSRAGEKGPQEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNER 84
Query: 124 RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
R++ + HPD + K G +W + EK+ YLD+A + K Y K +
Sbjct: 85 REQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 134
>UNIPROTKB|E1BQV6 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
"estrogen response element binding" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
Length = 580
Score = 121 (47.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTS-TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E E N+ +R P S +P+ + +KK D N+P++P +A+ LF D + K +
Sbjct: 224 EDADESNRATGEKRAAPDSGKKPKTPK-KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 282
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P++ V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 283 PNAT-FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKAL 324
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSS 25
P +SKS P P ++ + A S+
Sbjct: 207 PPASKSATPSPSSSINEEDADESN 230
>MGI|MGI:98512 [details] [associations]
symbol:Ubtf "upstream binding transcription factor, RNA
polymerase I" species:10090 "Mus musculus" [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045943 "positive regulation of
transcription from RNA polymerase I promoter" evidence=IDA]
InterPro:IPR009071 MGI:MGI:98512 Pfam:PF00505 GO:GO:0005730
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000183 Pfam:PF09011
GO:GO:0045943 eggNOG:NOG327891 HOVERGEN:HBG008708
HOGENOM:HOG000232068 EMBL:X60831 IPI:IPI00114869 IPI:IPI00223407
PIR:S22314 UniGene:Mm.2845 PDB:1V63 PDB:1V64 PDB:1WGF PDBsum:1V63
PDBsum:1V64 PDBsum:1WGF ProteinModelPortal:P25976 SMR:P25976
DIP:DIP-29977N MINT:MINT-4084181 STRING:P25976 PhosphoSite:P25976
PaxDb:P25976 PRIDE:P25976 InParanoid:P25976
EvolutionaryTrace:P25976 Genevestigator:P25976
GermOnline:ENSMUSG00000020923 Uniprot:P25976
Length = 765
Score = 124 (48.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 38/150 (25%), Positives = 73/150 (48%)
Query: 28 LMRGRDGSAF-ARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAER 86
L+ ++ A+ +C++ K+ V L+ SL + + + + EK INKK+
Sbjct: 334 LLSQKEKDAYHKKCDQKKKDYEVELLRFLE-SLPEEEQQRVLGE--EKMLNINKKQTTS- 389
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
P S +P + + S KPKRP +A F+F ++ R++ +E P+ + + +
Sbjct: 390 --PASKKPSQEGGK---GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE-SELTRLLAR 443
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
W ++T+++K Y + A LKA + G
Sbjct: 444 MWNDLTEKKKAKYKAREAALKAQSERKPGG 473
Score = 42 (19.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 161 DKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
D + D S+ + N D ++ ED D++ ED+
Sbjct: 709 DSSESSSEDESEDGDENDDDDDDEDDEDDDDEDE 742
>UNIPROTKB|F1S992 [details] [associations]
symbol:SOX-6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00690000101789 PANTHER:PTHR10270:SF89 EMBL:CU462935
EMBL:CU576535 Ensembl:ENSSSCT00000014619 ArrayExpress:F1S992
Uniprot:F1S992
Length = 247
Score = 120 (47.3 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 20 TVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 78
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 79 KSMSNQEKQPYYEEQARL 96
>UNIPROTKB|F1REZ8 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 OMA:HSLIMRS EMBL:CU442721
EMBL:CU457410 Ensembl:ENSSSCT00000003136 Uniprot:F1REZ8
Length = 542
Score = 119 (46.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTS-TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E E N+ +R P S +P+ + +KK D N+P++P +A+ LF D + K +
Sbjct: 190 EDADESNRAIGEKRAAPDSGKKPKTPK-KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 248
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P++ V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 249 PNAT-FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKAL 290
Score = 44 (20.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSSATL 28
P +SKS P P ++ + A S+ +
Sbjct: 173 PPASKSATPSPSSSINEEDADESNRAI 199
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 122 (48.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 34/111 (30%), Positives = 52/111 (46%)
Query: 69 AQVVEKPAEINKKKPAERKKPTSTEPRAKR-----LRKKDSDSNKPKRPPTAFFLFMDDF 123
A VV E ++ A K P EP KR ++K N PK P T + F+++
Sbjct: 25 AFVVAVKQERSEGPRAGEKGPQEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNER 84
Query: 124 RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
R++ + HPD + K G +W + EK+ YLD+A + K Y K +
Sbjct: 85 REQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 134
>MGI|MGI:98361 [details] [associations]
symbol:Sox13 "SRY-box containing gene 13" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] InterPro:IPR009071 MGI:MGI:98361
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0043565
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00690000101789 CTD:9580
eggNOG:NOG275089 HOVERGEN:HBG003915 KO:K09269 OMA:TMVNCTV
EMBL:BC007130 EMBL:AB006329 EMBL:AJ000740 EMBL:Z18962
IPI:IPI00228353 PIR:JC6550 PIR:S30241 RefSeq:NP_035569.2
UniGene:Mm.8575 ProteinModelPortal:Q04891 SMR:Q04891 STRING:Q04891
PhosphoSite:Q04891 PRIDE:Q04891 Ensembl:ENSMUST00000094551
Ensembl:ENSMUST00000153799 GeneID:20668 KEGG:mmu:20668
UCSC:uc007cqk.1 HOGENOM:HOG000056455 InParanoid:Q04891
NextBio:299137 Bgee:Q04891 CleanEx:MM_SOX13 Genevestigator:Q04891
GermOnline:ENSMUSG00000070643 Uniprot:Q04891
Length = 613
Score = 124 (48.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 32/116 (27%), Positives = 60/116 (51%)
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFR 124
++L++ ++ E + P E S + R + +S+ KRP AF ++ D R
Sbjct: 373 ISLDSSPAKERLEESCVHPLEEAM-LSCDMDGSRHFSESRNSSHIKRPMNAFMVWAKDER 431
Query: 125 KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
++ +A PD + ++K G +WK+MT++EK+PY ++ A L + +E DY
Sbjct: 432 RKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPYYEEQARLSRQH---LEKYPDY 483
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 3 SSSKSNAPKPRKRVDAQSASTSSATL 28
S S +P+P++ +++AS S L
Sbjct: 70 SPESSGSPEPKRPAASEAASGSQERL 95
>GENEDB_PFALCIPARUM|MAL13P1.290 [details] [associations]
symbol:MAL13P1.290 "high mobility group
protein 4, putative" species:5833 "Plasmodium falciparum"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] InterPro:IPR009071 InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 GO:GO:0005634 GO:GO:0043565
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0003697
EMBL:AL844509 Pfam:PF09011 GO:GO:0006268 KO:K03004
RefSeq:XP_001350301.2 ProteinModelPortal:Q8IDB5
EnsemblProtists:MAL13P1.290:mRNA GeneID:813853 KEGG:pfa:MAL13P1.290
EuPathDB:PlasmoDB:PF3D7_1359200 HOGENOM:HOG000281700
ProtClustDB:CLSZ2433095 Uniprot:Q8IDB5
Length = 252
Score = 120 (47.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYK-----EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
D KPK PP+++ +F + R+ K + ++ +T + KE KWKN+ ++E+K Y
Sbjct: 2 DRKKPKAPPSSYLIFCNYERENAKNTLLQKCDKETIRITDIQKELSNKWKNLPEDERKKY 61
Query: 160 LDKAAELKADYSKAM-EGNGDYNE 182
++A LK+ Y++ + E NE
Sbjct: 62 EEQAQILKSKYNEELLEWKNHSNE 85
>UNIPROTKB|Q8IDB5 [details] [associations]
symbol:MAL13P1.290 "High mobility group protein 4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000785
"chromatin" evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0006268 "DNA unwinding involved in replication"
evidence=ISS] InterPro:IPR009071 InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 GO:GO:0005634 GO:GO:0043565
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0003697
EMBL:AL844509 Pfam:PF09011 GO:GO:0006268 KO:K03004
RefSeq:XP_001350301.2 ProteinModelPortal:Q8IDB5
EnsemblProtists:MAL13P1.290:mRNA GeneID:813853 KEGG:pfa:MAL13P1.290
EuPathDB:PlasmoDB:PF3D7_1359200 HOGENOM:HOG000281700
ProtClustDB:CLSZ2433095 Uniprot:Q8IDB5
Length = 252
Score = 120 (47.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYK-----EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
D KPK PP+++ +F + R+ K + ++ +T + KE KWKN+ ++E+K Y
Sbjct: 2 DRKKPKAPPSSYLIFCNYERENAKNTLLQKCDKETIRITDIQKELSNKWKNLPEDERKKY 61
Query: 160 LDKAAELKADYSKAM-EGNGDYNE 182
++A LK+ Y++ + E NE
Sbjct: 62 EEQAQILKSKYNEELLEWKNHSNE 85
>UNIPROTKB|P35711 [details] [associations]
symbol:SOX5 "Transcription factor SOX-5" species:9606 "Homo
sapiens" [GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045165 "cell fate
commitment" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0060164 "regulation of timing of neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0032332
"positive regulation of chondrocyte differentiation" evidence=IDA]
[GO:0061036 "positive regulation of cartilage development"
evidence=IDA] [GO:0071560 "cellular response to transforming growth
factor beta stimulus" evidence=IDA] [GO:2000741 "positive
regulation of mesenchymal stem cell differentiation" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0045892
GO:GO:0071560 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0006366 GO:GO:0032332 GO:GO:0051216
GO:GO:0048709 GO:GO:0045165 GO:GO:0061036 GO:GO:0060164
GO:GO:0021953 HOVERGEN:HBG003915 KO:K09269 EMBL:AB081588
EMBL:AB081589 EMBL:AB081590 EMBL:AB081591 EMBL:AK074317
EMBL:AK098610 EMBL:AK303970 EMBL:AC087244 EMBL:AC087260
EMBL:AC087319 EMBL:AC092864 EMBL:BC029220 EMBL:BC035227
EMBL:BC047665 EMBL:BC060773 EMBL:S83308 EMBL:X65662 IPI:IPI00166143
IPI:IPI00171247 IPI:IPI00216317 IPI:IPI00221270 IPI:IPI01010805
PIR:S22939 RefSeq:NP_001248343.1 RefSeq:NP_001248344.1
RefSeq:NP_008871.3 RefSeq:NP_694534.1 RefSeq:NP_821078.1
UniGene:Hs.657542 ProteinModelPortal:P35711 SMR:P35711
IntAct:P35711 MINT:MINT-1198407 STRING:P35711 PhosphoSite:P35711
DMDM:30179883 PRIDE:P35711 DNASU:6660 Ensembl:ENST00000309359
Ensembl:ENST00000381381 Ensembl:ENST00000396007
Ensembl:ENST00000451604 Ensembl:ENST00000541536
Ensembl:ENST00000545921 Ensembl:ENST00000546136 GeneID:6660
KEGG:hsa:6660 UCSC:uc001rfv.3 UCSC:uc001rfw.3 UCSC:uc001rfy.3
CTD:6660 GeneCards:GC12M023585 HGNC:HGNC:11201 MIM:604975
neXtProt:NX_P35711 PharmGKB:PA36038 eggNOG:NOG253815
InParanoid:P35711 OMA:PSEHSSM OrthoDB:EOG42BX84 PhylomeDB:P35711
ChiTaRS:SOX5 GenomeRNAi:6660 NextBio:25963 ArrayExpress:P35711
Bgee:P35711 Genevestigator:P35711 GermOnline:ENSG00000134532
GO:GO:2000741 Uniprot:P35711
Length = 763
Score = 129 (50.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 53 SMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKP--K 110
++ S + +K N E + + N ++ S E R R + SN+P K
Sbjct: 500 TLESLTQQLAVKQNEEGKFSHAMMDFNLSGDSDGSAGVS-ESRIYR-ESRGRGSNEPHIK 557
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RP AF ++ D R++ +A PD + ++K G +WK MT+ EK+PY ++ A L +
Sbjct: 558 RPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 616
Query: 171 SKAMEGNGDY 180
+E DY
Sbjct: 617 ---LEKYPDY 623
Score = 35 (17.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 179 DYNEVEDKADNEVEDKAEN 197
+Y+E ED D + +EN
Sbjct: 738 EYDEEEDDPDVDYGSDSEN 756
>RGD|735184 [details] [associations]
symbol:Tox2 "TOX high mobility group box family member 2"
species:10116 "Rattus norvegicus" [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEP] [GO:0034698
"response to gonadotropin stimulus" evidence=IEP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR009071 Pfam:PF00505 RGD:735184
GO:GO:0005634 GO:GO:0008585 GO:GO:0034698 GO:GO:0003677
GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:84969 eggNOG:NOG291143
HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AB096685
IPI:IPI00400737 RefSeq:NP_955424.2 UniGene:Rn.129021
ProteinModelPortal:Q76IQ7 SMR:Q76IQ7 PRIDE:Q76IQ7 GeneID:311615
KEGG:rno:311615 UCSC:RGD:735184 InParanoid:Q76IQ7 OrthoDB:EOG44J2JB
NextBio:663917 ArrayExpress:Q76IQ7 Genevestigator:Q76IQ7
GermOnline:ENSRNOG00000008146 Uniprot:Q76IQ7
Length = 473
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E+ ++ + K E++ T +AK +KK D N+P++P +A+ LF D + K +
Sbjct: 167 EEESDAHFKISGEKRPSTDPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 226
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P S V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 227 P-SATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKAL 268
>RGD|1309674 [details] [associations]
symbol:Sox13 "SRY (sex determining region Y)-box 13"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO] InterPro:IPR009071 Pfam:PF00505 RGD:1309674
GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
OrthoDB:EOG40S0F9 IPI:IPI00869801 Ensembl:ENSRNOT00000032244
UCSC:RGD:1309674 Uniprot:D4A8S0
Length = 613
Score = 125 (49.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 32/116 (27%), Positives = 59/116 (50%)
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFR 124
++L++ ++ E N P E + R + +S+ KRP AF ++ D R
Sbjct: 373 ISLDSSPAKERLEENCVHPLEEAM-LGCDVDGSRHFSESRNSSHIKRPMNAFMVWAKDER 431
Query: 125 KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
++ +A PD + ++K G +WK+MT++EK+PY ++ A L + +E DY
Sbjct: 432 RKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPYYEEQARLSRQH---LEKYPDY 483
Score = 37 (18.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 3 SSSKSNAPKPRKRVDAQSASTSSATL 28
S S +P P++ +++AS S L
Sbjct: 70 SPQSSGSPDPKRPAASEAASGSQERL 95
>UNIPROTKB|Q9UN79 [details] [associations]
symbol:SOX13 "Transcription factor SOX-13" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
EMBL:CH471067 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0009653
EMBL:AL592146 EMBL:AF083105 EMBL:AF098915 EMBL:AF116571
EMBL:AK304192 EMBL:AF149301 EMBL:BC106038 IPI:IPI00219551
RefSeq:NP_005677.2 UniGene:Hs.201671 ProteinModelPortal:Q9UN79
SMR:Q9UN79 IntAct:Q9UN79 MINT:MINT-1179847 STRING:Q9UN79
PhosphoSite:Q9UN79 DMDM:288558840 PRIDE:Q9UN79 DNASU:9580
Ensembl:ENST00000367204 GeneID:9580 KEGG:hsa:9580 UCSC:uc001ham.3
CTD:9580 GeneCards:GC01P204043 HGNC:HGNC:11192 MIM:604748
neXtProt:NX_Q9UN79 PharmGKB:PA36029 eggNOG:NOG275089
HOVERGEN:HBG003915 InParanoid:Q9UN79 KO:K09269 OMA:TMVNCTV
OrthoDB:EOG40S0F9 GenomeRNAi:9580 NextBio:35933 ArrayExpress:Q9UN79
Bgee:Q9UN79 CleanEx:HS_SOX13 Genevestigator:Q9UN79
GermOnline:ENSG00000143842 Uniprot:Q9UN79
Length = 622
Score = 125 (49.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 38/137 (27%), Positives = 67/137 (48%)
Query: 51 LISMHSCSLDA-------KIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD 103
L+ HS +LD K ++L++ ++ E P E S + R +
Sbjct: 360 LLHSHSGALDGSPNTPFRKDLISLDSSPAKERLEDGCVHPLEEAM-LSCDMDGSRHFPES 418
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+S+ KRP AF ++ D R++ +A PD + ++K G +WK+MT++EK+PY ++
Sbjct: 419 RNSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMTNQEKQPYYEEQ 477
Query: 164 AELKADYSKAMEGNGDY 180
A L + +E DY
Sbjct: 478 ARLSRQH---LEKYPDY 491
>UNIPROTKB|H0YKM5 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] EMBL:AC090984 Ensembl:ENST00000560867 HGNC:HGNC:5001
ChiTaRS:HMG20A Bgee:H0YKM5 GO:GO:0005634 Gene3D:1.10.30.10
InterPro:IPR009071 Pfam:PF00505 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Uniprot:H0YKM5
Length = 162
Score = 111 (44.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
AE N+++ + ++ R RKK DSN PK P T + FM++ R++ + P+
Sbjct: 69 AEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+ + G +W + EEK+ YLD+A
Sbjct: 129 P-FPEITRMLGNEWSKLPPEEKQRYLDEA 156
>RGD|2319567 [details] [associations]
symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
Uniprot:F1LNG6
Length = 219
Score = 117 (46.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEK 156
+L D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK
Sbjct: 126 QLNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 185
Query: 157 KPYLDKAAELKADYSKAME 175
+ D A KA Y + M+
Sbjct: 186 GKFEDMAKADKARYEREMK 204
>UNIPROTKB|E1BKT2 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 CTD:27324 OMA:HSLIMRS
EMBL:DAAA02046427 EMBL:DAAA02046428 EMBL:DAAA02046429
EMBL:DAAA02046430 IPI:IPI00715207 RefSeq:XP_002694823.1
RefSeq:XP_885168.3 ProteinModelPortal:E1BKT2
Ensembl:ENSBTAT00000000539 GeneID:539135 KEGG:bta:539135
NextBio:20877802 Uniprot:E1BKT2
Length = 556
Score = 120 (47.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTS-TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E E N+ +R P S +P+ + +KK D N+P++P +A+ LF D + K +
Sbjct: 219 EDADETNRAIGEKRAAPDSGKKPKTPK-KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 277
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P++ V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 278 PNAT-FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKAL 319
Score = 41 (19.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSSATL 28
P +SKS P P ++ + A ++ +
Sbjct: 202 PPASKSATPSPSSSINEEDADETNRAI 228
>RGD|1311529 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=IDA] [GO:0034056 "estrogen response element binding"
evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0051219 "phosphoprotein binding" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
Genevestigator:B7SBD2 Uniprot:B7SBD2
Length = 577
Score = 121 (47.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTS-TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E E N+ +R P S +P+ + +KK D N+P++P +A+ LF D + K +
Sbjct: 218 EDADETNRAVGEKRTAPDSGKKPKTPK-KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 276
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P++ V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 277 PNAT-FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKAL 318
Score = 40 (19.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSS 25
P +SKS P P ++ + A ++
Sbjct: 201 PPASKSATPSPSSSINEEDADETN 224
>ZFIN|ZDB-GENE-980526-102 [details] [associations]
symbol:sox19a "SRY-box containing gene 19a"
species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=IC] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-980526-102 GO:GO:0051091 GO:GO:0005667
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00690000101940 EMBL:BX119902 InterPro:IPR022097
Pfam:PF12336 IPI:IPI00931891 Ensembl:ENSDART00000013309
ArrayExpress:E7F9F4 Bgee:E7F9F4 Uniprot:E7F9F4
Length = 314
Score = 120 (47.3 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 92 TEPRAKRL----RKKDSDS-NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
++PRAK +++ SD +K KRP AF ++ R++ + +P + ++K G
Sbjct: 29 SDPRAKPAVNSQQQQSSDPMDKVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGA 87
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD EK+P++D+A L+A + K
Sbjct: 88 EWKLLTDAEKRPFIDEAKRLRALHMK 113
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 120 (47.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 28/114 (24%), Positives = 52/114 (45%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+K + ++P K ++K N PK P T + F+++ R++ + HPD +
Sbjct: 42 EKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEI 100
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
K G +W + EK+ YLD+A K Y K + +E ++++K
Sbjct: 101 TKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAY-QQSEAYKMCTEKIQEK 153
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 120 (47.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 28/114 (24%), Positives = 52/114 (45%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+K + ++P K ++K N PK P T + F+++ R++ + HPD +
Sbjct: 42 EKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEI 100
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
K G +W + EK+ YLD+A K Y K + +E ++++K
Sbjct: 101 TKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAY-QQSEAYKMCTEKIQEK 153
>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
symbol:hmgb1b "high-mobility group box 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
Length = 165
Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP+ S + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 164 AELKADYSKAMEGNGDYNEVEDKADN 189
+ K Y + M+ N + K +N
Sbjct: 64 KQDKVRYEREMK-----NYIPPKGEN 84
>UNIPROTKB|O15405 [details] [associations]
symbol:TOX3 "TOX high mobility group box family member 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
"phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
response element binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
Genevestigator:O15405 Uniprot:O15405
Length = 576
Score = 120 (47.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTS-TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E E N+ +R P S +P+ + +KK D N+P++P +A+ LF D + K +
Sbjct: 219 EDADEANRAIGEKRAAPDSGKKPKTPK-KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 277
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P++ V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 278 PNAT-FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKAL 319
Score = 41 (19.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSSATL 28
P +SKS P P ++ + A ++ +
Sbjct: 202 PPASKSATPSPSSSINEEDADEANRAI 228
>UNIPROTKB|Q86G49 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform b" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
EMBL:FO081738 HSSP:P35710 UCSC:T22B7.1c.2 HOGENOM:HOG000020384
NextBio:911168 ProteinModelPortal:Q86G49 SMR:Q86G49 STRING:Q86G49
EnsemblMetazoa:T22B7.1b.1 EnsemblMetazoa:T22B7.1b.2
WormBase:T22B7.1b ArrayExpress:Q86G49 Uniprot:Q86G49
Length = 316
Score = 119 (46.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS R + N KRP AF ++ D R++ +A+PD + ++K G +WK
Sbjct: 156 TSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWK 214
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M++ EK+PY ++ + L + ME + DY
Sbjct: 215 GMSNSEKQPYYEEQSRLSKLH---MEQHPDY 242
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 119 (46.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 28/114 (24%), Positives = 52/114 (45%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+K + ++P K ++K N PK P T + F+++ R++ + HPD +
Sbjct: 42 EKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEI 100
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
K G +W + EK+ YLD+A K Y K + +E ++++K
Sbjct: 101 TKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAY-QQSEAYKMCAEKIQEK 153
>UNIPROTKB|H2L0M3 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform d" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
EMBL:FO081738 ProteinModelPortal:H2L0M3 SMR:H2L0M3
EnsemblMetazoa:T22B7.1d WormBase:T22B7.1d Uniprot:H2L0M3
Length = 319
Score = 119 (46.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS R + N KRP AF ++ D R++ +A+PD + ++K G +WK
Sbjct: 159 TSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWK 217
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M++ EK+PY ++ + L + ME + DY
Sbjct: 218 GMSNSEKQPYYEEQSRLSKLH---MEQHPDY 245
>UNIPROTKB|P40647 [details] [associations]
symbol:sox5 "Transcription factor Sox-5" species:8355
"Xenopus laevis" [GO:0090263 "positive regulation of canonical Wnt
receptor signaling pathway" evidence=IDA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0090263 HOVERGEN:HBG003915 KO:K09269 CTD:6660
EMBL:BC142559 EMBL:DR718509 EMBL:X65653 PIR:S22949
RefSeq:NP_001167508.1 UniGene:Xl.21446 UniGene:Xl.85854
GeneID:100381154 KEGG:xla:100381154 Xenbase:XB-GENE-865667
Uniprot:P40647
Length = 757
Score = 123 (48.4 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 92 TEPRAKRLRKKDSDSNKP--KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
+E R R + SN+P KRP AF ++ D R++ +A PD + ++K G +WK
Sbjct: 541 SESRIYR-EARGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWK 598
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
+MT+ EK+PY ++ A L + +E DY
Sbjct: 599 SMTNLEKQPYYEEQARLSKQH---LEKYPDY 626
Score = 39 (18.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 11 KPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISM 54
KP+ S+S +S + R GS + + P+ L S+
Sbjct: 401 KPKGSDSRSSSSPTSPHIQRLSSGSTHKPISSTSASTPIRLNSI 444
>UNIPROTKB|F1NLS2 [details] [associations]
symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
Length = 264
Score = 116 (45.9 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 34/153 (22%), Positives = 71/153 (46%)
Query: 75 PAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
PA+ K RK+ + R+ R++++ + KPKRP + F +F+ + ++ K P +
Sbjct: 120 PAQAAALKEERRKR--LAKRRSFRIKRELTVLGKPKRPRSGFNIFVSENFQQSKGLSPTA 177
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
K K+ E W+N++ +K+PYL A + K Y M+ + + VE ++ + +
Sbjct: 178 K-----LKQLFETWQNLSSSQKQPYLQLAQDDKVRYQNEMK-SWEAKMVELGREDLIRSR 231
Query: 195 AENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEE 227
+ +A+ ++++ EE
Sbjct: 232 EQRPKKKTDTAQEGSKASLRESLAKLKLKKSEE 264
>UNIPROTKB|E9PKP7 [details] [associations]
symbol:UBTF "Nucleolar transcription factor 1" species:9606
"Homo sapiens" [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005730 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004596
Pfam:PF09011 HGNC:HGNC:12511 ChiTaRS:UBTF IPI:IPI00979797
ProteinModelPortal:E9PKP7 SMR:E9PKP7 Ensembl:ENST00000527034
ArrayExpress:E9PKP7 Bgee:E9PKP7 Uniprot:E9PKP7
Length = 745
Score = 122 (48.0 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 39/150 (26%), Positives = 75/150 (50%)
Query: 28 LMRGRDGSAF-ARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAER 86
L+ ++ A+ +C++ K+ V L+ SL + + + + EK INKK+
Sbjct: 297 LLSQKEKDAYHKKCDQKKKDYEVELLRFLE-SLPEEEQQRVLGE--EKMLNINKKQATS- 352
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
P S +P A+ K S+ KPKRP +A F+F ++ R++ +E P+ + + +
Sbjct: 353 --PASKKP-AQEGGKGGSE--KPKRPVSAMFIFSEEKRRQLQEERPELSE-SELTRLLAR 406
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
W ++++++K Y + A LKA + G
Sbjct: 407 MWNDLSEKKKAKYKAREAALKAQSERKPGG 436
>UNIPROTKB|Q4PIT4 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform c" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
EMBL:FO081738 UniGene:Cel.8590 GeneID:180833 KEGG:cel:CELE_T22B7.1
UCSC:T22B7.1c.2 CTD:180833 HOGENOM:HOG000020384 NextBio:911168
RefSeq:NP_001024920.1 ProteinModelPortal:Q4PIT4 SMR:Q4PIT4
STRING:Q4PIT4 EnsemblMetazoa:T22B7.1c.1 EnsemblMetazoa:T22B7.1c.2
WormBase:T22B7.1c ArrayExpress:Q4PIT4 Uniprot:Q4PIT4
Length = 422
Score = 119 (46.9 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS R + N KRP AF ++ D R++ +A+PD + ++K G +WK
Sbjct: 262 TSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWK 320
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M++ EK+PY ++ + L + ME + DY
Sbjct: 321 GMSNSEKQPYYEEQSRLSKLH---MEQHPDY 348
>MGI|MGI:1915389 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO]
InterPro:IPR009071 MGI:MGI:1915389 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
GO:GO:0072357 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P ChiTaRS:TOX4 EMBL:AF228408
EMBL:AK019980 EMBL:AK088144 EMBL:AK147023 EMBL:AK147834
EMBL:BC050091 IPI:IPI00121251 RefSeq:NP_075923.2 UniGene:Mm.246237
ProteinModelPortal:Q8BU11 SMR:Q8BU11 IntAct:Q8BU11
PhosphoSite:Q8BU11 PaxDb:Q8BU11 PRIDE:Q8BU11
Ensembl:ENSMUST00000022766 GeneID:268741 KEGG:mmu:268741
InParanoid:Q3UGN7 NextBio:392465 Bgee:Q8BU11 CleanEx:MM_TOX4
Genevestigator:Q8BU11 GermOnline:ENSMUSG00000016831 Uniprot:Q8BU11
Length = 619
Score = 121 (47.7 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRK-KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
+ ++ PA++ T + K +K K D N+P++P +A+ LF D + K +P++
Sbjct: 190 DFRRQLPAQKTVVVETGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT 249
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184
V+K W ++ +E+K+ Y K K +Y KA+ D E +
Sbjct: 250 -FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQ 297
>RGD|708449 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0072357 "PTW/PP1
phosphatase complex" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR009071 Pfam:PF00505 RGD:708449
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 HOVERGEN:HBG051013
OrthoDB:EOG4JT05P EMBL:AF267197 IPI:IPI00201166 UniGene:Rn.22195
ProteinModelPortal:Q99PM1 SMR:Q99PM1 PhosphoSite:Q99PM1
PRIDE:Q99PM1 UCSC:RGD:708449 InParanoid:Q99PM1 ArrayExpress:Q99PM1
Genevestigator:Q99PM1 GermOnline:ENSRNOG00000012844 Uniprot:Q99PM1
Length = 619
Score = 121 (47.7 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRK-KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
+ ++ PA++ T + K +K K D N+P++P +A+ LF D + K +P++
Sbjct: 190 DFRRQLPAQKTVVVETGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT 249
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184
V+K W ++ +E+K+ Y K K +Y KA+ D E +
Sbjct: 250 -FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQ 297
>UNIPROTKB|F6UQM4 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR027153
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00690000101789 OMA:FENLGPQ
PANTHER:PTHR10270:SF89 Ensembl:ENSCAFT00000013736 EMBL:AAEX03012946
EMBL:AAEX03012947 EMBL:AAEX03012948 Uniprot:F6UQM4
Length = 793
Score = 122 (48.0 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 566 TVAEARVYRDARSRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 624
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 625 KSMSNQEKQPYYEEQARL 642
>MGI|MGI:3039593 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=ISO] [GO:0034056 "estrogen response element binding"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0051219
"phosphoprotein binding" evidence=ISO] InterPro:IPR009071
PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
Length = 575
Score = 117 (46.2 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 29/103 (28%), Positives = 53/103 (51%)
Query: 73 EKPAEINKKKPAERKKPTS-TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
E + N+ +R P S +P+ + +KK D N+P++P +A+ LF D + K +
Sbjct: 218 EDADDANRAIGEKRTAPDSGKKPKTPK-KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 276
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
P++ V+K W ++ +E+K+ Y K K +Y KA+
Sbjct: 277 PNAT-FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKAL 318
Score = 41 (19.5 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSSATL 28
P +SKS P P ++ + A ++ +
Sbjct: 201 PPASKSATPSPSSSINEEDADDANRAI 227
>UNIPROTKB|E2QTS7 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR027153
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 PANTHER:PTHR10270:SF89 Ensembl:ENSCAFT00000013736
Uniprot:E2QTS7
Length = 829
Score = 122 (48.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 602 TVAEARVYRDARSRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 660
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 661 KSMSNQEKQPYYEEQARL 678
>WB|WBGene00001182 [details] [associations]
symbol:egl-13 species:6239 "Caenorhabditis elegans"
[GO:0018991 "oviposition" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IMP] [GO:0009653 "anatomical
structure morphogenesis" evidence=IMP] [GO:0040025 "vulval
development" evidence=IMP] [GO:0045026 "plasma membrane fusion"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0001708 "cell fate specification" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0001708
GO:GO:0018991 GO:GO:0040011 GO:GO:0003700 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035
GO:GO:0030163 GO:GO:0009653 GO:GO:0040025 GO:GO:0045026
GeneTree:ENSGT00690000101789 eggNOG:NOG253815 EMBL:FO081738
EMBL:AF097319 PIR:T25909 PIR:T43675 RefSeq:NP_001024918.1
UniGene:Cel.8590 HSSP:P35710 ProteinModelPortal:Q23045 SMR:Q23045
IntAct:Q23045 STRING:Q23045 PRIDE:Q23045 EnsemblMetazoa:T22B7.1a
GeneID:180833 KEGG:cel:CELE_T22B7.1 UCSC:T22B7.1c.2 CTD:180833
WormBase:T22B7.1a HOGENOM:HOG000020384 InParanoid:Q23045
OMA:STISDHT NextBio:911168 ArrayExpress:Q23045 Uniprot:Q23045
Length = 470
Score = 119 (46.9 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS R + N KRP AF ++ D R++ +A+PD + ++K G +WK
Sbjct: 310 TSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWK 368
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M++ EK+PY ++ + L + ME + DY
Sbjct: 369 GMSNSEKQPYYEEQSRLSKLH---MEQHPDY 396
>UNIPROTKB|Q23045 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
eggNOG:NOG253815 EMBL:FO081738 EMBL:AF097319 PIR:T25909 PIR:T43675
RefSeq:NP_001024918.1 UniGene:Cel.8590 HSSP:P35710
ProteinModelPortal:Q23045 SMR:Q23045 IntAct:Q23045 STRING:Q23045
PRIDE:Q23045 EnsemblMetazoa:T22B7.1a GeneID:180833
KEGG:cel:CELE_T22B7.1 UCSC:T22B7.1c.2 CTD:180833 WormBase:T22B7.1a
HOGENOM:HOG000020384 InParanoid:Q23045 OMA:STISDHT NextBio:911168
ArrayExpress:Q23045 Uniprot:Q23045
Length = 470
Score = 119 (46.9 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS R + N KRP AF ++ D R++ +A+PD + ++K G +WK
Sbjct: 310 TSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN-SNISKILGSRWK 368
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M++ EK+PY ++ + L + ME + DY
Sbjct: 369 GMSNSEKQPYYEEQSRLSKLH---MEQHPDY 396
>RGD|3759 [details] [associations]
symbol:Sry "sex determining region Y" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007530 "sex determination" evidence=ISO]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008301 "DNA
binding, bending" evidence=ISO] [GO:0008584 "male gonad development"
evidence=ISO] [GO:0010629 "negative regulation of gene expression"
evidence=ISO] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IPI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=ISO;IEP]
[GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA polymerase
II promoter" evidence=IDA] [GO:2000020 "positive regulation of male
gonad development" evidence=ISO] InterPro:IPR009071 Pfam:PF00505
RGD:3759 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0016607
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GO:GO:0030238 HOVERGEN:HBG008712 InterPro:IPR027151
PANTHER:PTHR10270:SF84 EMBL:X89730 EMBL:AJ222688 EMBL:Z26907
IPI:IPI00551785 PIR:S58088 ProteinModelPortal:P36394 SMR:P36394
PRIDE:P36394 Genevestigator:P36394 Uniprot:P36394
Length = 121
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KRP AF ++ R + + +P + + ++K+ G +WK++T+ EK+P+ +A LK
Sbjct: 6 KRPMNAFMVWSRGERHKLAQQNPSMQN-SEISKQLGYQWKSLTEAEKRPFFQEAQRLK 62
>UNIPROTKB|P36393 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0007548 "sex differentiation"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005634 GO:GO:0030154 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548 GO:GO:0030238
CTD:6736 HOVERGEN:HBG008712 PANTHER:PTHR10270:SF48 EMBL:U49860
EMBL:Z23070 EMBL:S79625 EMBL:Z26909 PIR:I47151 RefSeq:NP_999617.2
ProteinModelPortal:P36393 SMR:P36393 GeneID:407740 KEGG:ssc:407740
Uniprot:P36393
Length = 208
Score = 112 (44.5 bits), Expect = 0.00010, P = 0.00010
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
+S + R R ++S ++ KRP AF ++ D R++ +P + + ++K G KWK
Sbjct: 43 SSNDGRETRGSGRESGQDRVKRPMNAFIVWSRDQRRKVALENPQMQN-SEISKWLGCKWK 101
Query: 150 NMTDEEKKPYLDKAAELKA 168
+T+ EK+P+ ++A L+A
Sbjct: 102 MLTEAEKRPFFEEAQRLQA 120
>UNIPROTKB|P35713 [details] [associations]
symbol:SOX18 "Transcription factor SOX-18" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0048469 "cell maturation" evidence=IEA] [GO:0048866 "stem cell
fate specification" evidence=IEA] [GO:0072091 "regulation of stem
cell proliferation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0061028 "establishment of endothelial barrier" evidence=IMP]
[GO:0001525 "angiogenesis" evidence=IEP] [GO:0043534 "blood vessel
endothelial cell migration" evidence=IEP] [GO:0001946
"lymphangiogenesis" evidence=IMP] [GO:0022405 "hair cycle process"
evidence=IMP] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000978 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IDA]
[GO:0042789 "mRNA transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0003151 "outflow tract morphogenesis"
evidence=ISS] [GO:0001947 "heart looping" evidence=ISS] [GO:0001570
"vasculogenesis" evidence=ISS] [GO:0001944 "vasculature
development" evidence=ISS] [GO:0035050 "embryonic heart tube
development" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0060214 "endocardium formation" evidence=ISS] [GO:0060836
"lymphatic endothelial cell differentiation" evidence=ISS]
[GO:0060956 "endocardial cell differentiation" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0001701 GO:GO:0001525
GO:GO:0000978 GO:GO:0001077 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000790
GO:GO:0001942 GO:GO:0001946 GO:GO:0060836 GO:GO:0043534
GO:GO:0001570 GO:GO:0001947 GO:GO:0003151 GO:GO:0042789
GO:GO:0048469 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
GO:GO:0061028 EMBL:AL355803 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 KO:K09270 HOGENOM:HOG000069999 HOVERGEN:HBG000517
GO:GO:0048866 EMBL:AJ243896 EMBL:AB033888 EMBL:AF270652
EMBL:BC038590 EMBL:BC073971 EMBL:BC111390 EMBL:X65664
IPI:IPI00020428 PIR:S22941 RefSeq:NP_060889.1 UniGene:Hs.8619
ProteinModelPortal:P35713 SMR:P35713 IntAct:P35713 STRING:P35713
PhosphoSite:P35713 DMDM:12644232 PaxDb:P35713 PRIDE:P35713
Ensembl:ENST00000340356 GeneID:54345 KEGG:hsa:54345 UCSC:uc002yhs.3
CTD:54345 GeneCards:GC20M062679 HGNC:HGNC:11194 MIM:601618
MIM:607823 neXtProt:NX_P35713 Orphanet:69735 PharmGKB:PA36031
eggNOG:NOG252325 InParanoid:P35713 OMA:YLNCSRT OrthoDB:EOG4KSPKP
GenomeRNAi:54345 NextBio:56587 Bgee:P35713 CleanEx:HS_SOX18
Genevestigator:P35713 GermOnline:ENSG00000203883 GO:GO:0022405
Uniprot:P35713
Length = 384
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 55 HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPR------AKRLRKKDSDSNK 108
H + D + A + A + P +R P S EP A R ++ +D ++
Sbjct: 26 HGAAADTRGLAAGPAALAAPAAPASPPSP-QRSPPRSPEPGRYGLSPAGRGERQAADESR 84
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
+RP AF ++ D RK + +PD ++K G+ WK + EK+P++++A L+
Sbjct: 85 IRRPMNAFMVWAKDERKRLAQQNPDLHNAV-LSKMLGKAWKELNAAEKRPFVEEAERLRV 143
Query: 169 DY 170
+
Sbjct: 144 QH 145
>UNIPROTKB|E1BL97 [details] [associations]
symbol:SOX13 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
OMA:TMVNCTV EMBL:DAAA02041911 IPI:IPI00825051
Ensembl:ENSBTAT00000010692 Uniprot:E1BL97
Length = 622
Score = 118 (46.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
+S+ KRP AF ++ D R++ +A PD + ++K G +WK+M+++EK+PY ++ A
Sbjct: 420 NSSHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMSNQEKQPYYEEQA 478
Query: 165 ELKADYSKAMEGNGDY 180
L + +E DY
Sbjct: 479 RLSRQH---LEKYPDY 491
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 3 SSSKSNAPKPRKRVDAQSASTSSATL 28
S S +P+PR+ +++AS S L
Sbjct: 77 SLENSESPEPRRPGGSEAASGSQEKL 102
>UNIPROTKB|Q90ZH8 [details] [associations]
symbol:sox18-a "Transcription factor Sox-18A" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0006355 GO:GO:0043565 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P48431 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
KO:K09270 EMBL:AB052692 EMBL:BC169575 RefSeq:NP_001082102.1
UniGene:Xl.11958 ProteinModelPortal:Q90ZH8 SMR:Q90ZH8 GeneID:398226
KEGG:xla:398226 CTD:398226 Xenbase:XB-GENE-864957 Uniprot:Q90ZH8
Length = 363
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 69 AQVVEKPAEINKKKPAERKKPTSTEPRA--KRLRKKDSDSNKPKRPPTAFFLFMDDFRKE 126
A V + + I PA S +P +K D + +RP AF ++ D RK
Sbjct: 27 ADTVPEVSLIPSSPPAPDSPAPSPKPGYGFSTCEEKHGDP-RIRRPMNAFMVWAKDERKR 85
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
+ +PD ++K G+ WKN+T EK+P++++A L+ +
Sbjct: 86 LAQQNPDLHNAV-LSKMLGQSWKNLTSVEKRPFVEEAERLRVQH 128
>RGD|1309000 [details] [associations]
symbol:Sox6 "SRY (sex determining region Y)-box 6" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000902 "cell morphogenesis" evidence=ISO] [GO:0001701 "in
utero embryonic development" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0009791 "post-embryonic
development" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016458 "gene silencing"
evidence=ISO] [GO:0021778 "oligodendrocyte cell fate specification"
evidence=ISO] [GO:0030097 "hemopoiesis" evidence=ISO] [GO:0030218
"erythrocyte differentiation" evidence=ISO] [GO:0032332 "positive
regulation of chondrocyte differentiation" evidence=ISO]
[GO:0035051 "cardiocyte differentiation" evidence=ISO] [GO:0042692
"muscle cell differentiation" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045165 "cell fate commitment" evidence=ISO] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048708 "astrocyte
differentiation" evidence=IMP] [GO:0048709 "oligodendrocyte
differentiation" evidence=ISO] [GO:0048821 "erythrocyte
development" evidence=ISO] [GO:0051216 "cartilage development"
evidence=ISO] [GO:0061036 "positive regulation of cartilage
development" evidence=ISO] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=ISO] [GO:2000741
"positive regulation of mesenchymal stem cell differentiation"
evidence=ISO] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
RGD:1309000 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0048708 HOVERGEN:HBG003915 KO:K09269
HOGENOM:HOG000056455 eggNOG:NOG253815 CTD:55553
PANTHER:PTHR10270:SF89 IPI:IPI00371181 EMBL:BC097403
RefSeq:NP_001019922.1 UniGene:Rn.76073 ProteinModelPortal:Q4V8G3
SMR:Q4V8G3 STRING:Q4V8G3 GeneID:293165 KEGG:rno:293165
UCSC:RGD:1309000 NextBio:635493 Genevestigator:Q4V8G3
Uniprot:Q4V8G3
Length = 787
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 560 TVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 618
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 619 KSMSNQEKQPYYEEQARL 636
>UNIPROTKB|I3LMN8 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9823
"Sus scrofa" [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005634 GO:GO:0030154 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GeneTree:ENSGT00690000101940 GO:GO:0030238 PANTHER:PTHR10270:SF48
EMBL:FQ311950 Ensembl:ENSSSCT00000030781 Uniprot:I3LMN8
Length = 208
Score = 111 (44.1 bits), Expect = 0.00014, P = 0.00014
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
+S + R R ++S ++ KRP AF ++ D R++ +P + + ++K G KWK
Sbjct: 43 SSKDGRETRGSGRESGQDRVKRPMNAFIVWSRDQRRKVALENPQMQN-SEISKWLGCKWK 101
Query: 150 NMTDEEKKPYLDKAAELKA 168
+T+ EK+P+ ++A L+A
Sbjct: 102 MLTEAEKRPFFEEAQRLQA 120
>MGI|MGI:98368 [details] [associations]
symbol:Sox6 "SRY-box containing gene 6" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP;IDA] [GO:0000902 "cell
morphogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IGI;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005667
"transcription factor complex" evidence=IC] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0016458 "gene
silencing" evidence=IMP] [GO:0021778 "oligodendrocyte cell fate
specification" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0030218 "erythrocyte differentiation"
evidence=IMP] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=ISO;IDA] [GO:0035051 "cardiocyte
differentiation" evidence=IDA] [GO:0042692 "muscle cell
differentiation" evidence=IDA] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IDA] [GO:0045165 "cell fate commitment"
evidence=IGI] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0048708 "astrocyte differentiation" evidence=ISO]
[GO:0048709 "oligodendrocyte differentiation" evidence=IMP]
[GO:0048821 "erythrocyte development" evidence=IMP] [GO:0051216
"cartilage development" evidence=IGI] [GO:0061036 "positive
regulation of cartilage development" evidence=ISO] [GO:0071560
"cellular response to transforming growth factor beta stimulus"
evidence=ISO] [GO:2000741 "positive regulation of mesenchymal stem
cell differentiation" evidence=ISO] InterPro:IPR009071
InterPro:IPR027153 MGI:MGI:98368 Pfam:PF00505 GO:GO:0071560
GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0005667 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0042692 GO:GO:0009791 GO:GO:0000902 GO:GO:0032332
GO:GO:0051216 GO:GO:0048821 GO:GO:0016458 GO:GO:0035051
GO:GO:0061036 GO:GO:0021778 HOVERGEN:HBG003915 KO:K09269
HOGENOM:HOG000056455 eggNOG:NOG253815 GO:GO:2000741 CTD:55553
OMA:FENLGPQ ChiTaRS:SOX6 PANTHER:PTHR10270:SF89 EMBL:U32614
EMBL:D61689 EMBL:AJ010605 EMBL:X65659 IPI:IPI00620986
IPI:IPI00623688 PIR:S22944 PIR:S59121 RefSeq:NP_035575.1
UniGene:Mm.323365 ProteinModelPortal:P40645 SMR:P40645
IntAct:P40645 STRING:P40645 PhosphoSite:P40645 PRIDE:P40645
Ensembl:ENSMUST00000072804 Ensembl:ENSMUST00000166207 GeneID:20679
KEGG:mmu:20679 UCSC:uc009jin.1 InParanoid:P40645 OrthoDB:EOG4N8R45
NextBio:299177 Bgee:P40645 CleanEx:MM_SOX6 Genevestigator:P40645
GermOnline:ENSMUSG00000051910 Uniprot:P40645
Length = 827
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 600 TVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 658
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 659 KSMSNQEKQPYYEEQARL 676
>UNIPROTKB|P35712 [details] [associations]
symbol:SOX6 "Transcription factor SOX-6" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0016458 "gene silencing" evidence=IEA]
[GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA]
[GO:0035051 "cardiocyte differentiation" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0048821 "erythrocyte
development" evidence=IEA] [GO:0051216 "cartilage development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0007517 "muscle
organ development" evidence=NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IDA] [GO:0061036 "positive regulation of
cartilage development" evidence=IDA] [GO:0071560 "cellular response
to transforming growth factor beta stimulus" evidence=IDA]
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
GO:GO:0005634 EMBL:CH471064 GO:GO:0071560 GO:GO:0003677
GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0042692
GO:GO:0009791 GO:GO:0007517 GO:GO:0000902 GO:GO:0032332
GO:GO:0051216 GO:GO:0048821 GO:GO:0016458 GO:GO:0035051
GO:GO:0061036 GO:GO:0021778 HOVERGEN:HBG003915 KO:K09269
HOGENOM:HOG000056455 eggNOG:NOG253815 GO:GO:2000741 EMBL:AF309034
EMBL:AF309476 EMBL:AF309471 EMBL:AF309472 EMBL:AF309473
EMBL:AF309474 EMBL:AF309475 EMBL:AL136780 EMBL:AC009869
EMBL:AC013595 EMBL:AC027016 EMBL:AC068405 EMBL:AC103794
EMBL:BC037866 EMBL:BC047064 EMBL:X65663 IPI:IPI00218631
IPI:IPI00641980 IPI:IPI00872738 IPI:IPI00926649
RefSeq:NP_001139283.1 RefSeq:NP_001139291.1 RefSeq:NP_059978.1
RefSeq:NP_201583.2 UniGene:Hs.368226 ProteinModelPortal:P35712
SMR:P35712 IntAct:P35712 STRING:P35712 PhosphoSite:P35712
DMDM:215274178 PaxDb:P35712 PRIDE:P35712 DNASU:55553
Ensembl:ENST00000316399 Ensembl:ENST00000352083
Ensembl:ENST00000396356 Ensembl:ENST00000527619
Ensembl:ENST00000528252 Ensembl:ENST00000528429 GeneID:55553
KEGG:hsa:55553 UCSC:uc001mmd.3 UCSC:uc001mme.3 UCSC:uc001mmf.3
UCSC:uc001mmg.3 CTD:55553 GeneCards:GC11M015949 HGNC:HGNC:16421
HPA:HPA001923 HPA:HPA003908 MIM:607257 neXtProt:NX_P35712
PharmGKB:PA38137 InParanoid:P35712 OMA:FENLGPQ ChiTaRS:SOX6
GenomeRNAi:55553 NextBio:60012 ArrayExpress:P35712 Bgee:P35712
CleanEx:HS_SOX6 Genevestigator:P35712 GermOnline:ENSG00000110693
PANTHER:PTHR10270:SF89 Uniprot:P35712
Length = 828
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 601 TVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 659
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 660 KSMSNQEKQPYYEEQARL 677
>UNIPROTKB|F6RRS7 [details] [associations]
symbol:SOX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072091 "regulation of stem cell proliferation"
evidence=IEA] [GO:0061028 "establishment of endothelial barrier"
evidence=IEA] [GO:0060956 "endocardial cell differentiation"
evidence=IEA] [GO:0060836 "lymphatic endothelial cell
differentiation" evidence=IEA] [GO:0060214 "endocardium formation"
evidence=IEA] [GO:0048866 "stem cell fate specification"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043534 "blood vessel endothelial cell migration"
evidence=IEA] [GO:0035050 "embryonic heart tube development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001946 "lymphangiogenesis" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0045892 GO:GO:0043565 GO:GO:0001701 GO:GO:0045944
GO:GO:0003700 GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942
GO:GO:0001946 GO:GO:0060836 GO:GO:0043534 GO:GO:0001570
GO:GO:0048469 GO:GO:0035050 GO:GO:0072091 GO:GO:0060956
GO:GO:0060214 GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 GeneTree:ENSGT00670000097649 GO:GO:0048866
OMA:YLNCSRT EMBL:DAAA02036216 EMBL:DAAA02036215 IPI:IPI00717042
Ensembl:ENSBTAT00000015485 Uniprot:F6RRS7
Length = 388
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 86 RKKPTSTEPR------AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
R P S EP A R ++ +D ++ +RP AF ++ D RK + +PD
Sbjct: 55 RSPPRSPEPGRYGLSPAGRGERQGTDESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAV- 113
Query: 140 VAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
++K G+ WK ++ EK+P++++A L+ +
Sbjct: 114 LSKMLGKAWKELSPAEKRPFVEEAERLRVQH 144
>UNIPROTKB|E1BE01 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
"positive regulation of cartilage development" evidence=IEA]
[GO:0051216 "cartilage development" evidence=IEA] [GO:0048821
"erythrocyte development" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0035051 "cardiocyte differentiation"
evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IEA] [GO:0021778 "oligodendrocyte cell
fate specification" evidence=IEA] [GO:0016458 "gene silencing"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000902 "cell morphogenesis" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR009071
InterPro:IPR027153 Pfam:PF00505 GO:GO:0005634 GO:GO:0071560
GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0042692 GO:GO:0009791
GO:GO:0000902 GO:GO:0032332 GO:GO:0051216 GO:GO:0048821
GO:GO:0016458 GO:GO:0035051 GO:GO:0061036 GO:GO:0021778
GeneTree:ENSGT00690000101789 KO:K09269 GO:GO:2000741 CTD:55553
OMA:FENLGPQ PANTHER:PTHR10270:SF89 EMBL:DAAA02040602
EMBL:DAAA02040603 EMBL:DAAA02040604 EMBL:DAAA02040605
EMBL:DAAA02040606 EMBL:DAAA02040607 EMBL:DAAA02040608
EMBL:DAAA02040609 EMBL:DAAA02040610 EMBL:DAAA02040611
EMBL:DAAA02040612 IPI:IPI01000762 RefSeq:NP_001178347.1
UniGene:Bt.62052 Ensembl:ENSBTAT00000061473 GeneID:534321
KEGG:bta:534321 NextBio:20876354 Uniprot:E1BE01
Length = 841
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 614 TVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 672
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 673 KSMSNQEKQPYYEEQARL 690
>ZFIN|ZDB-GENE-980526-333 [details] [associations]
symbol:sox3 "SRY-box containing gene 3"
species:7955 "Danio rerio" [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0043049 "otic
placode formation" evidence=IGI;IMP] [GO:0007422 "peripheral
nervous system development" evidence=IGI;IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-980526-333
GO:GO:0005634 GO:GO:0051091 GO:GO:0030182 GO:GO:0003677
GO:GO:0007422 GO:GO:0007417 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
GeneTree:ENSGT00690000101940 OrthoDB:EOG45MN6C GO:GO:0043049
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 CTD:6658 EMBL:AY316135 EMBL:AB242330
EMBL:AB117960 EMBL:BX088596 EMBL:BC092845 IPI:IPI00551951
RefSeq:NP_001001811.2 UniGene:Dr.104569 ProteinModelPortal:Q6EJB7
SMR:Q6EJB7 STRING:Q6EJB7 Ensembl:ENSDART00000075617 GeneID:30529
KEGG:dre:30529 InParanoid:Q6EJB7 OMA:NNSANDP NextBio:20806912
ArrayExpress:Q6EJB7 Bgee:Q6EJB7 Uniprot:Q6EJB7
Length = 300
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D ++ KRP AF ++ R++ + +P + ++K G WK +TD EK+P++D+A
Sbjct: 30 NDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLTDAEKRPFIDEA 88
Query: 164 AELKADYSK 172
L+A + K
Sbjct: 89 KRLRAMHMK 97
>UNIPROTKB|Q5FWM3 [details] [associations]
symbol:sox3-b "Transcription factor Sox-3-B" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0001704
"formation of primary germ layer" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008013 "beta-catenin binding" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0008013
GO:GO:0001704 HSSP:P48432 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 EMBL:BC089283 EMBL:X65654 RefSeq:NP_001166875.1
UniGene:Xl.37985 ProteinModelPortal:Q5FWM3 SMR:Q5FWM3 GeneID:398329
KEGG:xla:398329 CTD:398329 Uniprot:Q5FWM3
Length = 307
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 26/98 (26%), Positives = 50/98 (51%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKDS--DSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
+ + K P ++ S P + S D ++ KRP AF ++ R++ + +P
Sbjct: 6 DTDMKSPVQQSNALSGGPGTPGGKGNTSTPDQDRVKRPMNAFMVWSRGQRRKMAQENPKM 65
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+ ++K G WK ++D EK+P++D+A L+A + K
Sbjct: 66 HN-SEISKRLGADWKLLSDSEKRPFIDEAKRLRAVHMK 102
>UNIPROTKB|P48433 [details] [associations]
symbol:SOX3 "Transcription factor SOX-3" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000979
"RNA polymerase II core promoter sequence-specific DNA binding"
evidence=ISS] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISS] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IMP] [GO:0060324
"face development" evidence=ISS] [GO:0007423 "sensory organ
development" evidence=ISS] [GO:0021983 "pituitary gland
development" evidence=ISS] [GO:0021854 "hypothalamus development"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007423 GO:GO:0045665
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0060324 GO:GO:0021983 GO:GO:0000979 GO:GO:0001106
GO:GO:0021854 UniGene:Gga.3795 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 EMBL:U12467 IPI:IPI00586970 PIR:I50705
ProteinModelPortal:P48433 SMR:P48433 Uniprot:P48433
Length = 312
Score = 114 (45.2 bits), Expect = 0.00017, P = 0.00017
Identities = 29/107 (27%), Positives = 55/107 (51%)
Query: 67 LEAQV-VEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRK 125
LE ++ +P + +PA + T+ A SD ++ KRP AF ++ R+
Sbjct: 5 LETEIKTPQPTRAARGEPA--RAATAKVGGAAAADGCRSDQDRVKRPMNAFMVWSRGQRR 62
Query: 126 EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+ + +P + ++K G WK ++D EK+P++D+A L+A + K
Sbjct: 63 KMAQENPKMHN-SEISKRLGADWKLLSDAEKRPFIDEAKRLRAVHMK 108
>UNIPROTKB|Q0P5K4 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
Uniprot:Q0P5K4
Length = 619
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRK-KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
E ++ P+++ + K +K K D N+P++P +A+ LF D + K +P++
Sbjct: 190 EFRRQPPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT 249
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
V+K W ++ +E+K+ Y K K +Y KA+ D E + + D A
Sbjct: 250 -FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVDMDPA 308
>UNIPROTKB|F1NAU5 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0016458 "gene silencing" evidence=IEA]
[GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=IEA] [GO:0035051 "cardiocyte differentiation"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0048821 "erythrocyte development" evidence=IEA] [GO:0051216
"cartilage development" evidence=IEA] [GO:0061036 "positive
regulation of cartilage development" evidence=IEA] [GO:0071560
"cellular response to transforming growth factor beta stimulus"
evidence=IEA] [GO:2000741 "positive regulation of mesenchymal stem
cell differentiation" evidence=IEA] InterPro:IPR009071
InterPro:IPR027153 Pfam:PF00505 GO:GO:0005634 GO:GO:0071560
GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0032332 GO:GO:0045165 GO:GO:0016458
GO:GO:0061036 GeneTree:ENSGT00690000101789 GO:GO:2000741
OMA:FENLGPQ PANTHER:PTHR10270:SF89 EMBL:AADN02030483
EMBL:AADN02030484 EMBL:AADN02030485 EMBL:AADN02030486
EMBL:AADN02030487 EMBL:AADN02030488 EMBL:AADN02030489
EMBL:AADN02030490 EMBL:AADN02030491 EMBL:AADN02030492
EMBL:AADN02030493 EMBL:AADN02030494 EMBL:AADN02030495
EMBL:AADN02030496 EMBL:AADN02030497 EMBL:AADN02030498
EMBL:AADN02030499 EMBL:AADN02030500 EMBL:AADN02030501
EMBL:AADN02030502 EMBL:AADN02030503 EMBL:AADN02030504
EMBL:AADN02030505 IPI:IPI00597024 Ensembl:ENSGALT00000009804
Uniprot:F1NAU5
Length = 783
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 90 TSTEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
T E R R R + S KRP AF ++ D R++ +A PD + ++K G +W
Sbjct: 556 TVAEARVYRDSRGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRW 614
Query: 149 KNMTDEEKKPYLDKAAEL 166
K+M+++EK+PY ++ A L
Sbjct: 615 KSMSNQEKQPYYEEQARL 632
>RGD|3927 [details] [associations]
symbol:Ubtf "upstream binding transcription factor, RNA polymerase
I" species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0045943 "positive regulation of transcription from
RNA polymerase I promoter" evidence=ISO;ISS] InterPro:IPR009071
Pfam:PF00505 RGD:3927 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000183 Pfam:PF09011 GO:GO:0045943 KO:K09273 eggNOG:NOG327891
HOVERGEN:HBG008708 CTD:7343 HOGENOM:HOG000232068 OMA:CSQRWKL
OrthoDB:EOG4V9TQ9 EMBL:M61726 EMBL:M61725 IPI:IPI00194555
IPI:IPI00388681 PIR:A40439 PIR:B40439 RefSeq:NP_001099193.2
RefSeq:NP_001121162.1 UniGene:Rn.22469 ProteinModelPortal:P25977
SMR:P25977 STRING:P25977 PhosphoSite:P25977 PRIDE:P25977
Ensembl:ENSRNOT00000048418 Ensembl:ENSRNOT00000064283 GeneID:25574
KEGG:rno:25574 UCSC:RGD:3927 GeneTree:ENSGT00530000063934
InParanoid:P25977 NextBio:607201 ArrayExpress:P25977
Genevestigator:P25977 GermOnline:ENSRNOG00000020937 Uniprot:P25977
Length = 764
Score = 120 (47.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 37/150 (24%), Positives = 73/150 (48%)
Query: 28 LMRGRDGSAF-ARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAER 86
L+ ++ A+ +C++ K+ V L+ SL + + + + EK INKK+
Sbjct: 334 LLSQKEKDAYHKKCDQKKKDYEVELLRFLE-SLPEEEQQRVLGE--EKMLNINKKQTTS- 389
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
P S +P + + S KPKRP +A F+F ++ R++ +E P+ + + +
Sbjct: 390 --PASKKPSQEGGK---GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE-SELTRLLAR 443
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
W ++++++K Y + A LKA + G
Sbjct: 444 MWNDLSEKKKAKYKAREAALKAQSERKPGG 473
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/57 (17%), Positives = 24/57 (42%)
Query: 175 EGNGDYNEVEDKADNEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEENLDD 231
E + D ++ E++ D+E D +E+ + + + D+E+ D+
Sbjct: 683 EEDDDDDDEEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEDDDDDEDDDEDDDE 739
>UNIPROTKB|Q5I921 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9823
"Sus scrofa" [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005634 GO:GO:0030154 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GeneTree:ENSGT00690000101940 GO:GO:0030238 CTD:6736
HOVERGEN:HBG008712 KO:K09266 OMA:QSYASAM PANTHER:PTHR10270:SF48
EMBL:FP565153 EMBL:AY842532 EMBL:AY842533 EMBL:AY842535
EMBL:GU991615 EMBL:GU143100 EMBL:GU143101 EMBL:GU143102
EMBL:GU143104 EMBL:GU143105 EMBL:GU143106 EMBL:GU143107
EMBL:GU143108 EMBL:GU143123 EMBL:GU143124 EMBL:GU143127
EMBL:GU143128 EMBL:GU143129 EMBL:GU143130 EMBL:GU143131
EMBL:GU143132 EMBL:GU143136 EMBL:GU143137 EMBL:GU143138
EMBL:GU143139 EMBL:GU143143 EMBL:GU143147 EMBL:GU143148
EMBL:GU143152 EMBL:GU143153 EMBL:GU143154 EMBL:GU143155
EMBL:GU143156 EMBL:GU143157 EMBL:GU143158 EMBL:GU143159
EMBL:GU143160 EMBL:GU143161 EMBL:GU143164 EMBL:GU143165
EMBL:GU143168 EMBL:GU143169 EMBL:GU143172 EMBL:GU143173
EMBL:GU143178 EMBL:GU143186 EMBL:GU143187 EMBL:GU143188
EMBL:GU143189 EMBL:GU143190 EMBL:GU143191 EMBL:GU143196
EMBL:GU143198 EMBL:GU143199 EMBL:GU143200 EMBL:GU143202
EMBL:GU143204 EMBL:GU143205 EMBL:GU143206 EMBL:GU143207
EMBL:GU143210 EMBL:GU143211 EMBL:GU143212 EMBL:GU143213
EMBL:GU143220 EMBL:GU143221 EMBL:GU143223 EMBL:GU143224
EMBL:GU143229 EMBL:GU143230 EMBL:GU143232 EMBL:GU143233
EMBL:GU143234 EMBL:GU143235 EMBL:GU143236 EMBL:GU143237
EMBL:GU143241 EMBL:GU143242 EMBL:GU143243 EMBL:GU143244
EMBL:GU143246 EMBL:GU143249 RefSeq:XP_003360585.1 SMR:Q5I921
Ensembl:ENSSSCT00000027478 GeneID:100625818 KEGG:ssc:100625818
Uniprot:Q5I921
Length = 236
Score = 111 (44.1 bits), Expect = 0.00020, P = 0.00020
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
+S + R R ++S ++ KRP AF ++ D R++ +P + + ++K G KWK
Sbjct: 43 SSKDGRETRGSGRESGQDRVKRPMNAFIVWSRDQRRKVALENPQMQN-SEISKWLGCKWK 101
Query: 150 NMTDEEKKPYLDKAAELKA 168
+T+ EK+P+ ++A L+A
Sbjct: 102 MLTEAEKRPFFEEAQRLQA 120
>UNIPROTKB|J3QKX6 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000582955
Uniprot:J3QKX6
Length = 129
Score = 94 (38.1 bits), Expect = 0.00021, P = 0.00021
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 108 KPKRPPTAFFL-FMDDFRK---EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
KP +PP + +M RK + K ++PD K + + K G W+++TDEEK+ YL++
Sbjct: 61 KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLK-LWEIGKIIGGMWRDLTDEEKQEYLNEY 119
Query: 164 AELKADYSKA 173
K +Y+++
Sbjct: 120 EAEKIEYNES 129
>UNIPROTKB|F1NJ38 [details] [associations]
symbol:F1NJ38 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00690000101789 OMA:TMVNCTV EMBL:AADN02044887
EMBL:AADN02044888 IPI:IPI00584532 Ensembl:ENSGALT00000000813
Uniprot:F1NJ38
Length = 491
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 30/99 (30%), Positives = 50/99 (50%)
Query: 83 PAERKKPTSTE-PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
P E K T PR + + ++N KRP AF ++ D R++ +A PD + ++
Sbjct: 273 PCEGKDGGDTHTPRTRHF-PESRNNNHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSIS 330
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
K + W MT++EK+PY ++ A L + +E DY
Sbjct: 331 KILTQLWGGMTNQEKQPYYEEQARLSRQH---LEKYPDY 366
>UNIPROTKB|O42569 [details] [associations]
symbol:sox2 "Transcription factor Sox-2" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007399
"nervous system development" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 KO:K09267
InterPro:IPR022097 Pfam:PF12336 HOVERGEN:HBG105663 CTD:6657
EMBL:AF005476 EMBL:AF022928 EMBL:BC076717 RefSeq:NP_001081691.1
UniGene:Xl.188 ProteinModelPortal:O42569 SMR:O42569 DIP:DIP-29886N
GeneID:398000 KEGG:xla:398000 Xenbase:XB-GENE-865099 Uniprot:O42569
Length = 311
Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
Identities = 26/96 (27%), Positives = 51/96 (53%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
E K PA ++ A + K+S ++ KRP AF ++ R++ + +P
Sbjct: 6 ETELKPPAPQQPSGGNSNSASNNQNKNSP-DRVKRPMNAFMVWSRGQRRKMAQENPKMHN 64
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+ ++K G +WK +++ EK+P++D+A L+A + K
Sbjct: 65 -SEISKRLGAEWKLLSEAEKRPFIDEAKRLRALHMK 99
>UNIPROTKB|I3LAV9 [details] [associations]
symbol:TOX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000785 "chromatin"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
OMA:PPTLKMQ EMBL:CU695044 RefSeq:XP_001929153.1 UniGene:Ssc.97365
Ensembl:ENSSSCT00000027379 GeneID:100152681 KEGG:ssc:100152681
Uniprot:I3LAV9
Length = 620
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRK-KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
E ++ P+++ + K +K K D N+P++P +A+ LF D + K +P++
Sbjct: 190 EFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT 249
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
V+K W ++ +E+K+ Y K K +Y KA+ D E + + D A
Sbjct: 250 -FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPA 308
>UNIPROTKB|Q9PSV6 [details] [associations]
symbol:Sox3 "SOX3" species:9031 "Gallus gallus" [GO:0000979
"RNA polymerase II core promoter sequence-specific DNA binding"
evidence=IEA] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IEA] [GO:0007423 "sensory organ
development" evidence=IEA] [GO:0007530 "sex determination"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0021854 "hypothalamus development" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0048515 "spermatid
differentiation" evidence=IEA] [GO:0060009 "Sertoli cell
development" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000979
GO:GO:0001106 UniGene:Gga.3795 GeneTree:ENSGT00690000101940
HSSP:P48432 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
Pfam:PF12336 HOVERGEN:HBG105663 CTD:6658 OMA:AQSYMNV
EMBL:AADN02013475 EMBL:AB011803 EMBL:AB753847 IPI:IPI00820761
RefSeq:NP_989526.1 SMR:Q9PSV6 STRING:Q9PSV6
Ensembl:ENSGALT00000011718 GeneID:374019 KEGG:gga:374019
InParanoid:Q9PSV6 NextBio:20813546 Uniprot:Q9PSV6
Length = 316
Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
SD ++ KRP AF ++ R++ + +P + ++K G WK ++D EK+P++D+A
Sbjct: 43 SDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLSDAEKRPFIDEA 101
Query: 164 AELKADYSK 172
L+A + K
Sbjct: 102 KRLRAVHMK 110
>UNIPROTKB|Q03255 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:2000020 "positive regulation of male
gonad development" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0007548 "sex
differentiation" evidence=IEA] [GO:0005516 "calmodulin binding"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005737 GO:GO:0007423 GO:GO:0016607
GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0009887 GO:GO:0060009 GO:GO:0060324
GO:GO:0021983 GO:GO:0000979 GO:GO:0001106 GO:GO:0021854
GO:GO:0048515 GeneTree:ENSGT00690000101940 GO:GO:2000020
GO:GO:0030238 EMBL:Z30327 EMBL:U15569 EMBL:AB039748 EMBL:DQ336526
EMBL:EU233320 EMBL:EU294189 EMBL:Z18808 EMBL:S71489 IPI:IPI00716700
PIR:S34113 RefSeq:NP_001014407.1 UniGene:Bt.90486
ProteinModelPortal:Q03255 SMR:Q03255 Ensembl:ENSBTAT00000062957
GeneID:280931 KEGG:bta:280931 CTD:6736 HOVERGEN:HBG008712 KO:K09266
OMA:QSYASAM NextBio:20805048 PANTHER:PTHR10270:SF48 Uniprot:Q03255
Length = 229
Score = 110 (43.8 bits), Expect = 0.00024, P = 0.00024
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
++S + KRP AF ++ + R++ +P K + ++K+ G +WK +TD EK+P+ +
Sbjct: 47 RESSQDHVKRPMNAFIVWSRERRRKVALENPKMKN-SDISKQLGYEWKRLTDAEKRPFFE 105
Query: 162 KAAELKA 168
+A L A
Sbjct: 106 EAQRLLA 112
>UNIPROTKB|P40649 [details] [associations]
symbol:sox13 "Transcription factor Sox-13" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0043565
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:9580 HOVERGEN:HBG003915 KO:K09269 EMBL:D50552
EMBL:BC068647 EMBL:X65655 PIR:S71466 RefSeq:NP_001081238.1
UniGene:Xl.13036 ProteinModelPortal:P40649 SMR:P40649 GeneID:397727
KEGG:xla:397727 Xenbase:XB-GENE-865496 Uniprot:P40649
Length = 567
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
S N KRP AF ++ D R++ +A PD + ++K G +WK+M++ EK+PY ++
Sbjct: 387 SRGNHIKRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMSNGEKQPYYEEQ 445
Query: 164 AELKADYSKAMEGNGDY 180
A L + +E DY
Sbjct: 446 ARLSRQH---LERYPDY 459
>ASPGD|ASPL0000054741 [details] [associations]
symbol:AN10103 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR009071 Pfam:PF00505 EMBL:BN001308
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EnsemblFungi:CADANIAT00002264 HOGENOM:HOG000211356 OMA:LRLYNAR
Uniprot:C8VTF1
Length = 297
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 37/110 (33%), Positives = 52/110 (47%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEY-KEAHPDSKGVTGVAKEAGEKW 148
+ E K+ RK+ +D N PKR T FFL+M R +E PD+K V+ E +W
Sbjct: 82 SGAESGEKKKRKRRADPNAPKRTLTPFFLYMHHNRARIAEELGPDAKP-KDVSNEGTRRW 140
Query: 149 KNMTDEEK----KPYLDKAA---ELKADYSKAMEGNGDYNEVEDKADNEV 191
M D +K K Y D A E A Y + + D N DKA +++
Sbjct: 141 AEMPDSQKEVWKKLYADNLAAYREKVAAYKAGLPFDRDDN---DKAADQL 187
>UNIPROTKB|Q90ZH7 [details] [associations]
symbol:sox18-b "Transcription factor Sox-18B" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
"heart development" evidence=IMP] [GO:0030178 "negative regulation
of Wnt receptor signaling pathway" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007507 GO:GO:0006355
GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178 HSSP:P48431
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270
EMBL:AB052693 EMBL:BC072123 RefSeq:NP_001082104.1 UniGene:Xl.11959
ProteinModelPortal:Q90ZH7 SMR:Q90ZH7 GeneID:398227 KEGG:xla:398227
CTD:398227 Xenbase:XB-GENE-6251810 Uniprot:Q90ZH7
Length = 361
Score = 113 (44.8 bits), Expect = 0.00029, P = 0.00029
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
+RP AF ++ D RK + +PD ++K G+ WKN+T EK+P++++A L+
Sbjct: 67 RRPMNAFMVWAKDERKRLAQQNPDLHNAV-LSKMLGQSWKNLTSAEKRPFVEEAERLRVQ 125
Query: 170 Y 170
+
Sbjct: 126 H 126
>UNIPROTKB|Q9XT60 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9615
"Canis lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0007548 "sex differentiation"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005737 GO:GO:0030154 GO:GO:0003677
GO:GO:0016607 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GO:GO:0030238 HOVERGEN:HBG008712 PANTHER:PTHR10270:SF48
EMBL:AF107021 ProteinModelPortal:Q9XT60 SMR:Q9XT60 Uniprot:Q9XT60
Length = 220
Score = 109 (43.4 bits), Expect = 0.00029, P = 0.00029
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
+DS N+ +RP AF ++ D R++ +P + + ++K+ G +WK +T+ EK P+ +
Sbjct: 46 RDSGRNRVRRPMNAFLVWSRDQRRKMALENPQMQN-SEISKQLGYQWKMLTEAEKWPFFE 104
Query: 162 KAAELKA 168
+A L+A
Sbjct: 105 EAQRLQA 111
>FB|FBgn0005613 [details] [associations]
symbol:Sox15 "Sox box protein 15" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS;IDA;NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0035220 "wing disc
development" evidence=IGI;IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0022416 "chaeta development" evidence=IGI;IMP] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IGI] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0043066 GO:GO:0008285
GO:GO:0003677 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0022416
GO:GO:0035220 eggNOG:NOG242943 GeneTree:ENSGT00670000097649
EMBL:AJ250955 EMBL:BT022122 EMBL:BT025204 EMBL:X65668 PIR:S22936
RefSeq:NP_523739.2 UniGene:Dm.2578 ProteinModelPortal:P40657
SMR:P40657 DIP:DIP-21090N MINT:MINT-990874 STRING:P40657
PRIDE:P40657 EnsemblMetazoa:FBtr0087576 GeneID:36575
KEGG:dme:Dmel_CG8404 CTD:6665 FlyBase:FBgn0005613 InParanoid:P40657
OMA:KESRIRR OrthoDB:EOG4MCVFC PhylomeDB:P40657 GenomeRNAi:36575
NextBio:799285 Bgee:P40657 GermOnline:CG8404 Uniprot:P40657
Length = 784
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 33/138 (23%), Positives = 67/138 (48%)
Query: 31 GRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERK-KP 89
G G + E+C + P+ SM S + +E+ +K PA+ K +P
Sbjct: 148 GMVGGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAP-NCGYLER----HKPLPADLKYRP 202
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
T+ K + ++ +RP AF ++ RK+ + +PD ++K G+KW+
Sbjct: 203 GGTQ-------SKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNAD-LSKMLGKKWR 254
Query: 150 NMTDEEKKPYLDKAAELK 167
++T ++++PY+++A L+
Sbjct: 255 SLTPQDRRPYVEEAERLR 272
>WB|WBGene00004949 [details] [associations]
symbol:sox-2 species:6239 "Caenorhabditis elegans"
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0040035 eggNOG:NOG321816 GeneTree:ENSGT00690000101940
HSSP:P48432 KO:K09267 EMBL:FO080256 PIR:T16581 RefSeq:NP_741836.1
ProteinModelPortal:Q21305 SMR:Q21305 STRING:Q21305 PaxDb:Q21305
PRIDE:Q21305 EnsemblMetazoa:K08A8.2a.1 EnsemblMetazoa:K08A8.2a.2
GeneID:181002 KEGG:cel:CELE_K08A8.2 UCSC:K08A8.2a.1 CTD:181002
WormBase:K08A8.2a HOGENOM:HOG000020950 InParanoid:Q21305
OMA:AQNIQNA NextBio:911930 ArrayExpress:Q21305 Uniprot:Q21305
Length = 283
Score = 111 (44.1 bits), Expect = 0.00031, P = 0.00031
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 89 PTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
P S + K +K D ++ KRP AF ++ RK+ +P + ++K G +W
Sbjct: 43 PDSPDSTGKDGKKND---DRVKRPMNAFMVWSRGQRKKMALENPKMHN-SEISKRLGTEW 98
Query: 149 KNMTDEEKKPYLDKAAELKADYSK 172
K ++++EK+P++D+A L+A + K
Sbjct: 99 KMLSEQEKRPFIDEAKRLRAIHMK 122
>ZFIN|ZDB-GENE-010111-1 [details] [associations]
symbol:sox19b "SRY-box containing gene 19b"
species:7955 "Danio rerio" [GO:0005667 "transcription factor
complex" evidence=IC] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-010111-1
GO:GO:0051091 GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
InterPro:IPR022097 Pfam:PF12336 EMBL:CR848737 IPI:IPI00495401
Ensembl:ENSDART00000058910 ArrayExpress:F1R211 Bgee:F1R211
Uniprot:F1R211
Length = 293
Score = 111 (44.1 bits), Expect = 0.00034, P = 0.00034
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
+K KRP AF ++ R++ + +P + ++K G +WK +TD EK+P++D+A L
Sbjct: 51 DKVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLTDVEKRPFIDEAKRL 109
Query: 167 KADYSK 172
+A + K
Sbjct: 110 RAVHMK 115
>DICTYBASE|DDB_G0282427 [details] [associations]
symbol:DDB_G0282427 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00184 SMART:SM00249 dictyBase:DDB_G0282427 Pfam:PF00505
EMBL:AAFI02000047 GO:GO:0046872 GO:GO:0008270 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 RefSeq:XP_640043.1 ProteinModelPortal:Q54SJ6
EnsemblProtists:DDB0220651 GeneID:8623570 KEGG:ddi:DDB_G0282427
InParanoid:Q54SJ6 OMA:YMNINRE Uniprot:Q54SJ6
Length = 795
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
R K++ ++ +P+ +A+F +M+ R++ K +PD ++ ++K G KWK +T +
Sbjct: 313 RKKKIEEEIEAIVRPRSNVSAYFHYMNINREDEKRMNPDVP-LSDISKILGAKWKQLTPD 371
Query: 155 EKKPYLDKAAELKADYSKAME-GNGDYNEVED 185
++K Y +KA E K Y M N EVE+
Sbjct: 372 DQKEYYEKAREDKIRYENEMVLYNQKCKEVEN 403
>MGI|MGI:98365 [details] [associations]
symbol:Sox3 "SRY-box containing gene 3" species:10090 "Mus
musculus" [GO:0000979 "RNA polymerase II core promoter
sequence-specific DNA binding" evidence=IDA] [GO:0001106 "RNA
polymerase II transcription corepressor activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007423 "sensory organ development"
evidence=IMP] [GO:0007530 "sex determination" evidence=ISO;IMP]
[GO:0009887 "organ morphogenesis" evidence=IMP] [GO:0021854
"hypothalamus development" evidence=IMP] [GO:0021983 "pituitary
gland development" evidence=IMP] [GO:0030900 "forebrain
development" evidence=IMP] [GO:0048515 "spermatid differentiation"
evidence=IMP] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR009071 MGI:MGI:98365 Pfam:PF00505 GO:GO:0005634
GO:GO:0007423 GO:GO:0045665 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0009887 GO:GO:0060009
GO:GO:0060324 GO:GO:0021983 GO:GO:0000979 GO:GO:0001106
GO:GO:0021854 GO:GO:0048515 eggNOG:NOG321816 GO:GO:0007530
HOGENOM:HOG000231647 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 EMBL:X94125 EMBL:AF434675 EMBL:AB108674
IPI:IPI00986516 PIR:S10948 UniGene:Mm.35784
ProteinModelPortal:P53784 SMR:P53784 STRING:P53784
PhosphoSite:P53784 PRIDE:P53784 InParanoid:Q80XF1 ChiTaRS:SOX3
Bgee:P53784 CleanEx:MM_SOX3 Genevestigator:P53784
GermOnline:ENSMUSG00000045179 Uniprot:P53784
Length = 375
Score = 112 (44.5 bits), Expect = 0.00041, P = 0.00041
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
SD ++ KRP AF ++ R++ +P + ++K G WK +TD EK+P++D+A
Sbjct: 64 SDQDRVKRPMNAFMVWSRGQRRKMALENPKMHN-SEISKRLGADWKLLTDAEKRPFIDEA 122
Query: 164 AELKADYSK 172
L+A + K
Sbjct: 123 KRLRAVHMK 131
>WB|WBGene00012209 [details] [associations]
symbol:hmg-20 species:6239 "Caenorhabditis elegans"
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0045132 GeneTree:ENSGT00700000104521
eggNOG:NOG241877 EMBL:Z81137 PIR:T26108 RefSeq:NP_493178.1
ProteinModelPortal:Q9XVG8 SMR:Q9XVG8 DIP:DIP-26554N IntAct:Q9XVG8
MINT:MINT-1062441 STRING:Q9XVG8 EnsemblMetazoa:W02D9.3
GeneID:173124 KEGG:cel:CELE_W02D9.3 UCSC:W02D9.3 CTD:173124
WormBase:W02D9.3 HOGENOM:HOG000018682 InParanoid:Q9XVG8 OMA:PIFTPEF
NextBio:878359 Uniprot:Q9XVG8
Length = 386
Score = 112 (44.5 bits), Expect = 0.00043, P = 0.00043
Identities = 37/177 (20%), Positives = 78/177 (44%)
Query: 1 MPSSS-KSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSL 59
+P+S + + P + +++ ++S + + R + + + P AL HS +
Sbjct: 17 LPTSDVEEDEAAPDLKAESEDVTSSEEMQNKNPVSAPEKRAKTASFSPPPALSPAHSIQM 76
Query: 60 D-AKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFL 118
+ +I++ +E E+ ++ K K +P ++ D N PKR + +
Sbjct: 77 ENEEIEVKMEVDSDEEEKKLPKITEKRAKMVYKKKPEKEKEAVPFIDPNAPKRNRSGYVH 136
Query: 119 FMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
F+ R Y +A + + ++ A W+ +T EE+ P+ +A E K Y + ME
Sbjct: 137 FIIHRRASYSKAVMSQREIN-ISLAAD--WQKLTAEERIPFQQRADEEKVKYLELME 190
>ZFIN|ZDB-GENE-040718-186 [details] [associations]
symbol:sox1a "SRY-box containing gene 1a"
species:7955 "Danio rerio" [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IC] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-040718-186
GO:GO:0007275 GO:GO:0051091 GO:GO:0003677 GO:GO:0006351
GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 eggNOG:NOG321816 GeneTree:ENSGT00690000101940
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
EMBL:AB242327 EMBL:CR392332 EMBL:BC076326 EMBL:BC096992
IPI:IPI00492442 RefSeq:NP_001002483.1 UniGene:Dr.6453
ProteinModelPortal:Q6DGL6 SMR:Q6DGL6 STRING:Q6DGL6
Ensembl:ENSDART00000102021 GeneID:436756 KEGG:dre:436756 CTD:436756
HOVERGEN:HBG105663 InParanoid:Q6DGL6 OMA:MHRYDMT OrthoDB:EOG40K80R
NextBio:20831193 Bgee:Q6DGL6 Uniprot:Q6DGL6
Length = 336
Score = 111 (44.1 bits), Expect = 0.00044, P = 0.00044
Identities = 25/96 (26%), Positives = 49/96 (51%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
+++ P P T P + +D + KRP AF ++ R++ + +P
Sbjct: 9 DLHSPGPQTNTNPGQTGPNSGSKANQD----RVKRPMNAFMVWSRGQRRKMAQENPKMHN 64
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+ ++K G +WK M++ EK+P++D+A L+A + K
Sbjct: 65 -SEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMK 99
>RGD|620474 [details] [associations]
symbol:Sox9 "SRY-box containing gene 9" species:10116 "Rattus
norvegicus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IDA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO;IDA] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0001502 "cartilage
condensation" evidence=IMP] [GO:0001708 "cell fate specification"
evidence=IMP] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IMP] [GO:0001894 "tissue homeostasis" evidence=IMP]
[GO:0001934 "positive regulation of protein phosphorylation"
evidence=IMP;IDA] [GO:0001942 "hair follicle development"
evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
proliferation" evidence=IMP] [GO:0002063 "chondrocyte development"
evidence=IMP] [GO:0002683 "negative regulation of immune system
process" evidence=IMP] [GO:0003170 "heart valve development"
evidence=IMP] [GO:0003179 "heart valve morphogenesis" evidence=IMP]
[GO:0003188 "heart valve formation" evidence=IMP] [GO:0003203
"endocardial cushion morphogenesis" evidence=IMP] [GO:0003413
"chondrocyte differentiation involved in endochondral bone
morphogenesis" evidence=ISO] [GO:0003415 "chondrocyte hypertrophy"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO;IMP;IDA]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=ISO;IDA]
[GO:0004672 "protein kinase activity" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0006461 "protein complex assembly"
evidence=ISO] [GO:0007165 "signal transduction" evidence=IMP]
[GO:0007173 "epidermal growth factor receptor signaling pathway"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IGI]
[GO:0007507 "heart development" evidence=IMP] [GO:0008013
"beta-catenin binding" evidence=IPI] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO;IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0008584 "male gonad development" evidence=ISO;IGI;IMP]
[GO:0010564 "regulation of cell cycle process" evidence=ISO]
[GO:0010628 "positive regulation of gene expression" evidence=IGI]
[GO:0010634 "positive regulation of epithelial cell migration"
evidence=ISO;ISS] [GO:0014032 "neural crest cell development"
evidence=IMP] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019100
"male germ-line sex determination" evidence=IMP] [GO:0019933
"cAMP-mediated signaling" evidence=ISO] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0030155 "regulation of cell
adhesion" evidence=IMP] [GO:0030198 "extracellular matrix
organization" evidence=IMP] [GO:0030238 "male sex determination"
evidence=IGI] [GO:0030279 "negative regulation of ossification"
evidence=IMP] [GO:0030502 "negative regulation of bone
mineralization" evidence=IMP] [GO:0030858 "positive regulation of
epithelial cell differentiation" evidence=IMP] [GO:0030916 "otic
vesicle formation" evidence=IMP] [GO:0031018 "endocrine pancreas
development" evidence=IMP] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=IMP] [GO:0032332 "positive
regulation of chondrocyte differentiation" evidence=ISO;IMP;IDA]
[GO:0034236 "protein kinase A catalytic subunit binding"
evidence=ISO] [GO:0035019 "somatic stem cell maintenance"
evidence=IMP] [GO:0035326 "enhancer binding" evidence=ISO;IDA]
[GO:0035622 "intrahepatic bile duct development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IDA] [GO:0045165 "cell fate commitment" evidence=IGI]
[GO:0045595 "regulation of cell differentiation" evidence=IMP]
[GO:0045662 "negative regulation of myoblast differentiation"
evidence=IDA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;IMP;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;IMP;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP;IDA] [GO:0046533 "negative regulation of
photoreceptor cell differentiation" evidence=IGI] [GO:0048709
"oligodendrocyte differentiation" evidence=IMP] [GO:0050679
"positive regulation of epithelial cell proliferation"
evidence=IMP] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IMP] [GO:0051216 "cartilage development"
evidence=IEP;IMP;TAS] [GO:0060008 "Sertoli cell differentiation"
evidence=IMP] [GO:0060009 "Sertoli cell development" evidence=IGI]
[GO:0060018 "astrocyte fate commitment" evidence=IGI] [GO:0060041
"retina development in camera-type eye" evidence=IGI] [GO:0060221
"retinal rod cell differentiation" evidence=IGI] [GO:0060350
"endochondral bone morphogenesis" evidence=IMP] [GO:0060512
"prostate gland morphogenesis" evidence=IMP] [GO:0060517
"epithelial cell proliferation involved in prostatic bud
elongation" evidence=IMP] [GO:0060729 "intestinal epithelial
structure maintenance" evidence=IMP] [GO:0060784 "regulation of
cell proliferation involved in tissue homeostasis" evidence=IMP]
[GO:0061036 "positive regulation of cartilage development"
evidence=ISO;IDA] [GO:0061138 "morphogenesis of a branching
epithelium" evidence=IGI] [GO:0070168 "negative regulation of
biomineral tissue development" evidence=IMP] [GO:0070371 "ERK1 and
ERK2 cascade" evidence=IDA] [GO:0071260 "cellular response to
mechanical stimulus" evidence=IDA] [GO:0071300 "cellular response
to retinoic acid" evidence=IDA] [GO:0071364 "cellular response to
epidermal growth factor stimulus" evidence=IDA] [GO:0071504
"cellular response to heparin" evidence=IDA] [GO:0071560 "cellular
response to transforming growth factor beta stimulus" evidence=ISO]
[GO:0072034 "renal vesicle induction" evidence=IMP] [GO:0072197
"ureter morphogenesis" evidence=IGI] [GO:0072289 "metanephric
nephron tubule formation" evidence=IGI] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IDA] [GO:0090103 "cochlea morphogenesis" evidence=IMP]
[GO:0090184 "positive regulation of kidney development"
evidence=IGI] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=IMP] [GO:2000020
"positive regulation of male gonad development" evidence=ISO]
[GO:2000138 "positive regulation of cell proliferation involved in
heart morphogenesis" evidence=IMP] [GO:2000741 "positive regulation
of mesenchymal stem cell differentiation" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:620474 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0051216 InterPro:IPR022151 Pfam:PF12444 HSSP:P48432
IPI:IPI00392284 EMBL:AB073720 UniGene:Rn.95086
ProteinModelPortal:Q91WY3 STRING:Q91WY3 HOVERGEN:HBG098066
Genevestigator:Q91WY3 Uniprot:Q91WY3
Length = 164
Score = 103 (41.3 bits), Expect = 0.00047, P = 0.00047
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 99 LRKKDSDSNKP--KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+R S NKP KRP AF ++ R++ + +P ++K G+ W+ + + EK
Sbjct: 78 VRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAE-LSKTLGKLWRLLNESEK 136
Query: 157 KPYLDKAAELKADYSK 172
+P++++A L+ + K
Sbjct: 137 RPFVEEAERLRVQHRK 152
>UNIPROTKB|B4DPY8 [details] [associations]
symbol:TOX4 "cDNA FLJ54372, highly similar to Epidermal
Langerhans cell protein LCP1" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL161747 EMBL:AE000658 HOVERGEN:HBG051013 UniGene:Hs.555910
HGNC:HGNC:20161 ChiTaRS:TOX4 EMBL:AK298555 IPI:IPI00879111
SMR:B4DPY8 STRING:B4DPY8 Ensembl:ENST00000448790 UCSC:uc010tlu.2
Uniprot:B4DPY8
Length = 598
Score = 114 (45.2 bits), Expect = 0.00047, P = 0.00047
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
+A + RKK D N+P++P +A+ LF D + K +P++ V+K W ++ +E
Sbjct: 187 KAPKKRKK-KDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSLGEE 244
Query: 155 EKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
+K+ Y K K +Y KA+ D E + + D A
Sbjct: 245 QKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPA 285
>ZFIN|ZDB-GENE-051113-268 [details] [associations]
symbol:sox14 "SRY-box containing gene 14"
species:7955 "Danio rerio" [GO:0021854 "hypothalamus development"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 ZFIN:ZDB-GENE-051113-268 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 HSSP:P48431 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 EMBL:BC108033 IPI:IPI00511312 RefSeq:NP_001032769.1
UniGene:Dr.52424 ProteinModelPortal:Q32PP9 SMR:Q32PP9 STRING:Q32PP9
Ensembl:ENSDART00000104532 GeneID:557661 KEGG:dre:557661
InParanoid:Q32PP9 OMA:LGCPSQH NextBio:20882094 Bgee:Q32PP9
Uniprot:Q32PP9
Length = 238
Score = 108 (43.1 bits), Expect = 0.00048, P = 0.00048
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A L+A
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSESEKRPYIDEAKRLRAQ 67
Query: 170 YSK 172
+ K
Sbjct: 68 HMK 70
>UNIPROTKB|Q9W7R6 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 GO:GO:0006351 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AB026622 EMBL:AF193760 EMBL:M86326 IPI:IPI00585113 PIR:I50196
RefSeq:NP_990092.1 UniGene:Gga.286 ProteinModelPortal:Q9W7R6
SMR:Q9W7R6 STRING:Q9W7R6 GeneID:395526 KEGG:gga:395526 CTD:8403
eggNOG:NOG302715 HOGENOM:HOG000231647 HOVERGEN:HBG105618
InParanoid:Q9W7R6 KO:K09267 OrthoDB:EOG47D9H0 NextBio:20815603
InterPro:IPR022097 Pfam:PF12336 Uniprot:Q9W7R6
Length = 240
Score = 108 (43.1 bits), Expect = 0.00049, P = 0.00049
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S+ KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A
Sbjct: 5 SDHIKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 166 LKADYSK 172
L+A + K
Sbjct: 64 LRAQHMK 70
>UNIPROTKB|O95416 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007399
"nervous system development" evidence=TAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0007399 EMBL:CH471052 GO:GO:0043565 GO:GO:0006351
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:8403 eggNOG:NOG302715 HOGENOM:HOG000231647
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 OMA:LGCPSQH EMBL:AF107043 EMBL:AJ006230 EMBL:AF193436
EMBL:AK314127 EMBL:BC106729 EMBL:BC106730 EMBL:AF032451
IPI:IPI00030676 RefSeq:NP_004180.1 UniGene:Hs.248184
ProteinModelPortal:O95416 SMR:O95416 STRING:O95416
PhosphoSite:O95416 PRIDE:O95416 Ensembl:ENST00000306087 GeneID:8403
KEGG:hsa:8403 UCSC:uc003erm.2 GeneCards:GC03P137483 HGNC:HGNC:11193
MIM:604747 neXtProt:NX_O95416 PharmGKB:PA36030 InParanoid:O95416
PhylomeDB:O95416 GenomeRNAi:8403 NextBio:31446 Bgee:O95416
CleanEx:HS_SOX14 Genevestigator:O95416 GermOnline:ENSG00000168875
Uniprot:O95416
Length = 240
Score = 108 (43.1 bits), Expect = 0.00049, P = 0.00049
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S+ KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A
Sbjct: 5 SDHIKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 166 LKADYSK 172
L+A + K
Sbjct: 64 LRAQHMK 70
>UNIPROTKB|P61259 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9541
"Macaca fascicularis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG105618
InterPro:IPR022097 Pfam:PF12336 EMBL:AB063098
ProteinModelPortal:P61259 SMR:P61259 Uniprot:P61259
Length = 240
Score = 108 (43.1 bits), Expect = 0.00049, P = 0.00049
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S+ KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A
Sbjct: 5 SDHIKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 166 LKADYSK 172
L+A + K
Sbjct: 64 LRAQHMK 70
>MGI|MGI:98362 [details] [associations]
symbol:Sox14 "SRY-box containing gene 14" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
MGI:MGI:98362 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 eggNOG:NOG302715
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 OMA:LGCPSQH
EMBL:AF193437 EMBL:AF193435 EMBL:AF182357 EMBL:Z18963
IPI:IPI00929882 PIR:S30244 RefSeq:NP_035570.1 UniGene:Mm.261595
UniGene:Mm.484077 ProteinModelPortal:Q04892 SMR:Q04892
STRING:Q04892 PhosphoSite:Q04892 PRIDE:Q04892
Ensembl:ENSMUST00000054819 GeneID:20669 KEGG:mmu:20669
InParanoid:Q04892 NextBio:299141 Bgee:Q04892 CleanEx:MM_SOX14
Genevestigator:Q04892 Uniprot:Q04892
Length = 240
Score = 108 (43.1 bits), Expect = 0.00049, P = 0.00049
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S+ KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A
Sbjct: 5 SDHIKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 166 LKADYSK 172
L+A + K
Sbjct: 64 LRAQHMK 70
>RGD|1309654 [details] [associations]
symbol:Sox14 "SRY (sex determining region Y)-box 14"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
Pfam:PF00505 RGD:1309654 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH473954 CTD:8403
HOVERGEN:HBG105618 KO:K09267 OMA:LGCPSQH EMBL:EU853677
IPI:IPI00870866 RefSeq:NP_001100320.1 UniGene:Rn.141574 SMR:B7SZV3
GeneID:300954 KEGG:rno:300954 UCSC:RGD:1309654 NextBio:647780
Genevestigator:B7SZV3 Uniprot:B7SZV3
Length = 240
Score = 108 (43.1 bits), Expect = 0.00049, P = 0.00049
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S+ KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A
Sbjct: 5 SDHIKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 166 LKADYSK 172
L+A + K
Sbjct: 64 LRAQHMK 70
>UNIPROTKB|Q6NVN0 [details] [associations]
symbol:sox2 "Transcription factor Sox-2" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
GO:GO:0051091 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0031101 OrthoDB:EOG4MPHQV
GeneTree:ENSGT00690000101940 GO:GO:0048592 HSSP:P48432
eggNOG:NOG302715 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
Pfam:PF12336 CTD:6657 EMBL:CR760314 EMBL:BC067975
RefSeq:NP_998869.1 UniGene:Str.6201 ProteinModelPortal:Q6NVN0
SMR:Q6NVN0 Ensembl:ENSXETT00000004031 GeneID:407873 KEGG:xtr:407873
Xenbase:XB-GENE-484553 InParanoid:Q6NVN0 OMA:SAHNAPQ Bgee:Q6NVN0
Uniprot:Q6NVN0
Length = 311
Score = 110 (43.8 bits), Expect = 0.00049, P = 0.00049
Identities = 25/96 (26%), Positives = 51/96 (53%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
E + K PA ++ + K+S ++ KRP AF ++ R++ + +P
Sbjct: 6 ETDLKPPAPQQASGGNSNSGSNNQSKNSP-DRVKRPMNAFMVWSRGQRRKMAQENPKMHN 64
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+ ++K G +WK +++ EK+P++D+A L+A + K
Sbjct: 65 -SEISKRLGAEWKLLSEAEKRPFIDEAKRLRALHMK 99
>UNIPROTKB|O94842 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000785 "chromatin"
evidence=IDA] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P EMBL:AB018280 EMBL:BC013689
IPI:IPI00006586 RefSeq:NP_055643.1 UniGene:Hs.555910
ProteinModelPortal:O94842 SMR:O94842 IntAct:O94842
MINT:MINT-1193640 STRING:O94842 PhosphoSite:O94842 PaxDb:O94842
PeptideAtlas:O94842 PRIDE:O94842 DNASU:9878 Ensembl:ENST00000262709
Ensembl:ENST00000405508 GeneID:9878 KEGG:hsa:9878 UCSC:uc001way.3
GeneCards:GC14P021944 HGNC:HGNC:20161 HPA:HPA017880 HPA:HPA027551
MIM:614032 neXtProt:NX_O94842 PharmGKB:PA162406753
InParanoid:O94842 PhylomeDB:O94842 ChiTaRS:TOX4 GenomeRNAi:9878
NextBio:37229 ArrayExpress:O94842 Bgee:O94842 CleanEx:HS_TOX4
Genevestigator:O94842 GermOnline:ENSG00000092203 Uniprot:O94842
Length = 621
Score = 114 (45.2 bits), Expect = 0.00050, P = 0.00050
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
+A + RKK D N+P++P +A+ LF D + K +P++ V+K W ++ +E
Sbjct: 210 KAPKKRKK-KDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSLGEE 267
Query: 155 EKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
+K+ Y K K +Y KA+ D E + + D A
Sbjct: 268 QKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPA 308
>UNIPROTKB|Q5R6A9 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9601 "Pongo abelii" [GO:0072357 "PTW/PP1 phosphatase
complex" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357 HOGENOM:HOG000230949
HSSP:Q66JW3 CTD:9878 HOVERGEN:HBG051013 OrthoDB:EOG4JT05P
EMBL:CR860582 EMBL:CR861113 RefSeq:NP_001126876.1
RefSeq:NP_001128875.1 UniGene:Pab.18544 UniGene:Pab.19683
GeneID:100173889 GeneID:100189804 KEGG:pon:100173889
KEGG:pon:100189804 Uniprot:Q5R6A9
Length = 621
Score = 114 (45.2 bits), Expect = 0.00050, P = 0.00050
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
+A + RKK D N+P++P +A+ LF D + K +P++ V+K W ++ +E
Sbjct: 210 KAPKKRKK-KDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSLGEE 267
Query: 155 EKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
+K+ Y K K +Y KA+ D E + + D A
Sbjct: 268 QKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPA 308
>UNIPROTKB|B3DLD3 [details] [associations]
symbol:sox18 "Transcription factor Sox-18" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007507 "heart development" evidence=ISS] [GO:0030178 "negative
regulation of Wnt receptor signaling pathway" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
GO:GO:0006355 GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:54345
EMBL:BC167402 RefSeq:NP_001123409.1 UniGene:Str.78926
GeneID:100170185 KEGG:xtr:100170185 Xenbase:XB-GENE-483233
Uniprot:B3DLD3
Length = 362
Score = 111 (44.1 bits), Expect = 0.00050, P = 0.00050
Identities = 27/104 (25%), Positives = 49/104 (47%)
Query: 69 AQVVEKPAEINKKKPAERKKPTSTEPRA--KRLRKKDSDSNKPKRPPTAFFLFMDDFRKE 126
A V + + PA S +P +K D + +RP AF ++ D RK
Sbjct: 27 ADTVPETSPTPSSPPAPDSPTPSPQPGYGYSPCEEKPGDP-RIRRPMNAFMVWAKDERKR 85
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
+ +PD ++K G+ WKN++ EK+P++++A L+ +
Sbjct: 86 LAQQNPDLHNAV-LSKMLGQSWKNLSSAEKRPFVEEAERLRVQH 128
>UNIPROTKB|E2R800 [details] [associations]
symbol:SOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060324 "face development" evidence=IEA]
[GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0048515
"spermatid differentiation" evidence=IEA] [GO:0021983 "pituitary
gland development" evidence=IEA] [GO:0021854 "hypothalamus
development" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0007530 "sex determination" evidence=IEA]
[GO:0007423 "sensory organ development" evidence=IEA] [GO:0001106
"RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0000979 "RNA polymerase II core promoter
sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0007423 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0009887 GO:GO:0060009
GO:GO:0060324 GO:GO:0021983 GO:GO:0000979 GO:GO:0001106
GO:GO:0021854 GO:GO:0048515 GeneTree:ENSGT00690000101940
GO:GO:0007530 KO:K09267 InterPro:IPR022097 Pfam:PF12336 CTD:6658
OMA:AQSYMNV EMBL:AAEX03026974 RefSeq:XP_852934.1
Ensembl:ENSCAFT00000030220 GeneID:492178 KEGG:cfa:492178
NextBio:20864806 Uniprot:E2R800
Length = 444
Score = 112 (44.5 bits), Expect = 0.00053, P = 0.00053
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
SD ++ KRP AF ++ R++ +P + ++K G WK +TD EK+P++D+A
Sbjct: 134 SDQDRVKRPMNAFMVWSRGQRRKMALENPKMHN-SEISKRLGADWKLLTDAEKRPFIDEA 192
Query: 164 AELKADYSK 172
L+A + K
Sbjct: 193 KRLRAVHMK 201
>UNIPROTKB|I3LG51 [details] [associations]
symbol:LOC100623770 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0060324 "face development" evidence=IEA]
[GO:0060009 "Sertoli cell development" evidence=IEA] [GO:0048515
"spermatid differentiation" evidence=IEA] [GO:0021983 "pituitary
gland development" evidence=IEA] [GO:0021854 "hypothalamus
development" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0007530 "sex determination" evidence=IEA]
[GO:0007423 "sensory organ development" evidence=IEA] [GO:0001106
"RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0000979 "RNA polymerase II core promoter
sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0007423 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0009887 GO:GO:0060009
GO:GO:0060324 GO:GO:0021983 GO:GO:0000979 GO:GO:0001106
GO:GO:0021854 GO:GO:0048515 GeneTree:ENSGT00690000101940
GO:GO:0007530 KO:K09267 InterPro:IPR022097 Pfam:PF12336 OMA:PDPPAHR
EMBL:CU856631 RefSeq:XP_003360512.1 Ensembl:ENSSSCT00000024126
GeneID:100623770 KEGG:ssc:100623770 Uniprot:I3LG51
Length = 448
Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
SD ++ KRP AF ++ R++ +P + ++K G WK +TD EK+P++D+A
Sbjct: 137 SDQDRVKRPMNAFMVWSRGQRRKMALENPKMHN-SEISKRLGADWKLLTDAEKRPFIDEA 195
Query: 164 AELKADYSK 172
L+A + K
Sbjct: 196 KRLRAVHMK 204
>UNIPROTKB|Q28EW4 [details] [associations]
symbol:sox13 "Transcription factor Sox-13" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0006355
GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
CTD:9580 eggNOG:NOG275089 KO:K09269 HOGENOM:HOG000056455
EMBL:CR762311 RefSeq:NP_001017004.1 UniGene:Str.11026
ProteinModelPortal:Q28EW4 SMR:Q28EW4 Ensembl:ENSXETT00000064129
GeneID:549758 KEGG:xtr:549758 Xenbase:XB-GENE-481889 Bgee:Q28EW4
Uniprot:Q28EW4
Length = 566
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
KRP AF ++ D R++ +A PD + ++K G +WK+M++ EK+PY ++ A L
Sbjct: 379 KRPMNAFMVWAKDERRKILQAFPDMHN-SSISKILGSRWKSMSNAEKQPYYEEQARLSRQ 437
Query: 170 YSKAMEGNGDY 180
+ +E DY
Sbjct: 438 H---LERYPDY 445
>UNIPROTKB|A4QNG3 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OMA:LGCPSQH EMBL:AM922298
EMBL:BC135637 RefSeq:NP_001093703.1 UniGene:Str.72434
ProteinModelPortal:A4QNG3 SMR:A4QNG3 STRING:A4QNG3
Ensembl:ENSXETT00000049107 GeneID:100101715 KEGG:xtr:100101715
Xenbase:XB-GENE-485370 Bgee:A4QNG3 Uniprot:A4QNG3
Length = 239
Score = 107 (42.7 bits), Expect = 0.00063, P = 0.00063
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A L+A
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 170 YSK 172
+ K
Sbjct: 68 HMK 70
>UNIPROTKB|B0ZTE2 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0007399 "nervous
system development" evidence=IEP] [GO:0043565 "sequence-specific
DNA binding" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 KO:K09267 EMBL:EU403425
RefSeq:NP_001165685.1 UniGene:Xl.85736 ProteinModelPortal:B0ZTE2
SMR:B0ZTE2 GeneID:100337614 KEGG:xla:100337614
Xenbase:XB-GENE-6458188 Uniprot:B0ZTE2
Length = 239
Score = 107 (42.7 bits), Expect = 0.00063, P = 0.00063
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
KRP AF ++ R++ + +P + ++K G +WK +++ EK+PY+D+A L+A
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQ 67
Query: 170 YSK 172
+ K
Sbjct: 68 HMK 70
>UNIPROTKB|Q68FA4 [details] [associations]
symbol:sox3 "Transcription factor Sox-3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0001704 "formation of primary germ layer" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0008013 "beta-catenin binding" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0051091 GO:GO:0030182 GO:GO:0043565
GO:GO:0007422 GO:GO:0007417 GO:GO:0003700 GO:GO:0006351
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0008013 eggNOG:NOG321816
GeneTree:ENSGT00690000101940 OrthoDB:EOG45MN6C GO:GO:0043049
GO:GO:0001704 HSSP:P48432 HOGENOM:HOG000231647 KO:K09267
InterPro:IPR022097 Pfam:PF12336 HOVERGEN:HBG105663 CTD:6658
EMBL:BC079938 RefSeq:NP_001007502.1 UniGene:Str.27268
ProteinModelPortal:Q68FA4 SMR:Q68FA4 STRING:Q68FA4
Ensembl:ENSXETT00000016558 GeneID:493228 KEGG:xtr:493228
Xenbase:XB-GENE-484815 InParanoid:Q68FA4 OMA:PDPPAHR Bgee:Q68FA4
Uniprot:Q68FA4
Length = 307
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + KRP AF ++ R++ + +P + ++K G WK ++D EK+P++D+A
Sbjct: 36 DQERVKRPMNAFMVWSRGQRRKMAQENPKMHN-SEISKRLGADWKLLSDSEKRPFIDEAK 94
Query: 165 ELKADYSK 172
L+A + K
Sbjct: 95 RLRAVHMK 102
>UNIPROTKB|F1NNF2 [details] [associations]
symbol:SOX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0021953 "central nervous system neuron differentiation"
evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045165 "cell fate
commitment" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0060164 "regulation of timing of neuron differentiation"
evidence=IEA] [GO:0061036 "positive regulation of cartilage
development" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:2000741
"positive regulation of mesenchymal stem cell differentiation"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0045892 GO:GO:0071560 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0032332 GO:GO:0045165 GO:GO:0061036
GeneTree:ENSGT00690000101789 OMA:PSEHSSM GO:GO:2000741
EMBL:AADN02006625 EMBL:AADN02006626 EMBL:AADN02006627
EMBL:AADN02006628 EMBL:AADN02006629 IPI:IPI00574856
Ensembl:ENSGALT00000037410 ArrayExpress:F1NNF2 Uniprot:F1NNF2
Length = 762
Score = 117 (46.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 92 TEPRAKRLRKKDSDSNKP--KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE-AGEKW 148
+E R R + SN+P KRP AF ++ D R++ +A PD + ++K AG +W
Sbjct: 536 SESRIYR-ESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILAGSRW 593
Query: 149 KNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
K MT+ EK+PY ++ A L + +E DY
Sbjct: 594 KAMTNLEKQPYYEEQARLSKQH---LEKYPDY 622
Score = 35 (17.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 179 DYNEVEDKADNEVEDKAEN 197
+Y+E ED D + +EN
Sbjct: 737 EYDEEEDDPDVDYGSDSEN 755
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 100 (40.3 bits), Expect = 0.00073, P = 0.00073
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 108 KPKRPPTAFFL-FMDDFRK---EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
KP +PP + +M RK + K ++PD K + + K G W+++TDEEK+ YL++
Sbjct: 43 KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLK-LWEIGKIIGGMWRDLTDEEKQEYLNEY 101
Query: 164 AELKADYSKAME 175
K +Y+++M+
Sbjct: 102 EAEKIEYNESMK 113
>MGI|MGI:2181659 [details] [associations]
symbol:Tox "thymocyte selection-associated high mobility
group box" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:2181659 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
HOGENOM:HOG000230949 HOVERGEN:HBG051183 eggNOG:NOG284736 CTD:9760
OMA:CRNPPAQ OrthoDB:EOG44XJGQ EMBL:AF472514 EMBL:AK029694
EMBL:AK038671 EMBL:AK051947 EMBL:BC080732 IPI:IPI00471452
IPI:IPI00754510 RefSeq:NP_663757.3 UniGene:Mm.435828
UniGene:Mm.488241 PDB:2CO9 PDBsum:2CO9 ProteinModelPortal:Q66JW3
SMR:Q66JW3 PhosphoSite:Q66JW3 PaxDb:Q66JW3 PRIDE:Q66JW3
Ensembl:ENSMUST00000039987 GeneID:252838 KEGG:mmu:252838
UCSC:uc008rxt.1 InParanoid:Q66JW3 ChiTaRS:TOX
EvolutionaryTrace:Q66JW3 NextBio:387345 Bgee:Q66JW3
Genevestigator:Q66JW3 GermOnline:ENSMUSG00000041272 Uniprot:Q66JW3
Length = 526
Score = 113 (44.8 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 32/106 (30%), Positives = 55/106 (51%)
Query: 73 EKPAEIN--KKKPAER--KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E ++IN +K+PA KKP + P+ +KK D N+P++P +A+ LF D + K
Sbjct: 227 EDASKINGGEKRPASDMGKKPKT--PK----KKKKKDPNEPQKPVSAYALFFRDTQAAIK 280
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+P++ V+K W + +E+K+ Y K K +Y K +
Sbjct: 281 GQNPNAT-FGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQL 325
Score = 35 (17.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 2 PSSSKSNAPKPRKRVDAQSASTSS 25
P SKS P P V +S
Sbjct: 207 PPGSKSATPSPSSSVHEDECEDAS 230
>UNIPROTKB|C9JSJ3 [details] [associations]
symbol:C9JSJ3 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR009071 InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:4.10.280.10 EMBL:AC074212
EMBL:AC007774 IPI:IPI00926374 ProteinModelPortal:C9JSJ3
PaxDb:C9JSJ3 Ensembl:ENST00000457052 UCSC:uc021uwa.1
eggNOG:NOG271265 OMA:VFYDSSE OrthoDB:EOG4D26QS Bgee:C9JSJ3
Uniprot:C9JSJ3
Length = 638
Score = 114 (45.2 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+K A + + + K +K K+ F +F RK+Y + P + T
Sbjct: 512 EKKATKGQVARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTAS-TAA 570
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185
KE + W+ MT +E++PY KA +++ ++ +G +E ED
Sbjct: 571 TKELAQLWRVMTQQERRPYCTKARRFSRQHNRIVKQDGSSSEAED 615
Score = 36 (17.7 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 3 SSSKSNAPKPRK 14
S S++ PKPR+
Sbjct: 185 SESQTRTPKPRR 196
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 106 (42.4 bits), Expect = 0.00088, P = 0.00088
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 93 EPRAKRLRKKDSDSN-------KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
E R +RL+KK KPKRP +A+ +++ + ++EA DS G K
Sbjct: 131 EARQRRLKKKALVKRRELILLGKPKRPRSAYNIYVSE---SFQEAKDDS--AQGKLKLVN 185
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAME 175
E WKN++ EEK+ Y+ A + + Y M+
Sbjct: 186 EAWKNLSPEEKQAYIQLAKDDRIRYDNEMK 215
>UNIPROTKB|O94900 [details] [associations]
symbol:TOX "Thymocyte selection-associated high mobility
group box protein TOX" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 HOGENOM:HOG000230949 HOVERGEN:HBG051183
eggNOG:NOG284736 EMBL:AB018351 EMBL:BC016665 IPI:IPI00006065
RefSeq:NP_055544.1 UniGene:Hs.491805 UniGene:Hs.634856
ProteinModelPortal:O94900 SMR:O94900 STRING:O94900
PhosphoSite:O94900 PaxDb:O94900 PRIDE:O94900 DNASU:9760
Ensembl:ENST00000361421 GeneID:9760 KEGG:hsa:9760 UCSC:uc003xtw.1
CTD:9760 GeneCards:GC08M059717 HGNC:HGNC:18988 HPA:HPA018322
MIM:606863 neXtProt:NX_O94900 PharmGKB:PA162406704
InParanoid:O94900 OMA:CRNPPAQ OrthoDB:EOG44XJGQ GenomeRNAi:9760
NextBio:36737 ArrayExpress:O94900 Bgee:O94900 CleanEx:HS_TOX
Genevestigator:O94900 GermOnline:ENSG00000198846 Uniprot:O94900
Length = 526
Score = 111 (44.1 bits), Expect = 0.00089, P = 0.00089
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 69 AQVVEKPAEINKKKPAERKKPTST---EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRK 125
+ V E + K K+P S +P+ + +KK D N+P++P +A+ LF D +
Sbjct: 219 SSVHEDEGDDTSKINGGEKRPASDMGKKPKTPK-KKKKKDPNEPQKPVSAYALFFRDTQA 277
Query: 126 EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
K +P++ V+K W + +E+K+ Y K K +Y K +
Sbjct: 278 AIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQL 325
>MGI|MGI:103559 [details] [associations]
symbol:Sox18 "SRY-box containing gene 18" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=ISO] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=IGI] [GO:0001568 "blood vessel
development" evidence=IMP] [GO:0001570 "vasculogenesis"
evidence=IGI] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0001944 "vasculature development" evidence=IMP] [GO:0001945
"lymph vessel development" evidence=IMP] [GO:0001946
"lymphangiogenesis" evidence=ISO;IMP] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IC;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0007507 "heart development" evidence=IMP]
[GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
"embryonic heart tube development" evidence=IGI] [GO:0042789 "mRNA
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISO;IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0048469 "cell maturation"
evidence=IDA] [GO:0048866 "stem cell fate specification"
evidence=IDA] [GO:0060214 "endocardium formation" evidence=IGI]
[GO:0060836 "lymphatic endothelial cell differentiation"
evidence=IMP] [GO:0060956 "endocardial cell differentiation"
evidence=IGI] [GO:0061028 "establishment of endothelial barrier"
evidence=ISO] [GO:0072091 "regulation of stem cell proliferation"
evidence=IDA] InterPro:IPR009071 MGI:MGI:103559 Pfam:PF00505
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043565
GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942 GO:GO:0001946
GO:GO:0060836 GO:GO:0043534 GO:GO:0001570 GO:GO:0048469
GO:GO:0035050 GO:GO:0072091 GO:GO:0060956 GO:GO:0060214
GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:L35032 EMBL:AF288518
EMBL:BC006612 EMBL:L29086 IPI:IPI00377924 RefSeq:NP_033262.2
UniGene:Mm.264904 ProteinModelPortal:P43680 SMR:P43680
STRING:P43680 PhosphoSite:P43680 PRIDE:P43680
Ensembl:ENSMUST00000054491 GeneID:20672 KEGG:mmu:20672
InParanoid:P43680 NextBio:299155 Bgee:P43680 CleanEx:MM_SOX18
Genevestigator:P43680 GermOnline:ENSMUSG00000046470 Uniprot:P43680
Length = 377
Score = 109 (43.4 bits), Expect = 0.00093, P = 0.00093
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 75 PAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
P+ + + P + P S R ++ +D + +RP AF ++ D RK + +PD
Sbjct: 48 PSSLPRSPP---RSPESGRYGFGRGERQTADELRIRRPMNAFMVWAKDERKRLAQQNPDL 104
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
++K G+ WK + EK+P++++A L+ +
Sbjct: 105 HNAV-LSKMLGKAWKELNTAEKRPFVEEAERLRVQH 139
>RGD|1311718 [details] [associations]
symbol:Sox18 "SRY (sex determining region Y)-box 18"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000978 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding" evidence=ISO] [GO:0001077 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding transcription factor
activity involved in positive regulation of transcription"
evidence=ISO] [GO:0001525 "angiogenesis" evidence=IEA;ISO]
[GO:0001568 "blood vessel development" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0001942 "hair follicle
development" evidence=IEA;ISO] [GO:0001944 "vasculature
development" evidence=ISO] [GO:0001945 "lymph vessel development"
evidence=ISO] [GO:0001946 "lymphangiogenesis" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0007507 "heart development"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0022405 "hair cycle process" evidence=ISO] [GO:0035050
"embryonic heart tube development" evidence=IEA;ISO] [GO:0042789
"mRNA transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0043534 "blood vessel endothelial cell migration"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0048469 "cell
maturation" evidence=IEA;ISO] [GO:0048866 "stem cell fate
specification" evidence=IEA;ISO] [GO:0060214 "endocardium
formation" evidence=IEA;ISO] [GO:0060836 "lymphatic endothelial
cell differentiation" evidence=IEA;ISO] [GO:0060956 "endocardial
cell differentiation" evidence=IEA;ISO] [GO:0061028 "establishment
of endothelial barrier" evidence=IEA;ISO] [GO:0072091 "regulation
of stem cell proliferation" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1311718 GO:GO:0005634 GO:GO:0045892 GO:GO:0043565
GO:GO:0001701 GO:GO:0045944 GO:GO:0003700 GO:GO:0001525
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0001942 GO:GO:0001946 GO:GO:0060836
GO:GO:0043534 GO:GO:0001570 GO:GO:0048469 GO:GO:0035050
GO:GO:0072091 GO:GO:0060956 GO:GO:0060214 GO:GO:0061028
EMBL:CH474066 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
HOVERGEN:HBG000517 GO:GO:0048866 CTD:54345 eggNOG:NOG252325
OMA:YLNCSRT OrthoDB:EOG4KSPKP EMBL:BC097973 IPI:IPI00211524
RefSeq:NP_001019952.1 UniGene:Rn.22446 SMR:Q4V7E4
Ensembl:ENSRNOT00000021790 GeneID:311723 KEGG:rno:311723
UCSC:RGD:1311718 InParanoid:Q4V7E4 NextBio:664090
Genevestigator:Q4V7E4 Uniprot:Q4V7E4
Length = 377
Score = 109 (43.4 bits), Expect = 0.00093, P = 0.00093
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 75 PAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
P+ + + P + P S R ++ +D + +RP AF ++ D RK + +PD
Sbjct: 48 PSSLPRSPP---RSPESGRYGFGRGERQTADELRIRRPMNAFMVWAKDERKRLAQQNPDL 104
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
++K G+ WK + EK+P++++A L+ +
Sbjct: 105 HNAV-LSKMLGKAWKELNTAEKRPFVEEAERLRVQH 139
>UNIPROTKB|G3MY76 [details] [associations]
symbol:CYLC1 "Cylicin-1" species:9913 "Bos taurus"
[GO:0043159 "acrosomal matrix" evidence=IEA] [GO:0005200
"structural constituent of cytoskeleton" evidence=IEA]
InterPro:IPR026189 GO:GO:0005200 GO:GO:0043159 PANTHER:PTHR16742
GeneTree:ENSGT00690000102102 EMBL:DAAA02072232 EMBL:DAAA02072233
Ensembl:ENSBTAT00000063918 OMA:NMDFILY Uniprot:G3MY76
Length = 666
Score = 112 (44.5 bits), Expect = 0.00094, P = 0.00094
Identities = 45/222 (20%), Positives = 94/222 (42%)
Query: 11 KPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQ 70
K K +D +S ST + + A + E C+KN + +H DA+ M +
Sbjct: 213 KDSKEMDFESTSTKKYSKSSKNNSDAVS--ETCSKNSSNVGLMVHLGESDAE-SMEFDMW 269
Query: 71 VVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDS-DSNKPKRPPTAFFLFMDDFRKEYKE 129
+ + ++ N KKP ++ + + DS D+ K K+ T D +K K+
Sbjct: 270 L-KNYSQNNSKKPTKKDAKKDAKGKGSDAESVDSKDAKKDKKGATK------DTKKGAKK 322
Query: 130 AHPDSKGVTGVAKEAGE-KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKAD 188
+ +G +K+A + K ++ D++K D A++ ++ SK + + + + K D
Sbjct: 323 DTESTDAESGDSKDAKKGKKESKKDKKKDAKKDAASDAESGDSKDAKKDSKKGKKDSKKD 382
Query: 189 NEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEENLD 230
N+ +D ++ +K+ ++D++ D
Sbjct: 383 NKKKDAKKDAESTDAESGDSKDAKKDSKKGKKDSKKDDKKKD 424
>UNIPROTKB|P35662 [details] [associations]
symbol:CYLC1 "Cylicin-1" species:9913 "Bos taurus"
[GO:0033150 "cytoskeletal calyx" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005200 "structural constituent of cytoskeleton"
evidence=IEA] InterPro:IPR026189 GO:GO:0007275 GO:GO:0030154
GO:GO:0005200 GO:GO:0007283 GO:GO:0033150 EMBL:Z22779
IPI:IPI00688728 PIR:A40713 RefSeq:NP_776727.1 UniGene:Bt.81
PRIDE:P35662 GeneID:281737 KEGG:bta:281737 CTD:1538
HOVERGEN:HBG081397 NextBio:20805657 PANTHER:PTHR16742
Uniprot:P35662
Length = 667
Score = 112 (44.5 bits), Expect = 0.00094, P = 0.00094
Identities = 45/222 (20%), Positives = 94/222 (42%)
Query: 11 KPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQ 70
K K +D +S ST + + A + E C+KN + +H DA+ M +
Sbjct: 214 KDSKEMDFESTSTKKYSKSSKNNSDAVS--ETCSKNSSNVGLMVHLGESDAE-SMEFDMW 270
Query: 71 VVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDS-DSNKPKRPPTAFFLFMDDFRKEYKE 129
+ + ++ N KKP ++ + + DS D+ K K+ T D +K K+
Sbjct: 271 L-KNYSQNNSKKPTKKDAKKDAKGKGSDAESVDSKDAKKDKKGATK------DTKKGAKK 323
Query: 130 AHPDSKGVTGVAKEAGE-KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKAD 188
+ +G +K+A + K ++ D++K D A++ ++ SK + + + + K D
Sbjct: 324 DTESTDAESGDSKDAKKGKKESKKDKKKDAKKDAASDAESGDSKDAKKDSKKGKKDSKKD 383
Query: 189 NEVEDKAENXXXXXXXXXXXXXXXXXXXVAEKEVQQDEENLD 230
N+ +D ++ +K+ ++D++ D
Sbjct: 384 NKKKDAKKDAESTDAESGDSKDAKKDSKKGKKDSKKDDKKKD 425
>UNIPROTKB|E1BHN5 [details] [associations]
symbol:LOC614121 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0048863 "stem cell differentiation" evidence=IEA]
[GO:0043588 "skin development" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001942
"hair follicle development" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0043588 GO:GO:0003677 GO:GO:0048863
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0001942 GeneTree:ENSGT00690000101940
InterPro:IPR022097 Pfam:PF12336 OMA:KPKTLMK EMBL:DAAA02034004
EMBL:DAAA02034005 IPI:IPI00694817 Ensembl:ENSBTAT00000030439
Uniprot:E1BHN5
Length = 204
Score = 104 (41.7 bits), Expect = 0.00096, P = 0.00096
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
KRP AF ++ R++ + +P + ++K G +WK +T+ EK+P++D+A L+A
Sbjct: 9 KRPMNAFMVWSRAQRRKMAQENPKMHN-SEISKRLGAEWKLLTESEKRPFIDEAKRLRAM 67
Query: 170 YSK 172
+ K
Sbjct: 68 HMK 70
>UNIPROTKB|D4A535 [details] [associations]
symbol:D4A535 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00567139 Ensembl:ENSRNOT00000049646 Uniprot:D4A535
Length = 204
Score = 104 (41.7 bits), Expect = 0.00096, P = 0.00096
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
S E K K K P FLF ++ + K+ HP + V K+ GE W N
Sbjct: 71 SYEREMKTYLPPGETKKKFKEPIAPSFLFCSEYCPKIKDEHP-GLSIGDVTKKLGETWSN 129
Query: 151 MTDEEKKPYLDKAAELKADYSK 172
+K+PY +AA+LK K
Sbjct: 130 TAVNDKQPYEKEAAKLKEKCEK 151
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 88 (36.0 bits), Expect = 0.00097, P = 0.00097
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 126 EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ K ++PD K + + K G W+++TDEEK+ YL++ K +Y+++M+
Sbjct: 13 QVKASNPDLK-LWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMK 61
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.305 0.123 0.337 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 232 213 0.00084 112 3 11 23 0.38 34
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 244
No. of states in DFA: 580 (62 KB)
Total size of DFA: 166 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.59u 0.14s 26.73t Elapsed: 00:00:01
Total cpu time: 26.63u 0.14s 26.77t Elapsed: 00:00:01
Start: Sat May 11 07:11:09 2013 End: Sat May 11 07:11:10 2013
WARNINGS ISSUED: 1