BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026832
(232 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 139/169 (82%), Gaps = 8/169 (4%)
Query: 9 APKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLE 68
PK RKRV+A+++S L R RDGSAF RCEEC K+VPV LI MHSCSL+AKIK+NLE
Sbjct: 3 GPKQRKRVEAETSS-----LKRARDGSAFIRCEECKKDVPVVLIDMHSCSLEAKIKLNLE 57
Query: 69 AQVVEKPAEINKKKPAERKKPTSTEPRAKRLRK--KDSDSNKPKRPPTAFFLFMDDFRKE 126
AQVVEK ++ KKKPAE+K T+TEP+ K+ R+ K D N PKRPPTAFFLFMDDFRKE
Sbjct: 58 AQVVEKVTDV-KKKPAEKKNATTTEPKPKKSRRLRKVKDPNMPKRPPTAFFLFMDDFRKE 116
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
YKE++PDSK V+ VAKE GEKWK+MTDEEKKPY+DKAAELKA+Y KAME
Sbjct: 117 YKESNPDSKNVSVVAKEGGEKWKSMTDEEKKPYVDKAAELKAEYDKAME 165
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/172 (68%), Positives = 138/172 (80%), Gaps = 9/172 (5%)
Query: 11 KPRKRVDAQSASTSSA--TLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLE 68
K RKRV+A A ++ +L+R +DGSAFARC+EC K+VPVALISMHSCSLDAKI+MNLE
Sbjct: 8 KSRKRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLE 67
Query: 69 AQVVEKPAEINKKKPAERKKPTSTEPRAKRLR-----KKDSDSNKPKRPPTAFFLFMDDF 123
+Q VEK + KKPAE+K+ S+EP+ K+ R KKD D N PKRPPTAFF+FMDDF
Sbjct: 68 SQTVEK--QTQSKKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFIFMDDF 125
Query: 124 RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
RK YKEA+PDSKGV VAKE GEKWK+MTDEEKKPY DKAAELKA+Y KA+E
Sbjct: 126 RKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 177
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/214 (60%), Positives = 158/214 (73%), Gaps = 27/214 (12%)
Query: 13 RKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVV 72
RKRV+A+ +T++ +++RG+DGSAFARC+EC K+VPVALISMHSCSL+A+IKMNLEAQ+V
Sbjct: 3 RKRVEAEDTATAANSMVRGKDGSAFARCDECKKDVPVALISMHSCSLEARIKMNLEAQIV 62
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPP--TAFFLFMDDFRKEYKEA 130
EKPAE KK PAERKKPTSTEP+AK+ +K +N K TAFF+F+D+FRK +KEA
Sbjct: 63 EKPAETTKK-PAERKKPTSTEPKAKKAKKDKKPNNPNKPKRPPTAFFIFLDEFRKTFKEA 121
Query: 131 HPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNE 190
+PDSK V VAKEAGEKWK MTDEEKKPY DKA ELKA+Y KA+ G+ N E+K
Sbjct: 122 NPDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYDKAL---GEVNNAENK---- 174
Query: 191 VEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQ 224
DEGGSEKD AE+EVQ+
Sbjct: 175 -----------------DDEGGSEKDDAEQEVQE 191
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/224 (57%), Positives = 157/224 (70%), Gaps = 32/224 (14%)
Query: 13 RKRVDAQSA-----STSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNL 67
RKRV+A+S + ++ +L+R +DGSAF +CEEC K+VPVALIS HSCSLDAKIKMNL
Sbjct: 3 RKRVEAESTDGSVDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMNL 62
Query: 68 EAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDS--DSNKPKRPPTAFFLFMDDFRK 125
EAQVVEKP E K+KPAERKK +STEP+ K+ +K+ D N PKRPPTAFFLFMDDFRK
Sbjct: 63 EAQVVEKPTEA-KQKPAERKKGSSTEPKLKKAKKEKKGRDPNAPKRPPTAFFLFMDDFRK 121
Query: 126 EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185
EYKEA+PDSK V VAKE G +WK+MTDEEKK Y+DKAAELKA+ KA+E
Sbjct: 122 EYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAENDKALES--------- 172
Query: 186 KADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQDEENL 229
D AE ED + SEK+VA+ E++ EE +
Sbjct: 173 ---------------DNAENEDDEGVSSEKEVADLELRDKEEEI 201
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/177 (64%), Positives = 139/177 (78%), Gaps = 11/177 (6%)
Query: 9 APKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLE 68
A + RKR+DA S +++ L+R RDGSAFARCEECNK+VPVALISMHSCSL+AKIKMNL+
Sbjct: 2 ASQGRKRIDAVD-SRAASVLVRSRDGSAFARCEECNKSVPVALISMHSCSLEAKIKMNLD 60
Query: 69 AQVVEKPAEINKKKPAERKKPTSTEPRAKRLR----KKDSDSNKPKRPPTAFFLFMDDFR 124
AQV+E + N+ K ERKKP+S EP+AKR + KK D N+PKRPPTAFF+F+DDFR
Sbjct: 61 AQVIE---QANEAKKTERKKPSSKEPKAKRAKTEKAKKVEDPNQPKRPPTAFFVFLDDFR 117
Query: 125 KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181
KE+KEA+P SK V V KE GEKW+ MTDEEKKPYL+K AELK +Y KAM +YN
Sbjct: 118 KEFKEANPGSKDVKRVGKEGGEKWRAMTDEEKKPYLEKVAELKEEYEKAM---ANYN 171
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/186 (63%), Positives = 138/186 (74%), Gaps = 11/186 (5%)
Query: 13 RKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVV 72
RKRVDA S +++ L+R +DGSAFARC++C KNVPVALI MHSCSL+AKIKMNL+AQVV
Sbjct: 7 RKRVDAVD-SRAASVLVRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQVV 65
Query: 73 EKPAEINKKKPAERKKPTSTEP----RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E+ AE KKP ERKKP S EP KK D N PKRPPTAFF+F+DDFRK +K
Sbjct: 66 EQAAEA--KKP-ERKKPKSKEPMAKKAKVGKGKKVKDPNMPKRPPTAFFVFLDDFRKSFK 122
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKAD 188
EA+PDSK V V KEAGEKW++MTDEEKKPYLDK AELK +Y KAME Y +D+ D
Sbjct: 123 EANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKEEYEKAMES---YEAGQDEED 179
Query: 189 NEVEDK 194
V DK
Sbjct: 180 QTVSDK 185
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 135/179 (75%), Gaps = 10/179 (5%)
Query: 3 SSSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAK 62
+S+K+N P+PRKRV+ T+ R RDGSAF RCE CNK+VPV LI MHSCSLD+K
Sbjct: 4 TSAKANPPRPRKRVEVD-------TMKRARDGSAFTRCEVCNKDVPVVLIDMHSCSLDSK 56
Query: 63 IKMNLEAQVVEKPAEINKKKPAERKK--PTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFM 120
I+MNLEAQVVEK E+ K KP ERK+ P+ + R + KK+ ++NKPKR PTAFFLFM
Sbjct: 57 IRMNLEAQVVEKETEV-KNKPVERKRAAPSENKERKVKKGKKNVNTNKPKRAPTAFFLFM 115
Query: 121 DDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179
DDFRKEYKE HPD+K V VAKE GE+W++MT EEKKPY D+AAELKA+Y K +E D
Sbjct: 116 DDFRKEYKELHPDNKSVASVAKEGGERWRSMTIEEKKPYTDRAAELKAEYVKEIEEKAD 174
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 135/179 (75%), Gaps = 8/179 (4%)
Query: 13 RKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVV 72
+KRVDA S +++ L+R +DGSAFARC++C KNVPVALI MHSCSL+AKIKMNL+AQVV
Sbjct: 7 KKRVDAVD-SRAASVLLRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQVV 65
Query: 73 EKPAEINKKKPAERKKPTSTEP----RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E+ AE KKP ERKKP S EP KK D N PKRPPTAFF F+DDFRK +K
Sbjct: 66 EQAAEA--KKP-ERKKPKSKEPMAKKAKVEKVKKVKDPNMPKRPPTAFFAFLDDFRKSFK 122
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
EA+PDSK V V KEAGEKW++MTDEEKKPYLDK AELKA+Y KAME + ED+A
Sbjct: 123 EANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKAEYEKAMESYEAGQDEEDQA 181
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/235 (51%), Positives = 146/235 (62%), Gaps = 29/235 (12%)
Query: 5 SKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIK 64
S NA + RKRV+A L R RDGSAF RCE CNK+VPV LI MHSCSLD I+
Sbjct: 6 SGGNAARSRKRVEA-------TVLKRSRDGSAFTRCEACNKDVPVVLIDMHSCSLDKHIR 58
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFR 124
M LEAQVVEK E+ KPAER K + AK + K KR PTAFFLFMDDFR
Sbjct: 59 MMLEAQVVEKTVEV-AAKPAERNKSS-----AKGHGGGGNKDAKRKRSPTAFFLFMDDFR 112
Query: 125 KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN--- 181
KE+K AHPD+K V VAKE GEKWK+MTDEEKKPY++KAAELKA EG+G+ N
Sbjct: 113 KEFKAAHPDNKSVATVAKEGGEKWKSMTDEEKKPYVEKAAELKAQAENG-EGSGENNVAK 171
Query: 182 ----EVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQDEEN-LDD 231
+ + EV+ A+ + KA ED D+ G ++D +DE+N LDD
Sbjct: 172 KKAKADDKDGEQEVDQPAKKRIRRKALDEDEDDAGDQED-------EDEQNELDD 219
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/180 (62%), Positives = 139/180 (77%), Gaps = 8/180 (4%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
S+ SNAPK RKRV+A++++ +S TL R +DGSAFA CE CNK+V VALISMH+CSLDAKI
Sbjct: 5 STTSNAPKQRKRVEAETSTNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKI 64
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD------SDSNKPKRPPTAFF 117
++NLEAQVVE AE KKKPAE+KK TS P+ KRL+K + S SNKPKRP TAFF
Sbjct: 65 RVNLEAQVVETQAE-AKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFF 123
Query: 118 LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177
+FM+DFRK +K H S AK GEKWK++T+EEKK YLDKAAELKA+Y+K++E N
Sbjct: 124 IFMNDFRKTFKTEHNGSLA-KDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESN 182
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 112/177 (63%), Positives = 136/177 (76%), Gaps = 8/177 (4%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
S+ SNAPK RKRV+A+++S +S TL R +DGSAFA CE CNK+V VALISMH+CSLDAKI
Sbjct: 5 STTSNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKI 64
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD------SDSNKPKRPPTAFF 117
++NLEAQVVE AE KKKPAE+KK TS P+ KRL+K + S SNKPKRP TAFF
Sbjct: 65 RVNLEAQVVETQAE-AKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFF 123
Query: 118 LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+FM DFRK +K H S AK GEKWK++T+EEKK YLDKAAELKA+Y+K++
Sbjct: 124 IFMSDFRKTFKSEHNGSLA-KDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/191 (57%), Positives = 128/191 (67%), Gaps = 22/191 (11%)
Query: 5 SKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIK 64
S NA + RKRV+A L R RDGSAF RCE CNK+VPV LI MHSCSLD KI+
Sbjct: 6 STGNAARSRKRVEA-------TVLKRSRDGSAFTRCEACNKDVPVVLIDMHSCSLDEKIR 58
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFR 124
M LEAQVVEK E+ A+RKK + AK KD+ K KR PTAFFLFMDDFR
Sbjct: 59 MTLEAQVVEKTVEV---ASADRKKSS-----AKGGGNKDA---KRKRSPTAFFLFMDDFR 107
Query: 125 KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184
KE+K HPD+K V VAKE GE+WK+MTDEEKKPY++KAAELKA+ EG+G+ N
Sbjct: 108 KEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELKAEAENG-EGSGENNVAT 166
Query: 185 DKA---DNEVE 192
KA D EV+
Sbjct: 167 KKAKTDDQEVD 177
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/167 (58%), Positives = 115/167 (68%), Gaps = 15/167 (8%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
+ KS A + RKRV+A T SA L R RDGSAF RCE C K+V V LI MH+CSLD KI
Sbjct: 2 AGKSGA-RTRKRVEA----TDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKI 56
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDF 123
+++LEAQVVE+ E+ K K + AK K KRPPTAFFLFM DF
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAK----------KGKRPPTAFFLFMSDF 106
Query: 124 RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RKEYK HPD+K V+ VAKE GE+WK+M+DE+KKPYLDKAAELKA+Y
Sbjct: 107 RKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEY 153
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/167 (58%), Positives = 115/167 (68%), Gaps = 15/167 (8%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
+ KS A + RKRV+A T SA L R RDGSAF RCE C K+V V LI MH+CSLD KI
Sbjct: 2 AGKSGA-RTRKRVEA----TDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKI 56
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDF 123
+++LEAQVVE+ E+ K K + AK K KRPPTAFFLFM DF
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAK----------KGKRPPTAFFLFMSDF 106
Query: 124 RKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RKEYK HPD+K V+ VAKE GE+WK+M+DE+KKPYLDKAAELKA+Y
Sbjct: 107 RKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEY 153
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 130/201 (64%), Gaps = 12/201 (5%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
++ NAP+ RKRV+A L R RDGSAF RCE CNK+V + LI +HSCSLD+KI
Sbjct: 2 ATAGNAPRSRKRVEA-------TVLKRARDGSAFTRCEACNKDVAIVLIDLHSCSLDSKI 54
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDD 122
+++LE+QVVEK E+ +KK + + K D + K KRPPTAFFLFM D
Sbjct: 55 RLSLESQVVEKAVEVQEKKRKAPPAAAGGKGKKKSKADGDGAKKAKAKRPPTAFFLFMKD 114
Query: 123 FRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
FR E+K +HPD KGV V K AGEKW++MT+EEKKPY D+A ELKA EG+ + N
Sbjct: 115 FRVEFKTSHPDEKGVAAVGKAAGEKWRSMTEEEKKPYNDQAKELKAQLDNG-EGSAENNV 173
Query: 183 V-EDKADNEVE--DKAENEVE 200
E+KAD + E D A+ EV+
Sbjct: 174 GDEEKADADAEEVDDADLEVD 194
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 117/170 (68%), Gaps = 11/170 (6%)
Query: 3 SSSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAK 62
+++KS A RKRV+A A L R RDGSAF RCE CNKNVPV LI +HSCSLD+K
Sbjct: 2 ATAKSTAT-ARKRVEA-------AVLKRARDGSAFTRCEGCNKNVPVVLIDLHSCSLDSK 53
Query: 63 IKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDS--NKPKRPPTAFFLFM 120
I+ +LEAQVVEK EI+K + +RK P+S + K N KRPPTAFF+FM
Sbjct: 54 IRTSLEAQVVEKTVEISKPE-KKRKAPSSAAAGKGSKKGKSGAGAKNGKKRPPTAFFIFM 112
Query: 121 DDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
DFR E+K +HPD KGV+ V K AG KWK MTDEEKKPYLD+A ELKA +
Sbjct: 113 KDFRLEFKASHPDEKGVSAVGKAAGVKWKAMTDEEKKPYLDQAKELKAKF 162
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 114/174 (65%), Gaps = 7/174 (4%)
Query: 3 SSSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAK 62
+SSK+N P+ RKRVD A L R RDGS F +C+ CNK++PVAL MH C L+ K
Sbjct: 5 ASSKTNPPRQRKRVD-----VDPANLKRARDGSGFTKCDVCNKHIPVALSDMHDCQLEDK 59
Query: 63 IKMNLEA--QVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFM 120
I+ N +A + A+ + +KK +P+ + KK D N+PK+P TAFF+FM
Sbjct: 60 IRSNFDASKETKHADAQKPPEAKKAKKKSADEKPKKRTREKKARDPNQPKKPATAFFVFM 119
Query: 121 DDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
DDFRK YKE +PD KG V KE G KWK M+DE+KKPYL+KAAELKA+Y KAM
Sbjct: 120 DDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSDEDKKPYLEKAAELKAEYEKAM 173
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 130/176 (73%), Gaps = 13/176 (7%)
Query: 4 SSKSNAPKPRKRVDAQSAST-SSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAK 62
S+ SNAPK RKRV+A+++S +S TL R +DGSAFA CE CNK+V VALISMH+CSLDAK
Sbjct: 5 STTSNAPKQRKRVEAETSSNNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAK 64
Query: 63 IKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD------SDSNKPKRPPTAF 116
I+ AQVVE AE KKKPAE+KK T+ P+ KRL+K + S SNKPKRP TAF
Sbjct: 65 IR----AQVVETQAE-AKKKPAEKKKATADGPKPKRLKKTNDEKKSSSTSNKPKRPLTAF 119
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
F+FM+DFRK +K H S AK GEKW ++T++EKK YLDKAAELKA+Y+K
Sbjct: 120 FIFMNDFRKTFKTEHNGS-FAKDAAKIGGEKWMSLTEDEKKVYLDKAAELKAEYNK 174
>gi|356494961|ref|XP_003516349.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 178
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 95/136 (69%), Gaps = 8/136 (5%)
Query: 13 RKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVV 72
RKRVDA +S L+ +DGSAFA C +C KNVPVALI MHSCSL+AKIKMNL+AQVV
Sbjct: 7 RKRVDAVDCRAAS-VLVCAKDGSAFAHCYDCKKNVPVALIDMHSCSLEAKIKMNLDAQVV 65
Query: 73 EKPAEINKKKPAERKKPTSTEPR----AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
E+ AE KKP ERKKP S EP KK D N PKRPPT FF+F+DDFRK +K
Sbjct: 66 EQAAE--AKKP-ERKKPKSKEPMAKKAKVGKGKKVKDPNMPKRPPTTFFVFLDDFRKSFK 122
Query: 129 EAHPDSKGVTGVAKEA 144
EA+PDSK V KEA
Sbjct: 123 EANPDSKDAKRVGKEA 138
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 112/177 (63%), Gaps = 23/177 (12%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
S+ SNAPK RKRV+A+++S +S TL R +DGSAFA + C
Sbjct: 5 STTSNAPKQRKRVEAETSSNTSTTLRRAKDGSAFA---------------LCLCVFGCCC 49
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD------SDSNKPKRPPTAFF 117
EAQVVE AE KKKPAE+KK TS P+ KRL+K + S SNKPKRP TAFF
Sbjct: 50 CCCSEAQVVETQAE-AKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFF 108
Query: 118 LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+FM DFRK +K H S AK GEKWK++T+EEKK YLDKAAELKA+Y+K++
Sbjct: 109 IFMSDFRKTFKSEHNGSLA-KDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 164
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 88/131 (67%), Gaps = 15/131 (11%)
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFR 124
M LEAQVVEK E+ A+RKK + AK KD+ K KR PTAFFLFMDDFR
Sbjct: 1 MTLEAQVVEKTVEV---ASADRKKSS-----AKGGGNKDA---KRKRSPTAFFLFMDDFR 49
Query: 125 KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184
KE+K HPD+K V VAKE GE+WK+MTDEEKKPY++KAAELKA+ EG+G+ N
Sbjct: 50 KEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELKAEAENG-EGSGENNVAT 108
Query: 185 DKA---DNEVE 192
KA D EV+
Sbjct: 109 KKAKTDDQEVD 119
>gi|413925110|gb|AFW65042.1| hypothetical protein ZEAMMB73_846021 [Zea mays]
Length = 123
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 73/116 (62%), Gaps = 18/116 (15%)
Query: 5 SKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIK 64
S NA + RKRV+A L R RDGSAF RCE CNK+VPV LI MHSCSLD KI+
Sbjct: 6 STGNAARSRKRVEAT-------VLKRSRDGSAFTRCEACNKDVPVVLIDMHSCSLDEKIR 58
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFM 120
M LEAQVVEK E+ A+RKK + AK KD+ K KR PTAFFLFM
Sbjct: 59 MTLEAQVVEKTVEV---ASADRKKSS-----AKGGGNKDA---KRKRSPTAFFLFM 103
>gi|334187856|ref|NP_001190371.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|332005782|gb|AED93165.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 157
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 61/70 (87%)
Query: 4 SSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKI 63
S+ SNAPK RKRV+A+++S +S TL R +DGSAFA CE CNK+V VALISMH+CSLDAKI
Sbjct: 5 STTSNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKI 64
Query: 64 KMNLEAQVVE 73
++NLEAQVVE
Sbjct: 65 RVNLEAQVVE 74
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RKK + S KPKRPP+AFF+FM +FR+EY+ AHPD+K V V+K AGEKW+ M+++EK PY
Sbjct: 49 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPY 108
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGS 213
+DKA + K DY K + N D E + D E + K+E +D +GGS
Sbjct: 109 VDKAGQKKQDYEK-TKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQDGGS 161
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RKK + S KPKRPP+AFF+FM +FR+EY+ AHPD+K V V+K AGEKW+ M+++EK PY
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPY 83
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGS 213
+DKA + K DY K + N D E + D E + K+E +D +GGS
Sbjct: 84 VDKAGQKKQDYEK-TKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQDGGS 136
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RKK + S KPKRPP+AFF+FM +FR+EY+ AHP +K V V+K AGEKW+ M+++EK PY
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPY 83
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGS 213
+DKA + K DY K + N D E + D E + K+E +D +GGS
Sbjct: 84 VDKAGQKKQDYEK-TKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQDGGS 136
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ +K D NKPKRPP+AFF+FM+DFRK YKE HP++K V V K G+KWK +TD EK
Sbjct: 24 KKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKQLTDAEK 83
Query: 157 KPYLDKAAELKADYSKAMEGNGDYN--EVEDKADNEVEDKAENEV 199
P++ KA + K +Y K+M+ YN + + AD E DK+ +EV
Sbjct: 84 APFIAKAEKRKQEYEKSMQA---YNRKQAGEAADEEESDKSRSEV 125
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPP+AFF+FM++FRK+YKE HP+ K V+ + K G+KWK+++D EK
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDE 210
PY+ KA +LKA+Y+K ++ + + A + DK+++EV D E E+GDE
Sbjct: 77 PYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGD-SDKSKSEVND--EDEEGDE 126
>gi|357513707|ref|XP_003627142.1| HMG1/2-like protein [Medicago truncatula]
gi|355521164|gb|AET01618.1| HMG1/2-like protein [Medicago truncatula]
Length = 248
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 77/124 (62%), Gaps = 25/124 (20%)
Query: 30 RGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKP 89
R +DGSAFA+C L+AK+K NL++ VE+ AE+ KKP ERKKP
Sbjct: 144 RAKDGSAFAKC------------------LEAKLKRNLDSHAVEQAAEV--KKP-ERKKP 182
Query: 90 TSTEPRAKRL----RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
S +P AKR R+K DSN KR PT FF+FMD+FRK +KEA+ DSK V V KE G
Sbjct: 183 NSKDPTAKRAKVGKREKVKDSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVGKEDG 242
Query: 146 EKWK 149
EKW+
Sbjct: 243 EKWR 246
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPP+AFF+FM++FRK+YKE HP+ K V+ + K G+KWK+++D EK
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSLIGKAGGDKWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDE 210
PY+ KA +LKA+Y+K ++ + + A + DK+++EV D E E+GDE
Sbjct: 77 PYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGD-SDKSKSEVND--EDEEGDE 126
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
Length = 84
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 60/78 (76%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ +K D N PKRPPTAFF+F++ FR++YKE HPD KGV V K AG+KW M++ EK
Sbjct: 1 KKEKKASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMSESEK 60
Query: 157 KPYLDKAAELKADYSKAM 174
Y++KAA+L+ADY+++M
Sbjct: 61 AVYVNKAAQLRADYAESM 78
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 70/98 (71%), Gaps = 6/98 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+F+D+FRKEYK+A+P++ V+ V K GEKW+ ++D EK PY+ KA
Sbjct: 42 DPNKPKRPPSAFFVFLDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDAEKAPYVAKAE 101
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEV---EDKAENEV 199
+ KA+Y K+M YN+ +D EV DK+++EV
Sbjct: 102 KKKAEYEKSM---ATYNKQKDSNTEEVAEESDKSKSEV 136
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 77/115 (66%), Gaps = 7/115 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
K+PT + +AK+ D NKPKRPP+AFF+F+++FRKEYK +P+ K V+ V K GE
Sbjct: 39 KRPTKKDLKAKK------DPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGE 92
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVED 201
KWK+++ EK PY KAA+ KA+Y K M D +V AD+E +++++EV D
Sbjct: 93 KWKSLSHAEKAPYEAKAAKRKAEYEKLMRAY-DSKKVASAADDEESERSKSEVND 146
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FRK+YKEA+PD++ V+ V K GEKWK+MTD EK PY+ KA
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKEANPDNRSVSAVGKAGGEKWKSMTDAEKAPYVQKAE 93
Query: 165 ELKADYSKAMEGNGDYN-EVEDKADNEVEDKAENEV 199
+ K++Y+K M+ YN ++ +++ DK+++EV
Sbjct: 94 KRKSEYNKKMQA---YNLKLAGGGNDDESDKSKSEV 126
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPPTAFF+FM++FRK+YKE HP+ K V+ + K G+ WK+++D EK
Sbjct: 17 RKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSE 214
PY+ KA +LK +Y+K M+ YN + + ++ + K+E DGDE G E
Sbjct: 77 PYVSKAEKLKVEYTKKMDA---YNNKQSGGGPTLSGDSD---KSKSEVNDGDEEGDE 127
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 78/115 (67%), Gaps = 6/115 (5%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPP+AFF+FM+ FRK+YKE HP+ K V+ + K G+KWK+MTD +K
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDADKA 76
Query: 158 PYLDKAAELKADYSKAMEGNGDYN--EVEDKADNEVEDKAENEVEDKAEKEDGDE 210
P++ KA +LKA+Y+K ++ YN + A + DK+++EV D+ E GDE
Sbjct: 77 PFVTKAEKLKAEYTKKIDA---YNNKQAGGPATSGDSDKSKSEVNDEDEGS-GDE 127
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%), Gaps = 17/126 (13%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S KPKRPP+AFF+FM +FR+EY+ HP +K V V+K AGEKW+ M+D+EK+PY+D+A +
Sbjct: 30 SGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQ 89
Query: 166 LKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQD 225
K DY K KA+ DK E+ KA+ E DE GS+ +V +++ D
Sbjct: 90 KKQDYEKT------------KANF---DKKESTSSKKAKTE--DEDGSKSEVDDEDGSSD 132
Query: 226 EENLDD 231
EEN DD
Sbjct: 133 EENDDD 138
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 76/117 (64%), Gaps = 9/117 (7%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKK T + K+ + D NKPKRPP+AFF+FM++FRK YKE HP++K V V K G
Sbjct: 17 RKKATES----KKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGG 72
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE--VEDKADNEVEDKAENEVE 200
+KWK ++DEEK PY KA + KA+Y K M+ YN+ AD+E DK+++EV
Sbjct: 73 DKWKQLSDEEKAPYQAKAEKRKAEYQKNMDA---YNKKLAAGDADDEESDKSKSEVH 126
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D N+PKRPP+AFF+FM+ FRK+YKE HPD K V+ V K G +WK+++D EK
Sbjct: 17 RKTKAEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVKQVSVVGKAGGAEWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDE 210
P++ KA +LKA+Y+K M + +A + DK+++EV D+A+ + DE
Sbjct: 77 PFVAKAEKLKAEYNKKMVAYNNPQAGGQEASGD-SDKSKSEVNDEADGSEADE 128
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 63/84 (75%), Gaps = 3/84 (3%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPP+AFF+FM++FRK+YKE HP+ K V+ + K G+KWK+++D EK
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAMEGNGDYN 181
PY+ KA +LKA+Y+K ++ YN
Sbjct: 77 PYVSKAEKLKAEYTKKIDA---YN 97
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPP+AFF+FM++FRK+YKE HP+ K V+ + K G+KWK+++D EK
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAMEG 176
PY+ KA +LKA+Y+K ++
Sbjct: 77 PYVSKAEKLKAEYTKKIDA 95
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 17/126 (13%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S KPKRPP+AFF+FM +FR++Y+ HP +K V V+K AGEKW+ M+D+EK+PY+D+A +
Sbjct: 30 SGKPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQ 89
Query: 166 LKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQD 225
K DY K KA+ DK E+ KA+ E DE GS+ +V +++ D
Sbjct: 90 KKQDYEKT------------KANF---DKKESTSSKKAKTE--DEDGSKSEVDDEDGSSD 132
Query: 226 EENLDD 231
EEN DD
Sbjct: 133 EENDDD 138
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 56/79 (70%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N+PKRPPTAFF+++++FRK +K+ HPD KGVT V K G+KWK M++ EK PYL KAA
Sbjct: 44 DPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAVGKACGDKWKEMSEAEKAPYLAKAA 103
Query: 165 ELKADYSKAMEGNGDYNEV 183
+ +A+Y M EV
Sbjct: 104 QKRAEYDVTMTAYKKKQEV 122
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 17/126 (13%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S KPKRPP+AFF FM +FR+EY+ HP +K V V+K AGEKW+ M+D+EK+PY+D+A +
Sbjct: 30 SGKPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQ 89
Query: 166 LKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQD 225
K DY K KA+ DK E+ KA+ E DE GS+ +V +++ D
Sbjct: 90 KKQDYEKT------------KANF---DKKESTSSKKAKTE--DEDGSKSEVDDEDGSSD 132
Query: 226 EENLDD 231
EEN DD
Sbjct: 133 EENDDD 138
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 63/94 (67%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
K+ A K S+ R K ++ D NKPKRPP+AFF+F+++FRK YK+ HP+ K V+ V
Sbjct: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
K GEKWK++TD EK P+ KAA+ K DY K M
Sbjct: 88 GKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLM 121
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 74/117 (63%), Gaps = 6/117 (5%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPPT FF+FM++FRK+YKE HP+ K V+ + K G+ WK+++D EK
Sbjct: 17 RKTKVEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSE 214
PY+ KA +LK +Y+K M+ YN + + ++ + K+E DGDE G E
Sbjct: 77 PYVSKAEKLKVEYTKKMDA---YNNKQSGGGPTLSGDSD---KSKSEVNDGDEEGDE 127
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 61/78 (78%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPP+AFF+FM++FRK+YKE HP+ K V+ + K G+KWK+++D EK
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAME 175
PY+ KA +LKA+Y+K ++
Sbjct: 77 PYVSKAEKLKAEYTKKID 94
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPPTAFF+FM++FRK+YKE HP+ K V+ + K G+ WK+++D EK
Sbjct: 17 RKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKA 76
Query: 158 PYLDKAAELKADYSKAME 175
PY+ KA +LK +Y+K M+
Sbjct: 77 PYVSKAEKLKVEYTKKMD 94
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 59/78 (75%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R K + D NKPKRPPTAFF+FM++FRK+YKE HP+ K V+ + K G+ WK+++D EK
Sbjct: 37 RKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKA 96
Query: 158 PYLDKAAELKADYSKAME 175
PY+ KA +LK +Y+K M+
Sbjct: 97 PYVSKAEKLKVEYTKKMD 114
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 71/108 (65%), Gaps = 5/108 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFR YKE HP +K V V K GEKWK+++D EK PY+ KA
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 165 ELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEVEDKAEKEDGDE 210
+ K +Y K M+ YN+ E ++E DK+ +EV D+ + EDG E
Sbjct: 91 KRKVEYEKNMKA---YNKKLEEGPKEDEESDKSVSEVNDEDDAEDGSE 135
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 76/110 (69%), Gaps = 5/110 (4%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPPTAFF+F+++FR+ +K +P+ KGVT V K GEKWK+M++ EK+P++
Sbjct: 4 KKLKDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFM 63
Query: 161 DKAAELKADYSKAMEGNGDYNEVEDKADNEVE--DKAENEVEDKAEKEDG 208
KA + K++Y K + YN+ +D + E E DK+++E+ D ++E G
Sbjct: 64 TKAVQKKSEYDKTISA---YNKKQDAEEVEAEESDKSKSEINDDEDEEVG 110
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 70/96 (72%), Gaps = 4/96 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM DFR++YK+ HP++K V V K GE+WK++++EEK PY+D+A
Sbjct: 41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRAL 100
Query: 165 ELKADYSKAMEGNGDYN-EVEDKADNEVEDKAENEV 199
+ K +Y ++ YN ++E K D E DK+++EV
Sbjct: 101 KKKEEYEITLQA---YNKKLEGKDDEEGSDKSKSEV 133
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 4/99 (4%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K + D NKPKRPPT FF+FM+ FRK+YKEAHP +K V V K GEKWK++++ EK +L
Sbjct: 4 KGEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSESEKAVFL 63
Query: 161 DKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
KA +L+++Y K + D E D E DK+++EV
Sbjct: 64 SKAEKLRSEYQKKI----DAYEKGQHVDEEESDKSKSEV 98
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
DS+ PKRPP+A+F+FM+ FRKE+K A+PD KGVT AK GEKW +M++EEK PY+ +A+
Sbjct: 133 DSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVAEAS 192
Query: 165 ELKADYSKAM 174
K Y +AM
Sbjct: 193 VRKGQYEQAM 202
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
S++ R K+ + D NKPKRPP+AFF+F+++FRK YK+ HP+ K V+ V K GEKWK+
Sbjct: 38 SSKKRVKKEKITKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
Query: 151 MTDEEKKPYLDKAAELKADYSKAM 174
++ EK PY KAA+ K+DY K M
Sbjct: 98 LSAAEKAPYEAKAAKRKSDYEKLM 121
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
DS+ PKRPP+A+F+FM+ FRKE+K A+PD KGVT AK GEKW +M++EEK PY+ +A+
Sbjct: 189 DSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVAEAS 248
Query: 165 ELKADYSKAM 174
K Y +AM
Sbjct: 249 VRKGQYEQAM 258
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 54/67 (80%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S KPKRPP+AFF+FM +FR+EY+ HP +K V V+K AGEKW++M+++EK+PY+D+A +
Sbjct: 31 SGKPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQ 90
Query: 166 LKADYSK 172
K DY K
Sbjct: 91 KKQDYEK 97
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 54/67 (80%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S KPKRPP+AFF+FM +FR+EY+ HP +K V V+K AGEKW++M+++EK+PY+D+A +
Sbjct: 31 SGKPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQ 90
Query: 166 LKADYSK 172
K DY K
Sbjct: 91 KKQDYEK 97
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
Length = 156
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 55/71 (77%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D N+PKRP TAFF+F++++RK +K+ HP+ KGV V K G+ WK +T+EEKKPY DKA
Sbjct: 50 ADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYHDKA 109
Query: 164 AELKADYSKAM 174
A+ KADY K +
Sbjct: 110 AQKKADYEKTL 120
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 5/108 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFR+ YK+ HP +K V V K GEKWK+++D EK PY+ KA
Sbjct: 33 DPNKPKRPSSAFFVFMEDFRETYKKEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 92
Query: 165 ELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEVEDKAEKEDGDE 210
+ K +Y K M+ YN+ E ++E DK+ +EV D+ + EDG E
Sbjct: 93 KRKVEYEKNMKA---YNKKLEEGPKEDEESDKSVSEVNDEDDAEDGSE 137
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 80/130 (61%), Gaps = 11/130 (8%)
Query: 70 QVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKE 129
+V EKP I K+K A ++ S+ + K+ RK D NKPKRP +AFF+FM+DFRK YKE
Sbjct: 16 KVEEKP--IGKRKTAAKESKVSSR-QEKKGRKAAKDPNKPKRPASAFFVFMEDFRKTYKE 72
Query: 130 AHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN--------GDYN 181
+P+ K V+ V K G+KWK+M++ +K PY+ KA + K +Y K M GD
Sbjct: 73 KNPNVKSVSVVGKAGGDKWKSMSEADKAPYVAKAGKRKTEYEKNMAAYNNKQTSTAGDSA 132
Query: 182 EVEDKADNEV 191
E DK+ +EV
Sbjct: 133 EESDKSKSEV 142
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 70/101 (69%), Gaps = 9/101 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKR P+AFF+FM+DFRKE+KE +P +K V V K GE+WK+M+D EK P++ KA
Sbjct: 6 DPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDAEKAPFVKKAE 65
Query: 165 ELKADYSKAMEGNGDYNEVE----DKADNEVE--DKAENEV 199
+LKA+Y K M YN+ E D AD E E DK+++EV
Sbjct: 66 KLKAEYEKKMVA---YNKGEKVKDDNADVEEEESDKSKSEV 103
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
Length = 83
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 57/75 (76%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K +D N+PKRP TAFF+F++++RK +K+ HP+ KGV V K G+ WK +T+EEKKPY
Sbjct: 2 KKNAADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPY 61
Query: 160 LDKAAELKADYSKAM 174
DKAA+ KADY K +
Sbjct: 62 HDKAAQKKADYEKTL 76
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium distachyon]
Length = 160
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 66/94 (70%), Gaps = 4/94 (4%)
Query: 93 EPRAK-RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
+P AK R K D NKPKR P+AFF+FMD+FRKE+KE +P +K V V K AGE+WK +
Sbjct: 25 KPAAKGRKGKAGKDPNKPKRAPSAFFVFMDEFRKEFKEKNPKNKSVAAVGKAAGERWKTL 84
Query: 152 TDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185
++ +K PY+ KA +LKA+Y+KA+ YN+ E
Sbjct: 85 SESDKAPYVAKANKLKAEYNKAIAA---YNKGES 115
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 57/71 (80%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FRK+YK+ HP++K V V K G+KWK+M+D EK PY++KA
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAE 93
Query: 165 ELKADYSKAME 175
+ K +Y+K+M+
Sbjct: 94 KRKTEYNKSMQ 104
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%), Gaps = 3/98 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM+ FRKE+K+ +P +K + V K GE+WK+M+D EK P++ KA
Sbjct: 29 DPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDSEKAPFVSKAE 88
Query: 165 ELKADYSKAMEGNGDYNEVED---KADNEVEDKAENEV 199
+LKA+Y K M + ++ D + + E DK+++EV
Sbjct: 89 KLKAEYGKKMNAHNKGEKLRDDNAELEEEESDKSKSEV 126
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 64/95 (67%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+F+++FRK YK+ HP+ K V+ V K GEKWK++++ +K PY KAA
Sbjct: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAA 111
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
+ K+DY K M E D E D++++EV
Sbjct: 112 KRKSDYEKLMAAYNKKQESMADDDEEESDRSKSEV 146
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 21/127 (16%)
Query: 56 SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTA 115
S DAK+ +N + V K +KPA+ K+P D NKPKRPP+A
Sbjct: 10 SKKADAKLAVNKKGAVATK----GGRKPAKGKEP--------------KDPNKPKRPPSA 51
Query: 116 FFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
FF+FM+DFRK++K+ +PD+K V+ V K AG KWK++++ EK PY KA + KA+Y K M+
Sbjct: 52 FFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMK 111
Query: 176 GNGDYNE 182
YN+
Sbjct: 112 A---YNK 115
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 71/109 (65%), Gaps = 8/109 (7%)
Query: 76 AEINKKKPAER--------KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEY 127
A I +KKP+ + KP E +++ + D++ PKRP +AFF+FMD+FRK +
Sbjct: 7 AVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMDEFRKYF 66
Query: 128 KEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
KE +PD+K V+ V K GEKWK++++ +K PYL+KA + KA+Y K +E
Sbjct: 67 KEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEA 115
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FRK+YKE HP +K V+ V K G+KWK++++ EK PY+ KA
Sbjct: 43 DPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAE 102
Query: 165 ELKADYSKAMEG-NGDYNEVEDKADNEVEDKAENEV 199
+ K +Y+K+M+ N E A+ E DK+ +EV
Sbjct: 103 KRKTEYNKSMQAYNKRMAEGPTAAEEEESDKSRSEV 138
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FRK+YKE HP +K V+ V K G+KWK++++ EK PY+ KA
Sbjct: 41 DPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAE 100
Query: 165 ELKADYSKAMEG-NGDYNEVEDKADNEVEDKAENEV 199
+ K +Y+K+M+ N E A+ E DK+ +EV
Sbjct: 101 KRKTEYNKSMQAYNKRMAEGPTAAEEEESDKSRSEV 136
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFRK+YKE+HP++K V V K G+KWK++++ EK PY KA
Sbjct: 35 DPNKPKRPASAFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAE 94
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
+ K +Y+K M YN+ +++ DK+++EV
Sbjct: 95 KRKFEYNKDMAA---YNKRLAGGNDDESDKSKSEV 126
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM+DFRK++K+ + D+K V+ V K AG KWK+MT+ EK PY KA
Sbjct: 41 DPNKPKRPPSAFFVFMEDFRKQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAE 100
Query: 165 ELKADYSKAMEGNGDYNE 182
+ KA+Y K+M+ YN+
Sbjct: 101 KRKAEYEKSMK---SYNK 115
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 9/103 (8%)
Query: 92 TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
T+ R++R+ DS KPK+PPTAFF F++DFRKE++E +PD K + + K GEKWK M
Sbjct: 76 TKKRSQRV-----DSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTM 130
Query: 152 TDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA-DNEVED 193
T EEK Y D A E +A++ +AM DY + ++ D E+ED
Sbjct: 131 TYEEKVQYYDIATEKRAEFDRAM---ADYIKRQESGEDEEIED 170
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 5/107 (4%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ +K D NKPKRPP+AFF+FM+DFRK YKE HP++K V V K G+KWK +T EK
Sbjct: 24 KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEK 83
Query: 157 KPYLDKAAELKADYSKAMEGNGDYN--EVEDKADNEVEDKAENEVED 201
P++ KA + K +Y K ++ YN + A+ E DK+ +EV D
Sbjct: 84 APFISKAEKRKQEYEKNLQA---YNKKQAAGAAEEEESDKSRSEVND 127
>gi|297812489|ref|XP_002874128.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
gi|297319965|gb|EFH50387.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
Length = 171
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 73/136 (53%), Gaps = 22/136 (16%)
Query: 34 GSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93
GS F RCE CNK +P L+ MH C + AQ VE E
Sbjct: 9 GSFFIRCEGCNKKIPEDLVRMHICYARYGFAVYQAAQAVE------------------AE 50
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
+AKR R+K DSN+P P T F +FM+ FRK ++ + S V V+K E WK+MT+
Sbjct: 51 SQAKR-RRKAKDSNRP--PLTGFVIFMNGFRKSFRTDYNGSL-VKEVSKIGWEMWKSMTE 106
Query: 154 EEKKPYLDKAAELKAD 169
+EKK Y+DKAAEL A+
Sbjct: 107 DEKKVYVDKAAELMAN 122
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 4/96 (4%)
Query: 93 EPRAK-RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
+P AK R K D NKPKR P+AFF+FM++FRKE+KE +P +K V V K AG++WK++
Sbjct: 25 KPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSL 84
Query: 152 TDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
T+ +K PY+ KA +LKA+Y+KA+ YN+ E A
Sbjct: 85 TEADKAPYVAKANKLKAEYNKAIAA---YNKGESTA 117
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKR P+AFF+F+D+FRKE+KE +P++K V V K G +WK+M+D +K+PY+ KA
Sbjct: 38 DPNKPKRAPSAFFVFLDEFRKEFKEKNPENKSVAAVTKAGGARWKSMSDADKEPYVSKAD 97
Query: 165 ELKADYSKAMEG--NGDYNEVEDKAD-NEVEDKAENEV 199
+LK +Y K ++ G +E ED A+ +E DK+++EV
Sbjct: 98 KLKVEYQKKVKAYEKGQAHEPEDNAEMDEESDKSKSEV 135
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 53/68 (77%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N+PKRPP+AFF+F++DFRK YK+ HP+ K V+ V K GEKWK+M++ EK P+ KAA+
Sbjct: 54 NRPKRPPSAFFVFLEDFRKVYKQEHPNVKAVSAVGKAGGEKWKSMSNAEKSPFEAKAAKR 113
Query: 167 KADYSKAM 174
K+DY K M
Sbjct: 114 KSDYEKLM 121
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 12/128 (9%)
Query: 90 TSTEPRAKRL-----RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
TST+ R K +K D N+PKRPP+AFF+F++DFRKE+ A+P++K V V K A
Sbjct: 11 TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAA 70
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVE---DKAENEVED 201
G +WK MTDE+K PY+ KA K +Y K ++ YN N E DK+++EV D
Sbjct: 71 GARWKAMTDEDKAPYVAKAESRKTEYIKNVQ---QYNLKLASGTNREEDDSDKSKSEV-D 126
Query: 202 KAEKEDGD 209
+AE ED D
Sbjct: 127 EAEAEDDD 134
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%), Gaps = 5/103 (4%)
Query: 81 KKPAERKKPTSTEPRAK-RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
K+ A++ K T +P+AK + K+ D+NKPK+PPTAFF F++DFRKE++ +PD K +
Sbjct: 42 KRSAQQTKSTK-KPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRD 100
Query: 140 VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
+ K GEKWK MT EEK Y D A E +A++ +AM +YN+
Sbjct: 101 IGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAM---TEYNK 140
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 8/122 (6%)
Query: 80 KKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
+K PAE KPT E R ++ KKD NKPKR P+AFF+F++DFR +K+ +P+ K V+
Sbjct: 28 RKAPAE--KPTKRETRKEKKAKKDP--NKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSA 83
Query: 140 VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
V K G+KWK+M+ EK PY +KAA+ KA+Y K M+ YN+ ++ +E E K+ +E+
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDA---YNKNLEEGSDESE-KSRSEI 139
Query: 200 ED 201
D
Sbjct: 140 ND 141
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 8/122 (6%)
Query: 80 KKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
+K PAE KPT E R ++ KKD NKPKR P+AFF+F++DFR +K+ +P+ K V+
Sbjct: 28 RKAPAE--KPTKRETRKEKKAKKDP--NKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSA 83
Query: 140 VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
V K G+KWK+M+ EK PY +KAA+ KA+Y K M+ YN+ ++ +E E K+ +E+
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDA---YNKNLEEGSDESE-KSRSEI 139
Query: 200 ED 201
D
Sbjct: 140 ND 141
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 21/127 (16%)
Query: 56 SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTA 115
S DAK+ +N + K +KPA+ K+P D NKPKRPP+A
Sbjct: 10 SKKADAKLAVNKKGAAATK----GGRKPAKGKEPK--------------DPNKPKRPPSA 51
Query: 116 FFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
FF+FM+DFRK++K+ +PD+K V+ V K AG KWK++++ EK PY KA + KA+Y K M+
Sbjct: 52 FFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMK 111
Query: 176 GNGDYNE 182
YN+
Sbjct: 112 A---YNK 115
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK++ + HP++K V+ V K AG KWK M+D EK PY+ K+
Sbjct: 29 DPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSE 88
Query: 165 ELKADYSKAMEG-NGDYNEVEDKADNEVEDKAENEV 199
+ K DY K M N E D E DK+ +EV
Sbjct: 89 KRKQDYEKNMRAYNKKQAEGPTGGDEEESDKSISEV 124
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FRK+YKE HP +K V+ V K G+KWK+M++ EK PY+ KA
Sbjct: 40 DPNKPKRPASAFFVFMEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAE 99
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENE 198
+ K +Y K M+ YN+ + + VE++ E+E
Sbjct: 100 KRKVEYEKNMKA---YNKKQAEGTKVVEEEDESE 130
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 27/151 (17%)
Query: 90 TSTEPRAKRL-----RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
TST+ R K +K D N+PKRPP+AFF+F++DFRKE+ A+P++K V V K A
Sbjct: 11 TSTDQRLKTRGRKPGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAA 70
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVE----DKAENEVE 200
G +WK+MT+E+K PY+ KA K +Y K M+ YN N E DK+++EV
Sbjct: 71 GARWKSMTEEDKAPYVAKAESRKTEYLKTMQ---QYNMKLASGTNRGEEDDSDKSKSEV- 126
Query: 201 DKAEKEDGDEGGSEKDVAEKEVQQDEENLDD 231
DE GSE EV EE DD
Sbjct: 127 --------DEAGSE------EVFMQEEEDDD 143
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFRK+YKE+HP++K V V K G+KWK++++ EK P+ KA
Sbjct: 35 DPNKPKRPASAFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPFAAKAE 94
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
+ K +Y+K M YN+ +++ DK+++EV
Sbjct: 95 KRKFEYNKDMAA---YNKRLAGGNDDESDKSKSEV 126
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 3/98 (3%)
Query: 78 INKKKPAERKKPTSTEPRAK-RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
I K+K A + +S + AK ++ KKD D KPKRPP++FF+F+++FRK YK+ HP+ K
Sbjct: 26 IGKRKAALKATESSKKRAAKEKITKKDPD--KPKRPPSSFFVFLEEFRKIYKQEHPNMKA 83
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
V+ V K GEKWK+M+ EK PY KAA K+DY K M
Sbjct: 84 VSAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLM 121
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 3/98 (3%)
Query: 78 INKKKPAERKKPTSTEPRAK-RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
I K+K A + +S + AK ++ KKD D KPKRPP++FF+F+++FRK YK+ HP+ K
Sbjct: 26 IGKRKAALKATESSKKRAAKEKITKKDPD--KPKRPPSSFFVFLEEFRKIYKQEHPNMKA 83
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
V+ V K GEKWK+M+ EK PY KAA K+DY K M
Sbjct: 84 VSAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLM 121
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 5/91 (5%)
Query: 90 TSTEPRAKRL-----RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
TST+ R K +K D N+PKRPP+AFF+F++DFRKE+ A+P++K V V K A
Sbjct: 11 TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAA 70
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
G +WK MTDE+K PY+ KA +K +Y K ++
Sbjct: 71 GARWKAMTDEDKAPYVAKAESIKTEYIKNVQ 101
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 57/71 (80%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KA
Sbjct: 62 TDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKA 121
Query: 164 AELKADYSKAM 174
A+ K DY+K M
Sbjct: 122 AKRKVDYNKTM 132
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KAA
Sbjct: 42 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAA 101
Query: 165 ELKADYSKAM 174
+ KA+Y+K M
Sbjct: 102 KRKAEYNKTM 111
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KAA
Sbjct: 42 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAA 101
Query: 165 ELKADYSKAM 174
+ KA+Y+K M
Sbjct: 102 KRKAEYNKTM 111
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+PPTAFF F+DDFRKE++E +PD K + V K GEKWK MT EEK Y D A
Sbjct: 69 DVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIAT 128
Query: 165 ELKADYSKAM 174
E +A++ KAM
Sbjct: 129 EKRAEFDKAM 138
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
E K + KKP R K K D NKPKRP +AFF+FM+DFR+ +K+ +P +K
Sbjct: 385 TETRSSKLSVTKKPAKGAGRGKAAAK---DPNKPKRPASAFFVFMEDFRETFKKENPKNK 441
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
V V K AG+KWK+++D EK PY+ KA + K +Y K ++ E K D E DK+
Sbjct: 442 SVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEE-SDKS 500
Query: 196 ENEVEDKAEKEDGDEGGSE 214
+EV D+ + EDG E SE
Sbjct: 501 VSEVNDEDDAEDGSEEVSE 519
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
AE K + KKP AK + D NKPKRP +AFF+FM+DFR YKE HP +K
Sbjct: 529 AETRSTKLSVTKKP------AKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 582
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKA 195
V V K GEKWK+++D EK PY+ KA + K +Y K M+ E K D E DK+
Sbjct: 583 SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEE-SDKS 641
Query: 196 ENEV 199
+EV
Sbjct: 642 VSEV 645
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KAA
Sbjct: 70 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAA 129
Query: 165 ELKADYSKAM 174
+ KA+Y+K M
Sbjct: 130 KRKAEYNKTM 139
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 57/71 (80%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KA
Sbjct: 17 TDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKA 76
Query: 164 AELKADYSKAM 174
A+ K DY+K M
Sbjct: 77 AKRKVDYNKTM 87
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 55/71 (77%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM+DFRK + + +P++K V+ V K AG KWK+M++ EK PY+ KA
Sbjct: 40 DPNKPKRPPSAFFVFMEDFRKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAE 99
Query: 165 ELKADYSKAME 175
+ KADY K M+
Sbjct: 100 KRKADYEKTMK 110
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 18/127 (14%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD---- 153
R K + D NKPKRPP+AFF+FM+ FRK+YKE HP+ K V+ + K G+KWK+MTD
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIRG 76
Query: 154 --------EEKKPYLDKAAELKADYSKAMEGNGDYN--EVEDKADNEVEDKAENEVEDKA 203
++K P++ KA +LKA+Y+K ++ YN + A + DK+++EV D+
Sbjct: 77 YVVVAVPCKDKAPFVTKAEKLKAEYTKKIDA---YNNKQAGGPATSGDSDKSKSEVNDED 133
Query: 204 EKEDGDE 210
E GDE
Sbjct: 134 EGS-GDE 139
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 54/70 (77%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+F+++FRK YK+ HP+ K V+ V K GEKWK++++ +K PY KAA
Sbjct: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAA 111
Query: 165 ELKADYSKAM 174
+ K+DY K M
Sbjct: 112 KRKSDYEKLM 121
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 18/127 (14%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD---- 153
R K + D NKPKRPP+AFF+FM+ FRK+YKE HP+ K V+ + K G+KWK+MTD
Sbjct: 17 RKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIGG 76
Query: 154 --------EEKKPYLDKAAELKADYSKAMEGNGDYN--EVEDKADNEVEDKAENEVEDKA 203
++K P++ KA +LKA+Y+K ++ YN + A + DK+++EV D+
Sbjct: 77 YVVVAVPCKDKAPFVTKAEKLKAEYTKKIDA---YNNKQAGGPATSGDSDKSKSEVNDED 133
Query: 204 EKEDGDE 210
E GDE
Sbjct: 134 EGS-GDE 139
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
R ++ KK D N+PK+PP+ FF+F+DDFRKE+ A+PD+K V V + AG+KWK MT+E
Sbjct: 20 RGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
Query: 155 EKKPYLDKAAELKADYSKAME 175
E+ P++ K+ K +Y+ M+
Sbjct: 80 ERAPFVAKSQSKKTEYAVTMQ 100
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 5/91 (5%)
Query: 90 TSTEPRAK-RLRKKDS----DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
TST+ R K R RK + D N+PKRPP+AFF+F++DFRKE+ A+P++K V V K A
Sbjct: 11 TSTDQRLKTRGRKAGNKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAA 70
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
G +WK+MTDE+K PY+ KA K +Y K ++
Sbjct: 71 GARWKSMTDEDKAPYVAKAESRKTEYIKNVQ 101
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KAA
Sbjct: 55 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAA 114
Query: 165 ELKADYSKAM 174
+ KA+Y+K M
Sbjct: 115 KRKAEYNKTM 124
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KAA
Sbjct: 60 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAA 119
Query: 165 ELKADYSKAM 174
+ KA+Y+K M
Sbjct: 120 KRKAEYNKTM 129
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 71/104 (68%), Gaps = 4/104 (3%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ +K D NKPKRPP+AFF+FM DFR++YK+ HP++K V V K GE WK+M++E+K
Sbjct: 25 KQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDK 84
Query: 157 KPYLDKAAELKADYSKAMEGNGDYN-EVEDKADNEVEDKAENEV 199
PY +A + K +Y A + YN ++E K + + DK+++EV
Sbjct: 85 APYAARALKKKEEYEVATQA---YNKKLEGKDEEDGSDKSKSEV 125
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
Length = 123
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 5/106 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N+PK+P TAFF+F+++FR+ YK+ HPD KGV + K G+ WK+++D+EK+PY KAA
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 77
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDE 210
+ KADY K +E YN + K + E E+EV+ K+ D DE
Sbjct: 78 KRKADYDKDLEA---YN--KKKEEEEDGSAGESEVKSKSAGNDDDE 118
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%), Gaps = 3/77 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FRK+YKE HP +K V+ V K G+KWK++++ EK PY+ KA
Sbjct: 43 DPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAE 102
Query: 165 ELKADYSKAMEGNGDYN 181
+ K +Y+K+M+ YN
Sbjct: 103 KRKTEYNKSMQA---YN 116
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK + + HPD+K V+ V K AG KWK M+D EK PY+ K+
Sbjct: 40 DPNKPKRPPSAFFVFMEEFRKVFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSE 99
Query: 165 ELKADYSKAM 174
+ K +Y K M
Sbjct: 100 KRKVEYEKNM 109
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
Length = 134
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 8/106 (7%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N+PK+P TAFF+F+++FR+ YK+ HPD KGV + K G+ WK+++D+EK+PY KAA
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAA 91
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDE 210
+ KADY K +E YN + K D E+EV+ K+ D DE
Sbjct: 92 KRKADYDKDLEA---YN--KKKEDGSA---GESEVKSKSAGNDDDE 129
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 8/115 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KKP R+K K D NKPKRP +AFF+FM+DFR+ +K+ HP +K V V K AG+
Sbjct: 19 KKPAKGAGRSKAAAK---DPNKPKRPASAFFVFMEDFRETFKKEHPKNKSVAAVGKAAGD 75
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEV 199
KWK+++D EK PY+ KA + K DY K M+ YN+ E ++E DK+ +EV
Sbjct: 76 KWKSLSDAEKAPYVAKAEKRKVDYEKNMKA---YNKKLEEGPKEDEESDKSVSEV 127
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 5/91 (5%)
Query: 90 TSTEPRAKRL-----RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
TST+ R K +K D N+PKRPP+AFF+F++DFRKE+ A+P++K V V K A
Sbjct: 11 TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAA 70
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
G +WK+MTDE+K PY+ KA K +Y K ++
Sbjct: 71 GARWKSMTDEDKAPYVAKAESRKTEYIKNVQ 101
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
ST K+ K D NKPKRP +AFF+FM++FR++YK+ HP +K V V K G+KWK+
Sbjct: 21 STTKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKS 80
Query: 151 MTDEEKKPYLDKAAELKADYSKAME 175
+++ EK+PY+DKA + K +Y K M+
Sbjct: 81 LSEAEKRPYVDKAEKRKVEYEKNMK 105
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 93 EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
+P R K D NKPKR P+AFF+FM++FRKE+KE +P +K V V K AG++WK+++
Sbjct: 36 KPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 95
Query: 153 DEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
+ +K PY+ KA +LK +Y+KA+ YN+ E A
Sbjct: 96 ESDKAPYVAKANKLKLEYNKAIAA---YNKGESTA 127
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 69/102 (67%), Gaps = 7/102 (6%)
Query: 80 KKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
+K PAE KPT E R ++ KKD NKPKR P+AFF+F++DFR +K+ +P+ K V+
Sbjct: 28 RKAPAE--KPTKRETRKEKKAKKDP--NKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSA 83
Query: 140 VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181
V K G+KWK+M+ EK PY +KAA+ KA+Y K M+ YN
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDA---YN 122
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFR YKE HP +K V V K GEKWK+++D EK PY+ KA
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 165 ELKADYSKAMEGNGDYNE 182
+ K +Y K M+ YN+
Sbjct: 91 KRKVEYEKNMKA---YNK 105
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 12/124 (9%)
Query: 80 KKKPAER--KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV 137
+K PAE+ K+ T E +AK+ D NKPKR P+AFF+F++DFR +K+ +P+ K V
Sbjct: 28 RKAPAEKATKRETRKEKKAKK------DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAV 81
Query: 138 TGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
+ V K G+KWK+M+ EK PY +KAA+ KA+Y K M+ YN+ ++ +E E K+ +
Sbjct: 82 SAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDA---YNKNMEEGSDESE-KSRS 137
Query: 198 EVED 201
EV D
Sbjct: 138 EVND 141
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 5/97 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFR YKE HP +K V V K GEKWK+++D EK PY+ KA
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 165 ELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEV 199
+ K +Y K M+ YN+ E ++E DK+ +EV
Sbjct: 91 KRKVEYEKNMKA---YNKKLEEGPKEDEESDKSVSEV 124
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 93 EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
+P R K D NKPKR P+AFF+FM++FRKE+KE +P +K V V K AG++WK+++
Sbjct: 25 KPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 84
Query: 153 DEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
+ +K PY+ KA +LK +Y+KA+ YN+ E A
Sbjct: 85 ESDKAPYVAKANKLKLEYNKAIAA---YNKGESTA 116
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
DS KPK+PPTAFF F++DFRK++++ +PD K + + K GEKWK MT EEK Y D A
Sbjct: 106 DSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACGEKWKMMTYEEKVKYYDIAT 165
Query: 165 ELKADYSKAM------EGNGDYNEVED 185
E +A++ KAM + +G++ EVED
Sbjct: 166 EKRAEFDKAMAEYIKKKESGEFEEVED 192
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 54/70 (77%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPPTAFF+F+++FR+ +K +P+ KGVT V K GEKWK+M++ EK+P++ KA
Sbjct: 49 DPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFMTKAV 108
Query: 165 ELKADYSKAM 174
+ K++Y K +
Sbjct: 109 QKKSEYDKTI 118
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 4/97 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK YKE HP++K V V K G+ WK +++ EK PY KA
Sbjct: 32 DPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAAVGKAGGDAWKKLSEAEKAPYQAKAE 91
Query: 165 ELKADYSKAMEGNGDYNEVE-DKADNEVEDKAENEVE 200
+ KA+Y K M+ YN + A+ + DK+++EV
Sbjct: 92 KRKAEYQKNMDA---YNRKQAGDAEEDESDKSKSEVH 125
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ RK D NKPKRPP+AFF+FM +FR+++K+ HP++K V V K GEKWK+++D EK
Sbjct: 25 KQSRKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGEKWKSLSDAEK 84
Query: 157 KPYLDKAAELKADYSKAMEGNGDYN-EVEDKADNEVE-DKAENEV 199
P++ A + K +Y K + YN ++E K E E DK+++EV
Sbjct: 85 APFVATAEKKKQEYEKTISA---YNKQLEGKNSEEDESDKSKSEV 126
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 49/60 (81%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
S KPKRPP+AFF+FM +FR+EY+ HP +K V V+K AGEKW+ M+D+EK+PY+D+A +
Sbjct: 30 SGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQ 89
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 5/91 (5%)
Query: 90 TSTEPRAKRL-----RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
TST+ R K +K D N+PKRPP+AFF+F++DFRKE+ A+P++K V V K A
Sbjct: 11 TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAA 70
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
G +WK MTDE+K PY+ KA K +Y K ++
Sbjct: 71 GARWKAMTDEDKAPYVAKAESRKTEYIKNVQ 101
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 79/126 (62%), Gaps = 8/126 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KKP R K K D NKPKRP +AFF+FM+DFR+ +K+ +P +K V V K AG+
Sbjct: 19 KKPAKGAGRGKAAAK---DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGD 75
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEVEDKAE 204
KWK+++D EK PY+ KA + K +Y K ++ YN+ E ++E DK+ +EV D+ +
Sbjct: 76 KWKSLSDSEKAPYVAKAEKRKVEYEKNIKA---YNKKLEEGPKEDEESDKSVSEVNDEDD 132
Query: 205 KEDGDE 210
EDG E
Sbjct: 133 AEDGSE 138
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 93 EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
+P R K D NKPKR P+AFF+FM++FRKE+KE +P +K V V K AG++WK+++
Sbjct: 25 KPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 84
Query: 153 DEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
+ +K PY+ KA +LK +Y+KA+ YN+ E A
Sbjct: 85 ESDKAPYVAKANKLKLEYNKAIAA---YNKGESTA 116
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FRK++ E +P++K V+ V K AG+KWK+M+D EK PY+ KA
Sbjct: 35 DPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKAD 94
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVED 193
+ K +Y K M+ YN+ + N E+
Sbjct: 95 KRKVEYEKNMKA---YNKKQASGANAAEE 120
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKRPP+AFF+FM+DFRK +KE +PD+K V+ V K AG+KWK++T EK PY KAA+ KA
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAAEKAPYEAKAAKRKA 61
Query: 169 DYSKAM 174
+Y+K M
Sbjct: 62 EYTKTM 67
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM+DFR+ YK+ HP++K V V K GEKWK+++D EK P++ KA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRQTYKKDHPNNKSVAAVGKAGGEKWKSLSDSEKAPFVAKAD 93
Query: 165 ELKADYSKAMEGNGDYNE 182
+ K +Y K M+ YN+
Sbjct: 94 KRKVEYEKTMKA---YNK 108
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM DFR++YK+ HP++K V V K GE+WK++++EEK PY+D+A
Sbjct: 2 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRAL 61
Query: 165 ELKADYSKAMEG 176
+ K +Y ++
Sbjct: 62 KKKEEYEITLQA 73
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 10/113 (8%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
K+ T E RAK+ D NKPKR P+AFF+F++DFR+ +K+ +P+ K V+ V K G+
Sbjct: 37 KRETRKEKRAKK------DPNKPKRAPSAFFVFLEDFRQTFKKENPNVKAVSAVGKAGGQ 90
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
KWK+M+ EK PY +KAA+ KA+Y K M+ YN+ ++ +E E K+ +EV
Sbjct: 91 KWKSMSQAEKAPYEEKAAKRKAEYEKLMDA---YNKNMEEGSDESE-KSRSEV 139
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K + K D N PKRP T FF+FM++FRK YKE PD+K V K GEKWK+M+D EK
Sbjct: 27 KSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEK 86
Query: 157 KPYLDKAAELKADYSKAMEG 176
PY +KA + KA+Y A+E
Sbjct: 87 APYAEKALKRKAEYEIALEA 106
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 68/96 (70%), Gaps = 4/96 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+F+++FRK +K +P+ K V+ V K GEKWK+++ EK PY KAA
Sbjct: 49 DPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYESKAA 108
Query: 165 ELKADYSKAMEGNGDYNEVE-DKADNEVEDKAENEV 199
+ KA+Y K ++ Y++ + AD+E DK+++EV
Sbjct: 109 KRKAEYEKLIKA---YDKKQASSADDEESDKSKSEV 141
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 52/70 (74%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM++FRK + + HP++K V+ V K AG KWK M+D EK PY+ K+
Sbjct: 40 DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSE 99
Query: 165 ELKADYSKAM 174
+ K +Y K M
Sbjct: 100 KRKVEYEKNM 109
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKR P+AFF+FM +FR+E+K+ +P +K V V K AGE+WK++++ EK PY+ KA
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKAN 97
Query: 165 ELKADYSKAMEGNGDYNEVED 185
+LK +Y+KA+ YN+ E
Sbjct: 98 KLKGEYNKAIAA---YNKGES 115
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NK KRPP+AFF+FM++FRK++ + HP++K V+ V K AG KWK M+D EK PY+ K+
Sbjct: 41 DPNKLKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSE 100
Query: 165 ELKADYSKAMEG-NGDYNEVEDKADNEVEDKAENEV 199
+ K DY K M N E D E DK+ +EV
Sbjct: 101 KRKQDYEKNMRAYNKKQAEGPTGGDEEESDKSISEV 136
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 8/85 (9%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY KA
Sbjct: 41 TDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKA 100
Query: 164 AELKADYSKAM--------EGNGDY 180
A+ K DY+K M +G G
Sbjct: 101 AKRKVDYNKTMVAYNKKLADGGGKK 125
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 52/70 (74%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FR++YK+ HP +K V V K GEKWK+++D EK PY+ KA
Sbjct: 35 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAE 94
Query: 165 ELKADYSKAM 174
+ K +Y K M
Sbjct: 95 KRKVEYEKNM 104
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKR P+AFF+FM +FR+E+K+ +P +K V V K AGE+WK++++ EK P++ KA
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKAN 97
Query: 165 ELKADYSKAMEGNGDYNEVED 185
+LK +Y+KA+ YN+ E
Sbjct: 98 KLKGEYNKAI---ASYNKGES 115
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKR +AFF+FM+ FRKE+KE +P +K V V K GEKWK+M+D EK P++ KA
Sbjct: 36 DPNKPKRAASAFFVFMEGFRKEFKEKNPKNKSVAAVGKAGGEKWKSMSDAEKAPFVKKAE 95
Query: 165 ELKADYSKAM 174
+LKA+Y K M
Sbjct: 96 KLKAEYEKKM 105
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 70/103 (67%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ +K D NKPKRPP+AFF+FM +FR++YK+ HP +K V V K G+KWK+++D EK
Sbjct: 25 KQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKSVAVVGKAGGDKWKSLSDAEK 84
Query: 157 KPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
P++ +A + K +Y K++ E ++ ++ E DK+++EV
Sbjct: 85 APFVARAEKKKEEYDKSILAYNRKLEGKNPSEEEKSDKSKSEV 127
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Query: 93 EPRAK-RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
+P AK R K D NKPKR P+AFF+FM++FRKE+KE +P +K V V K AG++WK++
Sbjct: 25 KPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSL 84
Query: 152 TDEEKKPYLDKAAELKADYSKAM 174
T+ +K PY+ KA +LKA+Y++ +
Sbjct: 85 TEADKAPYVAKANKLKAEYNRPL 107
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F++DFRK +K +P+ KGV+ V K GEKWK++T EK PY KAA+ KA+Y
Sbjct: 52 RPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEY 111
Query: 171 SKAMEGNGDYNEVEDKAD--NEVEDKAENEVEDKAEKEDGDEG 211
K + N N+ AD +E DK+++E+ D+ ++ G EG
Sbjct: 112 EKLI--NAYNNKQASTADDVDEESDKSKSEINDEEDEASGQEG 152
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Query: 71 VVEKPAEINKKKPAERKKPTSTEP--RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
V EK ++ K +RK P EP R + KK D N PKRP TAFF+F+++FR+ +K
Sbjct: 18 VKEKVTKVQDKDIKKRKGPVK-EPKGRKAKSAKKAKDPNAPKRPATAFFIFLNEFREVFK 76
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+ +P+ KGV V K GEKWK+M++ EK+PY+ KA + K++Y K +
Sbjct: 77 KENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAVQKKSEYDKTL 122
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 8/153 (5%)
Query: 28 LMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIK---MNLEAQVVEKPAEINKKKPA 84
+ R +GS F RC++C K++ A + H C +AK K ++ QV+++ + K A
Sbjct: 26 MKRSANGSGFTRCDKCEKDIAAARVDNHDCEQEAKTKELLTKMKKQVMKQ--VVKKSDGA 83
Query: 85 ERKKPTSTEPRA---KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
+ +EP+ + + K D N PKRP + F +FM+ FRK YK+A+P+SKGV A
Sbjct: 84 IKSTKRKSEPKVIKKQAKKVKTKDPNAPKRPASGFLVFMESFRKTYKDANPESKGVAAAA 143
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
K GEKWK MT+EE+ PY A K +Y +AM
Sbjct: 144 KAGGEKWKQMTEEERAPYNKDAEARKLNYEQAM 176
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 53/70 (75%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+FM+DFRK++KE +P++K V+ V K KWK M+ EK P+ +AA
Sbjct: 39 DPNKPKRPPSAFFVFMEDFRKQFKEKNPNNKQVSVVGKACWGKWKTMSAAEKAPFEARAA 98
Query: 165 ELKADYSKAM 174
+ KADY+K M
Sbjct: 99 KRKADYNKVM 108
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 53/70 (75%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP TAFF+F+++FR+ +K+ +P+ KGV V K GEKWK+M++ EK+PY+ KA
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAV 112
Query: 165 ELKADYSKAM 174
+ K++Y K +
Sbjct: 113 QKKSEYDKTL 122
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 66/97 (68%), Gaps = 5/97 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FR+ YK+ HP++K V V K G+KWK+++D EK PY KA
Sbjct: 31 DPNKPKRPASAFFVFMEEFRETYKKEHPNNKSVAAVGKAGGQKWKSLSDSEKAPYQAKAD 90
Query: 165 ELKADYSKAMEGNGDYNEVEDKA--DNEVEDKAENEV 199
+ K +Y K M YN+ +++ ++E DK+ +EV
Sbjct: 91 KRKVEYEKNMNA---YNKKQEEGPKEDEESDKSVSEV 124
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 6/98 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FR++YK+ HP +K V V K G+KWK++++ EK PY+ KA
Sbjct: 31 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAE 90
Query: 165 ELKADYSKAMEGNGDYN--EVEDKADNEVE-DKAENEV 199
+ K +Y K M+ YN + E D +VE DK+ +EV
Sbjct: 91 KRKVEYEKNMKA---YNKRQAEGPKDEDVESDKSVSEV 125
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%), Gaps = 10/98 (10%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+FM +FR+EY+ HP++K V V+K AGEKW++M+D +K PY++KA + K DY
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDADKAPYVEKAGQKKQDY 95
Query: 171 SKAMEGNGDYNEVEDKA-------DNEVEDKAENEVED 201
K +++ E + D+E DK+++EV+D
Sbjct: 96 EKT---KATFDKKESTSSKKTKTQDDEGSDKSKSEVDD 130
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 55/69 (79%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K + D NKPKRPP+AFF+FM++FRK++KE +P++K V+ V K AG+KWK+M+ EK PY
Sbjct: 38 KAEKDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYE 97
Query: 161 DKAAELKAD 169
KAA+ KA+
Sbjct: 98 AKAAKRKAE 106
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+ KPK+PPTAFF F++DFRKE++E +PD K + + K GEKWK MT EEK Y D A
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIAT 115
Query: 165 ELK-------ADYSKAMEGNGDYNEVEDKAD 188
+ + A+++K ME NG+++E +D+++
Sbjct: 116 KKREEFDNAMAEFNKKME-NGEFDETDDESE 145
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K+ D+ KPK+PPTAFF F++DFRKE+K+ +PD K + + K GEKWK MT EEK Y
Sbjct: 56 KQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMTFEEKVQYY 115
Query: 161 DKAAELKADYSKAMEGNGDYN 181
D A E +A++ +A +YN
Sbjct: 116 DIATEKRAEFDRA---TTEYN 133
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 87 KKPTSTEPRAKRLRKKDS---DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
KKPT RK D NKPKRP +AFF+FM++FR++YK HP +K V V K
Sbjct: 19 KKPTKGGGGGAAARKSGKAAKDPNKPKRPASAFFVFMEEFREQYKREHPKNKSVAAVGKA 78
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
G+KWK++++ EK P++ KA + K +Y K M+ YN+
Sbjct: 79 GGDKWKSLSEAEKAPFVAKADKRKVEYEKKMKA---YNK 114
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRP TAF LFM DFRKE P+ GV +AK GE+W++M++E+K+PY+++
Sbjct: 254 DANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQN 312
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQ 224
E K Y + ME +Y + A+++ + + + A + D+GG +D + QQ
Sbjct: 313 EEKMKYEQNME---EYRRKQQTAESQAAKLQQQQQQAAAAAQADDQGGGTRD----QQQQ 365
Query: 225 DEENLDD 231
+N D
Sbjct: 366 QHDNGGD 372
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKR TA+ F +R+E K++ + KE KW M+DE+K+P+L AA +
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 240
Query: 169 DYSKAM 174
Y + M
Sbjct: 241 RYKREM 246
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+ KP++PPTAFF F++DFRKE++E +PD + + + K GEKWK MT EEK Y D A
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMTYEEKVQYYDIAT 117
Query: 165 ELK-------ADYSKAMEGNGDYNEVEDKAD 188
+ + A+++K ME NG+++E +D+++
Sbjct: 118 KKREEFDSAMAEFNKKME-NGEFDETDDESE 147
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FR++YK+ HP +K V V K G+KWK+++ EK PY+ KA
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKAD 98
Query: 165 ELKADYSKAM 174
+ K +Y K M
Sbjct: 99 KRKVEYEKKM 108
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 52/70 (74%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FR++YK+ HP +K V V K G+KWK++++ EK PY+ KA
Sbjct: 35 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAE 94
Query: 165 ELKADYSKAM 174
+ K +Y K +
Sbjct: 95 KRKVEYEKKL 104
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 67/99 (67%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D NKPKRPP+AFF+FM +FR++YK+ HP++K V V K G++WK+M+D +K PY
Sbjct: 28 KKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVAVVGKAGGDRWKSMSDADKAPYQ 87
Query: 161 DKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
KA + K +Y + M+ E + ++ + DK+++EV
Sbjct: 88 AKAEKKKEEYERTMQAYNKKQESKGASEEDESDKSKSEV 126
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRP TAF LFM DFRKE P+ GV +AK GE+W++M++E+K+PY+++
Sbjct: 290 DANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQN 348
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQ 224
E K Y + ME +Y + A+++ + + + A + D+GG +D + QQ
Sbjct: 349 EEKMKYEQNME---EYRRKQQTAESQAAKLQQQQQQAAAAAQADDQGGGTRD----QQQQ 401
Query: 225 DEENLDD 231
+N D
Sbjct: 402 QHDNGGD 408
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKR TA+ F +R+E K++ + KE KW M+DE+K+P+L AA +
Sbjct: 217 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 276
Query: 169 DYSKAM 174
Y + M
Sbjct: 277 RYKREM 282
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 66/98 (67%), Gaps = 4/98 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AF +F+++FRK +K +P K V+ V K GEKWK+++ EK PY KAA
Sbjct: 49 DPNKPKRPPSAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAA 108
Query: 165 ELKADYSKAMEGNGDYNEVE-DKADNEVEDKAENEVED 201
+ KA+Y K ++ Y + + AD++ DK+++EV D
Sbjct: 109 KRKAEYEKLIKA---YEKKQASSADDDESDKSKSEVND 143
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KKP R K K D NKPKRP +AFF+FM+DFR+ +K+ +P +K V V K AG+
Sbjct: 19 KKPAKGAGRGKAAAK---DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGD 75
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEV 199
KWK+++D EK PY+ KA + K +Y K ++ YN+ E ++E DK+ +EV
Sbjct: 76 KWKSLSDSEKAPYVAKAEKRKVEYEKNIKA---YNKKLEEGPKEDEESDKSVSEV 127
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KKP R K K D NKPKRP +AFF+FM+DFR+ +K+ +P +K V V K AG+
Sbjct: 19 KKPAKGAGRGKAAAK---DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGD 75
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV--EDKADNEVEDKAENEV 199
KWK+++D EK PY+ KA + K +Y K ++ YN+ E ++E DK+ +EV
Sbjct: 76 KWKSLSDSEKAPYVAKAEKRKVEYEKNIKA---YNKKLEEGPKEDEESDKSVSEV 127
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FR++YK+ HP +K V V K G+KWK+++ EK PY+ KA
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKAD 98
Query: 165 ELKADYSKAME 175
+ K +Y K M+
Sbjct: 99 KRKVEYEKKMK 109
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 47/70 (67%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D +PK+PPTAFF FM+DFRK YKE +P K + V K GEKW MT EE+ Y D A
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIAT 104
Query: 165 ELKADYSKAM 174
E +A+Y KA+
Sbjct: 105 EKRAEYEKAV 114
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%)
Query: 75 PAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
P ++ KPA+ + + KK D NKPKRPP+AFF+FM +FR+ +K+ +P +
Sbjct: 2 PKAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSN 61
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
K V V K G++WK ++D +K P++ KA +LK +Y K M
Sbjct: 62 KSVAVVGKAGGKEWKALSDADKAPFIAKADKLKEEYEKTM 101
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 78 INKKKPAERKKPTSTE--PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
++ +K +RK E P+ K+ +K D NKPKRPP+AFF+F++DFRK +K +P+ K
Sbjct: 18 VDDRKVGKRKAAAKPEKVPKTKKEKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVK 77
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
V+ V K GEKWK++T EK PY KAA+ K +Y K M
Sbjct: 78 AVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLM 116
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRP TAF LFM DFRKE P+ GV +AK GE+W++M++E+K+PY+++
Sbjct: 275 DANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQN 333
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQ 224
E K Y + ME +Y + A+++ + + + A + D+GG +D + QQ
Sbjct: 334 EEKMKYEQNME---EYRRKQQTAESQAAKLQQQQQQAAAAAQADDQGGGTRD----QQQQ 386
Query: 225 DEENLDD 231
+N D
Sbjct: 387 QHDNGGD 393
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKR TA+ F +R+E K++ + KE KW M+DE+K+P+L AA +
Sbjct: 202 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 261
Query: 169 DYSKAM 174
Y + M
Sbjct: 262 RYKREM 267
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 6/100 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+F+++FRK +K+ +P V V K G KWK+M+ EK PY KAA
Sbjct: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPSVTSVAAVGKAGGAKWKSMSSAEKAPYEAKAA 110
Query: 165 ELKADYSKAMEGNGDYN-EVEDKADN--EVEDKAENEVED 201
+ K +Y K M YN + E AD+ E D++++EV D
Sbjct: 111 KKKDEYGKLMNA---YNKKQESTADDGEEESDRSKSEVND 147
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRP TAF LFM DFRKE P+ GV +AK GE+W++M++E+K+PY+++
Sbjct: 254 DANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQN 312
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQ 224
E K Y + ME +Y + A+++ + + + A + D+GG +D + QQ
Sbjct: 313 EEKMKYEQNME---EYRRKQQTAESQAAKLQQQQQQAAAAAQADDQGGGTRD----QQQQ 365
Query: 225 DEENLDD 231
+N D
Sbjct: 366 QHDNGGD 372
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKR TA+ F +R+E K++ + KE KW M+DE+K+P+L AA +
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMSDEDKQPFLSAAARDRE 240
Query: 169 DYSKAM 174
Y + M
Sbjct: 241 RYKREM 246
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 52/70 (74%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRP +AFF+FM++FR++YK+ HP +K V V K G++WK+M++ EK P++ KA
Sbjct: 34 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDRWKSMSESEKAPFVAKAE 93
Query: 165 ELKADYSKAM 174
+ K +Y K +
Sbjct: 94 KRKIEYEKKL 103
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 66 NLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRK 125
NLE V K +E ++ R +P + + + + PK+P TAFF F+DDFRK
Sbjct: 22 NLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDDFRK 79
Query: 126 EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+Y+E +PD K + + K GEKWK MT EEK Y D A E + ++ +AM
Sbjct: 80 QYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAM 128
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 5/105 (4%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K+ +K D NKPK PP+AFF+FM +FR+++K+ HP++K V V K G+KWK+++D EK
Sbjct: 25 KQSKKAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAEK 84
Query: 157 KPYLDKAAELKADYSKAMEGNGDYN-EVEDKADNEVE-DKAENEV 199
P++ A + K +Y K + YN ++E K E E DK+++EV
Sbjct: 85 APFVATAEKKKQEYEKTILA---YNKKLEGKNSEEDESDKSKSEV 126
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTE--PRAKRLRKKDSDSNKPKRPPTAFFLFMDD 122
M +Q KP + P +P+ST+ PR K K D PK+PPTAFF FM+D
Sbjct: 1 MKTRSQTSPKPLKTVAMAP----RPSSTKRKPRPKPAGK--GDPRAPKKPPTAFFYFMED 54
Query: 123 FRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
FRK YK+ P K + + K GEKW MT EEK Y D A E +A++ KAM
Sbjct: 55 FRKIYKQEKPSVKSMQEIGKACGEKWNTMTFEEKVKYYDIATEKRAEFEKAM 106
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F+++FR+ +K+ +P+ K V+ V K GEKWK++TD EK PY KAA+ K++Y
Sbjct: 101 RPPSAFFVFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKSEY 160
Query: 171 SKAMEGNGDYNEVEDKADNEVEDKAE 196
K M YN+ ++ + +E ++ +E
Sbjct: 161 EKLMNA---YNKKQESSADEADEGSE 183
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D +PK+PPTAFF FM+DFRK YKE +P K + V K GEKW MT EE+ Y D A
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIAT 104
Query: 165 ELKADYSKAM 174
E +A+Y K +
Sbjct: 105 EKRAEYEKPV 114
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 105 DSNKPKRPPTAFF----LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
D+ KPK+ P+AFF LFM+DFRKE++E +PD K + + K GEKWK MT EEK Y
Sbjct: 41 DAMKPKKSPSAFFPLFSLFMEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMTYEEKVKYY 100
Query: 161 DKAAELKADYSKAM 174
D A+E + ++ +AM
Sbjct: 101 DIASEKRIEFDRAM 114
>gi|148910368|gb|ABR18262.1| unknown [Picea sitchensis]
Length = 122
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 7 SNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMN 66
SN P+ RKRV A + RG DGS F CE+C +VP +H C L+A+IK +
Sbjct: 2 SNPPRIRKRVGADPSK-----FKRGVDGSGFITCEKCGFSVPAGAADVHDCKLEARIKSS 56
Query: 67 LEAQ-----VVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMD 121
LE V +++++K+P + P+ K+ D N+PK+P AFF+FM+
Sbjct: 57 LECHHTIDSAVRGHSQLSRKQPRTEEVEIQKAPKCA---KRPKDPNRPKKPQPAFFVFME 113
Query: 122 DFRKEYKEA 130
+FRK+ +
Sbjct: 114 EFRKKIQRG 122
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKR P+AFF+F+++FRKEYKE HPD+K V V K AG KW++M+D +K PY++K+
Sbjct: 37 DPNKPKRAPSAFFVFLEEFRKEYKEKHPDNKSVAAVGKAAGAKWRSMSDSDKAPYVNKSN 96
Query: 165 ELKADYSKAMEGNGDYNEVEDK-ADNEVEDKAENEV 199
+ KA+ K N E + A ++ DK+++EV
Sbjct: 97 KRKAEVQKTAAVNAKKQETSSRAAADDDSDKSKSEV 132
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 78 INKKKPAERKKPTSTE--PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
++ +K +RK E P+ K+ +K D NKPKRPP+AFF+F++DFRK +K +P+ K
Sbjct: 18 VDDRKVGKRKAAAKPEKVPKTKKEKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVK 77
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
V+ V K G KWK++T EK PY KA + K +Y K M+
Sbjct: 78 AVSAVGKAGGGKWKSLTKAEKAPYEAKAVKRKVEYEKLMD 117
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS P KR +K D N PKRPP+ FF+F + R + K HP S G+ VAK+ GE W
Sbjct: 76 TSYGPPGKRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-SFGIGDVAKKLGEAWN 134
Query: 150 NMTDEEKKPYLDKAAELKADYSK 172
N+TD K+PYL KA +LK Y K
Sbjct: 135 NLTDSSKQPYLAKANKLKEKYRK 157
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 14/113 (12%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KPKR PT FF F+ +FR +Y E HP++KGV V K AGEKW++M+DEEK Y K E++
Sbjct: 26 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEKAKYGGKKQEVQ 85
Query: 168 ADYS-----------KAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGD 209
+ + +G+ + E DK+ ++VED E ED A +ED D
Sbjct: 86 ENKAAKKKESTSSKKAKTDGDEEEGEGSDKSKSDVEDDGE---EDGANEEDED 135
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P K+ RKKD N PKRPP+ FF+F D R + K HP S G+ VAK+ GE+W N+TD
Sbjct: 80 PGGKKGRKKDP--NAPKRPPSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLTD 136
Query: 154 EEKKPYLDKAAELKADYSK 172
K+PYL KA +LK Y K
Sbjct: 137 ATKQPYLIKANKLKDKYQK 155
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV-AKEAGEKWKNMTDEEKKPYLDKAA 164
S PK+PPTAFF F++DFRK+Y+E +P+ K + V K GEKWK MT EEK Y D A
Sbjct: 61 SKMPKKPPTAFFFFLEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMTYEEKVKYYDIAT 120
Query: 165 ELKADYSKAM 174
E + ++ +AM
Sbjct: 121 EKREEFHRAM 130
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 66 NLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRK 125
NLE V K +E ++ R +P + + + + PK+P TAFF F+DDFRK
Sbjct: 22 NLELAV--KSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDDFRK 79
Query: 126 EYKEAHPDSKGVTGV-AKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+Y+E +PD K + V K GEKWK MT EEK Y D A E + ++ +AM
Sbjct: 80 QYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAM 129
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS P KR +K D N PKRPP+ FF+F + R + K HP+ G+ VAK+ GE W
Sbjct: 76 TSYGPPGKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWN 134
Query: 150 NMTDEEKKPYLDKAAELKADYSK 172
N+TD K+PYL KA +LK Y K
Sbjct: 135 NLTDSNKQPYLAKANKLKEKYQK 157
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS P KR +K D N PKRPP+ FF+F + R + K HP+ G+ VAK+ GE W
Sbjct: 76 TSYGPPGKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWN 134
Query: 150 NMTDEEKKPYLDKAAELKADYSK 172
N+TD K+PYL KA +LK Y K
Sbjct: 135 NLTDSNKQPYLAKANKLKEKYQK 157
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS P KR +K D N PKRPP+ FF+F + R + K HP+ G+ VAK+ GE W
Sbjct: 76 TSYGPPGKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWN 134
Query: 150 NMTDEEKKPYLDKAAELKADYSK 172
N+TD K+PYL KA +LK Y K
Sbjct: 135 NLTDSNKQPYLAKANKLKEKYQK 157
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K SD +KPKRP + FFLFM DFR +++ +PD+K V+ V K AGEKW++M+D +K PY
Sbjct: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSD-DKAPY 62
Query: 160 LDKAAELKADYSKAMEG 176
+ A + K +Y KA+
Sbjct: 63 VADAEKKKMEYVKAIHA 79
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 44/70 (62%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D PK+PPTAFF FM+DFRK YK+ P K + + K GEKW M EEK Y D A
Sbjct: 21 DRRAPKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIGKACGEKWNTMAFEEKVKYYDIAT 80
Query: 165 ELKADYSKAM 174
E +A++ KAM
Sbjct: 81 EKRAEFEKAM 90
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 163 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 221
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 222 KLKEKYEK 229
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KPKR PT FF F+ +FR +Y E HP++KGV V K AGEKW++M+DEEK Y K A+
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEKAKYGGKKADAP 81
Query: 168 AD 169
A
Sbjct: 82 AS 83
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 160 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 218
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 219 KLKEKYEK 226
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 183
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 184 KLKEKYEK 191
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 183
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 184 KLKEKYEK 191
>gi|147866156|emb|CAN84129.1| hypothetical protein VITISV_041872 [Vitis vinifera]
Length = 217
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 39/204 (19%)
Query: 7 SNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMN 66
+N P RKRV A ++ RG DGSAF +C C +V +AL MH C L +K
Sbjct: 2 ANPPITRKRVHAIASG-----FRRGPDGSAFEKCHGCGVSVAIALADMHDCGLXRDVKRF 56
Query: 67 LEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKE 126
+ V+ RK+ EPR+ P R LFM++FRK
Sbjct: 57 KGQRGVQNL----------RKQTCLGEPRS------------PFR------LFMENFRKA 88
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKA-MEGNGDYNEVED 185
K +P V + E WK M+ EE+KPY+ +A ++ +++ K ++ D EV+D
Sbjct: 89 SKTGNP-----IHVDRIGFEAWKKMSMEERKPYIIQAEKVNSEHLKILLKEEHDRVEVDD 143
Query: 186 KADNEVEDKAENEVEDKAEKEDGD 209
+AD+ + K + + ED D
Sbjct: 144 EADSAMVGKFDKFYGFYEDSEDSD 167
>gi|359486485|ref|XP_003633450.1| PREDICTED: uncharacterized protein LOC100853686 [Vitis vinifera]
Length = 267
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 39/204 (19%)
Query: 7 SNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMN 66
+N P RKRV A ++ RG DGSAF +C C +V +AL MH C L +K
Sbjct: 2 ANPPITRKRVHAIASG-----FRRGPDGSAFEKCHGCGVSVAIALADMHDCGLKRDVKRF 56
Query: 67 LEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKE 126
+ V+ RK+ EPR+ P R LFM++FRK
Sbjct: 57 KGQRGVQNL----------RKQTCLGEPRS------------PFR------LFMENFRKA 88
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKA-MEGNGDYNEVED 185
K +P V + E WK M+ EE+KPY+ +A ++ +++ K ++ D EV+D
Sbjct: 89 SKTGNP-----IHVDRIGFEAWKKMSMEERKPYIIQAEKVNSEHLKILLKEEHDRVEVDD 143
Query: 186 KADNEVEDKAENEVEDKAEKEDGD 209
+AD+ + K + + ED D
Sbjct: 144 EADSAMVGKFDKFYGFYEDSEDSD 167
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG---VAKEAGEKWKNMTDEEKK 157
KK D N P+RP + FFLF +FR + K +P G+ G VAK+ GE WKN+ D EK+
Sbjct: 85 KKKKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGKTGIFGFGDVAKKLGEMWKNLNDSEKQ 144
Query: 158 PYLDKAAELKADYSK 172
P++ +AA+LK Y K
Sbjct: 145 PHITQAAKLKEKYEK 159
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 65 MNLEAQVVEKPAEINKKKP--AERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDD 122
M +Q KP + P + R KP EPR K D +PK+PPTAFF FM+D
Sbjct: 1 MKTRSQTGPKPLNTVRLPPVASPRTKP-RPEPRKK---GTVGDPRRPKKPPTAFFYFMED 56
Query: 123 FRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
FR ++K +P K + + + GEKW M EEK Y D A E +A++ KAM
Sbjct: 57 FRDKFKAENPSVKSMQDIGRACGEKWNKMAFEEKVKYYDLATERRAEFEKAM 108
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPP+ FFLF +FR + K A+P + V K+ GE W N++D EK+PY+
Sbjct: 99 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIEDVVKKLGEMWNNLSDSEKQPYM 157
Query: 161 DKAAELKADYSKAM---EGNGDYN 181
KAA+LK Y K + + NG ++
Sbjct: 158 TKAAKLKEKYEKDVADYKSNGQFD 181
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%)
Query: 92 TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
E +A RKK + KPKR T FF F+ +FR +Y E HP++KGV V K AGEKW+ M
Sbjct: 8 AEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAM 67
Query: 152 TDEEKKPYLDK 162
+DEEK Y K
Sbjct: 68 SDEEKAQYGGK 78
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 130 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYMTKAA 188
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 189 KLKEKYEK 196
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%)
Query: 92 TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
E +A RKK + KPKR T FF F+ +FR +Y E HP++KGV V K AGEKW+ M
Sbjct: 8 AEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAM 67
Query: 152 TDEEKKPYLDK 162
+DEEK Y K
Sbjct: 68 SDEEKAQYGGK 78
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
K+PT + +AK+ D NKPKRPP+AFF+F+++FRKEYK +P+ K V+ V K GE
Sbjct: 39 KRPTKKDLKAKK------DPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGE 92
Query: 147 KWKNMT 152
KWK+++
Sbjct: 93 KWKSLS 98
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P K+ RKKD N PKRP + FF+F D R + K HP S G+ VAK+ GE+W N+TD
Sbjct: 80 PGGKKGRKKDP--NAPKRPSSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLTD 136
Query: 154 EEKKPYLDKAAELKADYSK 172
K+PYL KA +LK Y K
Sbjct: 137 ATKQPYLIKANKLKDKYQK 155
>gi|224106836|ref|XP_002333621.1| predicted protein [Populus trichocarpa]
gi|222837865|gb|EEE76230.1| predicted protein [Populus trichocarpa]
Length = 171
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 74/161 (45%), Gaps = 58/161 (36%)
Query: 21 ASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINK 80
A+T++A+L+R +D S F +C+ L+
Sbjct: 52 ATTTAASLVRAKDDSGFVKCD---------LVC--------------------------- 75
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMD----------DFRKEYKEA 130
RK T TEP+AK+ +K +D N KRPP FFL M+ D RKEYKE
Sbjct: 76 -----RKTATLTEPKAKK-EEKGNDQNALKRPPITFFLLMNNALCCLFMWGDLRKEYKEG 129
Query: 131 HPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYS 171
+P SK V + + K EKKPY+DKAAELKA Y+
Sbjct: 130 NPHSKDVKKINETLQGK------VEKKPYMDKAAELKAGYA 164
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 40/49 (81%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
D NKPKRPP+AFF+F+++FRK YK+ HP+ K V+ V K GEKWK++++
Sbjct: 76 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSE 124
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYMTKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 10/94 (10%)
Query: 89 PTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
PT+TE +KK+ D N PK+P TAFFLF +R++ E +P+ K +T +++ AG KW
Sbjct: 38 PTTTE------KKKERDPNAPKKPLTAFFLFNQKYRQKVVERNPEIK-LTQISQMAGNKW 90
Query: 149 KNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
+M+++EKKPYLD+ K Y + ++ DYNE
Sbjct: 91 TSMSEQEKKPYLDQYNAAKEKYDQELK---DYNE 121
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K A+P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 165 ELKADYSK 172
+L Y K
Sbjct: 148 KLXEKYEK 155
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY++KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From High
Mobility Group Protein B3
Length = 81
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
S N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KA
Sbjct: 5 SSGNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYITKA 63
Query: 164 AELKADYSK 172
A+LK Y K
Sbjct: 64 AKLKEKYEK 72
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 167
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 168 KLKEKYEK 175
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P V VAK+ GE W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SVGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 104 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYITKAA 162
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 163 KLKEKYEK 170
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY
Sbjct: 2 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYN 60
Query: 161 DKAAELKADYSK 172
+KAA+LK Y K
Sbjct: 61 NKAAKLKEKYEK 72
>gi|255559641|ref|XP_002520840.1| DNA binding protein, putative [Ricinus communis]
gi|223539971|gb|EEF41549.1| DNA binding protein, putative [Ricinus communis]
Length = 209
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 43/196 (21%)
Query: 8 NAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNL 67
N P+ KRV A + RG DGSAF C++C V +AL MH C + K
Sbjct: 3 NPPRTGKRVHA---------IRRGHDGSAFETCDDCGFLVAIALADMHECEAETK----- 48
Query: 68 EAQVVEK-PAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKE 126
++V++ I K K K + S++P+ P F FM++FR+
Sbjct: 49 --RIVKRFKGVIGKHKIV-----------------KQNYSDQPRSP---FVTFMEEFRRT 86
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY-NEVED 185
K + + ++ E W+ M+ +E+KPY+ KA E+ + Y K++ D +EV+D
Sbjct: 87 CKNGK-----LIEIDRKGFETWRKMSKQERKPYVVKAEEVNSAYVKSLIKEIDVSSEVDD 141
Query: 186 KADNEVEDKAENEVED 201
+AD+ + K + ED
Sbjct: 142 EADSMMVGKFDPSYED 157
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 167
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 168 KLKEKYEK 175
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 40 DPNAPKRPPPGFFLFFSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYITKAA 98
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 99 KLKEKYEK 106
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 95 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 153
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 154 KLKEKYEK 161
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K L KK D N+PKRPP+A+FLF+ DFRK Y +K +T K+AGE W +++D EK
Sbjct: 255 KALEKKPRDPNRPKRPPSAYFLFLADFRKNYPGKSDPAKEIT---KKAGEAWNSLSDAEK 311
Query: 157 KPYLDKAAELKADYSKAME 175
PY A ++A + + +E
Sbjct: 312 TPYYRSAQLVRAKWEQDLE 330
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAH---PDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
KRP TA+ F+ +R+ KEA P +K +T + EKW+NM +EEK+P+L+
Sbjct: 191 KRPTTAYLYFVSKYRETLKEAGEVVPKAKIIT---QACAEKWRNMNEEEKEPFLE 242
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 47/63 (74%)
Query: 113 PTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
P+ FF+F+DDFR+E+ A+PD+K V V K AG+KWK+MT+E+K P++ KA K +Y+
Sbjct: 38 PSPFFVFLDDFRREFNLANPDNKSVASVGKAAGKKWKSMTEEDKAPFVAKAKSKKTEYAA 97
Query: 173 AME 175
M+
Sbjct: 98 TMQ 100
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKLKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K L KK D N+PKRPP+A+FLF+ DFRK Y +K +T K+AGE W +++D EK
Sbjct: 118 KALEKKPRDPNRPKRPPSAYFLFLADFRKNYPGKSDPAKEIT---KKAGEAWNSLSDAEK 174
Query: 157 KPYLDKAAELKADYSKAME 175
PY A ++A + + +E
Sbjct: 175 TPYYRSAQLVRAKWEQDLE 193
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAH---PDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
KRP TA+ F+ +R+ KEA P +K +T + EKW+NM +EEK+P+L+
Sbjct: 54 KRPTTAYLYFVSKYRETLKEAGEVVPKAKIIT---QACAEKWRNMNEEEKEPFLE 105
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%)
Query: 113 PTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
PTAFF F++DFRKE++E +PD K + V K GEKWK MT EEK Y D A E +A++ +
Sbjct: 81 PTAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 140
Query: 173 A 173
A
Sbjct: 141 A 141
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ KAA
Sbjct: 77 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYITKAA 135
Query: 165 ELKADYSKAMEGNGDYNEVED 185
+LK + S + +V D
Sbjct: 136 KLKENCSSLGTCPCFFQDVAD 156
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 104 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 162
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 163 KLKEKYEK 170
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K++ D N PKRPP+ FFLF +FR + K +P + +AK+ GE W N++D EK+PY
Sbjct: 85 KRNKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDIAKKLGEMWNNLSDGEKQPYN 143
Query: 161 DKAAELKADYSK 172
+KAA+LK Y K
Sbjct: 144 NKAAKLKEKYEK 155
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 39/54 (72%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
RKK S KPKRPP+AFF+FM +FR+EY+ HP +K + V+K AGEKW +D
Sbjct: 145 RKKVIMSGKPKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVVSKTAGEKWHAKSD 198
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 141 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAA 199
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 200 KLKEKYEK 207
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
DSN PK PP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DSNAPKHPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYNNKAA 147
Query: 165 ELKADYSKAMEGN 177
+LK Y K + N
Sbjct: 148 KLKEKYEKDVADN 160
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 74/157 (47%), Gaps = 22/157 (14%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N +VPV CS K E E A+++K + +R+ T P+ KK
Sbjct: 38 NPDVPVNFSDFSKRCSERWKTMSGKEKSKFEDLAKVDKVR-YDREMKTYIPPKGS---KK 93
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKKPYL 160
D N PKRPP+ FFLF D R + K P G+T VAK+ GE W TDEEKKPY
Sbjct: 94 KKDPNAPKRPPSGFFLFCSDHRPKIKAGSP---GLTIGDVAKKLGELWNGCTDEEKKPYN 150
Query: 161 DKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
KAA+LK Y K D AD E K E+
Sbjct: 151 AKAAKLKEKYEK------------DVADYRTEGKVES 175
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 44 NKNVPVALISMHS-CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKK 102
N +VPV CS K E E A+++K + +R+ T P+ KK
Sbjct: 31 NPDVPVNFSDFSKRCSERWKTMSGKEKSKFEDLAKVDKVR-YDREMKTYIPPKGS---KK 86
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKKPYL 160
D N PKRPP+ FFLF D R + K P G+T VAK+ GE W TDEEKKPY
Sbjct: 87 KKDPNAPKRPPSGFFLFCSDHRPKIKAGSP---GLTIGDVAKKLGELWNGCTDEEKKPYN 143
Query: 161 DKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 AKAAKLKEKYEK 155
>gi|355691926|gb|EHH27111.1| hypothetical protein EGK_17228 [Macaca mulatta]
Length = 196
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
DSN PKRPP+ FFLF +F + K +P + + K+ GE WKN+ D EK+PY+ KAA
Sbjct: 76 DSNAPKRPPSGFFLFSSEFCPKMKSTNPGI-SIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 135 KLKEKYEK 142
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P TA+ L++++ R E KE PD K VT VAK+AGE WK M +E+KKPY DKA
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDMK-VTEVAKKAGENWKAMGEEDKKPYQDKAD 154
Query: 165 ELKADYSKAM 174
+ K + M
Sbjct: 155 KAKETWKTEM 164
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 86 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYNNKAA 144
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 145 KLKEKYEK 152
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R K D N PKRPP+ FFLF + R + K +P S G+ VAK+ GE W +TD K+P+
Sbjct: 83 RGKKKDPNAPKRPPSGFFLFCSEHRPQIKAQYP-SLGIGDVAKKLGEMWNGLTDANKQPF 141
Query: 160 LDKAAELKADYSK 172
L KA +LK Y K
Sbjct: 142 LMKANKLKDKYQK 154
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 93 EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
+P R K D NKPKR P+AFF+FM++FRKE+KE +P +K V V K AG++WK+++
Sbjct: 25 KPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 84
Query: 153 D 153
+
Sbjct: 85 E 85
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica KU27]
Length = 111
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N+PKRPPT +FL++++ R KE HPD+K VT +AK A E+WK + +EEKK Y KA
Sbjct: 24 NRPKRPPTPYFLYLNEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQTKADAA 82
Query: 167 KADYSKAME 175
K Y K +E
Sbjct: 83 KEQYKKDIE 91
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 91 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 147 KLKEKYEK 154
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|413938186|gb|AFW72737.1| hypothetical protein ZEAMMB73_544458 [Zea mays]
Length = 96
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 17/112 (15%)
Query: 120 MDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179
M +FR+EY+ HP +K V V+K AGEKW+ M+D+EK+PY+D+A + K DY K
Sbjct: 1 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKT------ 54
Query: 180 YNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQDEENLDD 231
KA+ DK E+ KA+ E DE GS+ +V +++ DEEN DD
Sbjct: 55 ------KANF---DKKESTSSKKAKTE--DEDGSKSEVDDEDGSSDEENDDD 95
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + V K+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVPKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|224127196|ref|XP_002320011.1| hypothetical protein POPTRDRAFT_571997 [Populus trichocarpa]
gi|222860784|gb|EEE98326.1| hypothetical protein POPTRDRAFT_571997 [Populus trichocarpa]
Length = 249
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 19/88 (21%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV-------- 137
RK T TEP+AK+ +K +D N KRPP FFL M D RKEYKE + SK V
Sbjct: 7 RKTATLTEPKAKK-EEKGNDQNALKRPPITFFLLMGDLRKEYKEGNLHSKEVKKINEMKE 65
Query: 138 ----------TGVAKEAGEKWKNMTDEE 155
VA++ GE+WK+MTDE+
Sbjct: 66 YRNANTAFDEIQVARKGGERWKSMTDED 93
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K +P G+T VAK+ GE W N++D EK+PY +K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP---GITIGDVAKKLGEMWNNLSDSEKQPYNNK 145
Query: 163 AAELKADYSK 172
A+LK Y K
Sbjct: 146 GAKLKEKYEK 155
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF +FR + K HP S + +AK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGS-TIGDIAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K PY KAA+LK Y K
Sbjct: 130 GEMWNNTATDDKLPYERKAAKLKEKYEK 157
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 163 AAELKADYSKAM 174
A K Y + M
Sbjct: 64 AKADKVRYEREM 75
>gi|355766483|gb|EHH62519.1| hypothetical protein EGM_20887 [Macaca fascicularis]
Length = 198
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
DSN PKRPP+ FFLF F + K +P + + K+ GE WKN+ D EK+PY+ KAA
Sbjct: 76 DSNAPKRPPSGFFLFSSKFCPKMKSTNPGI-SIGDMVKKLGEMWKNLNDSEKQPYITKAA 134
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 135 KLKDKYEK 142
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRPP+ FFLF +FR + K P G+T VAK+ GE W N++D EK+PY+ K
Sbjct: 108 DPNAPKRPPSGFFLFCSEFRPKIKSTKP---GITIGDVAKKLGEMWNNLSDSEKQPYITK 164
Query: 163 AAELKADYSK 172
A+LK + K
Sbjct: 165 VAKLKEKHEK 174
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY +KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDGEKQPYNNKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFFLF DFR + K HP S + +AK+ GE W N ++K PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHPGS-TIGDIAKKLGEMWNNTATDDKLPY 143
Query: 160 LDKAAELKADYSK 172
+AA+LK Y K
Sbjct: 144 ERRAAKLKEKYEK 156
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFFLF DFR + K HP S + +AK+ GE W N ++K PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHPGS-TIGDIAKKLGEMWNNTATDDKLPY 143
Query: 160 LDKAAELKADYSK 172
+AA+LK Y K
Sbjct: 144 ERRAAKLKEKYEK 156
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKRPP+ FFLF +F + K +P + VAK+ GE WKN+ D EK+PY+
Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIP-IGDVAKKLGEMWKNLNDSEKQPYIT 143
Query: 162 KAAELKADYSK 172
+AA+LK Y K
Sbjct: 144 QAAKLKEKYEK 154
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N KRPP+ FFLF +F + K +P + VAK+ GE W N+ D EK+PY+
Sbjct: 85 KKKKDPNATKRPPSGFFLFCSEFHPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYI 143
Query: 161 DKAAELKADYSK---AMEGNGDYNEVEDKA 187
KAA+LK Y K A + G ++ V+ A
Sbjct: 144 TKAAKLKEKYEKDVAASKSKGKFDGVKGPA 173
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYERKAAKLKGKYEK 157
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDRKKPRGKMSSYAFFVQTCREEHKKRHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP + FFLF +FR + K +P + VAK+ G+ W N++D EK+PY+ KAA
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNPGIS-IGDVAKKLGDMWNNLSDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N KRPP+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPNASKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKRPP+ FFLF + R + K +P V VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 66 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI-SVGDVAKKLGEMWNNLNDSEKQPYITKAA 124
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 125 KLKEKYEK 132
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF +FR + K HP S + +AK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGS-TIGDIAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K P+ KAA+LK Y K
Sbjct: 130 GEMWNNTATDDKLPFERKAAKLKEKYEK 157
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 163 AAELKADYSKAM 174
A K Y + M
Sbjct: 64 AKADKVRYEREM 75
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T+ P+ + KK D N PKRPP AFFLF ++ + KE HPD + VAK+
Sbjct: 72 EREMKTNIPPKGE-TEKKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHPDL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY +KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPY-EKAAKLKEKYEK 156
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N+ + EK+PY +KAA
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNEGEKQPYNNKAA 122
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 123 KLKEKYEK 130
>gi|413923415|gb|AFW63347.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 95
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 120 MDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
M +FR+EY+ HP +K V V+K AGEKW++M+++EK+PY+D+A + K DY K
Sbjct: 1 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEK 53
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP +++ LF +RK +P K VT VAK GEKW M D EK PY++KAA
Sbjct: 116 DENAPKRPLSSYMLFSQTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDAEKAPYVNKAA 174
Query: 165 ELKADYS 171
ELKA Y+
Sbjct: 175 ELKAAYN 181
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKE--AHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
K D N PKRP T FFLF D+ R++ K + K + V+K GE+W +TD EK Y
Sbjct: 8 KKKDPNAPKRPKTGFFLFCDERREKVKATLGEGEKKSASEVSKLLGEEWGKLTDSEKDKY 67
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
KR RK+ D N PKRPP+AFF+F ++R K+ +P + AK+ GE W +T E
Sbjct: 85 GKRGRKR-KDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKLTQSE 142
Query: 156 KKPYLDKAAELKADYSK---AMEGNGDY 180
K+PY +KA +L+ Y + A G G Y
Sbjct: 143 KQPYEEKAQKLREKYDRDMVAYRGGGSY 170
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +A+ F+ R+E+++ +P+ S +K+ E+WK ++ +KK + D A
Sbjct: 5 DVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKGLSASDKKCFEDMA 64
Query: 164 AELKADYSKAM 174
K Y++ M
Sbjct: 65 KADKVRYNREM 75
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYVPPKGES-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N + E+K+P+ KA +LK Y K
Sbjct: 130 GEMWNNTSSEDKQPFEKKAGKLKEKYEK 157
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A K Y + M
Sbjct: 64 ARADKVRYEREM 75
>gi|145541886|ref|XP_001456631.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424443|emb|CAK89234.1| unnamed protein product [Paramecium tetraurelia]
Length = 235
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK+ D N PK+P T FFLF +R++ + +P+ K +T +++ AG KW +M+++EKKPY
Sbjct: 42 KKKERDPNAPKKPLTPFFLFNQKYREKVVDRNPEIK-LTQISQMAGNKWSSMSEQEKKPY 100
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEG 211
+D+ K Y + ++ DYNE N+ + K +V+DK+ K D
Sbjct: 101 VDQYNAAKEKYEQELK---DYNEKNGIETNDKKRKKSEKVDDKSMKSALDHN 149
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 15/95 (15%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPKRPP+AFF+F+++FRK YK+ HP+ K V+ +K PY KAA
Sbjct: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA---------------DKAPYEAKAA 96
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEV 199
+ K+DY K M E D E D++++EV
Sbjct: 97 KRKSDYEKLMAAYNKKQESMADDDEEESDRSKSEV 131
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKRPP+ FFLF + R + K +P V VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 89 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI-SVGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T+ P+ + KK D N PKRPP AFFLF ++ + KE HPD + VAK
Sbjct: 72 EREMKTNIPPKGET-EKKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHPDL-SIGDVAKIL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY +KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPY-EKAAKLKEKYEK 156
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAILKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFQDM 63
Query: 163 AAELKADYSKAM 174
A K Y + M
Sbjct: 64 AKADKVHYEREM 75
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N+PKRP T +FL++ + R KE HPD+K VT +AK A E+WK + +EEKK Y KA
Sbjct: 24 NRPKRPQTPYFLYLHEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQAKADAA 82
Query: 167 KADYSKAME 175
K Y K ME
Sbjct: 83 KEQYKKDME 91
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 144 EKKAARLKEKYEK 156
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PK PP+ FFLF +FR + K +P + VAK+ GE W +++D EK+PY+
Sbjct: 252 KKKDPNAPKTPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNSLSDSEKQPYIT 310
Query: 162 KAAELK 167
KAA+LK
Sbjct: 311 KAAQLK 316
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
K+ RK+ D N P+RPP+ FFLF + R K +P S G+ VAK+ G W N++D E
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSE 139
Query: 156 KKPYLDKAAELKADYSKAM 174
K+P+L A +LK Y K M
Sbjct: 140 KQPFLSNADKLKDKYQKDM 158
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N +K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAVYDKQPYGKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|51858856|gb|AAH81424.1| Hmgb3b protein [Danio rerio]
Length = 166
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
K+ RK+ D N P+RPP+ FFLF + R K +P S G+ VAK+ G W N++D E
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSE 139
Query: 156 KKPYLDKAAELKADYSKAM 174
K+P+L A +LK Y K M
Sbjct: 140 KQPFLSNADKLKDKYQKDM 158
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKK 157
+K+ D N PKRPP+AFFLF DFR + K HP G+T AK+ GE W + + E K+
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHP---GLTIGDTAKKLGEMWNSSSAENKQ 141
Query: 158 PYLDKAAELKADYSK 172
PY KAA+LK Y K
Sbjct: 142 PYERKAAKLKEKYDK 156
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKK 157
+K+ D N PKRPP+AFFLF DFR + K HP G+T AK+ GE W + + E K+
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHP---GLTIGDTAKKLGEMWNSSSAENKQ 141
Query: 158 PYLDKAAELKADYSK 172
PY KAA+LK Y K
Sbjct: 142 PYERKAAKLKEKYDK 156
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R RKK D N PK+P +A+F+F + R + +P+ + V+ AK GE+W+ MT+E+K+
Sbjct: 127 RRRKKKKDPNAPKKPKSAYFVFAETRRDALRAQYPEDR-VSDTAKRTGEEWRGMTEEQKR 185
Query: 158 PYLDKAAELKADYSKAM 174
P+ KA ELK +Y +A+
Sbjct: 186 PFQLKAQELKQEYDQAV 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKP+ T + F + R + HP++ VT VAK G +W+ +TDE+KKPY D A
Sbjct: 45 DPNKPRGALTPYMCFNKEVRPAIMQQHPNA-SVTEVAKLIGAQWRQLTDEQKKPYNDMAR 103
Query: 165 ELKADYSKAM 174
+ Y +AM
Sbjct: 104 TDRERYKEAM 113
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFF+F +FR + K HP + VAK+ GE W N E+K+PY KA+
Sbjct: 95 DPNAPKRPPSAFFIFCSEFRPKVKGEHPGLT-IGEVAKKLGELWNNTNSEDKQPYEKKAS 153
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 154 KLKEKYEK 161
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
++ KP+ +++ F+ R+E+K+ HPD S + +++ E+WK M+ +EK + D A
Sbjct: 8 EAGKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSRKCSERWKTMSVKEKGKFEDLA 67
Query: 164 AELKADYSKAM 174
+ K Y + M
Sbjct: 68 KQDKVRYDREM 78
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F +FR + KE P + VAK+ GE W + EEK+PY
Sbjct: 74 KKRFKDPNAPKRPPSAFFIFCAEFRPKVKEETPGL-SIGDVAKKLGEMWNKTSSEEKQPY 132
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 133 EKKAARLKEKYEK 145
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K +P + VAK+ GE W N++D +K+ Y+ KAA
Sbjct: 89 DPNAPKRPPSRFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSDKQQYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY AA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKXAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +FR + K + + VAK+ GE W N+ D +K+PY+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNLGI-SIGDVAKKLGEMWNNLNDSKKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYEK 155
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKRPP+ FFLF +F + K +P + VAK+ E WKN+ D EK+PY+
Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIP-IGDVAKKLSEMWKNLNDSEKQPYIT 143
Query: 162 KAAELKADYSK 172
+AA+LK Y K
Sbjct: 144 QAAKLKEKYEK 154
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KA++LK Y K
Sbjct: 144 EKKASKLKEKYEK 156
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
KR RK+ D N PKRPP+AFF+F ++R K+ +P + AK+ GE W ++ E
Sbjct: 85 GKRGRKRK-DPNAPKRPPSAFFVFCSEYRPSVKQQYPGL-SIGDCAKKLGEMWSKLSQSE 142
Query: 156 KKPYLDKAAELKADYSK---AMEGNGDY 180
K+PY +KA +L+ Y + A G G Y
Sbjct: 143 KQPYEEKAQKLREKYDRDMVAYRGGGTY 170
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +A+ F+ R+E+++ +P+ S +K+ E+WK ++ +KK + D A
Sbjct: 5 DVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDMA 64
Query: 164 AELKADYSKAM 174
K Y++ M
Sbjct: 65 KADKVRYNREM 75
>gi|16033552|gb|AAL13284.1|AF416953_1 high mobility group protein [Naegleria fowleri]
Length = 209
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKRP +++ LF D RKE E P K VT VAK+ G W+ M+DEEKKPY DKAA+LK
Sbjct: 118 PKRPLSSYMLFSQDKRKELLEKDPTLK-VTEVAKQVGALWQKMSDEEKKPYNDKAAKLKK 176
Query: 169 DY 170
+Y
Sbjct: 177 EY 178
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
DSN PK+P TA+FLF D+ R+E K+ + K + V+K GE W +T+E+KKPY D+
Sbjct: 13 DSNAPKKPKTAYFLFCDEHREEAKKKAGEGKSASEVSKILGEMWGKLTEEQKKPYNDR 70
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P +KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N
Sbjct: 80 PHKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWTNTAA 138
Query: 154 EEKKPYLDKAAELKADYSK 172
++K+PY AA+LK Y K
Sbjct: 139 DDKQPYGKMAAKLKEKYEK 157
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KA++LK Y K
Sbjct: 144 EKKASKLKEKYEK 156
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 114
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N+PKRPPT +F+++++ R KE HPD + T ++K A E+WK + +EEKK Y KA
Sbjct: 27 NRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWKALGEEEKKEYQTKADAA 85
Query: 167 KADYSKAME 175
K Y K ME
Sbjct: 86 KEQYKKDME 94
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F DFR + K HP + AK+ G W + EEKKPY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPY 143
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 144 EKKAATLKEKYDK 156
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F DFR + K HP + AK+ G W + EEKKPY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPY 143
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 144 EKKAATLKEKYDK 156
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F DFR + K HP + AK+ G W + EEKKPY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPY 143
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 144 EKKAATLKEKYDK 156
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F DFR + K HP + AK+ G W + EEKKPY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPY 143
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 144 EKKAATLKEKYDK 156
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
KR RK+ D N PKRPP+AFF+F ++R K+ +P + AK+ GE W ++ E
Sbjct: 85 GKRGRKRK-DPNAPKRPPSAFFVFCSEYRPSVKQQYPGL-SIGDCAKKLGEMWSKLSQSE 142
Query: 156 KKPYLDKAAELKADYSK---AMEGNGDY 180
K+PY +KA +L+ Y + A G G Y
Sbjct: 143 KQPYEEKAQKLREKYDRDMVAYRGGGTY 170
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +A+ F+ R+E+++ +P+ S +K+ E+WK ++ +KK + D A
Sbjct: 5 DINKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPSDKKCFEDMA 64
Query: 164 AELKADYSKAME 175
K Y++ M+
Sbjct: 65 KADKVRYNREMK 76
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KA+ LK Y K
Sbjct: 144 EKKASRLKEKYEK 156
>gi|344237192|gb|EGV93295.1| High mobility group protein B1 [Cricetulus griseus]
Length = 203
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++ + K HP + VAK+
Sbjct: 60 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKL 117
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
GE W N E+K+PY KAA+LK + K +
Sbjct: 118 GELWNNTAAEDKQPYGKKAAKLKEKHEKGI 147
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK+ + D A KA Y +
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDMAKADKARYER 61
Query: 173 AM 174
M
Sbjct: 62 EM 63
>gi|394337181|gb|AFN27605.1| high mobility group protein 1 [Azumapecten farreri]
Length = 215
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPKRP TA+FLF+ DFRK+ K ++ G + K+AG +W+ +TD++KKPY D++
Sbjct: 96 DPTKPKRPQTAYFLFLGDFRKKMKNSNI---GHKDIIKQAGAEWRQLTDQDKKPYEDQSQ 152
Query: 165 ELKADY 170
L+ Y
Sbjct: 153 ILQKKY 158
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 88 KPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEK 147
+P++ P ++ +K D+N+PKR +A+F F+ R E K + + KEA +
Sbjct: 3 RPSADSPTKRK--RKPKDANRPKRATSAYFFFLAHCRAEAKTTGRNVSKIADFTKEASAQ 60
Query: 148 WKNMTDEEKKPYLDKAAELKADYSKAM 174
W++MT +KK + D+AA+ KA Y M
Sbjct: 61 WRSMTSSDKKQFDDRAAKDKARYDAEM 87
>gi|358255365|dbj|GAA57072.1| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 778
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 80 KKKPAERKKPTSTEPRAK--RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV 137
K K RK+ S EP A + RK+ D N PK+ +AFFLF +D R + K HPD K V
Sbjct: 605 KDKERYRKEMQSYEPPADEGKSRKRKKDPNAPKKALSAFFLFCNDERPKVKADHPDWK-V 663
Query: 138 TGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
+ +AKE G++W+ T + K Y +A K Y KA+ G
Sbjct: 664 SEIAKELGKRWE--TCKNKSKYESQAQVEKQRYEKALPG 700
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +KPK T + LF+ + K+ HP + +KE E+WKN+T +EKK + D A
Sbjct: 544 DKSKPKGALTPYALFLQSMHADQKKKHPSVTLDFKTFSKECSEQWKNLTAKEKKKFEDLA 603
Query: 164 AELKADYSKAME 175
A+ K Y K M+
Sbjct: 604 AKDKERYRKEMQ 615
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 92 TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
T R K K+ D+ K K+P + FF F++DFRKE++ +PD K + K + +KWK M
Sbjct: 50 TNSRKKLKAKQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKSKRDIGKASAKKWKTM 109
Query: 152 TDEEKKPYLDKAAELKADYSKAM 174
T EEK Y D A + ++ AM
Sbjct: 110 TYEEKAQYFDIATKKHDEFDSAM 132
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKR P+ FFLF +FR + K +P + VAK+ G+ W N++D EK+PY+
Sbjct: 88 KGKDPNAPKRRPSVFFLFCSEFRLKIKSTNPGI-SIGDVAKKLGDVWNNLSDSEKQPYIT 146
Query: 162 KAAELK 167
KAA+LK
Sbjct: 147 KAAKLK 152
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F +FR + KE P + VAK+ GE W + EEK+P+
Sbjct: 74 KKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKKLGEMWNKTSAEEKQPF 132
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 133 EKKAARLKEKYEK 145
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
KK D NKPKRPP+AFF+FM +FR+ +K+ +P +K V V K G++WK ++D
Sbjct: 28 KKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSD 80
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P+ ++ K+ D N PKRPP+AFF+F D R K HP + +AK+ GE W T
Sbjct: 81 PKGTKVGKRKKDPNAPKRPPSAFFVFCSDHRARIKGEHPGIS-IGDIAKKLGELWSKQTP 139
Query: 154 EEKKPYLDKAAELKADYSK 172
++K PY KA +LK Y K
Sbjct: 140 KDKVPYEAKAGKLKEKYEK 158
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HP S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFEDLA 64
Query: 164 AELKADYSKAMEG 176
K + + M+G
Sbjct: 65 KGDKVRFDREMKG 77
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPKRP +A+FL++++ R+E K +PD+ GVT +AK AG++WK +TD+ + L A
Sbjct: 545 GDPNKPKRPQSAYFLWLNEMREEIKAENPDA-GVTDIAKLAGQRWKEVTDKTRWEGL--A 601
Query: 164 AELKADYSKAME 175
+ K Y KAME
Sbjct: 602 VKAKESYEKAME 613
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 57 CSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAF 116
CS K E E A+++K + ERK T P+ + +KK D N PKR P+ F
Sbjct: 45 CSERWKTMSAKEKGTFEDMAKVDKAR-YERKMKTYIPPK-EETKKKFKDPNAPKRAPSTF 102
Query: 117 FLFMDDFRKEYKEAHPDSKGV-TG-VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FLF ++R + K HP G+ TG VAK+ GE W N +K+PY KAAELK Y K
Sbjct: 103 FLFCSEYRPKIKGEHP---GLSTGDVAKKLGEMWNNTAAGDKQPYEKKAAELKEKYEK 157
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTE--PRAKRLRKKDSDSNKPKRPPTAFFLFMDD 122
M +Q KP + P +P+ST+ PR K K D PK+PPTAFF FM+D
Sbjct: 1 MKTRSQTSPKPLKTVAMAP----RPSSTKRKPRPKPAGK--GDPRAPKKPPTAFFYFMED 54
Query: 123 FRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
FRK YK+ P K + + K GEKW MT E
Sbjct: 55 FRKIYKQEKPSVKSMQEIGKACGEKWNTMTFE 86
>gi|297810645|ref|XP_002873206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319043|gb|EFH49465.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 188
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 40/222 (18%)
Query: 10 PKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEA 69
P+ RKRV A + R DGSAF +CEEC + + L MH C
Sbjct: 5 PRTRKRVQA---------VRRAADGSAFKKCEECGVMIAIGLFDMHECG----------- 44
Query: 70 QVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKE 129
K++ +R K ++ + S ++P+ P F F++DFR++Y
Sbjct: 45 ---------EKRREVKRFKYIASGNVINISKPIGSFEDEPRSP---FVFFLEDFREKY-- 90
Query: 130 AHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM-EGNGDYNEVEDKAD 188
+ + ++ WKNM E++KP+ +A E+ +S+ + E ++ +D+AD
Sbjct: 91 ----NGNLVDASRICFNVWKNMLPEDQKPFNARAMEVDLAHSRKLNEEAKSIDKADDEAD 146
Query: 189 NEVEDKAENEVEDKAEKEDGDEGGSEKDVAEKEVQQDEENLD 230
++ + + E E+ +E D E E +D+ LD
Sbjct: 147 SKTVGRYDKFYESYVHYEE-EEDYDSSDHFENEFWEDDTLLD 187
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY-----LDKAA 164
KR T FF F+ +FR +Y E HP+ KGV V+K AGEKW++M+DEEK Y D A
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 165 ELKADYS----KAMEGNGDYNEVEDKADNEVEDKAENEVED 201
K + S KA GD E +K+ +EVED ++ ED
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEVEDDEQDGNED 120
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY-----LDKAA 164
KR T FF F+ +FR +Y E HP+ KGV V+K AGEKW++M+DEEK Y D A
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 165 ELKADYS----KAMEGNGDYNEVEDKADNEVEDKAENEVED 201
K + S KA GD E +K+ +EVED ++ ED
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEVEDDEQDGNED 120
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY-----LDKAA 164
KR T FF F+ +FR +Y E HP+ KGV V+K AGEKW++M+DEEK Y D A
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKA 79
Query: 165 ELKADYS----KAMEGNGDYNEVEDKADNEVEDKAENEVED 201
K + S KA GD E +K+ +EVED ++ ED
Sbjct: 80 SKKENTSSKKAKADIREGDEAEGSNKSKSEVEDDEQDGNED 120
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 75 PAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
PA + PA+RKK D N PKRPP+AFF+F DFR + K +P
Sbjct: 80 PARGGRGGPAQRKK---------------KDPNAPKRPPSAFFIFCADFRPQIKADNPGM 124
Query: 135 KGVTG-VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
V G +AK GE W T+E K PY KA LK Y K
Sbjct: 125 --VIGTIAKRLGEMWGRQTNENKAPYEHKANILKEKYKK 161
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHP-DSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D +KP+ +++ F+ R+E+K+ HP DS T +++ E+WK ++ +EK + D
Sbjct: 4 GDPSKPRGRMSSYAYFVQTCREEHKKKHPNDSVAFTDFSRKCSERWKGLSPKEKLRFEDL 63
Query: 163 A--------AELKADYSKAMEGNG 178
A E+K DY+ A G G
Sbjct: 64 ARADKTRYDTEMK-DYAPARGGRG 86
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K++D N PKRP + FFLF +F + K +P + VAK+ GE WKN+ D EK+PY+
Sbjct: 23 KNNDPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWKNLNDSEKQPYVT 81
Query: 162 KAAEL 166
K A+L
Sbjct: 82 KVAKL 86
>gi|30688969|ref|NP_851063.1| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
gi|75249518|sp|Q941D1.1|HMG12_ARATH RecName: Full=High mobility group B protein 12; AltName:
Full=Nucleosome/chromatin assembly factor group D 12
gi|15529240|gb|AAK97714.1| unknown protein [Arabidopsis thaliana]
gi|56381971|gb|AAV85704.1| At5g23405 [Arabidopsis thaliana]
gi|332005778|gb|AED93161.1| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
Length = 149
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 33 DGSAFARCEE--CNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPT 90
D S FARCE+ CNK +PV L+ MH C + + A R T
Sbjct: 8 DSSIFARCEDVDCNKKIPVELVRMHICY------------------AMFHRTLAARGFGT 49
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
T+ + K ++ K T F +FM+ FRK ++ + + G +K E WK+
Sbjct: 50 QTQAKKKP-----TNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEG-SKIGWEMWKS 103
Query: 151 MTDEEKKPYLDKAA 164
MT++EKK YLDKAA
Sbjct: 104 MTEDEKKDYLDKAA 117
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 57/91 (62%), Gaps = 11/91 (12%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD--------SKGVTGVAKEAGEKWKNM 151
+KK+ D N PKRP TAFFLF +R++ E +P + +++ AG+KW++M
Sbjct: 24 KKKERDPNAPKRPLTAFFLFSQKYREKVLERNPGIDLSDYQLEVKLIQISQMAGQKWQSM 83
Query: 152 TDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
+++EK+PY+D+ + K+ Y+ ++ +YNE
Sbjct: 84 SEQEKQPYVDQYNQAKSKYNDDVK---EYNE 111
>gi|444716453|gb|ELW57303.1| High mobility group protein B1 [Tupaia chinensis]
Length = 213
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + KK D N PKRPP+AFFLF ++R + +E HP + VAK+
Sbjct: 60 EREMKTYIPPKGET--KKFKDPNAPKRPPSAFFLFCSEYRPKIRE-HPGL-SIGDVAKKL 115
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK---AMEGNGDYNEVEDKA 187
E W N+ + K+ Y KAA+LK Y K A +G G N E A
Sbjct: 116 EEMWNNIAADGKQSYEKKAAKLKGKYRKDITAFQGKGTANAAEKGA 161
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY-----LDKAA 164
KR T FF F+ +FR +Y E HP+ KGV V+K AGEKW++M+DEEK Y D A
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKA 79
Query: 165 ELKADYS----KAMEGNGDYNEVEDKADNEVED 193
K + S KA GD E +K+ +EVED
Sbjct: 80 SKKENTSSKKAKADVREGDEAEGSNKSKSEVED 112
>gi|346468357|gb|AEO34023.1| hypothetical protein [Amblyomma maculatum]
Length = 734
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
R R +KK+ D+NKPKRPP+A+FL++ + R + K+ +P S +T V K AGE WK +TD+
Sbjct: 547 RKPRRQKKERDANKPKRPPSAYFLWLAENRDKIKKDNP-SFSITDVTKRAGELWKEVTDK 605
Query: 155 EKKPYLDKAAELKADYSKAM 174
K + +A E A Y +AM
Sbjct: 606 SK--WEQQAVEAAAKYKEAM 623
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG--VAKEAGEKWKNMTDEEKKPY 159
K D NKPKRPPTA+FLF+ D+R +KG+ + K AGE+W+++++E+KKPY
Sbjct: 93 KSVDPNKPKRPPTAYFLFLADYR-----IRMANKGIEHKELLKMAGEEWRSLSNEDKKPY 147
Query: 160 LDKAAELKADYSKAM 174
KA E Y AM
Sbjct: 148 EKKALEESKKYESAM 162
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D NKPKR +A+F F+ RKE +A + KEA EKWK ++ ++KKP+
Sbjct: 13 KKKVKDVNKPKRATSAYFFFLAQCRKEAAKAGKAPTKIAEFTKEASEKWKALSADKKKPF 72
Query: 160 LDKAAELKADYSKAM 174
AA+ K Y M
Sbjct: 73 EAAAADDKRRYETEM 87
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK N KRPP+AFFLF ++R + K HP + GVAK+
Sbjct: 10 EREMKTYIPPKGE-TKKKFKGPNAAKRPPSAFFLFCSEYRPKIKGEHPGL-SIGGVAKKL 67
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY K A+LK Y K
Sbjct: 68 GEVWNNTAADDKQPYEKKPAKLKEKYEK 95
>gi|118344358|ref|NP_001072002.1| transcription factor protein [Ciona intestinalis]
gi|70570502|dbj|BAE06613.1| transcription factor protein [Ciona intestinalis]
Length = 263
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG--VTGVAKEAGEKWKNMTDEEKKPYLD 161
S N+PKRP T+FFLF+ + RK+ P G V V K A E+WK M + EK+PY+D
Sbjct: 28 SIQNRPKRPLTSFFLFLGEKRKQ-----PQYAGLRVYEVTKVAAEEWKQMDENEKQPYVD 82
Query: 162 KAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKE 206
E+KA +S E +Y + +D E+ D + + + EKE
Sbjct: 83 ---EMKASFSTFHERYQEY--LNQLSDLEIHDLKIDRMTKREEKE 122
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FFLF +F E K +P + VAK+ GE W N++D +K+ Y++K A
Sbjct: 86 DPNAPKRPPSGFFLFFSEFCSEIKSTNPGI-SIGDVAKKLGEMWNNLSDSKKQLYVNKDA 144
Query: 165 ELK------ADYSKAMEGN 177
+LK ADY +G
Sbjct: 145 KLKKYEKDVADYKGEFDGT 163
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R E K HP + AK+ GE W + ++K+PY KAA
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 173
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 174 KLKEKYEK 181
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + + A
Sbjct: 29 DPNKPRDKMSSYAFFVQMCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFENMA 88
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 89 KSDKARYDREM 99
>gi|118343938|ref|NP_001071793.1| transcription factor protein [Ciona intestinalis]
gi|70570759|dbj|BAE06616.1| transcription factor protein [Ciona intestinalis]
Length = 164
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PK+P TA+F+FM+D R++ + +P S +T ++K G+KW+ + ++K+P+ KAA
Sbjct: 17 DKNAPKKPLTAYFIFMNDCRQKVIKENP-SLSITEISKLVGKKWRETSTKDKEPFNKKAA 75
Query: 165 ELKADYSKAME 175
+L+ +Y+K +E
Sbjct: 76 KLREEYNKKLE 86
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N KRP + FFLF +FR + K +P + +AK+ GE W N +D EK+PY+
Sbjct: 105 KKKDPNALKRPLSGFFLFCSEFRPKIKSTNPGI-SIGDMAKKLGEMWINYSDREKQPYIT 163
Query: 162 KAAELKADYSK 172
KAA+LK Y K
Sbjct: 164 KAADLKEKYEK 174
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKR P+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDLNAPKRTPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KA +LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAVKLKEKYEK 157
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP +A+FL+ + R+E K+ PD +T ++K+AGE WK M D +K + +KAA
Sbjct: 556 DPNAPKRPQSAYFLWFNANREELKKDTPDI-SITDLSKKAGEVWKQMEDTDKTEWNEKAA 614
Query: 165 ELKADYSKAME 175
E K +Y KAME
Sbjct: 615 EAKKEYEKAME 625
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKRPP+AFFLF ++R + K HP + AK+ GE W + ++K+PY
Sbjct: 2 KKKDPNAPKRPPSAFFLFCSEYRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQ 60
Query: 162 KAAELKADYSK 172
KAA+LK Y K
Sbjct: 61 KAAKLKEKYEK 71
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K +D N PKRP + FFLF +F + K +P + VAK+ GE WKN+ D EK+PY+
Sbjct: 23 KKNDPNAPKRPLSGFFLFCSEFHPKMKSTNPGIS-IGDVAKKLGEMWKNLNDSEKQPYVT 81
Query: 162 KAAEL 166
K A+L
Sbjct: 82 KVAKL 86
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
++K+ + P +KK D N PKRPP+AFFLF ++R ++K HP + VAK+
Sbjct: 284 QQKRNENLHPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKFKGEHP-GLSIGDVAKKL 342
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++K+PY
Sbjct: 343 GEMWNNTAADDKQPY 357
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
++K+ D +KPK P TAFF F ++ R E ++ V +AK GE+WKNMT EE+ PY
Sbjct: 244 KRKEKDPSKPKHPVTAFFAFTNERRAALLE---ENHNVLQIAKILGEEWKNMTKEERAPY 300
Query: 160 LDKAAELKADYSKAME 175
AAE K Y ME
Sbjct: 301 EQIAAEAKEKYMGEME 316
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV--TGVAKEAGEKWKNMTDEEKKPY 159
K+SD N+PK+PPT+F LF + RK+ + P GV T + KWK++ EK+ +
Sbjct: 374 KNSDPNRPKKPPTSFLLFSKETRKKLVQERP---GVNNTTINALISLKWKDLGTAEKQKW 430
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKADNE 190
+D+AA Y K +E +YN++ K E
Sbjct: 431 VDEAAGAMVQYKKEVE---EYNKLHVKEQQE 458
>gi|145540136|ref|XP_001455758.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423566|emb|CAK88361.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHP--DSKG------VTGVAKEAGEKWKNM 151
+KK+ D N PKRP T FFLF +R + E +P D + +T +++ AG+KW +M
Sbjct: 24 KKKERDPNAPKRPLTPFFLFSQKYRDKVLERNPGIDQRDYSLEVKLTQISQMAGQKWNSM 83
Query: 152 TDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGD 209
++EEK+PY+D+ E K Y ++ YN+ NE + K +++DK+ K D
Sbjct: 84 SEEEKQPYVDQYNEAKNKYDGDLKV---YNDKHGLNTNEKKRKKSEKLDDKSVKSGQD 138
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 81 KKPAERKKPTS-TEPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
KKPA++ K +PR K++ KK D N PKRP +A+ L+++ R++ K HP +T
Sbjct: 104 KKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISIT 162
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
++K+AGE WK M+ E+K+ + KA + K DY KAM
Sbjct: 163 DLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAM 198
>gi|410955200|ref|XP_003984245.1| PREDICTED: high mobility group protein B2-like [Felis catus]
Length = 329
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + +AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLP-IGDIAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYGK 157
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +KP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+++EK + D A
Sbjct: 5 DPSKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSEKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + AK+
Sbjct: 72 EREMKTYIPPKGE-TKKKSKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDAAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178
GE W N +EK+PY KAA+LK Y K + G
Sbjct: 130 GEMWNNTAADEKQPYEKKAAKLKEKYEKDIAAYG 163
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 41 EECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E + E A+ +K + ER+ T P+
Sbjct: 25 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDMAKADKAR-YEREMKTYIPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +KK D N PKRPP+AFFLF ++ + K HP + VAK+ GE W N E+K
Sbjct: 84 E-TKKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKLGELWNNTAAEDK 141
Query: 157 KPYLDKAAELKADYSKAM 174
+PY KAA+LK + K +
Sbjct: 142 QPYGKKAAKLKEKHEKGI 159
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK+ + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKRKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ERK T P ++KK D N PKRPP AFFLF ++ + K HP + VAK+
Sbjct: 80 ERKMKTYIPPPKGEIKKKFKDPNAPKRPPLAFFLFYSEYYPKIKGEHP-GLSIGDVAKKL 138
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 139 GEMWNNTAADDKQPYEKKAAKLKEKYEK 166
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 16 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 75
Query: 167 KADYSKAM 174
KA Y + M
Sbjct: 76 KAHYERKM 83
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKA--MEGNGDY 180
GE W N ++K+PY KAA+LK Y K M GN Y
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEKVRRMAGNLRY 167
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|413925111|gb|AFW65043.1| hypothetical protein ZEAMMB73_846021 [Zea mays]
Length = 76
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 43/67 (64%), Gaps = 11/67 (16%)
Query: 54 MHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPP 113
MHSCSLD KI+M LEAQVVEK E+ A+RKK + AK KD+ K KR P
Sbjct: 1 MHSCSLDEKIRMTLEAQVVEKTVEV---ASADRKKSS-----AKGGGNKDA---KRKRSP 49
Query: 114 TAFFLFM 120
TAFFLFM
Sbjct: 50 TAFFLFM 56
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK DSN PKRPP+ FFLF +F + K ++ + VAK GE W N++D +K+ Y+
Sbjct: 11 KKKKDSNAPKRPPSGFFLFFSEFHPKIKSSN-HGISIRDVAKTLGEMWNNLSDSKKQSYI 69
Query: 161 DKAAELK 167
K A+LK
Sbjct: 70 TKPAKLK 76
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
+R+ T P+ + KK D N PKRPP+AFF+F D R + KE +P + +AK+
Sbjct: 94 DREMKTYVPPKGAKKVKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKL 152
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK---AMEGNGDYNEVEDKADNEVEDKAEN 197
GE W + ++K PY KAA+LK Y K A G + ++ EVED N
Sbjct: 153 GELWATQSAKDKAPYEAKAAKLKEKYEKDVAAYRAKGGSGKSDELKLQEVEDIVLN 208
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 83 PAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHP-DSKGVTGVA 141
PA + + + R +++ D NKP+ +A+ F+ R+E+K+ HP S +
Sbjct: 5 PASEARSVAEKARLRQIEAMTKDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFS 64
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
K+ E+WK M+ +EK + + A KA Y + M
Sbjct: 65 KKCSERWKTMSSKEKVKFDELAKTDKARYDREM 97
>gi|444515932|gb|ELV11007.1| High mobility group protein B3 [Tupaia chinensis]
Length = 212
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N P+RPP+ F LF +F + K +P + VAK+ E W N +D EK+PY+ KAA
Sbjct: 89 DPNAPERPPSGFLLFCSEFHLKIKSTNPGI-SIGDVAKKLVEMWNNFSDSEKQPYITKAA 147
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 148 KLKEKYKK 155
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D + PKRPP+AFFLF ++R E K P + + VAK GE W N + K+PY
Sbjct: 24 KKKFKDPSAPKRPPSAFFLFCSEYRPEIKGERP-GRFIGDVAKRLGEMWNNTAADGKQPY 82
Query: 160 LDKAAELKADYSK 172
AA+LK Y K
Sbjct: 83 EKNAAKLKGKYEK 95
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKR P+ FFLF +FR + K +P + VAK+ GE W N++D EK+PY+ A
Sbjct: 586 DPNAPKRRPSVFFLFCSEFRLKIKSTNPGIS-IGDVAKKLGEMWNNLSDSEKQPYITNGA 644
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PK PP+AFFLF ++R + K HP + V K+
Sbjct: 72 EREMKTYISPKGE-TKKKFKDPNAPKTPPSAFFLFCSEYRPKIKGEHPGL-SIGDVVKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY AA+LK Y K
Sbjct: 130 GEMWTNTAADDKQPYEKMAAKLKEKYEK 157
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N KRPP+AFF+F DFR + K HP + AK+ G W + EEKKPY
Sbjct: 85 KKRFKDPNALKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNSSAAEEKKPY 143
Query: 160 LDKAAELKADYSK 172
KAA LK Y K
Sbjct: 144 EKKAATLKEKYDK 156
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKRPP+ FFLF +F + K +P + VAK+ GE W N++D +K+ Y++
Sbjct: 84 KKKDPNAPKRPPSGFFLFFSEFCSKIKSTNPGI-SIGDVAKKLGEMWNNLSDSKKQLYIN 142
Query: 162 KAAELK------ADYSKAMEGN 177
K A+LK ADY +G
Sbjct: 143 KDAKLKKYEKDVADYKGEFDGT 164
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 81 KKPAERKKPTS-TEPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
KKPA++ K +PR K++ KK D N PKRP +A+ L+++ R++ K HP +T
Sbjct: 515 KKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISIT 573
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
++K+AGE WK M+ E+K+ + KA + K DY KAM
Sbjct: 574 DLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAM 609
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 81 KKPAERKKPTS-TEPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
KKPA++ K +PR K++ KK D N PKRP +A+ L+++ R++ K HP +T
Sbjct: 515 KKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISIT 573
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
++K+AGE WK M+ E+K+ + KA + K DY KAM
Sbjct: 574 DLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAM 609
>gi|440298630|gb|ELP91261.1| HMG (high mobility group) box domain containing protein, partial
[Entamoeba invadens IP1]
Length = 214
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PK+P T + +F+++ R+E++E P+ K +T +AK+A E W++M +E+K+ YLDKA
Sbjct: 114 DPNLPKKPMTPYLMFLNEHREEFREKFPELK-ITEIAKKAAEIWRDMKEEDKQVYLDKAK 172
Query: 165 ELKADYSKAMEGNGDYNE 182
+ Y + M+ YNE
Sbjct: 173 KATEKYLEEMKT---YNE 187
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 81 KKPAERKKPTS-TEPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
KKPA++ K +PR K++ KK D N PKRP +A+ L+++ R++ K HP +T
Sbjct: 515 KKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISIT 573
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
++K+AGE WK M+ E+K+ + KA + K DY KAM
Sbjct: 574 DLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAM 609
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 120 MDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG-NG 178
M +FR ++K+ +P++K V V K AG KWK+MTD EK PY+ +A + K +Y K + N
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPYVARAEKAKEEYEKTLRAYNN 60
Query: 179 DYNEVEDKADNEVEDKAENEV 199
E + A+ E DK+++EV
Sbjct: 61 GLAESKGSAEEEGSDKSKSEV 81
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ TS P +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTSYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 131 GEMWNNTAADDKQPYEKKAAKLKEKYEK 158
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
KR RK+ D N PKRPP+AFF+F ++R K+ P + AK+ GE W ++ E
Sbjct: 88 GKRGRKR-KDPNAPKRPPSAFFVFCSEYRPSVKQQFP-GLSIGDCAKKLGEMWSKLSQSE 145
Query: 156 KKPYLDKAAELKADYSKAM 174
K+PY +KA +L+ Y + M
Sbjct: 146 KQPYEEKAQKLREKYDRDM 164
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
+RK T P ++KK D N PKRPP+AFFLF + + K HPD + VAK+
Sbjct: 70 KRKIKTYIPPPKGEIKKKFKDPNAPKRPPSAFFLFYSVYYPKIKGEHPDL-SIGDVAKKL 128
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 129 GEMWNNAAADDKQPYEKKAAKLKEKYEK 156
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ FM RKE+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 62
Query: 164 AELKADYSK 172
KA Y +
Sbjct: 63 KADKARYKR 71
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 56 SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTA 115
S L + KM EA+ E K + R+K + + R +KK D N PKRPP+A
Sbjct: 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNAPKRPPSA 95
Query: 116 FFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FFLF ++R + K HP + VAK+ GE W N ++K+PY KAA+LK Y K
Sbjct: 96 FFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 151
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RKK D N PKRPP+AFF+F D R + KE +P + +AK+ GE W ++K PY
Sbjct: 86 RKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKLGELWSTQGPKDKAPY 144
Query: 160 LDKAAELKADYSK 172
+AA+LK Y K
Sbjct: 145 EARAAKLKEKYEK 157
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar SAW760]
Length = 111
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N+PK+P +A+FL++++ R KE HPD K T ++K A E+WK + +EEKK Y KA
Sbjct: 24 NRPKKPQSAYFLYLNEHRASIKEEHPDIK-FTEISKVASEQWKALGEEEKKEYQAKADAA 82
Query: 167 KADYSKAME 175
+ Y K ME
Sbjct: 83 REQYKKDME 91
>gi|328773430|gb|EGF83467.1| hypothetical protein BATDEDRAFT_85013 [Batrachochytrium
dendrobatidis JAM81]
Length = 505
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP A+ LF+ ++ E +P+ K V G W+++TD +K+PYLD AA
Sbjct: 89 DPNAPKRPIPAYVLFVKSQYQKIAEDNPELKP-KDVMVILGAHWRDLTDTQKQPYLDMAA 147
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKED 207
+ Y+ ME D +ED A N+ D E D ++ ED
Sbjct: 148 TYREQYTFDMEAYKDKLRLEDVAGNDHSDVEEIASNDHSDAED 190
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N P+RP + FFLF +F E K +P + VAK+ GE W N+ D EK+PY+ K A
Sbjct: 27 DPNAPQRPLSGFFLFCSEFCPEIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVA 85
Query: 165 ELK 167
+LK
Sbjct: 86 KLK 88
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF ++ + K HP + VAK+ GE W N +K+P
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKLGEMWNNTAAGDKQPC 144
Query: 160 LDKAAELKADYSKAM 174
KAA+LK Y K +
Sbjct: 145 ERKAAKLKVKYEKGI 159
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D N PKRP + FFLF +F + K +P + VAK+ GE W N+ D EK+PY+ K
Sbjct: 24 NDPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKV 82
Query: 164 AELK 167
A+LK
Sbjct: 83 AKLK 86
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 29 MRGRDGSAFARCEECN----KNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINK 80
+RG+ S + C K P A ++ CS K E E A+ +K
Sbjct: 9 LRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 68
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
+ ER+ T P+ + +KK D + PKRPP+AFFLF ++R + K HP + V
Sbjct: 69 VR-YEREMKTYIPPKGE-TKKKFKDPSAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDV 125
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
AK+ GE W N ++K+PY KA++LK Y K
Sbjct: 126 AKKLGEMWNNTAADDKQPYEKKASKLKEKYEK 157
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP AFFLF ++R + + HP + AK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPLAFFLFCSEYRPKIEGEHPGL-SIGDTAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N +K+PY +AA+LK Y K
Sbjct: 130 GELWNNTAANDKQPYEKEAAKLKEKYEK 157
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG------VT 138
ER+ T P+ + +KK D N PKRPP+AFFLF ++ HP KG +
Sbjct: 21 EREMKTYISPKGE-TKKKFKDPNAPKRPPSAFFLFCSEY-------HPKIKGERPGLSIG 72
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
AK+ GE W + E+K+PY KAA+LK Y K
Sbjct: 73 DAAKKLGETWNSTAAEDKQPYETKAAKLKEQYEK 106
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK GE W TD EK PY +AA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGEMWSTTTDLEKHPYEQRAA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N P RPP+ F LF +F + K +P + VAK+ E W N++ EK+PY+
Sbjct: 109 KKKDPNAPTRPPSGFCLFCSEFHPKIKSTNPGI-SIGDVAKKLSEMWSNLSGSEKQPYIT 167
Query: 162 KAAELKADYSK 172
KAA+L+ Y K
Sbjct: 168 KAAQLREKYEK 178
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D N PKRP + FFLF +F + K +P + VAK+ GE W N+ D EK+PY+ K
Sbjct: 12 NDPNAPKRPLSGFFLFCSEFCPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYVTKV 70
Query: 164 AELK------ADY 170
A+LK ADY
Sbjct: 71 AKLKKYEKDVADY 83
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEK 147
T P+ +R +K D N PKRPP+AFF++ ++R + + +P G+T +AK+ GE
Sbjct: 77 TYVPPKGERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP---GLTIGSIAKKLGEM 133
Query: 148 WKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184
W N +EK Y K A+LK Y K M +VE
Sbjct: 134 WNNAPADEKSIYERKTAKLKEKYDKDMASYRSKGKVE 170
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEK 147
T P+ +R +K D N PKRPP+AFF++ ++R + + +P G+T +AK+ GE
Sbjct: 77 TYVPPKGERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP---GLTIGSIAKKLGEM 133
Query: 148 WKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184
W N +EK Y K A+LK Y K M +VE
Sbjct: 134 WNNAPADEKSIYERKTAKLKEKYDKDMASYRSKGKVE 170
>gi|30688974|ref|NP_568430.2| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
gi|332005779|gb|AED93162.1| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
Length = 148
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 27/134 (20%)
Query: 33 DGSAFARCEE--CNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPT 90
D S FARCE+ CNK +PV L+ MH C A L R T
Sbjct: 8 DSSIFARCEDVDCNKKIPVELVRMHICY--AMFHRTL-----------------ARGFGT 48
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
T+ + K ++ K T F +FM+ FRK ++ + + G +K E WK+
Sbjct: 49 QTQAKKKP-----TNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEG-SKIGWEMWKS 102
Query: 151 MTDEEKKPYLDKAA 164
MT++EKK YLDKAA
Sbjct: 103 MTEDEKKDYLDKAA 116
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 187
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 188 KLKEKYEK 195
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 66 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLP-IGDVAKKL 123
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N +EK+PY KAA+LK Y K
Sbjct: 124 GEMWINTAADEKQPYEKKAAKLKEKYEK 151
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA
Sbjct: 4 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 62
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 63 KLKEKYEK 70
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 13/113 (11%)
Query: 89 PTSTE---PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
P T PR KR KK D NKPKRP TAF L++++ R + K +P K +T +AK+ G
Sbjct: 659 PAKTVSEKPRQKR-AKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGG 716
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENE 198
E WK + D K + KAA+ K +Y+KAM+ E E ++ EDK +E
Sbjct: 717 EMWKELKD--KSEWEGKAAKAKEEYNKAMK------EYEASGGSKSEDKKSSE 761
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG--VAK 142
ER+ T P+ + ++KK D N PKRPP+AFFLF ++R + K HP G++ VAK
Sbjct: 87 EREMKTYIPPKGE-MKKKFKDPNAPKRPPSAFFLFCSEYRSKIKGEHP---GLSNGDVAK 142
Query: 143 EAGEKWKNMTDEEKKPY 159
+ GE W N ++K+PY
Sbjct: 143 KLGEIWNNTAADDKQPY 159
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 98
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 99 KLKEKYEK 106
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF D+R + KE HP + VAK+
Sbjct: 72 EREIKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSDYRPKIKE-HP-GLSIGDVAKKL 128
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 129 GEMWNNTATDDKQPYEKKAAKLKEKYEK 156
>gi|183212219|gb|ACC54772.1| high mobility group box 3 [Xenopus borealis]
Length = 152
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKKPY 159
D N PKRPP+ FFLF +FR K +P G+T VAK+ GE W N+ D EK+PY
Sbjct: 97 DPNAPKRPPSGFFLFCSEFRPNIKSTNP---GITIGDVAKKLGEMWNNLGDSEKQPY 150
>gi|397502952|ref|XP_003822100.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
gi|410056873|ref|XP_003317692.2| PREDICTED: high mobility group protein B3-like [Pan troglodytes]
Length = 221
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N KRP + FFLF +F + K +P + +AK+ GE W N +D EK+PY+
Sbjct: 105 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI-SIGDMAKKLGEMWINYSDREKQPYIT 163
Query: 162 KAAELKADYSK 172
KAA+LK Y K
Sbjct: 164 KAADLKEKYEK 174
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 33 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 90
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 91 GEMWNNTAADDKQPYEKKAAKLKEKYEK 118
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 13/113 (11%)
Query: 89 PTSTE---PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
P T PR KR KK D NKPKRP TAF L++++ R + K +P K +T +AK+ G
Sbjct: 531 PAKTVSEKPRQKR-AKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGG 588
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENE 198
E WK + D K + KAA+ K +Y+KAM+ E E ++ EDK +E
Sbjct: 589 EMWKELKD--KSEWEGKAAKAKEEYNKAMK------EYEASGGSKSEDKKSSE 633
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYK-EAHPDSKGVTGVAKEAGEKWKNMTDEEKKP 158
+K D NKPKR TA+F F+ DFR++ K +A + + + +A GEKW++MTD+EKK
Sbjct: 97 KKMGKDPNKPKRCQTAYFFFLHDFREQMKGKALLEGEKIPALA---GEKWRSMTDDEKKV 153
Query: 159 YLDKAAELKADYSKAME 175
Y D + K Y KAME
Sbjct: 154 YNDMVQKDKQRYEKAME 170
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
K+P +A+ F+ D+R K+ + V VAK G W M + EK PY +K KA
Sbjct: 28 KKPTSAYIYFVSDYRLVLKKKGKATNKVNEVAKMCGTAWNAMKENEKAPYYEKYNIDKAR 87
Query: 170 YSKAMEG 176
Y K E
Sbjct: 88 YLKEKEA 94
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
+RK T P ++KK D N PKRPP+AFFLF + + K HPD + VAK+
Sbjct: 70 KRKIKTYIPPPKGEIKKKFKDPNAPKRPPSAFFLFYSVYYPKIKGEHPDL-SIGDVAKKL 128
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 129 GEMWNNAAADDKQPYEKKAAKLKEKYEK 156
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ FM RKE+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 2 GDPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 61
Query: 163 AAELKADYSKAME 175
A KA Y + ++
Sbjct: 62 AKADKARYKRKIK 74
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF +FR + K HP + VAK+ GE W N ++K+PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMA 64
Query: 164 AELKADYSKAM 174
K Y K M
Sbjct: 65 KADKLRYEKEM 75
>gi|10176745|dbj|BAB09976.1| unnamed protein product [Arabidopsis thaliana]
Length = 221
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 38/165 (23%)
Query: 10 PKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEA 69
P+ RKRV A + R DGSAF +CEEC + +AL MH C
Sbjct: 38 PRTRKRVQA---------VRRAADGSAFKKCEECGVMIAIALYDMHECG----------- 77
Query: 70 QVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKE 129
K++ +R K ++ + S ++P+ P F F+++FR+ Y
Sbjct: 78 ---------EKRREVKRFKYIASGNIDNISKPIGSFEDEPRSP---FVFFLEEFRENYNG 125
Query: 130 AHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
D+ + WKNM+ E++KP+ +A E+ + +S+ +
Sbjct: 126 DLVDASRI------CFNVWKNMSAEDQKPFNARAMEVDSAHSRKL 164
>gi|183212221|gb|ACC54773.1| high-mobility group box 1 beta [Xenopus borealis]
Length = 95
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF DFR + K +P S + +AK+
Sbjct: 20 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSDFRPKIKGEYPGS-TIGDIAKKL 77
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++K PY
Sbjct: 78 GEMWNNTATDDKLPY 92
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 36/45 (80%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
RPP+AFF+F+++FRK +K+ +P+ K V+ V K GE+WK++++ E
Sbjct: 58 RPPSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAE 102
>gi|440911425|gb|ELR61099.1| High mobility group protein B3, partial [Bos grunniens mutus]
Length = 192
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D PKR P+ LF +F + K HP + VAK+ GE W N++D EK+PY++
Sbjct: 87 KKKDPKAPKRLPSGCLLFCSEFHPKIKSTHPGI-SIRDVAKKLGEMWNNLSDSEKQPYIN 145
Query: 162 KAAELK 167
KAA+LK
Sbjct: 146 KAAKLK 151
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK +G+ W TD EK+PY +AA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKASGKMWSATTDAEKQPYEQRAA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYQEELE 158
>gi|32335|emb|CAA78938.1| HMG2B [Homo sapiens]
Length = 186
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 70 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 128
Query: 167 KADYSKAMEGNG 178
K Y K + G
Sbjct: 129 KEKYEKDIAAYG 140
>gi|390348241|ref|XP_784026.3| PREDICTED: uncharacterized protein LOC578784 [Strongylocentrotus
purpuratus]
Length = 273
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKP 158
+ +K D +KPK+PPTA+F F+ DFR++ K KG + + GE+W +TDE+KKP
Sbjct: 99 VYRKVRDPDKPKKPPTAYFYFLTDFREQMK-GKTIEKG-RRLTEICGEEWNKLTDEQKKP 156
Query: 159 YLDKAAELKADYSKAME 175
YL++ A Y ME
Sbjct: 157 YLERVALEYKTYQGKME 173
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK G+ W TD EK+PY +AA
Sbjct: 152 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSATTDLEKQPYEQRAA 210
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 211 LLRAKYFEELE 221
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 100 RKKDSDSN-------KPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNM 151
RKKD N KPK +++ F+ ++R ++KE P++ G +++ EKW+++
Sbjct: 56 RKKDEVMNMGKEIQLKPKANVSSYIHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSI 115
Query: 152 TDEEKKPYLDKAAELKADYSKAM 174
+ EK Y A KA Y + M
Sbjct: 116 SKHEKAKYEALAKLDKARYQEEM 138
>gi|351705938|gb|EHB08857.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 176
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+ FFLF ++ + K HP + VAK+
Sbjct: 10 EREMKTYIPPKGEA-KKKFKDPNAPKRPPSTFFLFCSEYCPKIKGEHP-GLSIGDVAKKL 67
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
E W N ++K+PY KAA+LK +Y K
Sbjct: 68 EEMWNNAAADDKQPYEKKAAKLKENYEK 95
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK +G+ W TD EK+PY +AA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKASGKMWSATTDAEKQPYEQRAA 149
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 150 LLRAKYQEELE 160
>gi|367003789|ref|XP_003686628.1| hypothetical protein TPHA_0G03540 [Tetrapisispora phaffii CBS 4417]
gi|357524929|emb|CCE64194.1| hypothetical protein TPHA_0G03540 [Tetrapisispora phaffii CBS 4417]
Length = 452
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 16/98 (16%)
Query: 87 KKPTSTEPRA---KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
KK +ST+ R K+L+K+ PKRP +A+FLF R E + HP +K V ++K
Sbjct: 232 KKLSSTQTRIEKRKQLKKQG-----PKRPSSAYFLFSMSIRNELLQEHPHAK-VPELSKL 285
Query: 144 AGEKWKNMTDEEKKPYLD-------KAAELKADYSKAM 174
A +WK++TDE+KKP+ D K L+ DY K +
Sbjct: 286 ASIRWKDLTDEQKKPFYDEFRTNWEKYRVLRDDYEKTL 323
>gi|354484377|ref|XP_003504365.1| PREDICTED: high mobility group protein B2-like [Cricetulus griseus]
Length = 264
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 147 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 205
Query: 167 KADYSK 172
K Y K
Sbjct: 206 KEKYEK 211
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPP+ FFLF +F + + +P + VAK+ GE W N +D EK+PY
Sbjct: 85 KKKRDPNAPKRPPSGFFLFCSEFCPKIRSNNPGI-SIGDVAKKLGEMWNNKSDSEKQPYN 143
Query: 161 DKAAELK-----ADY 170
KA +LK ADY
Sbjct: 144 TKATKLKYEKDVADY 158
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 69 EREMKTYIPPKGE-TKKKFKDRNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 126
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++K+PY
Sbjct: 127 GEMWSNTAADDKQPY 141
>gi|441618163|ref|XP_003271355.2| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 206
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PK P + FFLF +F + K P + VAK+ GE W N+ D EK+PY+ KAA
Sbjct: 95 DPNAPKMPQSGFFLFCSEFCLKIKSTKPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 153
Query: 165 ELK-----ADY 170
+LK ADY
Sbjct: 154 KLKYEKDVADY 164
>gi|397568766|gb|EJK46329.1| hypothetical protein THAOC_35006 [Thalassiosira oceanica]
Length = 356
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 67 LEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRK-KDSDSNKPKRPPTAFFLFMDDFRK 125
+E V + E N +KPA KP R K +K K D N+PK P TAF LF R+
Sbjct: 242 VEVDVSGQRTEANNEKPA--AKPAVAIKRVKSNKKGKVRDPNRPKAPLTAFNLFAKSRRE 299
Query: 126 EYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+ K ++PD K ++ G+ WK + D+E+K + D AA +A+Y +AM
Sbjct: 300 KIKTSNPD-KNFNEISALVGKAWKALADDERKQFFDDAAAERAEYKEAM 347
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 84 AERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
+E KK TE + + K D N PKR +A+F F+ DFRK+ HPD VT +K
Sbjct: 180 SEYKKSGGTEYKRGGGKVKAKDENAPKRSMSAYFFFVSDFRKK----HPDL-SVTETSKA 234
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
AG WK ++DE KKPY A + K Y + M
Sbjct: 235 AGAAWKELSDEMKKPYEAMAQKDKERYQREM 265
>gi|109076196|ref|XP_001085665.1| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 321
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 207 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 265
Query: 167 KADYSK 172
K Y K
Sbjct: 266 KEKYEK 271
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 119 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 178
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 179 KSDKARYDREMK 190
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +++ E+WK M+ +EK + + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KGDKARYDREM 75
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF +FR + K HP + VAK+ GE W N ++K+PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A K Y K M+
Sbjct: 64 AKADKLRYEKEMK 76
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF +FR + K HP + VAK+ GE W N ++K+PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A K Y K M+
Sbjct: 64 AKADKLRYEKEMK 76
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 74 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 131
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKA 173
GE W N ++K+PY KAA+LK Y K
Sbjct: 132 GEMWNNTAADDKQPYEKKAAKLKEKYEKV 160
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 6 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 65
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 66 AKADKARYEREMK 78
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF +FR + K HP + VAK+ GE W N ++K+PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A K Y K M+
Sbjct: 64 AKADKLRYEKEMK 76
>gi|62638360|ref|XP_574279.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|109460525|ref|XP_001074365.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K +Y K
Sbjct: 152 KEEYEK 157
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|268577181|ref|XP_002643572.1| Hypothetical protein CBG16279 [Caenorhabditis briggsae]
Length = 241
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 96 AKRLRKKDSDS-NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
++R ++ DS ++ KRP F LF R E + P K + ++K+ GE WK MTDE
Sbjct: 50 SQRQQRPSQDSADRVKRPMNPFLLFCQKRRGELMKGQPGMKP-SDISKQLGEVWKGMTDE 108
Query: 155 EKKPYLDKAAELKADYSK 172
+KKPY+D+A +LKAD+ K
Sbjct: 109 DKKPYIDEAHKLKADFEK 126
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P + +KK D N PKRPP+AFFLF ++ + K HP V VAK+
Sbjct: 72 EREMKTYIPPPQEETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLCVGDVAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 131 GELWNNTAGDDKQPYEKKAAKLKEKYEK 158
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTASDDKQPYEKKAAKLKEKYEK 157
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + V+K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|145357661|ref|NP_196152.2| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
gi|61742741|gb|AAX55191.1| hypothetical protein At5g05330 [Arabidopsis thaliana]
gi|71905543|gb|AAZ52749.1| hypothetical protein At5g05330 [Arabidopsis thaliana]
gi|332003475|gb|AED90858.1| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
Length = 220
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 38/165 (23%)
Query: 10 PKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEA 69
P+ RKRV A + R DGSAF +CEEC + +AL MH C
Sbjct: 37 PRTRKRVQA---------VRRAADGSAFKKCEECGVMIAIALYDMHECG----------- 76
Query: 70 QVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKE 129
K++ +R K ++ + S ++P+ P F F+++FR+ Y
Sbjct: 77 ---------EKRREVKRFKYIASGNIDNISKPIGSFEDEPRSP---FVFFLEEFRENYNG 124
Query: 130 AHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
D+ + WKNM+ E++KP+ +A E+ + +S+ +
Sbjct: 125 DLVDASRI------CFNVWKNMSAEDQKPFNARAMEVDSAHSRKL 163
>gi|392883890|gb|AFM90777.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N P+RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+L
Sbjct: 92 NAPRRPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQL 150
Query: 167 KADYSK 172
K Y K
Sbjct: 151 KEKYEK 156
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAMEGNGDYN 181
K Y + M +YN
Sbjct: 65 KNDKVRYDREMR---NYN 79
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ +E+K+ HPDS +++ E+WK M+ +EK + + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCPREHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KGDKARYDREM 75
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 227 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 285
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 286 EKKAAKLKEKYEK 298
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP+ S + +K+ E+WK M+ +EK + D A
Sbjct: 146 DPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLA 205
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 206 KLDKVRYEREM 216
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK+P +AFFLF ++ R ++K V VAK AGE+WKNMT+E+K PY + A
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASL---LAENKNVREVAKIAGEQWKNMTEEQKGPYEEMAK 363
Query: 165 ELKADYSKAMEG 176
K Y + ME
Sbjct: 364 RNKLRYMQEMEA 375
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
++++ D NKPK+P ++F +F + RK + P T A KWK +++EE++ +
Sbjct: 427 KQQNVDPNKPKKPASSFLIFSKEARKNLAQERPVINNSTLNAL-ISVKWKELSEEERQIW 485
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKAD 188
KAAE Y K ME +YN+ +D
Sbjct: 486 NAKAAEAMEIYKKEME---EYNKTAATSD 511
>gi|443899697|dbj|GAC77026.1| isocitrate dehydrogenase, alpha subunit [Pseudozyma antarctica
T-34]
Length = 308
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KRLR D+ PKRPP+A+ LF ++ R+E ++ HP + V ++ E WK +TDE++
Sbjct: 222 KRLRDPDA----PKRPPSAYLLFQNEVRQEIRKKHP-GLPYSSVLRKVSEAWKELTDEQQ 276
Query: 157 KPYLDKAAE 165
K Y DK E
Sbjct: 277 KVYHDKTTE 285
>gi|50309549|ref|XP_454785.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643920|emb|CAG99872.1| KLLA0E18481p [Kluyveromyces lactis]
Length = 464
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
++K+ PKRP +A+FLF R E + +PD+K V ++K + KWK+MTDEEKKP+
Sbjct: 308 KRKELKKQGPKRPSSAYFLFSISIRPELLKQYPDAK-VPELSKLSSAKWKSMTDEEKKPF 366
Query: 160 LDK 162
D+
Sbjct: 367 FDQ 369
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RKK ++ PKRP F F D R E PD K + + K GEKW+ + K+ Y
Sbjct: 381 RKKYEETLPPKRPSGPFLQFTKDIRPLLVEEQPD-KTLIEITKLIGEKWRELDGPSKQKY 439
Query: 160 LD 161
D
Sbjct: 440 TD 441
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGNVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|119623033|gb|EAX02628.1| hCG1644442 [Homo sapiens]
Length = 201
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N KRP + FFLF +F + K +P + +AK+ GE W N +D EK+PY+
Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI-SIGDMAKKLGEMWINYSDREKQPYIT 143
Query: 162 KAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 KAADLKEKYEK 154
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF +FR + K HP + VAK+ GE W N ++K+PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A K Y K M+
Sbjct: 64 AKADKLRYEKEMK 76
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 84 AERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
+E KK TE + + K D N PKR +A+F F+ DFRK+ HPD VT +K
Sbjct: 180 SEYKKSGGTEYKRGGGKVKAKDENAPKRSMSAYFFFVGDFRKK----HPDL-SVTETSKA 234
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
AG WK ++DE KKPY A + K Y + M
Sbjct: 235 AGAAWKELSDEMKKPYEAMAQKDKERYQREM 265
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKA 173
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEKV 158
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK G+ W +TD EK PY +AA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTVTDLEKHPYEQRAA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
K P ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K P + V
Sbjct: 68 KAPYEREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIK-GEPPGLSIGDV 125
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
AK+ GE W N ++K+PY KAA+LK Y K
Sbjct: 126 AKKLGEMWNNTAADDKQPYEKKAAKLKEKYDK 157
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEG 176
GE W N ++K+P+ KAA+LK Y K + G
Sbjct: 130 GEMWNNTAADDKQPFEKKAAKLKEKYEKDIAG 161
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYISPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
+ KA Y + M+
Sbjct: 64 SKADKARYEREMK 76
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK MT E+K+ +
Sbjct: 119 KKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMTKEKKEEWD 177
Query: 161 DKAAELKADYSKAME-----GNGD 179
KA E K +Y KAM+ G GD
Sbjct: 178 RKAEEAKREYEKAMKEYSEGGRGD 201
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
Length = 104
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEA 144
K+ TST + KR+ +K D N PKR +A+ F +D R + +E +P G++ V K
Sbjct: 3 KEKTSTRTKTKRVERKKKDPNAPKRGLSAYMFFANDNRDKVREENP---GISFGQVGKML 59
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADY 170
GE+WK ++D E++PY +KAA K Y
Sbjct: 60 GERWKALSDSERRPYEEKAATDKKRY 85
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 97 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 154
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 155 GEMWNNTAADDKQPYEKKAAKLKEKYEK 182
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 29 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 88
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 89 AKADKARYEREM 100
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK G+ W +TD EK PY +AA
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTVTDLEKHPYEQRAA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 60 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 117
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 118 GEMWNNTAADDKQPYEKKAAKLKEKYEK 145
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 173 AM 174
M
Sbjct: 62 EM 63
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 60 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 117
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 118 GEMWNNTAADDKQPYEKKAAKLKEKYEK 145
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 2 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 61
Query: 173 AM 174
M
Sbjct: 62 EM 63
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + ++ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSERCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++K+PY
Sbjct: 130 GEMWNNTAADDKQPY 144
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KADKARYEREM 75
>gi|444707322|gb|ELW48604.1| High mobility group protein B4 [Tupaia chinensis]
Length = 189
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P S V VAK +G+ W MT EK+PY +AA
Sbjct: 91 DPQAPRRPPSSFILFCQDHYAQLKRENP-SWTVVQVAKASGKMWTVMTAVEKQPYEQRAA 149
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 150 LLRARYQEELE 160
>gi|403295709|ref|XP_003938773.1| PREDICTED: high mobility group protein B2 [Saimiri boliviensis
boliviensis]
Length = 158
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 100
Query: 167 KADYSK 172
K Y K
Sbjct: 101 KEKYEK 106
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KADKARYEREM 75
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 23 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 80
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 81 GEMWNNTAADDKQPYEKKAAKLKEKYEK 108
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 37 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 94
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 95 GEMWNNTAADDKQPYEKKAAKLKEKYEK 122
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGKHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73
Query: 173 AME 175
M+
Sbjct: 74 EMK 76
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A K Y + M+
Sbjct: 64 AKADKVRYEREMK 76
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ ++ KK D N PKRPP+AFFLF + R + K P + AK+
Sbjct: 72 EREMKTYIPPKGEKKGKKKKDPNAPKRPPSAFFLFCSEHRPQIKSESPGL-SIGDTAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W T ++K PY KAA+LK Y K
Sbjct: 131 GEMWSEQTPKDKLPYEQKAAKLKEKYEK 158
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + + A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEEMA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYEREM 75
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
GE W N ++K+PY KAA+LK Y K +
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEKEI 159
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
T P+ + KK D N PKRPP+AFF+F D R + KE +P + +AK+ GE W
Sbjct: 76 TYVPPKGAKKGKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKLGEMWA 134
Query: 150 NMTDEEKKPYLDKAAELKADYSK 172
+ ++K PY KAA LK Y K
Sbjct: 135 TQSAKDKAPYEAKAARLKEKYEK 157
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F +FR + KE P + VAK GE W ++ EEK+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKRLGEMWNKISSEEKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP++ + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 64 KLDKARYEREM 74
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F +FR + KE P + VAK GE W ++ EEK+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKRLGEMWNKISSEEKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP++ + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 64 KLDKARYEREM 74
>gi|194666188|ref|XP_875720.3| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|297473608|ref|XP_002686711.1| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|296488702|tpg|DAA30815.1| TPA: high-mobility group box 2-like [Bos taurus]
Length = 283
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 167 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 225
Query: 167 KADYSK 172
K Y K
Sbjct: 226 KEKYEK 231
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ EEK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 128 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSQQSAKDKQPYEQKAAKL 186
Query: 167 KADYSK 172
K Y K
Sbjct: 187 KEKYEK 192
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+KE HPDS G +K+ E+WK M+ +EK + A
Sbjct: 40 DPNKPRGKMSSYAFFVQTCREEHKEKHPDSSVGFAEFSKKCSERWKTMSAKEKSKFEGMA 99
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 100 KSGKVRYDREM 110
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 8 KPRGRMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 167 KADYSKAME 175
KA Y + M+
Sbjct: 68 KARYEREMK 76
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+ +K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREGHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD+ + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDAAVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A K Y + M+
Sbjct: 64 AKADKVRYEREMK 76
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK P +AFFLF ++ R ++K V VAK AGE+WKNMT+++K+PY + A
Sbjct: 295 DPLKPKHPLSAFFLFSNERRAAL---LAENKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 351
Query: 165 ELKADYSKAMEG 176
+ K Y++ ME
Sbjct: 352 KNKEKYTQEMEA 363
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
++D NKPK+P ++F LF + RK HP T A KWK + EEK+ + K
Sbjct: 418 NADPNKPKKPASSFLLFSKETRKSLVHEHPGINSSTLTAM-ISVKWKELIQEEKQIWNCK 476
Query: 163 AAELKADYSKAME 175
AAE Y K +E
Sbjct: 477 AAEAMEAYKKELE 489
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 88 KPTSTEPRAKRLRKKDSDS------NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVA 141
KP T P + L +K+ D N+ KRP + L+ D E K+ +PD++ ++
Sbjct: 153 KPIMTLPFVQVLNEKEQDKKKKKGGNEIKRPCPPYSLWCKDQWNEVKKENPDAE-FKDIS 211
Query: 142 KEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
G KWK +T EEKKPY +K K Y K M
Sbjct: 212 HILGAKWKTITAEEKKPYEEKYQVEKEAYLKLM 244
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|291413749|ref|XP_002723129.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 219
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K HPDS +K+ E+WK M+ +E + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKRKHPDSSVNFVEFSKKCSERWKTMSAKENSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++K+PY
Sbjct: 130 GEMWNNTAADDKQPY 144
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KADKARYEREM 75
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKRKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|344235655|gb|EGV91758.1| High mobility group protein B2 [Cricetulus griseus]
Length = 159
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 100
Query: 167 KADYSK 172
K Y K
Sbjct: 101 KEKYEK 106
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAVDDKQPYEKKAAKLKEKYEK 157
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+ + HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKVDKARYEREMK 76
>gi|291413747|ref|XP_002723128.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 175
Query: 167 KADYSK 172
K Y K
Sbjct: 176 KEKYEK 181
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 29 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKPKFEDMA 88
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 89 KSDKARYDREM 99
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK P +AFFLF ++ R ++K V VAK AGE+WKNMT+++K+PY + A
Sbjct: 29 DPLKPKHPLSAFFLFSNERRAAL---LAENKNVLEVAKIAGEEWKNMTEKQKRPYEEIAK 85
Query: 165 ELKADYSKAMEG 176
+ K Y++ ME
Sbjct: 86 KNKEKYTQEMEA 97
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
++D NKPK+P ++F LF + RK HP T A KWK + EEK+ + K
Sbjct: 152 NADPNKPKKPASSFLLFSKETRKSLVHEHPGINSSTLTAM-ISVKWKELIQEEKQIWNCK 210
Query: 163 AAELKADYSKAME 175
AAE Y K +E
Sbjct: 211 AAEAMEAYKKELE 223
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 74 KPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD 133
KPA+ K K + +KP +P +K K D N PKRP +A+ L+++ R+ K HP
Sbjct: 516 KPAK--KAKLVKDRKPRKKQPESK----KGKDPNAPKRPMSAYMLWLNASRERIKSDHP- 568
Query: 134 SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+T ++K+AGE WK M+ E+K+ + KA + + DY KAM
Sbjct: 569 GISITDLSKKAGELWKAMSKEKKEEWDRKAEDARRDYEKAM 609
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W ++K+PY KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +++ E+WK M+ +EK + +
Sbjct: 4 GDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKGDKARYDREM 75
>gi|412985385|emb|CCO18831.1| CG4797 [Bathycoccus prasinos]
Length = 669
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
S P AK+ KK+ D N PKRP + + +F + R + KE +PD +T VAKE G +WK+
Sbjct: 564 SGSPHAKK--KKEKDPNAPKRPLSTYMIFSAEMRAKVKEENPDFS-ITDVAKELGVRWKS 620
Query: 151 MTDEEKKPY 159
+TDEEK Y
Sbjct: 621 VTDEEKVKY 629
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFEDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|149060359|gb|EDM11073.1| rCG63620 [Rattus norvegicus]
Length = 198
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 81 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 139
Query: 167 KADYSK 172
K Y K
Sbjct: 140 KEKYEK 145
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 2 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 61
Query: 173 AM 174
M
Sbjct: 62 EM 63
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K++D N PKRP + FFLF +F + K +P + VAK+ GE W N+ D EK+PY+
Sbjct: 23 KNNDPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYIT 81
Query: 162 KAAE 165
K E
Sbjct: 82 KKYE 85
>gi|297297620|ref|XP_001106417.2| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 210
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
N PKRPP+AFFLF + R + K HP S G T AK+ GE W + ++K+PY KAA+
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSTGDT--AKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 166 LKADYSK 172
LK Y K
Sbjct: 151 LKEKYQK 157
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HP+S +K+ E+WK M+ +EK + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KSDKVCYDREM 75
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
>gi|417397133|gb|JAA45600.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 208
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|355778495|gb|EHH63531.1| hypothetical protein EGM_16518 [Macaca fascicularis]
Length = 210
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HP+S +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|355687725|gb|EHH26309.1| hypothetical protein EGK_16239 [Macaca mulatta]
Length = 209
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HP+S +K+ E+WK M+ +EK + A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KSDKVRYDREM 75
>gi|145356938|ref|XP_001422680.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582923|gb|ABP00997.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 622
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKR +A+ F R E A+P S GVT VAK GEKWK +TDEEK Y +A
Sbjct: 519 DPNAPKRGLSAYMFFSAAKRAEITAANP-SFGVTDVAKALGEKWKTITDEEKSVYQQQAD 577
Query: 165 ELKADYSKAME 175
E K Y + ME
Sbjct: 578 EDKIRYEREME 588
>gi|8393536|ref|NP_058883.1| high mobility group protein B2 [Rattus norvegicus]
gi|293340790|ref|XP_001063065.2| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|293352163|ref|XP_573272.3| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|1708260|sp|P52925.2|HMGB2_RAT RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|1304193|dbj|BAA12350.1| HMG2 [Rattus norvegicus]
gi|51259308|gb|AAH78866.1| Hmgb2 protein [Rattus norvegicus]
gi|58476482|gb|AAH89854.1| Hmgb2 protein [Rattus norvegicus]
gi|77567606|gb|AAI07456.1| Hmgb2 protein [Rattus norvegicus]
gi|149032266|gb|EDL87172.1| rCG59188 [Rattus norvegicus]
Length = 210
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ ++ F+ R+E+K+ HPD S + +K+ E+WK M +EK + D
Sbjct: 4 GDPKKPRGKMYSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMYAKEKGKFEDI 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|291413997|ref|XP_002723251.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|194208319|ref|XP_001498869.2| PREDICTED: high mobility group protein B2-like [Equus caballus]
Length = 210
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NK + +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKARGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|444708065|gb|ELW49184.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ERK T P+ + KK + + PKRPP AF LF ++R++ K H + VAK+
Sbjct: 21 ERKLKTYISPKGET--KKFKNPSAPKRPPWAFSLFSSEYRQKIKGVHLGL-SIGDVAKKL 77
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA LK Y K
Sbjct: 78 GEIWNNTVADDKQPYEKKAARLKEKYEK 105
>gi|431918327|gb|ELK17554.1| High mobility group protein B2 [Pteropus alecto]
Length = 209
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|426220609|ref|XP_004004507.1| PREDICTED: high mobility group protein B2 [Ovis aries]
Length = 205
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|73993609|ref|XP_543194.2| PREDICTED: high mobility group protein B2 isoform 1 [Canis lupus
familiaris]
gi|301753755|ref|XP_002912713.1| PREDICTED: high mobility group protein B2-like [Ailuropoda
melanoleuca]
gi|410956554|ref|XP_003984907.1| PREDICTED: high mobility group protein B2 [Felis catus]
gi|281338293|gb|EFB13877.1| hypothetical protein PANDA_000462 [Ailuropoda melanoleuca]
Length = 210
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|11321591|ref|NP_002120.1| high mobility group protein B2 [Homo sapiens]
gi|83035095|ref|NP_001032705.1| high mobility group protein B2 [Bos taurus]
gi|194688133|ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens]
gi|194688135|ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens]
gi|332820789|ref|XP_517538.3| PREDICTED: high mobility group protein B2 isoform 2 [Pan
troglodytes]
gi|332820791|ref|XP_003310651.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan
troglodytes]
gi|397505874|ref|XP_003823467.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan paniscus]
gi|397505876|ref|XP_003823468.1| PREDICTED: high mobility group protein B2 isoform 2 [Pan paniscus]
gi|397505878|ref|XP_003823469.1| PREDICTED: high mobility group protein B2 isoform 3 [Pan paniscus]
gi|410038949|ref|XP_003950520.1| PREDICTED: high mobility group protein B2 [Pan troglodytes]
gi|123374|sp|P26583.2|HMGB2_HUMAN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|109940084|sp|P40673.3|HMGB2_BOVIN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|32333|emb|CAA44395.1| HMG-2 [Homo sapiens]
gi|184236|gb|AAA58659.1| high mobility group 2 protein [Homo sapiens]
gi|12654471|gb|AAH01063.1| High-mobility group box 2 [Homo sapiens]
gi|54696426|gb|AAV38585.1| high-mobility group box 2 [Homo sapiens]
gi|61358840|gb|AAX41628.1| high-mobility group box 2 [synthetic construct]
gi|71679685|gb|AAI00020.1| HMGB2 protein [Homo sapiens]
gi|81674324|gb|AAI09756.1| High-mobility group box 2 [Bos taurus]
gi|119625163|gb|EAX04758.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|119625164|gb|EAX04759.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|123982946|gb|ABM83214.1| high-mobility group box 2 [synthetic construct]
gi|123997623|gb|ABM86413.1| high-mobility group box 2 [synthetic construct]
gi|189053183|dbj|BAG34805.1| unnamed protein product [Homo sapiens]
gi|208966462|dbj|BAG73245.1| high-mobility group box 2 [synthetic construct]
gi|296484972|tpg|DAA27087.1| TPA: high mobility group protein B2 [Bos taurus]
gi|380785663|gb|AFE64707.1| high mobility group protein B2 [Macaca mulatta]
gi|383417929|gb|AFH32178.1| high mobility group protein B2 [Macaca mulatta]
gi|383417931|gb|AFH32179.1| high mobility group protein B2 [Macaca mulatta]
gi|383417933|gb|AFH32180.1| high mobility group protein B2 [Macaca mulatta]
gi|384941858|gb|AFI34534.1| high mobility group protein B2 [Macaca mulatta]
gi|384946750|gb|AFI36980.1| high mobility group protein B2 [Macaca mulatta]
gi|410212048|gb|JAA03243.1| high-mobility group box 2 [Pan troglodytes]
gi|410212050|gb|JAA03244.1| high-mobility group box 2 [Pan troglodytes]
gi|410253758|gb|JAA14846.1| high-mobility group box 2 [Pan troglodytes]
gi|410253760|gb|JAA14847.1| high-mobility group box 2 [Pan troglodytes]
gi|410304294|gb|JAA30747.1| high-mobility group box 2 [Pan troglodytes]
gi|410304296|gb|JAA30748.1| high-mobility group box 2 [Pan troglodytes]
gi|410337391|gb|JAA37642.1| high-mobility group box 2 [Pan troglodytes]
gi|410337393|gb|JAA37643.1| high-mobility group box 2 [Pan troglodytes]
gi|410337395|gb|JAA37644.1| high mobility group box 2 [Pan troglodytes]
gi|440908504|gb|ELR58513.1| High mobility group protein B2 [Bos grunniens mutus]
gi|738688|prf||2001363A high mobility group protein 2
Length = 209
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|383417927|gb|AFH32177.1| high mobility group protein B2 [Macaca mulatta]
Length = 206
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|351701092|gb|EHB04011.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 215
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 94 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 152
Query: 167 KADYSK 172
K Y K
Sbjct: 153 KEKYEK 158
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|296195168|ref|XP_002745261.1| PREDICTED: high mobility group protein B2-like isoform 2
[Callithrix jacchus]
Length = 205
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|291385922|ref|XP_002709517.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
gi|344288245|ref|XP_003415861.1| PREDICTED: high mobility group protein B2-like [Loxodonta africana]
Length = 210
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|297674678|ref|XP_002815340.1| PREDICTED: high mobility group protein B2 isoform 1 [Pongo abelii]
gi|297674680|ref|XP_002815341.1| PREDICTED: high mobility group protein B2 isoform 2 [Pongo abelii]
gi|395735499|ref|XP_003776594.1| PREDICTED: high mobility group protein B2 [Pongo abelii]
gi|402870856|ref|XP_003899415.1| PREDICTED: high mobility group protein B2 isoform 1 [Papio anubis]
gi|402870858|ref|XP_003899416.1| PREDICTED: high mobility group protein B2 isoform 2 [Papio anubis]
gi|402871219|ref|XP_003899573.1| PREDICTED: high mobility group protein B2-like [Papio anubis]
gi|90086209|dbj|BAE91657.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|332217748|ref|XP_003258025.1| PREDICTED: high mobility group protein B2 [Nomascus leucogenys]
gi|426346003|ref|XP_004040680.1| PREDICTED: high mobility group protein B2 isoform 1 [Gorilla
gorilla gorilla]
gi|426346005|ref|XP_004040681.1| PREDICTED: high mobility group protein B2 isoform 2 [Gorilla
gorilla gorilla]
gi|426346007|ref|XP_004040682.1| PREDICTED: high mobility group protein B2 isoform 3 [Gorilla
gorilla gorilla]
gi|54696428|gb|AAV38586.1| high-mobility group box 2 [Homo sapiens]
Length = 208
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|426251515|ref|XP_004019467.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|426230076|ref|XP_004009107.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|395840000|ref|XP_003792858.1| PREDICTED: high mobility group protein B2 [Otolemur garnettii]
Length = 209
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KNDKARYDREM 75
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTFIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKAHYEREMK 76
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF +FR + K HP + VAK+ GE W N ++K+P+
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAGDDKQPF 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 79 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 136
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 137 GEMWNNTAADDKQPYEKKAAKLKEKYEK 164
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 71
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 72 KADKARYEREM 82
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++K+PY
Sbjct: 130 GEMWNNTAADDKQPY 144
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+R +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
+ K+ RK+D + P+RPP++F LF D + K +P+ V VAK G+ W TD
Sbjct: 81 KTKKRRKRDPQA--PRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSAATDL 137
Query: 155 EKKPYLDKAAELKADYSKAME 175
EK PY +AA L+A Y + +E
Sbjct: 138 EKHPYEQRAALLRAKYFEELE 158
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++K+PY
Sbjct: 130 GEMWNNTAADDKQPY 144
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|444732758|gb|ELW73033.1| High mobility group protein B2 [Tupaia chinensis]
Length = 234
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 127 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 185
Query: 167 KADYSK 172
K Y K
Sbjct: 186 KEKYEK 191
>gi|47522942|ref|NP_999228.1| high mobility group protein B2 [Sus scrofa]
gi|123375|sp|P17741.2|HMGB2_PIG RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|164492|gb|AAA31051.1| non-histone protein HMG2 precursor [Sus scrofa]
Length = 210
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 94 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 152
Query: 167 KADYSK 172
K Y K
Sbjct: 153 KEKYEK 158
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P+ KR K D N PKRPP+AFF+F + R + K HP G+ +AK GE W +T
Sbjct: 81 PKGKR---KTKDPNAPKRPPSAFFVFCSEHRPKVKADHPGL-GIGEIAKRLGEMWGLLTP 136
Query: 154 EEKKPYLDKAAELKADYSK---AMEGNG 178
E K PY KAA+LK Y K A G G
Sbjct: 137 ETKSPYEKKAAKLKEKYEKDVAAYRGKG 164
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 94 PRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
PR K++ KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+
Sbjct: 492 PRKKQVESKKGKDPNVPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMS 550
Query: 153 DEEKKPYLDKAAELKADYSKAM 174
E+K+ + KA + K DY KAM
Sbjct: 551 KEKKEEWDRKAEDAKRDYEKAM 572
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
+K D N PKRPP+AFF+F ++R K HP+ + +AK+ GE W + +++ P+
Sbjct: 89 RKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLT-IGEIAKKLGELWSKQSSKDRAPFE 147
Query: 161 DKAAELKADYSK 172
KA +L+ Y K
Sbjct: 148 QKAGKLREKYEK 159
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFF+F D R KE +P + +AK+ GE W T ++K PY +A
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENPGI-SIGDIAKKLGEFWSTQTSKDKVPYEARAG 150
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 151 KLKEKYEK 158
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HP S G +K+ E+WK M+ +EK + D A
Sbjct: 4 DPNKPRGKTSSYAFFVATCREEHKKKHPGVSVGFAEFSKKCSERWKTMSAKEKVKFEDLA 63
Query: 164 AELKADYSKAME 175
K Y + M+
Sbjct: 64 KNDKVRYEREMK 75
>gi|109001746|ref|XP_001107984.1| PREDICTED: high mobility group protein B4-like [Macaca mulatta]
gi|67968844|dbj|BAE00779.1| unnamed protein product [Macaca fascicularis]
Length = 191
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P S V VAK G+ W TD EK PY +AA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENP-SWSVVQVAKATGKMWSATTDLEKHPYEQRAA 149
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 150 LLRAKYFEELE 160
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
+K D N PKRPP+AFF+F ++R K HP+ + +AK+ GE W + +++ P+
Sbjct: 89 RKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLT-IGEIAKKLGELWSKQSSKDRAPFE 147
Query: 161 DKAAELKADYSK 172
KA +L+ Y K
Sbjct: 148 QKAGKLREKYEK 159
>gi|402853838|ref|XP_003891595.1| PREDICTED: high mobility group protein B4 [Papio anubis]
Length = 191
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P S V VAK G+ W TD EK PY +AA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENP-SWSVVQVAKATGKMWSATTDLEKHPYEQRAA 149
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 150 LLRAKYFEELE 160
>gi|395326844|gb|EJF59249.1| hypothetical protein DICSQDRAFT_109066 [Dichomitus squalens
LYAD-421 SS1]
Length = 117
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D PKR +A+ F D+R+ K +PD+ G + K G KWK + DEEKKPYLD+AA
Sbjct: 28 DPKAPKRALSAYMFFSQDWRERIKAENPDA-GFGEIGKLLGAKWKELDDEEKKPYLDQAA 86
Query: 165 ELKADYSKAMEGNGDYN 181
AD ++A + DY+
Sbjct: 87 ---ADKARAEQEKNDYD 100
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AF LF ++R + K HP + VAK+ GE W N +K+PY
Sbjct: 36 KKKFKDPNAPKRPPSAF-LFCSEYRPKTKGEHP-GLSLGDVAKKLGEMWNNTAAGDKQPY 93
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 94 EKKAAKLKEQYEK 106
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFF+F D R + K +P + +AK+ GE W ++ +EK PY KA
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKVKGDNPGI-SIGDIAKKLGEMWSKLSPKEKSPYEQKAM 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKVETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|440799970|gb|ELR21013.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 174
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D+N+PKRP T++ F R E + P+ KG+ VAK G W+ ++DE KKPY+
Sbjct: 90 KKVKDANEPKRPMTSYLHFCAASRAEVVKKQPELKGIE-VAKALGAMWRELSDEGKKPYI 148
Query: 161 DKAAELKADYSKAME 175
D +A K Y K M+
Sbjct: 149 DLSAGDKKRYEKEMD 163
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKVETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP V VAK+
Sbjct: 72 EREMKTYIPPK-EETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SVGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNAAADDKQPYEKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|291415825|ref|XP_002724150.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEHSVKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS 66
Query: 166 LKADYSKAM 174
KA Y + M
Sbjct: 67 DKARYDREM 75
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKHPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG--VAKEAGEKWKNMTDEEK 156
++KK D N PKRPP+AFFLF ++R + K HP G++ VAK+ GE W N ++K
Sbjct: 11 MKKKFKDPNAPKRPPSAFFLFCSEYRSKIKGEHP---GLSNGDVAKKLGEIWNNTAADDK 67
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 68 QPYEKKAAKLKEKYEK 83
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
K+ +K D NKPKRPP+AFF+FM DFR++YK+ HP++K V +
Sbjct: 25 KQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAL 68
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PKRPP+ FFLF +F + K +P + VAK+ GE WKN++D E Y+
Sbjct: 34 KKKDPNAPKRPPSGFFLFCSEFHPKIKFTNPGI-SIGDVAKKLGEMWKNLSDSE-AAYVT 91
Query: 162 KAAELK 167
KAA+LK
Sbjct: 92 KAAKLK 97
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF +R + K HP + VAK+
Sbjct: 72 EREMKTYIPPK-RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKR 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAIADKARYER 73
Query: 173 AME 175
M+
Sbjct: 74 EMK 76
>gi|412992276|emb|CCO19989.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 94
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKR +A+F FM+D R + +A+PD K VT V K+ GE W+ M+D EK PY KA
Sbjct: 20 DPNAPKRNLSAYFFFMNDQRAKVVKANPDMK-VTEVGKKLGELWRAMSDSEKVPYNKKAD 78
Query: 165 ELKADYSKA 173
K Y KA
Sbjct: 79 ADKVRYEKA 87
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + DY KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARRDYEKAM 611
>gi|444727982|gb|ELW68448.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
++K +D N PKRPP+AF LF ++R + K HP + VAK+ GE W N ++K+PY
Sbjct: 74 KEKFTDPNAPKRPPSAFSLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 132
Query: 160 LDKAAEL 166
KAA+L
Sbjct: 133 EKKAAKL 139
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKPT KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPTEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|407404609|gb|EKF29994.1| high mobility group protein, putative [Trypanosoma cruzi
marinkellei]
Length = 361
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
E KK TE + + K D N PKR +A+F F DFRK+ HPD VT +K A
Sbjct: 272 EYKKSGGTEYKRGGGKVKVKDENAPKRSMSAYFFFASDFRKK----HPDL-SVTETSKAA 326
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
G WK ++DE KKPY A + K Y + M
Sbjct: 327 GAAWKELSDEMKKPYEAMAQKDKERYQREM 356
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + DY KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARRDYEKAM 611
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP V VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SVGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
G+ W N ++K+PY KAA+LK Y K
Sbjct: 130 GQMWNNTAADDKQPYEKKAAKLKEKYEK 157
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
A1163]
Length = 104
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEA 144
K+ TST + KR+ +K D N PKR +A+ F ++ R + +E +P G++ V K
Sbjct: 3 KEKTSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENP---GISFGQVGKML 59
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185
GE+WK ++D E++PY +KAA AD + + YN +D
Sbjct: 60 GERWKALSDSERRPYEEKAA---ADKKRYEDEKASYNAAQD 97
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP TAFFLF D R + K+ P+ V+ VAK+ G WK + + K+ Y +A
Sbjct: 7 DPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEVDAKTKEKYQSQAE 66
Query: 165 ELKADYSKAMEG 176
E KA Y++ ME
Sbjct: 67 ENKAKYAEEMEA 78
>gi|156837480|ref|XP_001642765.1| hypothetical protein Kpol_348p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113330|gb|EDO14907.1| hypothetical protein Kpol_348p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 389
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R ++ +K PKRP +A+FLF R E + HP +K V ++K A
Sbjct: 221 KKLSSTQTRIEK--RKQLKKQGPKRPSSAYFLFSMSIRNELLQEHPHAK-VPELSKLASI 277
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKPY D E ++++ K
Sbjct: 278 RWKELTDDQKKPYYD---EFRSNWEK 300
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
G+ W N ++K+PY KAA+LK Y K
Sbjct: 130 GQMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + DY KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARRDYEKAM 611
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K+PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + DY KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARRDYEKAM 611
>gi|444705868|gb|ELW47253.1| High mobility group protein B1 [Tupaia chinensis]
Length = 182
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKE 143
ER+ T P+ + +KK D N PKRPP+AFFLF ++ + KE HP + G VAK+
Sbjct: 60 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCPEYHPKLKEGHPGL--IIGDVAKK 116
Query: 144 AGEKWKNMTDEEKKPY 159
GE W N + K+PY
Sbjct: 117 LGEMWGNAAADGKQPY 132
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + KK D N PKRPP+AFFLF + R + K P + AK+
Sbjct: 72 EREMKTYIPPKGETKGKKKKDPNAPKRPPSAFFLFCSEQRPQIKSETPGL-SIGDTAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE+W T ++K P+ KAA+LK Y K
Sbjct: 131 GERWSEQTSKDKLPFEQKAAKLKEKYEK 158
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KGDKVRYEREM 75
>gi|332017611|gb|EGI58308.1| Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Acromyrmex echinatior]
Length = 1249
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 67 LEAQVVEKPAEINKKKPAE------RKKPTST---EPRAKRLRKKDSDSNKPKRPPTAFF 117
+E V+ P +K P ++ T+T R K+ +K D+ P++P + +F
Sbjct: 26 IEEHAVKSPVSTEEKAPDSVCDNGVKRSATATGNTPNRTKKRKKAPRDATAPRQPLSGYF 85
Query: 118 LFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177
LF++D R++ + +P S T + K +W + ++K+ YLD A + K Y++
Sbjct: 86 LFLNDRREKVRNQNP-SLTFTEITKLLAAEWSKLPIDQKQRYLDAAEQDKERYNREFS-- 142
Query: 178 GDYNEVED-KADNEVEDKAENEVEDKAEKEDGDEGGSEKD 216
DY + E + NE + + +NE + + D + ++KD
Sbjct: 143 -DYKQTEAYRLFNEKQSERQNENKKERNGTDINTEQNDKD 181
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + KK D N PKRPP+AFFLF + R + K P + AK+
Sbjct: 72 EREMKTYIPPKGETKGKKKKDPNAPKRPPSAFFLFCSEQRPQIKSETPGL-SIGDTAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE+W T ++K P+ KAA+LK Y K
Sbjct: 131 GERWSEQTSKDKLPFEQKAAKLKEKYEK 158
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KGDKVRYEREM 75
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKPT KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPTEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKLDHPGIS-ITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K+PY
Sbjct: 92 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPY 150
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 151 EKKAAKLKEKYEK 163
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|47124491|gb|AAH70148.1| High-mobility group box 4 [Homo sapiens]
Length = 112
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK G+ W TD EK PY + A
Sbjct: 15 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTATDLEKHPYEQRVA 73
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 74 LLRAKYFEELE 84
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 535 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 585
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + DY KAM
Sbjct: 586 EIWKGMSKEKKEEWDRKAEDARRDYEKAM 614
>gi|444322059|ref|XP_004181685.1| hypothetical protein TBLA_0G02260 [Tetrapisispora blattae CBS 6284]
gi|387514730|emb|CCH62166.1| hypothetical protein TBLA_0G02260 [Tetrapisispora blattae CBS 6284]
Length = 497
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 26/147 (17%)
Query: 39 RCEECNKNV-PVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA- 96
R N NV P + + H ++ A ++L+ + P KK ++T+ R
Sbjct: 289 RYFHANMNVSPTLMEATHPVNIQATSPIHLQN---------SHSSPNPPKKMSTTQSRIE 339
Query: 97 --KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
K+L+K+ PKRP +A+FLF R + E +P +K V ++K A +WK +TD+
Sbjct: 340 KRKQLKKQG-----PKRPSSAYFLFSMSIRSDLLEKYPQAK-VPELSKLASARWKELTDD 393
Query: 155 EKKPYLD-------KAAELKADYSKAM 174
EKKP+ D K L+++Y K +
Sbjct: 394 EKKPFYDEFRTNWEKYRVLRSEYEKTL 420
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 84 AERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
+E KK TE + + K D N PKR +A+F F+ DFRK+ HPD VT +K
Sbjct: 180 SEYKKSGGTEYKRGGGKVKAKDENAPKRSMSAYFFFVSDFRKK----HPDL-SVTETSKA 234
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
AG WK ++D+ KKPY A + K Y + M
Sbjct: 235 AGAAWKALSDDMKKPYEAMAQKDKERYQREM 265
>gi|110766132|ref|XP_001120264.1| PREDICTED: FACT complex subunit Ssrp1 [Apis mellifera]
Length = 728
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRPPTAF ++++ R+ K +P VT +AK+ GE W+ + D K + KAA
Sbjct: 545 DTNKPKRPPTAFMMWLNSARERIKAENP-GIAVTEIAKKGGEMWRELKD--KSEWEQKAA 601
Query: 165 ELKADYSKAM 174
+ K DYS +M
Sbjct: 602 KAKKDYSASM 611
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + DY KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARRDYEKAM 611
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFF+F D R K +P + +AK+ GE W T ++K+PY KA
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENPGI-SIGDIAKKLGELWSKQTPKDKQPYEAKAG 150
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 151 KLKEKYEK 158
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HP S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMSAKEKVKFEDLA 64
Query: 164 AELKADYSKAMEG 176
K Y + M+G
Sbjct: 65 KGDKVRYDREMKG 77
>gi|397788067|gb|AFO66682.1| SoxE [Sycon ciliatum]
Length = 439
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 19/154 (12%)
Query: 31 GRDGSAFARCEECNKNVP------VALISMHSCS-LDAKIKMNLEAQVVEKPAEINKKKP 83
G DG + C +C + +AL S+ S S LD K++ + P E P
Sbjct: 4 GNDGGPWQNCRKCQTSTTGDSVKTMALTSVDSSSILDVKLERPMTTDCF-APNEFLTTSP 62
Query: 84 AERKKPTSTE---------PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS 134
P + E P+ R RK+ D ++ +RP AF ++ D RKE + P
Sbjct: 63 RASPAPINNEEEQVDAVQKPKNVRKRKR-GDDDRVRRPMNAFMVWSKDARKELAKQDPSV 121
Query: 135 KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
++K+ GE WK M++EEK+PY++K+ L+A
Sbjct: 122 HNA-DLSKKLGELWKLMSEEEKRPYVEKSESLRA 154
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FF+F R + +E P + +AK+ GEKW M EEK PY +A
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 166 KLKEKYKK 173
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAG 145
++ T+TEP KR K D KP+ T+ LF+ R+E+K+ HP+ T +K+
Sbjct: 4 RRATTTEPAIKR--KMARDPKKPRGRLTSHALFVQTCREEHKKKHPEKVVSFTEFSKKCS 61
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E+WK M+ +EK + + + E K Y M
Sbjct: 62 ERWKTMSAKEKSKFEELSKEDKKRYESEM 90
>gi|324526583|gb|ADY48692.1| High mobility group protein 1.2, partial [Ascaris suum]
Length = 248
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR++K D N PKR +AFF F D R E ++ HP+ K V VA+E G WK ++DEE+
Sbjct: 128 KRVKK---DPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRYWKALSDEER 183
Query: 157 KPYLDKAAELKADYSKAM 174
Y KA E K Y++ M
Sbjct: 184 MVYERKALEDKERYAEEM 201
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FF+F R + +E P + +AK+ GEKW M EEK PY +A
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 166 KLKEKYKK 173
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAG 145
++ T+TEP KR K D KP+ T++ LF+ R+E+K+ HP+ T +K+
Sbjct: 4 RRATTTEPAIKR--KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCS 61
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E+W+ M+ +EK + + + E K Y M
Sbjct: 62 ERWETMSAKEKSKFEELSKEDKKRYESEM 90
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FF+F R + +E P + +AK+ GEKW M EEK PY +A
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 166 KLKEKYKK 173
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAG 145
++ T+TEP KR K D KP+ T++ LF+ R+E+K+ HP+ T +K+
Sbjct: 4 RRATTTEPAIKR--KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCS 61
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E+WK M+ +EK + + + E K Y M
Sbjct: 62 ERWKTMSAKEKSKFEELSKEDKKRYESEM 90
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
G+ W N ++K+PY KAA+LK Y K
Sbjct: 130 GQMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FF+F R + +E P + +AK+ GEKW M EEK PY +A
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 166 KLKEKYKK 173
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAG 145
++ T+TEP KR K D KP+ T++ LF+ R+E+K+ HP+ T +K+
Sbjct: 4 RRATTTEPAIKR--KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCS 61
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E+WK M+ +EK + + + E K Y M
Sbjct: 62 ERWKTMSAKEKSKFEELSKEDKKRYESEM 90
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FF+F R + +E P + +AK+ GEKW M EEK PY +A
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 166 KLKEKYKK 173
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAG 145
++ T+TEP KR K D KP+ T++ LF+ R+E+K+ HP+ T +K+
Sbjct: 4 RRATTTEPAIKR--KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCS 61
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E+WK M+ +EK + + + E K Y M
Sbjct: 62 ERWKTMSAKEKSKFEELSKEDKKRYESEM 90
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFF+F + R KE P + AK+ GE W + +EK PY KAA
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECPGI-SIGDTAKKLGELWSTQSSKEKAPYEAKAA 145
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 146 KLKEKYEK 153
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
NKP+ +++ F+ D R+E+K HP S G +K+ E+WK M+ +EK + + A
Sbjct: 1 NKPRGKTSSYAFFIADCREEHKRKHPGTSVGFAEFSKKCSERWKTMSAKEKAKFEELAKT 60
Query: 166 LKADYSKAM 174
K Y + M
Sbjct: 61 DKIRYDREM 69
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+ FF+F R + +E P + +AK+ GEKW M EEK PY +A
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAMGSEEKLPYEQQAD 165
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 166 KLKEKYKK 173
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAG 145
++ T+TEP KR K D KP+ T++ LF+ R+E+K+ HP+ T +K+
Sbjct: 4 RRATTTEPAIKR--KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCS 61
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ +EK + + + E K Y M
Sbjct: 62 EGWKTMSAKEKSKFEELSKEDKKRYESEM 90
>gi|388857581|emb|CCF48730.1| related to NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 253
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KRLR D + PKRPP+A+ LF ++ R+E ++ HP + V + E WK +TDE++
Sbjct: 166 KRLR----DPDAPKRPPSAYLLFQNEVRQEIRKKHPGMP-YSEVLGKVSEAWKALTDEQR 220
Query: 157 KPYLDKAAELKADYSK 172
+ Y DK E A +++
Sbjct: 221 RVYQDKTTENMATWNQ 236
>gi|366987315|ref|XP_003673424.1| hypothetical protein NCAS_0A04790 [Naumovozyma castellii CBS 4309]
gi|342299287|emb|CCC67037.1| hypothetical protein NCAS_0A04790 [Naumovozyma castellii CBS 4309]
Length = 555
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E E PD+K V ++K A
Sbjct: 323 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLEQFPDAK-VPELSKLASA 379
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD+EKKP+ + E + ++ K
Sbjct: 380 RWKELTDDEKKPFYE---EFRTNWEK 402
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK DSN PKRPP+AFFLF ++ + K HP + VAK+ GEKW N +K+PY
Sbjct: 85 KKKFKDSNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SLGDVAKKLGEKWNNTAAGDKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRP +AFF+F DFR + K P + VAK+ GEKW N+T E+K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPY 143
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P+ KR++ D N P RPPTA+ ++ ++ R E ++ + V VAK AGE+W+N+
Sbjct: 568 PKKKRVK----DPNAPSRPPTAYIMWFNEHRDEISKSIGNPTSVAEVAKAAGERWRNIDS 623
Query: 154 EEKKPYLDKAAELKADYSKAM 174
E K Y + ELK +Y M
Sbjct: 624 ETKAKYQARVDELKKNYESEM 644
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAM 174
KA E K +Y KAM
Sbjct: 598 RKAEEAKREYEKAM 611
>gi|57232750|ref|NP_660206.2| high mobility group protein B4 [Homo sapiens]
gi|387912835|sp|Q8WW32.2|HMGB4_HUMAN RecName: Full=High mobility group protein B4
gi|189065201|dbj|BAG34924.1| unnamed protein product [Homo sapiens]
gi|208968483|dbj|BAG74080.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D +P+RPP++F LF D + K +P+ V VAK G+ W TD EK PY + A
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK+ D KPK+P +AFFLF ++ R ++K V VAK AGE+WKNMT++ + PY
Sbjct: 265 KKEKDPLKPKQPLSAFFLFCNERRAAL---LAENKSVLEVAKIAGEEWKNMTEKRRGPYE 321
Query: 161 DKAAELKADYSKAMEG 176
+ A + + Y + ME
Sbjct: 322 EVAKKNREKYMQEMEA 337
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
+ D NKPK+P ++F LF + RK + P T A KWK + +EE++ + K
Sbjct: 392 NVDPNKPKKPASSFLLFSKETRKSLMDERPGINNSTLTAM-ISVKWKELNEEERQIWNSK 450
Query: 163 AAELKADYSKAME 175
AAE Y K +E
Sbjct: 451 AAEAMEAYKKELE 463
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
+K D N PKRPP+AFF+F +FR K+ P + AK+ G W T +K+P+
Sbjct: 89 RKKKDPNAPKRPPSAFFVFSAEFRPTVKQEFPGC-SIGQCAKKLGIMWGQQTPTQKQPFE 147
Query: 161 DKAAELKADYSKAM 174
+KA L+ Y K M
Sbjct: 148 EKALRLREKYDKDM 161
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKPK +A+ F+ R+E+K HP+ S +K+ E+W+ T +++ + D
Sbjct: 4 GDVNKPKGKTSAYAFFVQTCREEHKRKHPEQSVNFAEFSKQCSERWRASTATDRRRFEDM 63
Query: 163 AAELKADYSKAMEG 176
A K Y + M G
Sbjct: 64 AKNDKVRYERDMRG 77
>gi|388522281|gb|AFK49202.1| unknown [Lotus japonicus]
Length = 187
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 82/185 (44%), Gaps = 43/185 (23%)
Query: 8 NAPKPRKRVDAQSASTSSATLMRGRDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNL 67
+AP+ RKRV L+R DGSAF CE C +V VAL +H C + KM
Sbjct: 3 SAPRLRKRV---------FPLLRAPDGSAFQICELCEVSVAVALADLHHC----ETKM-- 47
Query: 68 EAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDF-RKE 126
++I K K + P EP+ + ++ D + ++ FM D K
Sbjct: 48 -------ASKIFKGKELMQHSPVKVEPKTEVKQEMQDDDPEEEQ-------FMKDHDNKN 93
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYS--KAMEGNGDYNEVE 184
Y EA D G EKWK+M+ + K PY A LK +Y +E + EV
Sbjct: 94 YIEA--DRMGF--------EKWKSMSKQVKLPYTFHAFALKNEYVDDLLLEAH-QIAEVS 142
Query: 185 DKADN 189
D+AD+
Sbjct: 143 DEADS 147
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKLKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
G+ W N +K+PY KAA+LK Y K
Sbjct: 130 GKMWNNTAANDKQPYEKKAAKLKEKYEK 157
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ ++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSCAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKVDKACYEREMK 76
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP VT ++K+AG
Sbjct: 526 RKKPLEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAG 576
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA E + +Y KAM
Sbjct: 577 EIWKGMSKEKKEEWDRKAEEARREYEKAM 605
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 94 PRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
PR K+ R KK D+ P+RP +A+ FM +FR+++K HP+ V+ V AGE W+++T
Sbjct: 6 PRVKKRRAKKPKDA--PRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLT 63
Query: 153 DEEKKPYLDKAAELKADYS 171
E+K Y +++ KA Y+
Sbjct: 64 PEQKAVYEEQSVGSKATYA 82
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + K+ D N PKRPP+AFF+F + R + K P + AK+
Sbjct: 72 EREMKTYIPPKGETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETPGL-SIGDTAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W T ++K P+ KAA+LK Y K
Sbjct: 131 GELWAEQTPKDKLPHEQKAAKLKEKYEK 158
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPD S + +K+ E+WK+M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKSMSAKEKGKFEDL 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKGDKARYEREM 75
>gi|409043529|gb|EKM53011.1| hypothetical protein PHACADRAFT_259183 [Phanerochaete carnosa
HHB-10118-sp]
Length = 283
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 27/132 (20%)
Query: 32 RDGSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91
RD SA AR E + + + ++D KI +N E+N+++ T+
Sbjct: 166 RDESAAARVEYAKRR------NEYFTTVDRKI-LN----------ELNRRR-------TA 201
Query: 92 TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNM 151
+P A RLR+K +S +P P A+F + FR+ Y +PD VAK AGE W+ M
Sbjct: 202 RDPNASRLRRKSKNSGQPAPPFVAWF--NETFRQRYATENPDLPA-RDVAKHAGEVWRGM 258
Query: 152 TDEEKKPYLDKA 163
+D +K+P++D+A
Sbjct: 259 SDGDKQPHVDRA 270
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 109 PKRPPTAFFLFMDDFR-----KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
PK P + LF + K E H V KEA W+ M++ EK+P+ D++
Sbjct: 117 PKMPAGPWLLFWKRYMAGRGIKSLDETH-------EVIKEASSTWRAMSEAEKQPFRDES 169
Query: 164 AELKADYSKAMEGNGDYNEVEDKADNEV 191
A + +Y+K N + V+ K NE+
Sbjct: 170 AAARVEYAK--RRNEYFTTVDRKILNEL 195
>gi|444732719|gb|ELW72994.1| High mobility group protein B1 [Tupaia chinensis]
Length = 289
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
D N PKRPP+AFFLF ++R + K HP V V K+ GE W N +EK+PY
Sbjct: 91 DPNSPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVTKKLGEMWNNTAADEKQPY 144
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
+ D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ EEK + D
Sbjct: 3 EGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKGKFED 62
Query: 162 KAAELKADYSKAM 174
A KA Y + M
Sbjct: 63 MAKADKARYEREM 75
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + K+ D N PKRPP+AFF+F + R + K P + AK+
Sbjct: 72 EREMKTYIPPKGETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETPGL-SIGDTAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W T ++K P+ KAA+LK Y K
Sbjct: 131 GELWAEQTPKDKLPHEQKAAKLKEKYEK 158
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPD S + +K+ E+WK+M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMSAKEKGKFEDL 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKGDKARYEREM 75
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRP + FFLF +F + K +P + V K+ GE W N+ D EK+PY+ K A+L
Sbjct: 27 NAPKRPLSGFFLFCSEFCPKIKSTNPGIS-IGDVVKKLGEMWNNLNDSEKQPYVTKVAKL 85
Query: 167 K 167
K
Sbjct: 86 K 86
>gi|380011419|ref|XP_003689803.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like
[Apis florea]
Length = 729
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRPPTAF ++++ R+ K +P VT +AK+ GE W+ + D K + KAA
Sbjct: 545 DANKPKRPPTAFMMWLNSARERIKAENP-GIAVTEIAKKGGEMWRELKD--KSEWEQKAA 601
Query: 165 ELKADYSKAM 174
+ K DYS +M
Sbjct: 602 KAKKDYSASM 611
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K PY KAA
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKAA 98
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 99 KLKEKYEK 106
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFEDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
G+ W N ++K+PY KAA+LK Y K
Sbjct: 130 GKMWSNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|18088957|gb|AAH21180.1| High-mobility group box 4 [Homo sapiens]
gi|312150396|gb|ADQ31710.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK G+ W TD EK PY + A
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
>gi|426328852|ref|XP_004065350.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4
[Gorilla gorilla gorilla]
Length = 186
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK G+ W TD EK PY + A
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFFLF DFR + K +P + AK+ GE W + + EEK+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCADFRPKIKSEYPGL-SIGDTAKKLGEMWNSSSAEEKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYDK 156
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFEDMA 63
Query: 164 AELKADYSKAME 175
+ K Y + M+
Sbjct: 64 KQDKLRYEREMK 75
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPP+AFFLF + R + K HP + AK+ GE W T ++K P+
Sbjct: 85 KKRKDPNAPKRPPSAFFLFCSEHRPKIKSDHPGL-SIGDTAKKLGEMWSLQTAKDKLPFE 143
Query: 161 DKAAELKADYSK 172
KA +LK Y K
Sbjct: 144 QKALKLKEKYDK 155
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+W+ M+ +EK + D
Sbjct: 4 GDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWRTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKGDKARYDREMK 76
>gi|110808604|gb|ABB22048.1| HMBG4 [Homo sapiens]
gi|119627858|gb|EAX07453.1| high-mobility group box 4 [Homo sapiens]
Length = 186
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK G+ W TD EK PY + A
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTATDLEKHPYEQRVA 147
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 148 LLRAKYFEELE 158
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KPK P +AFFLFM++ R + + K V V K GE+WKNMT++EK PY + A + K
Sbjct: 289 KPKHPVSAFFLFMNERRADL---VAEKKNVLEVGKITGEEWKNMTEKEKAPYEEMAKKNK 345
Query: 168 ADYSKAME 175
Y + ME
Sbjct: 346 NQYLQQME 353
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D NKPKRP ++F LF + RK E P T A KWK ++ EEK+ +
Sbjct: 410 KKIVDPNKPKRPASSFLLFSKEARKTISEERPGINNSTLNAL-ISVKWKEISHEEKQLWN 468
Query: 161 DKAAELKADYSKAMEGNGDYN 181
+KAA Y K ME +YN
Sbjct: 469 EKAAGAMEAYKKEME---EYN 486
>gi|296199401|ref|XP_002747150.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 209
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 14/149 (9%)
Query: 40 CEECNKNVPVALISMH----SCS-----LDAKIKMNLEAQVVEKPAEINKKKPAERKKPT 90
CEE K P A S CS + AK EA A ++ A R+ T
Sbjct: 24 CEEPKKKHPDASASFSEFSKKCSERWKTMSAKEGGKSEAMAKTDKAHYKREMKAGRRMKT 83
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT-GVAKEAGEKWK 149
P+ + +KK D N PKR P+AFFLF + + K HP G++ G K+ GE W
Sbjct: 84 YIPPKGE-TKKKFKDPNAPKRFPSAFFLFCSECYPKIKGEHP---GLSVGDVKKLGEMWS 139
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNG 178
N +K+PY KAA+L+ Y + + G
Sbjct: 140 NTAAGDKQPYEKKAAKLRKKYGRELAAYG 168
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++ + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +E+ + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEEGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|384490121|gb|EIE81343.1| hypothetical protein RO3G_06048 [Rhizopus delemar RA 99-880]
Length = 286
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 93 EPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
+PR ++ +KK +D++ PK P +A+ F R K+ P+SK V ++++ G KW++MT
Sbjct: 179 DPRGRK-KKKSTDTSLPKHPMSAYLHFAKTMRPIIKKNSPNSKLVE-ISQQIGLKWRSMT 236
Query: 153 DEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKA 187
+ E +P+++ A E KA Y++ M+ + +E D A
Sbjct: 237 ENEMRPWIEMANEDKARYAREMKDRVNCSEELDSA 271
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 101 KKDSDSNKPK---RPPTAFFLFMDDFRKEYKEAHPDSKGVTG--VAKEAGEKWKNMTDEE 155
K+ D+++PK RPP A+ LF D R++ +++G+T ++K + WK +++EE
Sbjct: 48 KQKYDNHQPKKVKRPPNAYLLFNRDMRRQM-----NNQGMTSGEISKNISQIWKQLSNEE 102
Query: 156 KKPYLDKAAELKADYSKA 173
+ Y + +ELK Y+ +
Sbjct: 103 RNKYFKEESELKQQYNSS 120
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
+KP +P +K K D N PKRP +A+ L+++ R++ K HP +T ++K+AGE
Sbjct: 527 RKPRKKQPESK----KGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGE 581
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAM 174
WK M+ E+K+ + KA + + DY KAM
Sbjct: 582 LWKAMSKEKKEEWDRKAEDARRDYEKAM 609
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + +AK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SMGDIAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N + K+PY KAA+LK Y K
Sbjct: 130 GELWNNTAADGKQPYEKKAAKLKEKYEK 157
>gi|444707796|gb|ELW48970.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK DSN PKRPP AF LF ++ + K HP ++ VAK+
Sbjct: 72 EREMKTYIPPKGET-KKKFKDSNAPKRPPLAFVLFCSEYCPKIKGEHPGL-SISDVAKKL 129
Query: 145 GEKWKNMTDEEKKPY 159
GE W N ++KKPY
Sbjct: 130 GEMWNNTAADDKKPY 144
>gi|148696675|gb|EDL28622.1| mCG11166 [Mus musculus]
Length = 160
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 43 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 101
Query: 167 KADYSK 172
K Y K
Sbjct: 102 KEKYEK 107
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 81
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
SN PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K+PY KAA+
Sbjct: 2 SNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 60
Query: 166 LKADYSK 172
LK Y K
Sbjct: 61 LKEKYEK 67
>gi|62660600|ref|XP_573625.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|392333089|ref|XP_003752789.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+LK
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 169 DYSK 172
Y K
Sbjct: 154 KYEK 157
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ + + F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|74153177|dbj|BAB27638.3| unnamed protein product [Mus musculus]
Length = 191
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
RKK + ++KPKRP +AFF+FM +FR+EY+ HP +K V V+ A
Sbjct: 280 RKKVTTNSKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAVSHLA 324
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK D NKPKR +A+ F D+R K +PD+ G V K G KWK + +EEKKPY
Sbjct: 22 RKGKKDPNKPKRALSAYMFFSQDWRDRIKAENPDA-GFGEVGKLLGAKWKELDEEEKKPY 80
Query: 160 LDKAAELKADYSKAMEGNGDYN 181
+++A++ D ++A E Y+
Sbjct: 81 VEQASK---DKTRAEEAKAAYD 99
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMT 152
P +KK D N PKR P+AFFLF ++ + K HP S GV VAK+ GE W N
Sbjct: 80 PHKGETKKKFKDPNAPKRSPSAFFLFCSEYCHKIKGEHPGLSIGV--VAKKLGEMWINTA 137
Query: 153 DEEKKPYLDKAAELKADYSK 172
+K+P KA +LK Y K
Sbjct: 138 VYDKQPCEKKATKLKEKYEK 157
>gi|353241760|emb|CCA73553.1| hypothetical protein PIIN_07506 [Piriformospora indica DSM 11827]
Length = 312
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+A+ L+ + RKE K+ +P + V E + W ++ EEKKPYLD
Sbjct: 114 DPNAPKRPPSAYLLYQNAIRKEIKDKNP-TMTYAEVLGEISKMWSGLSAEEKKPYLDATE 172
Query: 165 ELKADYSKA 173
K +Y K+
Sbjct: 173 IAKGEYEKS 181
>gi|427788863|gb|JAA59883.1| Putative nucleosome-binding factor spn pob3 subunit [Rhipicephalus
pulchellus]
Length = 734
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 86 RKKPTSTEPRAKRLR--KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
R T EP ++ R KK+ D+NKPKRPP+A+FL++ + R++ K+ +P +T V K
Sbjct: 536 RSAKTVKEPGMRKPRRPKKERDANKPKRPPSAYFLWLAENREKIKKDNP-GFSITDVTKR 594
Query: 144 AGEKWKNMTDEEK 156
AGE WK +TD+ K
Sbjct: 595 AGELWKEVTDKSK 607
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ ++ K+ D N PKRPP+AFFLF + R + K P + AK+
Sbjct: 72 EREMKTYIPPKGEKGGKRKKDPNAPKRPPSAFFLFCSENRPQIKNDTPGL-SIGDTAKKL 130
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W T ++K+P+ KAA+LK Y K
Sbjct: 131 GELWSEQTPKDKQPFEQKAAKLKEKYEK 158
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ + K + D A
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVSFAEFSKKCSERWKTMSAKGKGKFEDLA 64
Query: 164 AELKADYSKAME 175
K Y + M+
Sbjct: 65 KGDKVRYEREMK 76
>gi|444726553|gb|ELW67082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + ++K D N +R P+AFFLF ++R + K HP + VAK+
Sbjct: 21 EREMKTYIPPKGE-TKEKFKDPNASQRSPSAFFLFSSEYRPKIKGEHPGL-SIGDVAKKL 78
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N +K+PY KAA+LK Y K
Sbjct: 79 GEMWNNTAAGDKQPYGKKAAKLKEKYEK 106
>gi|6680229|ref|NP_032278.1| high mobility group protein B2 [Mus musculus]
gi|1708259|sp|P30681.3|HMGB2_MOUSE RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|609169|emb|CAA86727.1| high mobility group 2 protein [Mus musculus]
gi|12834643|dbj|BAB22988.1| unnamed protein product [Mus musculus]
gi|12842629|dbj|BAB25672.1| unnamed protein product [Mus musculus]
gi|12849395|dbj|BAB28323.1| unnamed protein product [Mus musculus]
gi|52789313|gb|AAH83108.1| High mobility group box 2 [Mus musculus]
gi|55777186|gb|AAH46759.1| High mobility group box 2 [Mus musculus]
gi|74179666|dbj|BAE22481.1| unnamed protein product [Mus musculus]
gi|74179668|dbj|BAE22482.1| unnamed protein product [Mus musculus]
gi|74226660|dbj|BAE26982.1| unnamed protein product [Mus musculus]
Length = 210
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|11527222|gb|AAG36939.1|AF267733_1 high mobility group protein B2 [Mus musculus]
gi|12805183|gb|AAH02050.1| High mobility group box 2 [Mus musculus]
gi|74150328|dbj|BAE32214.1| unnamed protein product [Mus musculus]
gi|148672860|gb|EDL04807.1| mCG4647 [Mus musculus]
Length = 210
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP AFFLF ++R + K +P + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEYPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK +G+ W T+ EK+PY ++AA
Sbjct: 89 DPQAPRRPPSSFLLFCKDHYAQLKRENPNW-SVVQVAKASGKMWSLSTNAEKQPYEERAA 147
Query: 165 ELKADYSKAME 175
L+A Y + ++
Sbjct: 148 LLRAKYQEELQ 158
>gi|94966915|ref|NP_001035652.1| high mobility group protein B4 [Bos taurus]
gi|119370723|sp|Q32L34.1|HMGB4_BOVIN RecName: Full=High mobility group protein B4
gi|81673105|gb|AAI09791.1| High-mobility group box 4 [Bos taurus]
gi|296488916|tpg|DAA31029.1| TPA: high mobility group protein B4 [Bos taurus]
Length = 194
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + P+RPP++F LF D + K +P S V VAK +G+ W TD +K+PY +AA
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAA 147
Query: 165 ELKADY 170
L+A Y
Sbjct: 148 LLRAKY 153
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPY---- 159
D KPK +++ F+ ++R ++KE P++ G +++ EKW++++ EK Y
Sbjct: 5 DQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64
Query: 160 -LDKA 163
LDKA
Sbjct: 65 KLDKA 69
>gi|390363101|ref|XP_781828.3| PREDICTED: FACT complex subunit SSRP1-like [Strongylocentrotus
purpuratus]
Length = 703
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
+S +PR K K++ D+N+PKRP T + L+++D R++ KE P VT + K+AGE W+
Sbjct: 551 SSDKPRKKV--KQEKDANRPKRPTTGYMLWLNDQREDIKEQFP-GISVTDLTKKAGEMWQ 607
Query: 150 NMTDEEKKPYLDKAAELKADYSKAM 174
+ D K + + A E K +Y AM
Sbjct: 608 KLGDTGKAKWNEIAGEKKKEYEIAM 632
>gi|186701221|gb|ACC91248.1| high mobility group HMG1/2 family protein [Arabidopsis halleri]
Length = 456
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK P +AF ++ ++ R +E DSK V VAK GE+WKN++D++K PY + A
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---DSKSVVEVAKITGEEWKNLSDKKKAPYEEVAK 307
Query: 165 ELKADYSKAME 175
+ K Y +AME
Sbjct: 308 KNKETYLQAME 318
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P +++FLF D RK E P + T A KWK + +EEK+ Y KAA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKRLIEERPGTNNSTVTAL-ISVKWKELGEEEKQVYNKKAA 433
Query: 165 ELKADYSKAMEGNGDYN 181
+L Y K +E YN
Sbjct: 434 KLMEAYKKEVEA---YN 447
>gi|328874899|gb|EGG23264.1| PHD zinc finger-containing protein [Dictyostelium fasciculatum]
Length = 758
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 96 AKRLRKKDSD-----SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
AK++R+K D KPK TAFF +++D R+ K A P+ + ++K G+KW+
Sbjct: 343 AKQMRQKQIDEIKEKITKPKTNVTAFFHYLNDNRETEKRAQPEL-SLADISKVLGQKWRV 401
Query: 151 MTDEEKKPYLDKAAE 165
+TD+EKKPY KAA+
Sbjct: 402 LTDDEKKPYHTKAAD 416
>gi|426215132|ref|XP_004001831.1| PREDICTED: high mobility group protein B4 [Ovis aries]
Length = 196
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + P+RPP++F LF D + K +P S V VAK +G+ W TD +K+PY +AA
Sbjct: 91 DPHAPRRPPSSFLLFCQDHYAQLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAA 149
Query: 165 ELKADY 170
L+A Y
Sbjct: 150 LLRAKY 155
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPY---- 159
D KPK +++ F+ ++R ++KE P++ G +++ EKW++++ EK Y
Sbjct: 7 DHLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 66
Query: 160 -LDKA 163
LDKA
Sbjct: 67 KLDKA 71
>gi|62362190|gb|AAX81532.1| amphiHMG1/2-like protein [Adineta ricciae]
Length = 142
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 94 PRAKRLRKKDS-DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
PRA KK S D N PKRP +AFFLF D R + K+ P S V ++KE G +WK ++
Sbjct: 2 PRAAGSSKKASKDPNAPKRPLSAFFLFSQDERPDIKKKSP-SLSVGDISKEIGSRWKKVS 60
Query: 153 DEEKKPYLDKAAELKADY 170
D+ +K Y KAA+ K Y
Sbjct: 61 DDVRKRYEQKAADEKKKY 78
>gi|363753154|ref|XP_003646793.1| hypothetical protein Ecym_5207 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890429|gb|AET39976.1| hypothetical protein Ecym_5207 [Eremothecium cymbalariae
DBVPG#7215]
Length = 168
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
++ +K+ N PK+P T + LF+ + K+ +P++ G V+K A +WK +TD +KK
Sbjct: 17 KVSRKELQKNAPKKPATVYSLFIKNNFALLKQQNPEA-GFAEVSKLANARWKGLTDLQKK 75
Query: 158 PYLDKAAELKADY 170
PY D+AA LK +Y
Sbjct: 76 PYYDEAARLKREY 88
>gi|351704050|gb|EHB06969.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 156
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
N PKRPP+AFFLF +R + K HP S G T AK++GE W + ++K+PY K A+
Sbjct: 43 NAPKRPPSAFFLFCSKYRPKIKSEHPGLSTGDT--AKKSGEMWSEQSAKDKQPYEQKGAK 100
Query: 166 LKADYSK 172
L Y K
Sbjct: 101 LMEKYEK 107
>gi|74185387|dbj|BAE30167.1| unnamed protein product [Mus musculus]
Length = 181
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP VT ++K+AG
Sbjct: 283 RKKPLEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAG 333
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 334 EIWKGMSKEKKEEWDRKAEDARREYEKAM 362
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAME----GNGD 179
KA + + +Y KAM+ G GD
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGD 620
>gi|221120410|ref|XP_002166637.1| PREDICTED: high mobility group-T protein-like [Hydra
magnipapillata]
gi|388594888|gb|AFK74879.1| transcription factor HMG-B3b [Hydra vulgaris]
Length = 177
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 40/72 (55%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK T+F +F + R + E T AKE G WK M+ EEKKPYLD AA
Sbjct: 7 DPNKPKGAKTSFIIFGEKTRADRLEKGETIPTQTEFAKELGNLWKEMSKEEKKPYLDLAA 66
Query: 165 ELKADYSKAMEG 176
E K + K MEG
Sbjct: 67 EDKKRFQKEMEG 78
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKR +A+F F R + K +P + GVT +AK GE+W+ +TD +KKPY + AA+
Sbjct: 106 NAPKRNVSAYFHFASAIRPKLKADNP-TLGVTELAKMIGERWQKLTDSDKKPYENLAAKD 164
Query: 167 KADYSKAMEGNGDYN 181
+ Y + + +YN
Sbjct: 165 RDRYQREL---SEYN 176
>gi|365991581|ref|XP_003672619.1| hypothetical protein NDAI_0K01850 [Naumovozyma dairenensis CBS 421]
gi|343771395|emb|CCD27376.1| hypothetical protein NDAI_0K01850 [Naumovozyma dairenensis CBS 421]
Length = 631
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R + PD+K V ++K A
Sbjct: 364 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNTLLQQFPDAK-VPELSKLASA 420
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD EKKPY D E + ++ K
Sbjct: 421 RWKELTDVEKKPYYD---EFRTNWDK 443
>gi|290991853|ref|XP_002678549.1| predicted protein [Naegleria gruberi]
gi|284092162|gb|EFC45805.1| predicted protein [Naegleria gruberi]
Length = 1091
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
K+P T+FFL+ D++R KE + VAKE G +WK +++EEK+ Y+DK EL +
Sbjct: 627 KKPKTSFFLYCDEYRDAVKEELGGKVAASEVAKELGARWKQLSEEEKQVYVDKHKELANE 686
Query: 170 YS 171
Y+
Sbjct: 687 YA 688
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFF F ++R + K HP + VAK+ GE W N + K+PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFFFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWSNTAADAKQPY 144
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 EKKAAKLKEKYEK 157
>gi|67968790|dbj|BAE00752.1| unnamed protein product [Macaca fascicularis]
Length = 191
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P S V VAK G+ W D EK PY +AA
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENP-SWSVVQVAKATGKMWSATADLEKHPYEQRAA 149
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 150 LLRAKYFEELE 160
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPY-----LD 161
KPK +++ F+ ++R E+KE P++ G +++ EKW++++ EK Y LD
Sbjct: 10 KPKANVSSYIHFLLNYRNEFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 69
Query: 162 KA 163
KA
Sbjct: 70 KA 71
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKRPP+ FFLF +FR + K +P + VAK GE+ N++D K+P + KAA
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKRLGERRNNLSDSGKQPSITKAA 300
Query: 165 ELK 167
+LK
Sbjct: 301 KLK 303
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K+PY
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAAKDKQPY 144
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ LF+ +E+K+ HPD S +G +K+ E+W M+ +EK +
Sbjct: 4 GDPKKPRGKMSSYALFVKTCWEEHKKKHPDASVNFSGFSKKCSERWNTMSAKEKGKFEGM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|223649078|gb|ACN11297.1| FACT complex subunit SSRP1 [Salmo salar]
Length = 711
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R KK D+N PKRP +++ L+++ R+ K +P +T ++K+AGE WK + E+K+
Sbjct: 532 RREKKQKDTNAPKRPMSSYMLWLNSSRERIKSENP-GISITEISKKAGEMWKQIGKEDKE 590
Query: 158 PYLDKAAELKADYSKAME-----GNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDE 210
+ KA E K +Y KAM+ G G A E + KA + EDK K G E
Sbjct: 591 EWDGKAEEAKKNYEKAMKEYRESGGGS----STPAKKESKKKAGGKKEDKKRKSGGGE 644
>gi|1083056|pir||B61611 nonhistone chromosomal protein HMG-2 - bovine (fragments)
Length = 186
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KA++L
Sbjct: 85 NAPKRPPSAFFLFSAEHRPKIKAEHPGL-SIGDTAKKLGEMWSQQSAKDKQPYEQKASKL 143
Query: 167 KADYSK 172
K Y K
Sbjct: 144 KEKYEK 149
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKP+ +++ F+ R+E+K+ HPD+ + E+WK M+ +EK + D A
Sbjct: 4 DPNKPRGKMSSYAFFVQTSREEHKKKHPDA------SVNFSERWKTMSAKEKSKFEDMAK 57
Query: 165 ELKADYSKAM 174
KA Y + M
Sbjct: 58 SDKARYDREM 67
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
K D N PK+P T +FLF D+ R+ K + K + V+K GE W +++DE+KKPY D
Sbjct: 8 KKKDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVSKVLGEMWNSLSDEQKKPYND 67
Query: 162 KAAELKADYSKAMEG 176
K Y K+++G
Sbjct: 68 K-------YKKSLDG 75
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RP T++ +F + RK+ E K VT VAK+ G WK M+DE+KKPY+ +A +LKA Y
Sbjct: 121 RPLTSYMIFSQEMRKKLLEEDSTLK-VTEVAKKVGALWKKMSDEQKKPYIAQAEKLKAAY 179
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K+PY
Sbjct: 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 56
>gi|332267288|ref|XP_003282615.1| PREDICTED: high mobility group protein B3-like, partial [Nomascus
leucogenys]
Length = 103
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+ FFLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA+LK Y K
Sbjct: 1 SGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEK 58
>gi|307205080|gb|EFN83551.1| High mobility group protein 20A [Harpegnathos saltator]
Length = 326
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
RAK+ +K D+ PK+P T +F F++D R++ + HP S + K +W + +
Sbjct: 67 RAKKRKKTPRDATAPKQPLTGYFRFLNDRREKARHEHP-SLSFADITKLLAAEWSTLPSD 125
Query: 155 EKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSE 214
+K+ YLD A + K Y++ + DY + E E + E + E+K E+ G+
Sbjct: 126 QKQQYLDAAEQDKERYNREI---SDYKQTE-AYRLFTEKQTEKQNENKKER-----NGTG 176
Query: 215 KDVAEKEVQQDEEN 228
+ + +VQQD++N
Sbjct: 177 VNTEQNDVQQDKDN 190
>gi|170036259|ref|XP_001845982.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167878859|gb|EDS42242.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 302
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R RKK D+N PK P T + +M++FR+E + +P V + K E+W N++DE KK
Sbjct: 38 RKRKKIKDANAPKHPLTGYVRYMNEFREERRLKNPALSAV-DITKLLAEEWSNLSDEVKK 96
Query: 158 PYLDKA 163
P+L+ A
Sbjct: 97 PFLEAA 102
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAME----GNGD 179
KA + + +Y KAM+ G GD
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGD 620
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 649 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 699
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 700 EIWKGMSKEKKEEWDRKAEDARREYEKAM 728
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 527 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 577
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 578 EIWKGMSKEKKEEWDRKAEDARREYEKAM 606
>gi|343427904|emb|CBQ71429.1| related to NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 252
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KRLR D + PKRPP+A+ LF ++ R+E ++ HP + V + E WK +TDE++
Sbjct: 165 KRLR----DPDAPKRPPSAYLLFQNEVRQEIRKKHPGMP-YSEVLGKVSEAWKALTDEQR 219
Query: 157 KPYLDKAAE 165
+ Y DK E
Sbjct: 220 RVYQDKTTE 228
>gi|302673176|ref|XP_003026275.1| hypothetical protein SCHCODRAFT_62473 [Schizophyllum commune H4-8]
gi|300099956|gb|EFI91372.1| hypothetical protein SCHCODRAFT_62473 [Schizophyllum commune H4-8]
Length = 81
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK+ D N PKRP T++ L+ +D R+ KE +P T + + E WK++ ++EK Y
Sbjct: 6 KKEKDPNAPKRPATSYILYQNDCRQSMKEKNPGLHN-TELLRYISETWKSLPEQEKSSYE 64
Query: 161 DKAAELKADYSKAM 174
KAA+LK DY A+
Sbjct: 65 AKAAKLKHDYEDAV 78
>gi|344241535|gb|EGV97638.1| High mobility group protein B1 [Cricetulus griseus]
gi|344241536|gb|EGV97639.1| High mobility group protein B1 [Cricetulus griseus]
Length = 154
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPP AFFLF ++ + + +P + VAK+ GE W N ++K+ Y
Sbjct: 35 KKFKDPNAPKRPPLAFFLFCCEYHPKNQRRNP-GLSIGDVAKKLGEMWNNTAADDKQTYE 93
Query: 161 DKAAELKADYSK 172
KAAELK Y K
Sbjct: 94 KKAAELKEKYKK 105
>gi|392563521|gb|EIW56700.1| HMG-box [Trametes versicolor FP-101664 SS1]
gi|392563525|gb|EIW56704.1| HMG-box [Trametes versicolor FP-101664 SS1]
gi|392563535|gb|EIW56714.1| HMG-box [Trametes versicolor FP-101664 SS1]
Length = 116
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D PKR +A+ F D+R+ K +PD+ G + K G KWK + D+EKKPYLD+AA
Sbjct: 28 DPKAPKRALSAYMFFSQDWRERIKAENPDA-GFGEIGKLLGAKWKELDDDEKKPYLDQAA 86
Query: 165 ELKADYSKAMEGNGDYN 181
AD S+A E Y+
Sbjct: 87 ---ADKSRAEEEKNAYD 100
>gi|392351997|ref|XP_003751090.1| PREDICTED: high mobility group protein B2-like, partial [Rattus
norvegicus]
Length = 154
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 167 K 167
K
Sbjct: 152 K 152
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 41 EECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K + ER+ T P+
Sbjct: 25 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K
Sbjct: 84 E-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 141
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 142 QPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 41 EECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K + ER+ T P+
Sbjct: 25 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K
Sbjct: 84 E-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 141
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 142 QPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|449706835|gb|EMD46595.1| high mobility group (HMG) box domain containing protein, partial
[Entamoeba histolytica KU27]
Length = 76
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
N+PKRPPT +F+++++ R KE HPD + T ++K A E+WK + +EEKK
Sbjct: 27 NRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWKALGEEEKK 76
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 41 EECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K + ER+ T P+
Sbjct: 25 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR-YEREMKTYIPPKG 83
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K
Sbjct: 84 E-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 141
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 142 QPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|392558113|gb|EIW51341.1| hypothetical protein TRAVEDRAFT_80819, partial [Trametes versicolor
FP-101664 SS1]
Length = 91
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D PKR +A+ F D+R+ K +PD+ G + K G KWK + D+EKKPYLD+AA
Sbjct: 19 DPKAPKRALSAYMFFSQDWRERIKAENPDA-GFGEIGKLLGAKWKELDDDEKKPYLDQAA 77
Query: 165 ELKADYSKAMEGNGDYN 181
AD S+A E Y+
Sbjct: 78 ---ADKSRAEEEKNAYD 91
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|609553|gb|AAA74556.1| HMG-T2 [Oncorhynchus mykiss]
Length = 215
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K+ D N PKRPP+AFF+F + R K +P G+ +AK+ G W T ++K+P+
Sbjct: 89 KRKKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKQPHE 147
Query: 161 DKAAELKADYSK 172
KAA+LK Y K
Sbjct: 148 AKAAKLKEKYEK 159
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +++ F+ R+E+K+ HP S + +K+ E+W+ M+ +EK + D A
Sbjct: 5 DPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDMA 64
Query: 164 AELKADYSKAMEG 176
K Y K M+G
Sbjct: 65 KGDKVRYDKDMKG 77
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K+ D N PKRPP+AFF+F + R K +P G+ +AK+ G W T ++K+P+
Sbjct: 89 KRKKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKQPHE 147
Query: 161 DKAAELKADYSK 172
KAA+LK Y K
Sbjct: 148 AKAAKLKEKYEK 159
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +++ F+ R+E+K+ HP S + +K+ E+W+ M+ +EK + D A
Sbjct: 5 DPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDMA 64
Query: 164 AELKADYSKAMEG 176
K Y K M+G
Sbjct: 65 KGDKVRYDKDMKG 77
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP VT ++K+AG
Sbjct: 532 RKKPLEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
Length = 104
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEA 144
K+ TST + KR+ +K D N PKR +A+ F ++ R + +E +P G++ V K
Sbjct: 3 KEKTSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENP---GISFGQVGKML 59
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185
GE+WK ++D +++PY +KAA AD + + YN +D
Sbjct: 60 GERWKALSDTDRRPYEEKAA---ADKKRYEDEKASYNAAQD 97
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ PR ++ +K+ D N PKRPP+AFF+F ++R + KE P + VAK+
Sbjct: 52 EREMKNYVPPRGEK-KKRFKDPNAPKRPPSAFFIFCAEYRPKVKEETPGL-SIGDVAKKL 109
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W + EEK+PY KAA+LK Y K
Sbjct: 110 GEMWNKTSAEEKQPYEKKAAKLKEKYEK 137
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPVEG--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ ++K+ + KA E K +Y KAM
Sbjct: 583 EIWKGMSKDKKEEWDRKAEEAKREYEKAM 611
>gi|50292849|ref|XP_448857.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528170|emb|CAG61827.1| unnamed protein product [Candida glabrata]
Length = 503
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 12/89 (13%)
Query: 87 KKPTSTEPRA---KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
KK +ST+ R K+L+K+ PKRP +A+FLF R E + PD+K V ++K
Sbjct: 286 KKLSSTQSRIEKRKQLKKQG-----PKRPSSAYFLFSMSIRNELLQQFPDAK-VPELSKL 339
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSK 172
A +W+ ++D+EKKPY D E + ++ K
Sbjct: 340 ASARWRELSDDEKKPYYD---EFRTNWEK 365
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F LF D + K +P+ V VAK +G+ W T EK+PY +AA
Sbjct: 91 DPYAPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKASGKMWSATTGAEKQPYEQRAA 149
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGD 209
L+A Y + +E Y + + KA+ + A+N+ K E + D
Sbjct: 150 LLRAKYQEDLE---IYRK-QRKANKGHQRSAKNQRRGKMESDKAD 190
>gi|320168039|gb|EFW44938.1| hypothetical protein CAOG_02944 [Capsaspora owczarzaki ATCC 30864]
Length = 193
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPP+A+ F + R E ++ +P S + ++ + GE W+ +TD+ K+PY
Sbjct: 94 KKSKDPNAPKRPPSAYICFANAVRPELRKTYP-SDTMPAISTKIGELWRQLTDDNKEPYN 152
Query: 161 DKAAELKADYSKAM 174
+A LK + M
Sbjct: 153 KQAEALKLKFQTEM 166
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K + D NKPK+P TAF F + R+ K +P K +T +A G+ W + + +K Y
Sbjct: 6 KKDEKDPNKPKKPTTAFMYFSNAMRERVKTQNPGLK-MTDIASVLGKLWGQLPEADKDKY 64
Query: 160 LDKAAELKADYSKAMEG 176
A K Y+KAM+G
Sbjct: 65 QTMANSDKERYAKAMDG 81
>gi|241632349|ref|XP_002410341.1| structure-specific recognition protein, putative [Ixodes
scapularis]
gi|215503398|gb|EEC12892.1| structure-specific recognition protein, putative [Ixodes
scapularis]
Length = 730
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
++P PR +R KK+ D NKPKR P+A+FL++ + R++ K +P G+T + K AGE
Sbjct: 534 REPGMGPPR-RRKPKKERDENKPKRAPSAYFLWLAENREQIKRDNP-GFGITDITKRAGE 591
Query: 147 KWKNMTDEEK 156
WK +TD K
Sbjct: 592 LWKTVTDRSK 601
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFFLF DFR + K +P + AK+ GE W + + EEK+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCADFRPKVKGDYP-GLSIGDTAKKLGEMWNSSSAEEKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYDK 156
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP VT ++K+AG
Sbjct: 532 RKKPLEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 534 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAG 584
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 585 EIWKGMSKEKKEEWDRKAEDARREYEKAM 613
>gi|148226156|ref|NP_001084164.1| FACT complex subunit SSRP1 [Xenopus laevis]
gi|82175412|sp|Q9W602.1|SSRP1_XENLA RecName: Full=FACT complex subunit SSRP1; AltName: Full=DNA
unwinding factor 87 kDa subunit; Short=DUF87; AltName:
Full=Facilitates chromatin transcription complex subunit
ssrp1; AltName: Full=Structure-specific recognition
protein 1
gi|4586285|dbj|BAA76333.1| DUF87 [Xenopus laevis]
Length = 693
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
PR K KK D PKRP +A+ L+++ R++ K +P +T ++K+AGE WKNM+
Sbjct: 526 PRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKNMSR 584
Query: 154 EEKKPYLDKAAELKADYSKAM 174
++K+ + +A E K DY KAM
Sbjct: 585 DKKEEWDRRAEEAKRDYEKAM 605
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 515 RKKPVEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 565
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 566 EIWKGMSKEKKEEWDRKAEDARREYEKAM 594
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P +++FLF + RK E HP T V KWK + +EEK+ Y KAA
Sbjct: 370 DPNKPKKPASSYFLFCKEARKSVLEEHPGINNST-VTAHISLKWKELGEEEKQVYNGKAA 428
Query: 165 ELKADYSKAMEGNGDYN 181
EL Y K +E +YN
Sbjct: 429 ELMEAYKKEVE---EYN 442
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK P +A+ ++ ++ R K ++K V VAK GE+WKN+++E+K PY A
Sbjct: 244 DPLKPKHPISAYLIYANERRAALK---GENKSVIEVAKMTGEEWKNLSEEQKAPYDQMAK 300
Query: 165 ELKADYSKAMEG 176
+ K Y + MEG
Sbjct: 301 KKKEIYLQEMEG 312
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + KK D N PKRPP+AFFLF ++ + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TEKKFKDPNAPKRPPSAFFLFYSEYCPQIKGEHP-GLSIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ + + F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSLYAFFVQTCREEHKKKHPDASINFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAM 174
A KA Y + M
Sbjct: 64 AKADKARYEREM 75
>gi|195977121|gb|ACG63669.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 227
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K H S G VAK+
Sbjct: 73 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHHLSTG--DVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAEL 166
GE W N +K+P KAA+L
Sbjct: 130 GEMWSNPAAGDKQPEEKKAAKL 151
>gi|195123073|ref|XP_002006034.1| GI20809 [Drosophila mojavensis]
gi|193911102|gb|EDW09969.1| GI20809 [Drosophila mojavensis]
Length = 388
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K +++ + + PK P ++ FM+D R++ + HP+ + K GE+W +TDE K
Sbjct: 52 KLTQRRINVAGAPKMPLNSYVRFMNDRREQLRREHPNRTALEHT-KMIGEEWHQLTDERK 110
Query: 157 KPYLDKAAELKADYSKAME 175
PYL+ AA+ KA Y + M
Sbjct: 111 APYLEAAAKDKALYQEQMH 129
>gi|307170751|gb|EFN62876.1| High mobility group protein 20A [Camponotus floridanus]
Length = 328
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
R K+ +K D+ PK+P + +FLF++D R++ + +P S T + K +W + +
Sbjct: 64 RTKKRKKTPRDATAPKQPLSGYFLFLNDRREKVRSENP-SLTFTEITKLLASEWSKLPGD 122
Query: 155 EKKPYLDKAAELKADYSKAMEGNGDYNEVED-KADNEVEDKAENEVEDKAEKEDGDEGGS 213
+K+ YLD A + K Y++ +Y + E + NE + + +N E+K E+ G+
Sbjct: 123 QKQQYLDAAEQDKERYNREF---SNYKQTEAYRLFNEKQSERQN--ENKKER-----NGT 172
Query: 214 EKDVAEKEVQQDEEN 228
+ +V + +VQQD++N
Sbjct: 173 DVNVEQNDVQQDKDN 187
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPMEV--------KKGRDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|312385331|gb|EFR29858.1| hypothetical protein AND_00899 [Anopheles darlingi]
Length = 174
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 69 AQVVEKPAEINKKKP-AERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEY 127
A + KPA +++P A++ +P+ R++ S+KPKRP +A+ L+++ R++
Sbjct: 26 ADLERKPATTPRRRPRAKQARPSDAIRRSRHSPNPMPGSSKPKRPLSAYMLWLNSAREQI 85
Query: 128 KEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
K+ +P K VT +AK+ GE W+ M D+ + + KAA++K +Y+K M+
Sbjct: 86 KKENPGIK-VTEIAKKGGELWRGMKDKSEWEF--KAAKMKDEYNKQMQ 130
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
ST AKR KKD NKPKR +A+ F+ D+R+ K +P++ V K G KW+
Sbjct: 12 STASDAKRRSKKD--PNKPKRALSAYMFFVQDYRERIKAENPEA-TFGDVGKLLGIKWRE 68
Query: 151 MTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M + EKKPY KA KAD +A N DY
Sbjct: 69 MNENEKKPYEAKA---KADKERADRENADY 95
>gi|154416727|ref|XP_001581385.1| HMG box family protein [Trichomonas vaginalis G3]
gi|121915612|gb|EAY20399.1| HMG box family protein [Trichomonas vaginalis G3]
Length = 186
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 89 PTSTEPRAKRLRKKDSDSN---KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
PT EP + + N KPKRPP A+ L+ + + + K HP G V+K G
Sbjct: 6 PTLEEPMRSLMPVQIQQQNSPPKPKRPPNAYNLYYIEMQPKAKAEHPLLGG-NEVSKLIG 64
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSK 172
++W MT+E+K+PY++KA E++ + +
Sbjct: 65 QQWGAMTEEQKRPYIEKANEIREQFRR 91
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPMEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKGMSKEKKEEWDRKAEDARREYEKAM 611
>gi|401406436|ref|XP_003882667.1| Zgc:123215, related [Neospora caninum Liverpool]
gi|325117083|emb|CBZ52635.1| Zgc:123215, related [Neospora caninum Liverpool]
Length = 98
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D N P+R +AF F + R E AHP+ K +T V K GE W +T EE+KP+ +KA
Sbjct: 21 DPNAPRRALSAFMFFAKEKRTEIVAAHPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 80
Query: 164 AELKADY 170
A+ KA Y
Sbjct: 81 AQDKARY 87
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
+ D NKPK+P +++FLF D RK E HP T V KW + +EEK+ Y K
Sbjct: 366 NVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNST-VTAHISLKWMELGEEEKQVYNSK 424
Query: 163 AAELKADYSKAMEGNGDYN 181
AAEL Y K +E +YN
Sbjct: 425 AAELMEAYKKEVE---EYN 440
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK+P +A+ ++ ++ R K ++K V VAK AGE+WKN+++E+K PY A
Sbjct: 242 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 165 ELKADYSKAMEG 176
+ K Y + MEG
Sbjct: 299 KNKEIYLQEMEG 310
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHP--DSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D + KRP T + L+ D E K+ +P D K + + G KWK ++ EEKKPY +K
Sbjct: 125 DCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNIL---GAKWKGISAEEKKPYEEK 181
>gi|403213858|emb|CCK68360.1| hypothetical protein KNAG_0A07060 [Kazachstania naganishii CBS
8797]
Length = 643
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 19/111 (17%)
Query: 87 KKPTSTEPRA---KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
KK ++T+ R K+L+K+ PKRP +A+FLF R + + +PD+K V ++K
Sbjct: 359 KKLSTTQSRIEKRKQLKKQG-----PKRPSSAYFLFSMSIRNDLLQQYPDAK-VPELSKL 412
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK 194
A +WK +TD++KKP+ D E + ++ K Y + D+ +N + K
Sbjct: 413 ASARWKELTDDQKKPFYD---EFRTNWDK-------YRVLRDEYENTLPPK 453
>gi|242006908|ref|XP_002424284.1| predicted protein [Pediculus humanus corporis]
gi|212507684|gb|EEB11546.1| predicted protein [Pediculus humanus corporis]
Length = 768
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
+SN PKRPP+A+F++M++ R + KE +P+ + +T +AK+AGE W+ + D+ K + +KA
Sbjct: 540 NSNAPKRPPSAYFIWMNENRDKLKEEYPNLQ-MTELAKKAGEVWRELKDKTK--WNEKAK 596
Query: 165 ELKADYSKAM 174
+ KA+Y A+
Sbjct: 597 KAKAEYEVAL 606
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAM 174
KA + + +Y KAM
Sbjct: 598 RKAEDARREYEKAM 611
>gi|313217945|emb|CBY41316.1| unnamed protein product [Oikopleura dioica]
gi|313245828|emb|CBY34818.1| unnamed protein product [Oikopleura dioica]
Length = 200
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP TAFFLF R++ K + V VAK+ GE WK ++ EEK+ + A
Sbjct: 92 DPNAPKRPATAFFLFSTANREKAKAQLEEGAKVGDVAKKLGEMWKLVSAEEKENFAKIAK 151
Query: 165 ELKADYSKAME 175
E KA Y KAME
Sbjct: 152 ESKAKYDKAME 162
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAM 174
KA + + +Y KAM
Sbjct: 598 RKAEDARREYEKAM 611
>gi|380021877|ref|XP_003694783.1| PREDICTED: high mobility group protein 20A-like [Apis florea]
Length = 329
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 79 NKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
N P T+T RAK+ +K D+ PK+P T +F F++D R++ + +P +
Sbjct: 53 NNVTPIIGSNTTNTTNRAKKRKKTPRDATAPKQPLTGYFRFLNDRREKVRNENP-TLSFA 111
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENE 198
+ K +W + ++K+ YLD A + K Y++ DY + E A +K +E
Sbjct: 112 EITKLLASEWSTLPADQKQQYLDAAEQDKERYNREF---SDYKQTE--AYRLFSEKQSSE 166
Query: 199 VEDKAEKEDGDEGGSEKDVAEKEVQQDEEN 228
+ +++KE G++ + + ++QQD++N
Sbjct: 167 KQQESKKE---RNGTDINSEQNDIQQDKDN 193
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAM 174
KA + + +Y KAM
Sbjct: 598 RKAEDARREYEKAM 611
>gi|444511434|gb|ELV09880.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++ E K +P ++ +AK+
Sbjct: 29 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYCPEIKGDYP-GLSISDIAKKL 86
Query: 145 GEKWKNMTDEEKKPY 159
GE W N + K+PY
Sbjct: 87 GEMWNNTAADGKQPY 101
>gi|46394418|gb|AAS91553.1| AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]
Length = 222
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R ++K D N PKR +AFF++ D R + + AHPD + V +AK G++WK ++D +K
Sbjct: 87 RRKRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQWKEISDSDKA 145
Query: 158 PYLDKAAELKADYSKAM 174
Y KA KA Y K +
Sbjct: 146 KYEKKAQTEKARYQKEL 162
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV-TGVAKEAGEKWKNMTDEEKKPY 159
D NKPK +A+ F+ + R+E+++ +P+ + V T +++ +WK M D+EKK +
Sbjct: 4 DKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKKRF 59
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFFLF DFR + K P + AK+ GE W + + EEK+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCADFRPKIKSESPGL-SIGDTAKKLGEMWNSSSAEEKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYDK 156
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFEDMA 63
Query: 164 AELKADYSKAME 175
+ K Y + M+
Sbjct: 64 KQDKVRYEREMK 75
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK T+ K+ + ++ D NKPK+P +++FLF D RK+ E P + T A
Sbjct: 351 KKKEKTDNLIKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTAL-ISL 409
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181
KWK +++EEK+ Y KAA+L Y K +E YN
Sbjct: 410 KWKELSEEEKQVYNGKAAKLMEAYKKEVEA---YN 441
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK P +AF ++ ++ R +E ++K V VAK GE+WKN++D++K PY A
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 165 ELKADYSKAME 175
+ K Y +AME
Sbjct: 308 KNKETYLQAME 318
>gi|349804477|gb|AEQ17711.1| putative high mobility group protein-1 [Hymenochirus curtipes]
Length = 143
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF DFR K HP + VAK+
Sbjct: 70 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSDFR--IKGEHPGLT-IGDVAKKL 125
Query: 145 GEKWKNMTDEEKKPYLDKA 163
GE W N D +K PY KA
Sbjct: 126 GEMWNNTVD-DKLPYERKA 143
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RK T + R + +KK D N P RP +A+FL+ ++ R++ ++ V VAK G
Sbjct: 106 RKDETKSSKRQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGG 165
Query: 146 EKWKNMTDEEKKPYLDKAAELKADY 170
E W+NM E K Y + ELK Y
Sbjct: 166 ELWRNMDSETKSTYQSRVDELKKKY 190
>gi|3600053|gb|AAC35540.1| contains similarity to HMG (high mobility group) box (Pfam:
HMG_box.hmm, scores: 70.67, 53.09 and 80.15)
[Arabidopsis thaliana]
Length = 401
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
+ D NKPK+P +++FLF D RK E HP T V KW + +EEK+ Y K
Sbjct: 321 NVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNST-VTAHISLKWMELGEEEKQVYNSK 379
Query: 163 AAELKADYSKAMEGNGDYN 181
AAEL Y K +E +YN
Sbjct: 380 AAELMEAYKKEVE---EYN 395
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK+P +A+ ++ ++ R K ++K V VAK AGE+WKN+++E+K PY K
Sbjct: 254 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKMAGEEWKNLSEEKKAPYDQKTK 310
Query: 165 E 165
E
Sbjct: 311 E 311
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHP--DSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D + KRP T + L+ D E K+ +P D K + + G KWK ++ EEKKPY +K
Sbjct: 137 DCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNIL---GAKWKGISAEEKKPYEEK 193
Query: 163 AAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDK 202
K Y + + E D+E + K E+ D+
Sbjct: 194 YQADKEAYLQVITKEKREREAMKLLDDEQKQKTAMELLDQ 233
>gi|119588737|gb|EAW68331.1| hCG1991922, isoform CRA_a [Homo sapiens]
gi|119588738|gb|EAW68332.1| hCG1991922, isoform CRA_a [Homo sapiens]
Length = 188
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFL+ ++ + K P VAK+ GE W N ++K+PY
Sbjct: 35 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGL-SFGDVAKKLGEMWNNTAADDKQPY 93
Query: 160 LDKAAELKADYSK 172
++A+LK Y K
Sbjct: 94 EKRSAKLKEKYEK 106
>gi|444313359|ref|XP_004177337.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
gi|387510376|emb|CCH57818.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
Length = 400
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
RA++L KD D N PKRP A+ LF ++ +++ K++ G V K E WKN+ ++
Sbjct: 162 RAQKL--KDRDPNLPKRPTNAYLLFCEETKEKIKQS-----GSADVTKALAEAWKNLDEQ 214
Query: 155 EKKPYLDKAAELKADYSKAME 175
E+KPY +E + Y + M+
Sbjct: 215 ERKPYYKLYSEDRLRYQREMQ 235
>gi|395526464|ref|XP_003765383.1| PREDICTED: high mobility group protein B4 [Sarcophilus harrisii]
Length = 207
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D PKRPP++FFLF + + K +P V VAK GE W ++++K+PY +KAA
Sbjct: 92 DPKAPKRPPSSFFLFSREHYTKIKSDNPHW-SVVQVAKLLGEMWSKKSEQDKQPYEEKAA 150
Query: 165 ELKADYSKAM 174
L+A Y + +
Sbjct: 151 RLRAKYHQEL 160
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKR P+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRTPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|448106088|ref|XP_004200660.1| Piso0_003256 [Millerozyma farinosa CBS 7064]
gi|448109217|ref|XP_004201291.1| Piso0_003256 [Millerozyma farinosa CBS 7064]
gi|359382082|emb|CCE80919.1| Piso0_003256 [Millerozyma farinosa CBS 7064]
gi|359382847|emb|CCE80154.1| Piso0_003256 [Millerozyma farinosa CBS 7064]
Length = 301
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
R +R+R D + PKRP A+ +F + R+ K D+ G ++K E WKN+ DE
Sbjct: 132 RLQRIR----DPDLPKRPTNAYLIFCEMERERIKNEIDDTSGTPDLSKSLTEAWKNLDDE 187
Query: 155 EKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEGGSE 214
++KPY + + Y + M YN+ + ++ED +NE K +K D E G E
Sbjct: 188 KRKPYYKLYEDDRDRYQREMTL---YNQRK-----QLEDDTKNESSPKRQKIDDSEPGVE 239
Query: 215 KDVAEKEVQQDEENLD 230
K +++EN++
Sbjct: 240 NSKDTKSELEEDENVN 255
>gi|340713595|ref|XP_003395326.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus terrestris]
Length = 735
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRPPTAF ++++ R+ K +P VT +AK+ GE W+ + D K + KAA
Sbjct: 545 DANKPKRPPTAFMIWLNSARERIKAENP-GIAVTEIAKKGGEMWRELKD--KSEWEQKAA 601
Query: 165 ELKADYSKAME------GNGD 179
+ K +Y+ +M+ G GD
Sbjct: 602 KAKKEYTASMKEYEASGGGGD 622
>gi|332025514|gb|EGI65677.1| FACT complex subunit Ssrp1 [Acromyrmex echinatior]
Length = 721
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 88 KPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEK 147
K S +PR +R KK+ D NKPKRPP+AF L++ R K +P +T +AK+ GE
Sbjct: 517 KTISEKPRKQRKSKKERDENKPKRPPSAFMLWLSSARDSIKADNP-GLSITDIAKKGGEM 575
Query: 148 WKNMTD 153
W+ + D
Sbjct: 576 WRELKD 581
>gi|196119855|gb|ACG69451.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 155
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKR P+AFFLF ++R + K HP + VAK+ GE W N ++K+P
Sbjct: 35 KKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPE 93
Query: 160 LDKAAEL 166
KAA+L
Sbjct: 94 EKKAAKL 100
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 81 KKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGV 140
K P ER+ T R +KK D N PKRP +AFFLF ++ + K HP + V
Sbjct: 110 KAPYEREMKTYIL-RKGETKKKFKDPNAPKRPLSAFFLFCSEYCPKSKGEHPGL-SIGEV 167
Query: 141 AKEAGEKWKNMTDEEKKPYLDKAAELK 167
AK+ G W N ++K+PY KAA+LK
Sbjct: 168 AKKLGVMWNNTAADDKQPYEKKAAKLK 194
>gi|449681405|ref|XP_002159252.2| PREDICTED: FACT complex subunit SSRP1-like [Hydra magnipapillata]
Length = 774
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 79 NKKKPAERKKPTSTEPRAKR-------LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
NKK+ +E P EP+ KR +KK D N PKRP +AF L+M++ R++ K +
Sbjct: 513 NKKRKSE---PKKNEPKIKRPKKEEGSSKKKKKDENAPKRPMSAFMLYMNEVREKIKADN 569
Query: 132 PDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK-----ADYSKAMEGNG 178
P T +AK+ GE+WK +TD+ K + K A+ K A YSK ++ G
Sbjct: 570 P-GIAFTDIAKKGGEQWKTLTDKTKWENMAKEAKNKYTIDFAAYSKTIKDGG 620
>gi|323454892|gb|EGB10761.1| hypothetical protein AURANDRAFT_16132, partial [Aureococcus
anophagefferens]
Length = 174
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
S PR KR R + D N PKR +AF LF + R ++AHPD V ++K G WK+
Sbjct: 89 SRRPRVKRHRTR-KDPNAPKRGASAFLLFANANRTALRDAHPDKHNVE-ISKMLGAIWKS 146
Query: 151 MTDEEKKPYLDKAAELKADY 170
+ +KPYLD A K+ +
Sbjct: 147 CDESTRKPYLDAEAAAKSKF 166
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEE 155
KR K+ D N PKR +A+ F+ D+R + K HPD S G TG K GEKWK M+ E
Sbjct: 19 KRAPKEKKDPNAPKRGLSAYMFFVQDYRPKIKNDHPDVSFGETG--KLLGEKWKAMSAAE 76
Query: 156 KKPYLDKAAE 165
KKP+ D AA+
Sbjct: 77 KKPFEDLAAK 86
>gi|343427561|emb|CBQ71088.1| probable NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 99
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
K TST+ KR K D PKRP +A+ F D R+ K A+P++ G + V + G
Sbjct: 9 KSSTSTQ---KRTTKSKKDPAAPKRPLSAYMFFSQDHRERVKTANPEA-GFSDVGRLLGA 64
Query: 147 KWKNMTDEEKKPYLDKA 163
KW M+D EKKPY D A
Sbjct: 65 KWNEMSDAEKKPYNDMA 81
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKR P+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|312190937|gb|ADQ43367.1| HMGBb [Litopenaeus vannamei]
Length = 206
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
PR R R+ D N PKR +AFF F +D R + + A+PD GV VAK+ G W N
Sbjct: 86 PRVSRKRRNRKDPNAPKRALSAFFWFCNDERAKVRAANPDM-GVGDVAKQLGAAWSNTPP 144
Query: 154 EEKKPYLDKAAELKADYSKAM----EGN 177
E K Y AA K Y K M EGN
Sbjct: 145 EAKAKYEALAASDKERYEKEMKAFKEGN 172
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMT 152
PRAK + +KP+ +A+ F+ R+E+K+ HPD V +++ E+WK MT
Sbjct: 2 PRAKLV------DSKPRGRMSAYAFFVQTCREEHKKKHPDENVVFSEFSRKCAERWKTMT 55
Query: 153 DEEKKPYLDKAAELKADYSKAMEG 176
D+EK + D A + KA Y M+G
Sbjct: 56 DKEKDRFYDMADKDKARYDTEMKG 79
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKR P+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 135
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
TS P+ + +KK D N P RPP+AFFLF ++ E K HP + VAK+ GE W
Sbjct: 3 TSIPPKGET-KKKFKDPNAPNRPPSAFFLFCSEYHPEIKGEHP-GLSIGDVAKKLGEMWN 60
Query: 150 NMTDEEKKPYLDKAAELKADYSK 172
++K+PY KAA+LK Y K
Sbjct: 61 YTAVDDKQPYEKKAAKLKEKYEK 83
>gi|403172857|ref|XP_003331993.2| hypothetical protein PGTG_13945 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170025|gb|EFP87574.2| hypothetical protein PGTG_13945 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 490
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 81 KKPAERKKPTSTEPRAKRLR-KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
++P P + P K+ R K++ D N PKRP +A+ LF + R+E + A+P +
Sbjct: 192 RQPTTIPTPPGSIPGGKKKRVKRERDPNAPKRPASAYILFQNAVRQEMRAANPTAD-YKE 250
Query: 140 VAKEAGEKWKNMTDEEKKPY 159
+A++ G++WKN+++E K+P+
Sbjct: 251 LARQIGDRWKNLSEEAKRPW 270
>gi|402226001|gb|EJU06061.1| HMG-box, partial [Dacryopinax sp. DJM-731 SS1]
Length = 227
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR KK+ D N PKRP +A+ L+ +D R E+ E S +AK E W +++ EK
Sbjct: 2 KRRMKKEKDPNAPKRPASAYLLYQNDKRAEFTEKFKGSPYHEMLAK-ISESWGKLSEVEK 60
Query: 157 KPYLDKAAELKADY 170
PYL A+LK DY
Sbjct: 61 SPYLSAQAKLKEDY 74
>gi|429855216|gb|ELA30184.1| hmg box protein [Colletotrichum gloeosporioides Nara gc5]
Length = 468
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 49 VALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNK 108
V+L+S S++ + E Q ++P NK+ P + K+ K R D N
Sbjct: 67 VSLVSPTRASVE---EPKTETQRPDQPRPENKEGPVQAKR--------KYRRHPKPDENA 115
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
P+RPP+A+ LF + R E K + T +AK GE W+N+T EK+PY A + K
Sbjct: 116 PERPPSAYVLFSNKMRDELKG---RNLTFTEIAKLVGEHWQNLTPAEKEPYETSALKAKE 172
Query: 169 DY 170
Y
Sbjct: 173 KY 174
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 47 VPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDS 106
+P + +S S A + + A+ + K A+ + K K TST+ KR K D
Sbjct: 1 MPSSFLSTQSSF--ASVLIVSPARAIVKMAKADTKT----KSSTSTQ---KRTTKAKKDP 51
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+ PKRP +A+ F D R+ K A+P++ G V + G KWK M++ EKKPY D A
Sbjct: 52 DAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGAKWKEMSEAEKKPYNDMA 107
>gi|443724197|gb|ELU12309.1| hypothetical protein CAPTEDRAFT_56147, partial [Capitella teleta]
Length = 196
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R K D N+PKRP +A+FL++ FR K+ P +K + + AGE WK +T+ EK PY
Sbjct: 90 RYKGRDKNRPKRPQSAYFLWLAGFRTRMKDKIPVNKELL---RAAGEHWKRLTEVEKAPY 146
Query: 160 LDKAAELKADYSKAM 174
A + Y +AM
Sbjct: 147 EQMAEGERRKYEEAM 161
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RKK+ D N+PKRP +A+F ++ R E ++ V KE + W+ MT E++K +
Sbjct: 14 RKKNKDPNRPKRPTSAYFFYVAHCRAECEKRGERITRVAQWTKEISQVWREMTPEDRKGF 73
Query: 160 LDKAAELKADYSKAM 174
KA KA Y + M
Sbjct: 74 DAKAVVDKARYEEQM 88
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R + + P VT V+K+AGE WK M+ E+K+ +
Sbjct: 537 KKGKDPNAPKRPLSAYMLWLNANRDKIRSESP-GMSVTDVSKKAGELWKAMSKEKKEEWD 595
Query: 161 DKAAELKADYSKAMEGNGDYNE 182
KA + K DY KAM+ +YNE
Sbjct: 596 RKAEDAKRDYEKAMK---EYNE 614
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF + R + + H + AK+ GE W + ++++PY KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIRSEH-SGLSIGDTAKKLGEMWSEQSAKDEQPYEQKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D N+P+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNEPRGKMSSYAFFVQTCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKACYDREM 75
>gi|194068385|dbj|BAG55013.1| high mobility group 1 protein [Saccostrea kegaki]
Length = 201
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
S++ KPKRP +A+F F+ DFR++ K + D K + K AGE W+N+ D EKKP+ A
Sbjct: 93 SEAGKPKRPQSAYFCFLADFREKMKGKNIDHKEII---KMAGEAWRNLDDNEKKPFEKLA 149
Query: 164 AELKADYSKAM 174
+ + Y +A+
Sbjct: 150 QKEQEKYEQAL 160
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
++K D NKPKR +A+F F+ R++ K + + KE+ KW MTD++K+P+
Sbjct: 10 KRKAKDPNKPKRSTSAYFYFLGKMREDAKSSGKPITKIAEFTKESSAKWAKMTDKDKEPF 69
Query: 160 LDKAAELKADYSKAM 174
KAA K Y M
Sbjct: 70 NKKAAADKKRYDAEM 84
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+ Y KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQHYEKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 161 DKAAELKADYSKAM 174
KA + + +Y KAM
Sbjct: 598 RKAEDARREYEKAM 611
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K DSNKPKRP TAF L+++D R++ K +P K VT +AK+ GE WK + D+ K
Sbjct: 553 KKKDSNKPKRPTTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKELKDKSK 606
>gi|66523545|ref|XP_625193.1| PREDICTED: high mobility group protein 20A-like isoform 1 [Apis
mellifera]
Length = 329
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 9/150 (6%)
Query: 79 NKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
N P T+T RAK+ +K D+ PK+P T +F F++D R++ + +P +
Sbjct: 53 NNVTPIIGSNNTNTTNRAKKRKKTPRDATAPKQPLTGYFRFLNDRREKVRSENP-TLSFA 111
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENE 198
+ K +W + ++K+ YLD A + K Y++ DY + E A +K +E
Sbjct: 112 EITKLLASEWSTLPADQKQQYLDAAEQDKERYNREF---SDYKQTE--AYRLFSEKQSSE 166
Query: 199 VEDKAEKEDGDEGGSEKDVAEKEVQQDEEN 228
+ +++KE G++ + + ++QQD++N
Sbjct: 167 KQQESKKE---RNGTDINSEQNDIQQDKDN 193
>gi|395856570|ref|XP_003800699.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 161
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKR P+AFFLF ++R + K HP + VAK+ GE W N ++K+P
Sbjct: 35 KKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPE 93
Query: 160 LDKAAEL 166
KAA+L
Sbjct: 94 EKKAAKL 100
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFLF ++ + K HP + V K+ GE W N +EK+PY
Sbjct: 74 KKKFKDPNTPKRPPSAFFLFCSEYSPKIKGEHPGLP-IGDVTKKLGEMWNNTGADEKQPY 132
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 133 EKKAAKLKEKYEK 145
>gi|443895134|dbj|GAC72480.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 99
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
K TST+ KR K D PKRP +A+ F D R+ K+A+P++ G V + G
Sbjct: 9 KSSTSTQ---KRTTKSKKDPAAPKRPLSAYMFFSQDHRERVKQANPEA-GFGDVGRLLGA 64
Query: 147 KWKNMTDEEKKPYLDKA 163
KWK M++ EKKPY D A
Sbjct: 65 KWKEMSEAEKKPYNDMA 81
>gi|350409390|ref|XP_003488719.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus impatiens]
Length = 736
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+NKPKRPPTAF ++++ R+ K +P VT +AK+ GE W+ + D K + KAA
Sbjct: 545 DANKPKRPPTAFMIWLNSARERIKAENP-GIAVTEIAKKGGEMWRELKD--KSEWEQKAA 601
Query: 165 ELKADYSKAM 174
+ K +Y+ +M
Sbjct: 602 KAKKEYTASM 611
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKR P+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|27466905|gb|AAO12859.1| high mobility group protein [Branchiostoma belcheri tsingtauense]
Length = 164
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R ++K D N PKR +AFF++ D R + + AHPD + V +AK G++WK ++D +K
Sbjct: 87 RRKRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQWKEISDSDKA 145
Query: 158 PYLDKAAELKADYSKAM 174
Y KA +A Y K +
Sbjct: 146 KYEKKAQTERARYQKEL 162
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV-TGVAKEAGEKWKNMTDEEKKPY 159
D NKPK +A+ F+ + R+E+++ +P+ + V T +++ +WK M D+EKK +
Sbjct: 4 DKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKKRF 59
>gi|170591488|ref|XP_001900502.1| High mobility group protein 1.2 [Brugia malayi]
gi|158592114|gb|EDP30716.1| High mobility group protein 1.2, putative [Brugia malayi]
Length = 235
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR++K D N PKR +AFF F D R E ++ HP+ K V VA+E G WK + +EE+
Sbjct: 106 KRVKK---DPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEEER 161
Query: 157 KPYLDKAAELKADYSKAM 174
Y KA E K Y++ M
Sbjct: 162 AVYERKALEDKERYAEEM 179
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEE 155
+R+R+ + K P FF+ M +E+K+ +P+ + VT ++K+ EKWK M+D+E
Sbjct: 17 RRMRESAKPPVRGKTSPYGFFVKMC--YEEHKKKYPNENVQVTEISKKCSEKWKTMSDDE 74
Query: 156 KKPYLDKA 163
K+ + + A
Sbjct: 75 KRRFFELA 82
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 41 EECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96
EE K P A ++ CS K E E A+ +K + ER+ T P+
Sbjct: 39 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKVR-YEREMKTYIPPKG 97
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
+ +KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K
Sbjct: 98 E-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 155
Query: 157 KPYLDKAAELKADYSK 172
+PY KAA+LK Y K
Sbjct: 156 QPYEKKAAKLKEKYEK 171
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEE 155
K ++ D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +E
Sbjct: 11 KVIKMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKE 70
Query: 156 KKPYLDKAAELKADYSKAME 175
K + D A K Y + M+
Sbjct: 71 KGKFEDMAKADKVRYEREMK 90
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKR P+AFFLF +R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
>gi|397631195|gb|EJK70063.1| hypothetical protein THAOC_08612 [Thalassiosira oceanica]
Length = 827
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 80 KKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG 139
+KKP++++K EP ++ KK D N PK P +A+ F R E KEA+PD+ G
Sbjct: 575 RKKPSKKRK---AEPSKQK--KKKRDPNAPKAPKSAYVFFTSAKRSEIKEANPDA-GFGD 628
Query: 140 VAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
++K G+ +K ++D EK+PY + A + KA Y + ME
Sbjct: 629 ISKLLGKAYKELSDAEKEPYDEMARKDKARYKREME 664
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK--GVTGV------AKEAGEKWKNMTDEEK 156
D N PK+P AF L+ + R++ KE +PD K +T +KE G K++ + +EEK
Sbjct: 695 DPNAPKKPMNAFMLYSNSIRQKIKEENPDMKVGDITYADPFFLQSKECGIKYRALNEEEK 754
Query: 157 KPYLDKAAELKADY 170
K + KA K Y
Sbjct: 755 KKWTAKADAAKEKY 768
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RKKP KK D N PKRP +A+ L+++ R++ K HP +T ++K+AG
Sbjct: 532 RKKPMEV--------KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAG 582
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAM 174
E WK M+ E+K+ + KA + + +Y KAM
Sbjct: 583 EIWKAMSKEKKEEWDRKAEDARREYEKAM 611
>gi|297303892|ref|XP_002806292.1| PREDICTED: high mobility group-T protein-like [Macaca mulatta]
Length = 159
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ P+A+ + K D N PKRPP AFF+F + + KE HP V+ VAK+
Sbjct: 37 EREMKIYIPPKAET-KMKFKDPNAPKRPPLAFFMFSSEDCPKIKE-HP-GLSVSDVAKKL 93
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178
GE W +++K PY KA +LK Y K + G
Sbjct: 94 GEMWNYTAEDDKHPYEKKAVKLKEKYEKDIAAFG 127
>gi|384500858|gb|EIE91349.1| hypothetical protein RO3G_16060 [Rhizopus delemar RA 99-880]
Length = 316
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K R D+N P +PP+A+ +F +D R E K+ ++ T +AK G++WK+++ EEK
Sbjct: 158 KYHRHPKPDTNAPVKPPSAYVMFSNDIRAELKQ---QNRSFTDLAKIIGDRWKSISAEEK 214
Query: 157 KPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENE 198
+ Y KA + + Y K +E + + + KAENE
Sbjct: 215 ELYETKALKAREKYLKEIEEYQKTDSYKRYQQYLFDFKAENE 256
>gi|167388437|ref|XP_001738566.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898168|gb|EDR25112.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 395
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P A+ LF + +YK+ PD K ++ + K+ G +WK + +E+KK Y+D+
Sbjct: 104 DENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKYIDQYY 162
Query: 165 ELKADY 170
KA+Y
Sbjct: 163 ASKAEY 168
>gi|27450225|gb|AAO14565.1|AF462604_2 HMG-L6 [Mus musculus]
Length = 199
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 88 KPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEK 147
K T P +KK D N PKRP +AFFLF ++R + K P + VAK+ GE
Sbjct: 83 KTTFHHPPKAETKKKFKDRNAPKRPSSAFFLFCSEYRPKIKGESPGL-SIGDVAKKLGEM 141
Query: 148 WKNMTDEEKKPYLDKAAELKADYSK 172
W N ++K+ Y +KAA+LK Y K
Sbjct: 142 WNNTAADDKQLY-EKAAKLKEKYKK 165
>gi|71024155|ref|XP_762307.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
gi|46101812|gb|EAK87045.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
Length = 534
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR K+ D + PKRPP+A+ LF ++ R+E ++ HP + V + E WK +TD+++
Sbjct: 285 KRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMP-YSEVLGKVSEAWKALTDDQR 343
Query: 157 KPYLDKAAELKADYSK 172
+ Y DK E A +++
Sbjct: 344 RVYQDKTTENMATWNQ 359
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 89 PTSTEPRAK---RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
P + EP+ K + KK+ D +KPK+P + + + ++ R++ K+ +P+ K +T ++K G
Sbjct: 3 PKNKEPKTKENTKRGKKEVDPDKPKKPLSGYMRYCNEQREQVKKENPELK-LTEISKVLG 61
Query: 146 EKWKNMTDEEKKPYLDKAAELKADYSKAME 175
EKWK +++EEKKPY D K Y ME
Sbjct: 62 EKWKELSEEEKKPYQDAYEADKEKYDLQME 91
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD--SKGVTGVAKEAGEKWKNMTDEEKKP 158
KK++D NKPKRP +++ +F +D R+E K +PD +K +T + G+ WK + +EEK+
Sbjct: 101 KKNADPNKPKRPLSSYIIFSNDKREEVKRKNPDMSNKEITTL---LGKMWKELPEEEKQE 157
Query: 159 YLDKAAELKADYSKAMEGNGDY 180
Y + AE K Y + M G+Y
Sbjct: 158 YEKQHAEEKKAYEEKM---GEY 176
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK+ D N PKRP +AFF F +D R ++ PD+ V VAKE G +W ++ D+ K Y
Sbjct: 87 RKRTKDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNDVGDDTKSKY 145
Query: 160 LDKAAELKADYSKAM 174
AA+ KA Y K +
Sbjct: 146 EGLAAKDKARYEKEL 160
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + V K+
Sbjct: 72 EREMKTYIPPK-RETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVGKKP 129
Query: 145 GEKWKNMTDEEKKPY 159
GE W + ++K PY
Sbjct: 130 GEMWNDTAADDKHPY 144
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M E+K+ +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMPKEKKEEWD 597
Query: 161 DKAAELKADYSKAM 174
KA + + +Y KAM
Sbjct: 598 HKAEDARREYEKAM 611
>gi|260828085|ref|XP_002608994.1| hypothetical protein BRAFLDRAFT_124005 [Branchiostoma floridae]
gi|229294348|gb|EEN65004.1| hypothetical protein BRAFLDRAFT_124005 [Branchiostoma floridae]
Length = 410
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
+IN+ E KK P+ K+ +K+ DSN PK P T + L++ + R++ K HP+
Sbjct: 112 QINQPTNEEPKKRKGGWPKGKKRKKETRDSNAPKAPVTGYVLYLTEQREKLKVEHPELP- 170
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKA 163
T + + G +W ++ E+K+ YLD A
Sbjct: 171 FTEMTRLLGSRWSALSQEDKQKYLDAA 197
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K+ D N PKRPP+AFF+F + R K +P G+ +AK+ G W T ++K P+
Sbjct: 89 KRKKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKLPHE 147
Query: 161 DKAAELKADYSK 172
KAA+LK Y K
Sbjct: 148 AKAAKLKEKYEK 159
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +++ F+ R+E+K+ HP S + +K+ E+W+ M+ +EK + D A
Sbjct: 5 DPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDMA 64
Query: 164 AELKADYSKAMEG 176
K Y K M+G
Sbjct: 65 KGDKVRYDKDMKG 77
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK+ D N PKRP +AFF F +D R ++ PD+ V VAKE G +W ++ D+ K Y
Sbjct: 87 RKRTKDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNDVGDDTKSKY 145
Query: 160 LDKAAELKADYSKAM 174
AA+ KA Y K +
Sbjct: 146 EGLAAKDKARYEKEL 160
>gi|392876622|gb|AFM87143.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDSSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|407035464|gb|EKE37713.1| HMG (high mobility group) box domain containing protein [Entamoeba
nuttalli P19]
Length = 369
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P A+ LF + +YK+ PD K ++ + K+ G +WK + +E+KK Y+D+
Sbjct: 103 DENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKYIDQYY 161
Query: 165 ELKADY 170
KA+Y
Sbjct: 162 ASKAEY 167
>gi|260806967|ref|XP_002598355.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
Length = 223
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R ++K D N PKR +AFF++ D R + + AHPD + V +AK G +WK ++D +K
Sbjct: 88 RRKRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGEIAKILGRQWKEISDSDKA 146
Query: 158 PYLDKAAELKADYSKAM 174
Y KA KA Y K +
Sbjct: 147 KYEKKAQTEKARYQKEL 163
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV-TGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +A+ F+ + RKE+++ +PD + V T +K+ E+WK M D EKK + D A
Sbjct: 5 DKNKPKGKMSAYACFVQECRKEHEKKYPDKQVVFTEFSKKCAERWKTMNDGEKKRFQDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 ETDKRRYEREM 75
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F DFR + K P + VAK+ GE W E+K+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKVKGETPGPT-IGDVAKKLGEMWNGTCAEDKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|148669729|gb|EDL01676.1| mCG1025710 [Mus musculus]
Length = 178
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 88 KPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEK 147
K T P +KK D N PKRP +AFFLF ++R + K P + VAK+ GE
Sbjct: 83 KTTFHHPPKAETKKKFKDRNAPKRPSSAFFLFCSEYRPKIKGESP-GLSIGDVAKKLGEM 141
Query: 148 WKNMTDEEKKPYLDKAAELKADYSK 172
W N ++K+ Y +KAA+LK Y K
Sbjct: 142 WNNTAADDKQLY-EKAAKLKEKYKK 165
>gi|729729|sp|P40622.1|HMG1A_CHITE RecName: Full=Mobility group protein 1A
gi|156587|gb|AAA21712.1| high mobility group protein 1a [Chironomus tentans]
Length = 114
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KPKRP +A+ L+++ R+ K+ +PD K VT +AK+ GE W+ M D K + KAA++K
Sbjct: 4 KPKRPLSAYMLWLNSARESIKKENPDFK-VTEIAKKGGELWRGMKD--KSEWEAKAAKMK 60
Query: 168 ADYSKAM 174
+Y KAM
Sbjct: 61 EEYEKAM 67
>gi|339242839|ref|XP_003377345.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316973861|gb|EFV57410.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 229
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR R K D N PKR +AFF F + R E ++AHPD K V VA+E G WK + ++EK
Sbjct: 113 KRKRSK-KDPNAPKRALSAFFFFSNSKRAEIQQAHPDWK-VGQVAQELGRMWKAIDEDEK 170
Query: 157 KPYLDKAAELKADYSKAM 174
+ + D AA+ + Y + M
Sbjct: 171 RKFEDMAAKDRTRYEEDM 188
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
++ KP+ T + F+ +E+K+ +P+ + VT V+K+ KWK MT EEK + + A
Sbjct: 33 EAGKPRGKTTPYGFFVKMCYEEHKKKYPNENVQVTEVSKKCSAKWKTMTQEEKHRFYELA 92
Query: 164 AELKADYSKAMEGNG 178
A+ + Y +E G
Sbjct: 93 AKDRVRYDAELEAYG 107
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK D N PKRPP+AFF+F +FR + K P + VAK GE W + + E+K+PY
Sbjct: 86 KKFKDPNAPKRPPSAFFIFCSEFRPKVKGESPGLT-IGDVAKRLGEMWNSTSAEDKQPYE 144
Query: 161 DKAAELKADYSK 172
KAA+LK Y K
Sbjct: 145 KKAAKLKEKYGK 156
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S +K+ E+WK M+ +EK + D A
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 164 AELKADYSKAM 174
+ K Y + M
Sbjct: 64 RQDKVRYDREM 74
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F DFR + K P + VAK+ GE W E+K+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKVKGETPGLT-IGDVAKKLGEMWNGTCAEDKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYEK 156
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRP AFFLF ++R + K HP + VAK+
Sbjct: 71 EREMKTYIPPKGE-TKKKFKDPNAPKRPLLAFFLFCSEYRPQIKGEHP-GLSIGDVAKKL 128
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N + K+PY KAA+LK Y K
Sbjct: 129 GEMWNNTAADGKQPYEKKAAKLKEKYEK 156
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK+ D N PKRP +AFF F +D R ++ +PDS V VAKE G +W + D+ K Y
Sbjct: 87 RKRAKDPNAPKRPLSAFFWFCNDERPNVRQENPDS-SVGEVAKELGRRWNEVGDDVKAKY 145
Query: 160 LDKAAELKADYSKAM 174
AA+ KA Y K +
Sbjct: 146 EGLAAKDKARYEKEL 160
>gi|410044942|ref|XP_001169551.3| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 269
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP+AFFL+ ++ + K P + AK+ GE W N ++K+PY
Sbjct: 113 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGL-SIGDAAKKLGEMWNNTAADDKQPY 171
Query: 160 LDKAAELKADYSK 172
++A+LK Y K
Sbjct: 172 EKRSAKLKEKYEK 184
>gi|395542387|ref|XP_003773114.1| PREDICTED: high mobility group protein B2 isoform 1 [Sarcophilus
harrisii]
gi|395542389|ref|XP_003773115.1| PREDICTED: high mobility group protein B2 isoform 2 [Sarcophilus
harrisii]
Length = 207
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K PY K A+L
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHPGL-SIGDTAKKLGELWSEQSAKDKLPYEQKVAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KGDKARYDREM 75
>gi|126331239|ref|XP_001365344.1| PREDICTED: high mobility group protein B2-like [Monodelphis
domestica]
Length = 207
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE W + ++K PY K A+L
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHPGL-SIGDTAKKLGELWSEQSAKDKLPYEQKVAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KGDKARYDREM 75
>gi|67470045|ref|XP_650993.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|56467670|gb|EAL45607.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|449703510|gb|EMD43949.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 384
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D NKPK+P A+ LF + +YK+ PD K ++ + K+ G +WK + +E+KK Y+D+
Sbjct: 103 DENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKYIDQYY 161
Query: 165 ELKADY 170
KA+Y
Sbjct: 162 ASKAEY 167
>gi|156846079|ref|XP_001645928.1| hypothetical protein Kpol_1045p57 [Vanderwaltozyma polyspora DSM
70294]
gi|156116598|gb|EDO18070.1| hypothetical protein Kpol_1045p57 [Vanderwaltozyma polyspora DSM
70294]
Length = 291
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 87 KKPTSTEP----RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAK 142
KK T+P ++K + KD D N PKRP A+ LF + +++ +++ G V K
Sbjct: 68 KKELLTKPLKKTKSKSQKAKDRDPNLPKRPTNAYLLFCEVNKEKIRQS-----GTQDVTK 122
Query: 143 EAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAEN 197
E WKN+++E++KPY ++ + Y + ME NE + +A+ + EDK E+
Sbjct: 123 ALAEAWKNLSEEDRKPYYKLYSDDRERYKREMEIYTMNNENKKEAEIKSEDKTED 177
>gi|444721192|gb|ELW61941.1| High mobility group protein B1 [Tupaia chinensis]
Length = 300
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 76 AEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
A++NK + ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP
Sbjct: 64 AKVNKAR-YEREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GL 120
Query: 136 GVTGVAKEAGEKWKN 150
+ VAK+ GE W N
Sbjct: 121 SIGDVAKKLGEMWNN 135
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ +E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCWEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFKDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KVNKARYEREM 75
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++ + K HP + VAK+
Sbjct: 72 ERQMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKP 158
GE W N ++K+P
Sbjct: 130 GEMWNNTAADDKQP 143
>gi|148668459|gb|EDL00778.1| mCG116117 [Mus musculus]
Length = 244
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF +R + K HP + VAK+
Sbjct: 72 EREMKTYIPPK-RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKR 129
Query: 145 GEKWKNMTDEEKKP 158
GE W N ++K+P
Sbjct: 130 GEMWNNTAADDKQP 143
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAIADKARYER 73
Query: 173 AME 175
M+
Sbjct: 74 EMK 76
>gi|392878832|gb|AFM88248.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + A
Sbjct: 5 DPRQPRGKTSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEGLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|392873666|gb|AFM85665.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|392876068|gb|AFM86866.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYGREM 75
>gi|222619008|gb|EEE55140.1| hypothetical protein OsJ_02931 [Oryza sativa Japonica Group]
Length = 157
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 121 DDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+DFRK YKE +P K + V K GEKW MT EE+ Y D A E +A+Y KA+
Sbjct: 85 EDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAV 138
>gi|392881066|gb|AFM89365.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|157822723|ref|NP_001102933.1| high mobility group protein B4 [Rattus norvegicus]
gi|149023997|gb|EDL80494.1| rCG31445 [Rattus norvegicus]
Length = 181
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
P++PP++F LF D + K+ +P+ V VAK AG+ W +TD +K+PY KAA ++A
Sbjct: 93 PRKPPSSFLLFSLDHFAKLKQENPNW-TVVQVAKAAGKMWSMITDVDKRPYEQKAAIMRA 151
Query: 169 DY 170
Y
Sbjct: 152 KY 153
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
+ D NKPK+P +++FLF D RK+ E P + T A KWK +++EEK+ Y K
Sbjct: 373 NVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTAL-ISLKWKELSEEEKQVYNGK 431
Query: 163 AAELKADYSKAMEGNGDYN 181
AA+L Y K +E YN
Sbjct: 432 AAKLMEAYKKEVEA---YN 447
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK P +AF ++ ++ R +E ++K V VAK GE+WKN++D++K PY A
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRE---ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 165 ELKADYSKAME 175
+ K Y +AME
Sbjct: 308 KNKETYLQAME 318
>gi|297265082|ref|XP_001112681.2| PREDICTED: nuclear autoantigen Sp-100 isoform 9 [Macaca mulatta]
Length = 838
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 21 ASTSSATLMRGRDGSAFARCEECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPA 76
ST ++ + + CEE K P A + CS K E E A
Sbjct: 645 TSTRKKRILESHNNTLVDPCEEHEKKNPDASVDFSEFVKKCSEMWKTIFAKERGKFEDTA 704
Query: 77 EINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG 136
+ +K + ER+ T P+ ++ KK D + P+RPP AFF+F R + K HP
Sbjct: 705 KADKAR-YEREMKTRIPPKGEK--KKFKDPSAPRRPPLAFFMFCSKNRPKIKGEHP-GLS 760
Query: 137 VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+ GV K+ E W N +K+ Y AA+LK Y K
Sbjct: 761 IDGVVKKLAEMWNNTAVADKQFYKKVAAKLKEKYKK 796
>gi|392884250|gb|AFM90957.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|392878084|gb|AFM87874.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|392877754|gb|AFM87709.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|387913840|gb|AFK10529.1| high mobility group protein B1-like protein [Callorhinchus milii]
gi|392873522|gb|AFM85593.1| high mobility group protein [Callorhinchus milii]
gi|392873780|gb|AFM85722.1| high mobility group protein [Callorhinchus milii]
gi|392873902|gb|AFM85783.1| high mobility group protein [Callorhinchus milii]
gi|392873908|gb|AFM85786.1| high mobility group protein [Callorhinchus milii]
gi|392873950|gb|AFM85807.1| high mobility group protein [Callorhinchus milii]
gi|392873998|gb|AFM85831.1| high mobility group protein [Callorhinchus milii]
gi|392874244|gb|AFM85954.1| high mobility group protein [Callorhinchus milii]
gi|392874940|gb|AFM86302.1| high mobility group protein [Callorhinchus milii]
gi|392876248|gb|AFM86956.1| high mobility group protein [Callorhinchus milii]
gi|392876254|gb|AFM86959.1| high mobility group protein [Callorhinchus milii]
gi|392876362|gb|AFM87013.1| high mobility group protein [Callorhinchus milii]
gi|392876946|gb|AFM87305.1| high mobility group protein [Callorhinchus milii]
gi|392877468|gb|AFM87566.1| high mobility group protein [Callorhinchus milii]
gi|392877522|gb|AFM87593.1| high mobility group protein [Callorhinchus milii]
gi|392877744|gb|AFM87704.1| high mobility group protein [Callorhinchus milii]
gi|392879776|gb|AFM88720.1| high mobility group protein [Callorhinchus milii]
gi|392880382|gb|AFM89023.1| high mobility group protein [Callorhinchus milii]
gi|392880776|gb|AFM89220.1| high mobility group protein [Callorhinchus milii]
gi|392881032|gb|AFM89348.1| high mobility group protein [Callorhinchus milii]
gi|392881292|gb|AFM89478.1| high mobility group protein [Callorhinchus milii]
gi|392881318|gb|AFM89491.1| high mobility group protein [Callorhinchus milii]
gi|392883640|gb|AFM90652.1| high mobility group protein [Callorhinchus milii]
gi|392883646|gb|AFM90655.1| high mobility group protein [Callorhinchus milii]
gi|392883680|gb|AFM90672.1| high mobility group protein [Callorhinchus milii]
gi|392883988|gb|AFM90826.1| high mobility group protein [Callorhinchus milii]
gi|392884098|gb|AFM90881.1| high mobility group protein [Callorhinchus milii]
gi|392884156|gb|AFM90910.1| high mobility group protein [Callorhinchus milii]
gi|392884178|gb|AFM90921.1| high mobility group protein [Callorhinchus milii]
gi|392884306|gb|AFM90985.1| high mobility group protein [Callorhinchus milii]
gi|392884308|gb|AFM90986.1| high mobility group protein [Callorhinchus milii]
gi|392884314|gb|AFM90989.1| high mobility group protein [Callorhinchus milii]
gi|392884420|gb|AFM91042.1| high mobility group protein [Callorhinchus milii]
gi|392884450|gb|AFM91057.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|312075672|ref|XP_003140521.1| high mobility group protein 1.2 [Loa loa]
gi|307764316|gb|EFO23550.1| high mobility group protein 1.2 [Loa loa]
Length = 211
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR++K D N PKR +AFF F D R E ++ HP+ K V VA+E G WK + +EE+
Sbjct: 88 KRVKK---DPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEEER 143
Query: 157 KPYLDKAAELKADYSKAM 174
Y KA E K Y++ M
Sbjct: 144 AVYERKALEDKERYAEEM 161
>gi|392883682|gb|AFM90673.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 65 MNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFR 124
M + + VVE + + + ST KR+ +K D N PKR +A+ F ++ R
Sbjct: 1 MEMRSSVVECVSHLVTTTTTTAQTVMSTREPKKRVTRKKKDPNAPKRSMSAYMFFANENR 60
Query: 125 KEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
K +P++ + K GEKWKNM+ E+K+PY KAA K Y
Sbjct: 61 DIVKSENPNA-TFGQLGKLLGEKWKNMSTEDKEPYDAKAAADKKRY 105
>gi|395732940|ref|XP_002813012.2| PREDICTED: nuclear autoantigen Sp-100-like [Pongo abelii]
Length = 263
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP AFFLF ++R + K HP + V K+ W N +K+ Y +KAA
Sbjct: 150 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL-SIDDVVKKLAGMWNNTAAADKQFYENKAA 208
Query: 165 ELKADYSK 172
LK Y K
Sbjct: 209 RLKEKYKK 216
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP +A+ L+++ R++ K HP +T ++K+AGE WK M+ E+K+ + KA
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAE 601
Query: 165 ELKADYSKAME----GNGD 179
+ + +Y KAM+ G GD
Sbjct: 602 DARREYEKAMKEYEGGRGD 620
>gi|336274626|ref|XP_003352067.1| hypothetical protein SMAC_00615 [Sordaria macrospora k-hell]
gi|380096352|emb|CCC06400.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 595
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R +D N P+RPP+A+ LF + R++ K + T +AK GE W+N+T EK+PY
Sbjct: 111 RHPKADENAPERPPSAYVLFSNKMREDLKG---RNLSFTEIAKLVGENWQNLTPAEKEPY 167
Query: 160 LDKAAELKADY 170
KA K Y
Sbjct: 168 ESKAQAYKEKY 178
>gi|392876202|gb|AFM86933.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQRSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|392883584|gb|AFM90624.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCPERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|157109478|ref|XP_001650689.1| hypothetical protein AaeL_AAEL005309 [Aedes aegypti]
gi|108879019|gb|EAT43244.1| AAEL005309-PA [Aedes aegypti]
Length = 308
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P KR RK+ D+N PK P T + +M++ R + HP V + K E+W ++D
Sbjct: 48 PIVKRKRKRVKDANAPKHPLTGYVRYMNEKRDAIRLKHPSLSAVE-ITKLLAEEWGTLSD 106
Query: 154 EEKKPYLDKAAELKADYSK 172
E KKP+L+ A + Y +
Sbjct: 107 EVKKPFLEAAEADRVRYHR 125
>gi|195381983|ref|XP_002049712.1| GJ20604 [Drosophila virilis]
gi|194144509|gb|EDW60905.1| GJ20604 [Drosophila virilis]
Length = 111
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
++PKRP +A+ L++++ R++ K+ +P SK VT +AK GE W+ + D K + KA +
Sbjct: 3 GDRPKRPLSAYMLWLNENREQIKKENPGSK-VTDIAKRGGELWRGLKD--KTEWEQKAIK 59
Query: 166 LKADYSKAM---EGNG 178
+K DY+KA+ E NG
Sbjct: 60 MKEDYNKAVKEYEANG 75
>gi|158300246|ref|XP_320213.4| AGAP012335-PA [Anopheles gambiae str. PEST]
gi|157013066|gb|EAA00360.4| AGAP012335-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP TAF LFM+ R++ K+ P +T ++K+ GE WK + D KK + KAA
Sbjct: 563 DPNAPKRPSTAFMLFMNASREQIKKDFP-GLSITEMSKKGGELWKELKD--KKEWEAKAA 619
Query: 165 ELKADYSKAM 174
+ K DY++AM
Sbjct: 620 KAKDDYTEAM 629
>gi|195123269|ref|XP_002006130.1| GI20867 [Drosophila mojavensis]
gi|193911198|gb|EDW10065.1| GI20867 [Drosophila mojavensis]
Length = 111
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 6/74 (8%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
+PKRP +A+ L++++ R++ K+ +P SK VT +AK GE W+ + D K + KA ++K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKENPGSK-VTDIAKRGGELWRGLKD--KTEWEQKAIKMK 61
Query: 168 ADYSKAM---EGNG 178
DY+KA+ E NG
Sbjct: 62 EDYNKAVKEYEANG 75
>gi|345780695|ref|XP_851529.2| PREDICTED: high mobility group protein B4 [Canis lupus familiaris]
Length = 193
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P+RPP++F +F D + K +P + V VAK +G W + EK+PY +AA
Sbjct: 91 DPQAPRRPPSSFLIFCQDHYAQLKRENP-TWSVVQVAKASGRMWSVTSGAEKQPYEQRAA 149
Query: 165 ELKADYSKAME 175
L+A Y + +E
Sbjct: 150 VLRARYQEELE 160
>gi|403267258|ref|XP_003925761.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Saimiri boliviensis boliviensis]
Length = 227
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKRPP+ FFLF +F + K +P + VAK GE+ N++D K+P + KAA
Sbjct: 139 DPDAPKRPPSGFFLFCSEFCPKIKSTNPGI-SIGDVAKRLGERRNNLSDSGKRPSITKAA 197
Query: 165 ELK 167
+LK
Sbjct: 198 KLK 200
>gi|157138017|ref|XP_001664121.1| hypothetical protein AaeL_AAEL013914 [Aedes aegypti]
gi|108869587|gb|EAT33812.1| AAEL013914-PA [Aedes aegypti]
Length = 308
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P KR RK+ D+N PK P T + +M++ R + HP V + K E+W ++D
Sbjct: 48 PIVKRKRKRVKDANAPKHPLTGYVRYMNEKRDAIRLKHPSLSAVE-ITKLLAEEWGTLSD 106
Query: 154 EEKKPYLDKAAELKADYSK 172
E KKP+L+ A + Y +
Sbjct: 107 EVKKPFLEAAEADRVRYHR 125
>gi|336465411|gb|EGO53651.1| hypothetical protein NEUTE1DRAFT_106544 [Neurospora tetrasperma
FGSC 2508]
gi|350295304|gb|EGZ76281.1| hypothetical protein NEUTE2DRAFT_122932 [Neurospora tetrasperma
FGSC 2509]
Length = 592
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R +D N P+RPP+A+ LF + R++ K + T +AK GE W+N+T EK+PY
Sbjct: 115 RHPKADENAPERPPSAYVLFSNKMREDLKG---RNLSFTEIAKLVGENWQNLTPAEKEPY 171
Query: 160 LDKAAELKADY 170
KA K Y
Sbjct: 172 ESKAQAYKEKY 182
>gi|365759088|gb|EHN00901.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 185
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKRP +A+FLF+ D R ++ + +P + + ++K AGEKW+ + + K Y+ + EL +
Sbjct: 45 PKRPTSAYFLFLQDHRSQFAKENPTLRP-SEISKIAGEKWQTLKSDIKDKYISQRKELYS 103
Query: 169 DYSKAMEGNGDYNEVEDKAD------------NEVEDKAENEVEDKAEKE----DGDEGG 212
+Y KA + E +DK NEV K + DK++ E GD+
Sbjct: 104 EYQKAKK------EFDDKLPPKRPAGPFIKYANEVRSKVFAQHPDKSQLELMKVIGDKWQ 157
Query: 213 S-EKDVAEKEVQQDEENLDDY 232
S +++ K +Q+ ++ + +Y
Sbjct: 158 SLDQNTKNKYIQEYKKAIQEY 178
>gi|392883678|gb|AFM90671.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ ++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMFSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|357608070|gb|EHJ65807.1| mobility group protein 1B [Danaus plexippus]
Length = 180
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKP 158
+RKK ++KPKRP +A+ L+++ R++ K +P K VT +AK+ GE W++M D K
Sbjct: 55 IRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLK-VTEIAKKGGEIWRSMKD--KTV 111
Query: 159 YLDKAAELKADYSKAME 175
+ +KAA+ K Y+K +E
Sbjct: 112 WEEKAAKAKEQYTKDLE 128
>gi|401838192|gb|EJT41931.1| ABF2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 185
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
PKRP +A+FLF+ D R ++ + +P + + ++K AGEKW+ + + K Y+ + EL +
Sbjct: 45 PKRPTSAYFLFLQDHRSQFAKENPTLRP-SEISKIAGEKWQTLKSDIKDKYISQRKELYS 103
Query: 169 DYSKAMEGNGDYNEVEDKAD------------NEVEDKAENEVEDKAEKE----DGDEGG 212
+Y KA + E +DK NEV K + DK++ E GD+
Sbjct: 104 EYQKAKK------EFDDKLPPKRPAGPFIKYANEVRSKVFAQHPDKSQLELMKVIGDKWQ 157
Query: 213 S-EKDVAEKEVQQDEENLDDY 232
S +++ K +Q+ ++ + +Y
Sbjct: 158 SLDQNTKNKYIQEYKKAIQEY 178
>gi|85110964|ref|XP_963712.1| hypothetical protein NCU02819 [Neurospora crassa OR74A]
gi|28925429|gb|EAA34476.1| hypothetical protein NCU02819 [Neurospora crassa OR74A]
Length = 597
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R +D N P+RPP+A+ LF + R++ K + T +AK GE W+N+T EK+PY
Sbjct: 115 RHPKADENAPERPPSAYVLFSNKMREDLKG---RNLSFTEIAKLVGENWQNLTPAEKEPY 171
Query: 160 LDKAAELKADY 170
KA K Y
Sbjct: 172 ESKAQAYKEKY 182
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFF F ++R + K HP + VA++
Sbjct: 495 EREMETYIPPKGE-TKKKFKDPNAPKRPPSAFFWFCSEYRPKIKGEHPGLS-IGDVAEKL 552
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N + +K+P KAA+LK Y K
Sbjct: 553 GEMWSNTAEGDKQPEEKKAAKLKEKYEK 580
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
ST AK+ KKD NKPKR +A+ F+ D+R+ K +P++ V K G KW+
Sbjct: 12 STASDAKKRTKKDP--NKPKRALSAYMFFVQDYRERIKTENPEA-TFGDVGKLLGIKWRE 68
Query: 151 MTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M + EKKPY KA KAD +A N DY
Sbjct: 69 MNENEKKPYEAKA---KADKERADRENADY 95
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + KK D N PKRPP+AF LF ++R + K HP + VAK+
Sbjct: 21 EREMKTYIPPKGE-TEKKVKDPNAPKRPPSAFLLFCSEYRPKIKGEHPGL-FIGDVAKKL 78
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N K+PY KAA+LK Y K
Sbjct: 79 GEMWNNTAAGGKQPYEKKAAKLKEKYEK 106
>gi|322794517|gb|EFZ17570.1| hypothetical protein SINV_80020 [Solenopsis invicta]
Length = 322
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 76/139 (54%), Gaps = 12/139 (8%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
+T R K+ +K D+ P++P + +FLF++D R++ + +P S T + K +W
Sbjct: 59 NTPNRTKKRKKAPRDATAPRQPLSGYFLFLNDRREKVRNQNP-SLTFTEITKLLAAEWSK 117
Query: 151 MTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED-KADNEVEDKAENEVEDKAEKEDGD 209
+ ++K+ YLD A + K Y++ DY + E + NE + + +N E+K E+
Sbjct: 118 LPIDQKQHYLDAAEQDKERYNREF---SDYKQTEAYRLFNEKQSERQN--ENKKER---- 168
Query: 210 EGGSEKDVAEKEVQQDEEN 228
G++ + + +VQQD++N
Sbjct: 169 -NGTDVNAEQNDVQQDKDN 186
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++ + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKP 158
GE W N ++K+P
Sbjct: 130 GEMWNNTAADDKQP 143
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73
Query: 173 AME 175
M+
Sbjct: 74 EMK 76
>gi|50294784|ref|XP_449803.1| hypothetical protein [Candida glabrata CBS 138]
gi|49529117|emb|CAG62781.1| unnamed protein product [Candida glabrata]
Length = 196
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P+ ++ + K+ D N PKRP A+ LF + +++ KE G V K+ E WKN+++
Sbjct: 84 PKTRKQKLKERDPNMPKRPTNAYLLFCEMNKEKIKEG-----GSVDVTKDLTESWKNLSE 138
Query: 154 EEKKPYLDKAAELKADYSKAMEGNGDYNEVED----------KADNEVEDKAENEVED 201
+E+KPY E + Y ME ++ ED + E D+ NEVE+
Sbjct: 139 QERKPYYRLYNEDRERYQAEMEAYNKKSKTEDAGKEDSMSKNSSKQEDSDQTSNEVEN 196
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKR P+ FFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRTPSVFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 130 GEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 163 AAELKADYSKAME 175
A KA Y + M+
Sbjct: 64 AKADKARYEREMK 76
>gi|339250984|ref|XP_003372975.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316969210|gb|EFV53345.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 599
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 96 AKRLRKKDS-DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
A R RK++ D N PKR +AFF F R E +++HPD K V +A+E G WK + DE
Sbjct: 82 ALRKRKRNKKDPNAPKRALSAFFFFSHAERPEVQKSHPDWK-VGQLAQELGRMWKALNDE 140
Query: 155 EKKPYLDKAAELKADY 170
+K+ Y + A + KA Y
Sbjct: 141 QKRKYEEMAIKDKARY 156
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
KR R+K D P+RPP++F LF D + K +P+ V VAK + W TD +
Sbjct: 83 GKRKRRK-RDPQAPRRPPSSFLLFCQDNYAQLKRENPNW-SVAQVAKASARMWSTTTDVD 140
Query: 156 KKPYLDKAAELKADY 170
K+PY +AA L+A Y
Sbjct: 141 KQPYEQRAALLRAKY 155
>gi|444519462|gb|ELV12862.1| High mobility group protein B1 [Tupaia chinensis]
Length = 157
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
KK D + PKRPP+AFFLF ++ + K HPD + AK+ GE W N + K+PY
Sbjct: 35 KKFKDPSAPKRPPSAFFLFCSEYHPQIKGEHPDI-SIRDAAKKLGEMWNNTAADGKQPY 92
>gi|169869341|ref|XP_001841237.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
gi|116497705|gb|EAU80600.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
Length = 255
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG---VTGVAKEAGEKWKNMTDEEKKPYLD 161
D N PKRP +++ LF ++ R E K +P+ +T ++ EKWKNMTDE+K+ Y
Sbjct: 73 DPNAPKRPASSYILFQNEVRNELKRQNPNLTNPELLTLIS----EKWKNMTDEQKETYNQ 128
Query: 162 KAAELKADYSKA 173
+ + K +YS+A
Sbjct: 129 QMLKAKEEYSQA 140
>gi|393910908|gb|EFO21584.2| hypothetical protein LOAG_06904 [Loa loa]
Length = 268
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEA--HPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRP TA+ F++ RKE ++ H + + +A + G++WK + D++KK Y DK
Sbjct: 23 DENAPKRPRTAYVHFVNARRKELVDSGSHEVLRQRSFLA-DIGKQWKILPDDQKKFYFDK 81
Query: 163 AAELKADYSKAME 175
+A+ ADY KAME
Sbjct: 82 SAKEHADYEKAME 94
>gi|336373684|gb|EGO02022.1| hypothetical protein SERLA73DRAFT_177720 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386499|gb|EGO27645.1| hypothetical protein SERLADRAFT_461466 [Serpula lacrymans var.
lacrymans S7.9]
Length = 365
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKE---YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
D N PK+P +A+F+F+ R E +E + + T + A KW++MTD+E+KP+L
Sbjct: 233 DPNAPKKPLSAYFMFLQRIRSEPALVREVFGEEQETTKQSVLAAAKWRSMTDDERKPFLA 292
Query: 162 KAAELKADYSKA 173
+A + K DY A
Sbjct: 293 QAEQEKLDYEAA 304
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
PK P+A+ L+ D+ + ++ + V AKEAG+++ +++ EEK+PY ++ LK
Sbjct: 133 PKLAPSAWQLYFTDWIQRHQATNTRKLNVAQAAKEAGQEYASLSTEEKEPYKRRSLALK 191
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKR +AFF F D FR + + HPD K V+ +AKE G +W+ +D+EK Y +A
Sbjct: 95 DPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEK--YERRAQ 151
Query: 165 ELKADYSKAME 175
K Y + ME
Sbjct: 152 NDKLRYEQDME 162
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDEEKKPY 159
D N+PK P T + F+ R+E+++ HP + +K+ EKWK M E++K +
Sbjct: 5 DKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCF 60
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
ST AK+ KKD NKPKR +A+ F+ D+R+ K +P++ V K G KW+
Sbjct: 12 STASDAKKRTKKDP--NKPKRALSAYMFFVQDYRERIKAENPEA-TFGDVGKLLGIKWRE 68
Query: 151 MTDEEKKPYLDKAAELKADYSKAMEGNGDY 180
M + EKKPY KA KAD +A N DY
Sbjct: 69 MNENEKKPYEAKA---KADKERADRENADY 95
>gi|440800724|gb|ELR21759.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 128
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP T + F + R + KE +PD G + K+ KWK+M++EEK+PYL A
Sbjct: 28 DPNAPKRPKTGYIFFSAEERVKVKEDNPDL-GFGDITKQVSAKWKDMSEEEKEPYLTLAK 86
Query: 165 ELKADYSKAM 174
+ K Y K M
Sbjct: 87 KDKERYEKEM 96
>gi|170575738|ref|XP_001893364.1| HMG box family protein [Brugia malayi]
gi|158600686|gb|EDP37800.1| HMG box family protein [Brugia malayi]
Length = 269
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEA--HPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
D N PKRP TA+ F++ RKE E+ H + + +A + G++WK + D++KK Y+DK
Sbjct: 23 DENAPKRPRTAYVHFVNARRKELAESGSHEALRQRSFLA-DIGKQWKVLPDDQKKFYVDK 81
Query: 163 AAELKADYSKAME 175
+A+ A+Y KAME
Sbjct: 82 SAKEHAEYEKAME 94
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKK 157
+K+ D N PKRPP+AFFLF +FR + K +P G+T AK+ GE W + T E+K+
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCAEFRPKVKSENP---GLTIGDTAKKLGEMWNSKTAEDKQ 141
Query: 158 PYLDKAAELKADYSK 172
PY KAA+LK Y K
Sbjct: 142 PYEKKAAKLKEKYDK 156
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S +K+ E+WK M+ +EK + D A
Sbjct: 4 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDMA 63
Query: 164 AELKADYSKAME 175
+ K Y + M+
Sbjct: 64 KQDKVRYEREMK 75
>gi|355757371|gb|EHH60896.1| hypothetical protein EGM_18788, partial [Macaca fascicularis]
Length = 189
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ P+A + K D N PKRPP AFF+F + + KE HP V+ VAK+
Sbjct: 68 EREMKIYIPPKA-ETKMKFKDPNAPKRPPLAFFMFSSEDCPKIKE-HP-GLSVSDVAKKL 124
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178
GE W +++K PY KA +LK Y K + G
Sbjct: 125 GEMWNYTAEDDKHPYEKKAVKLKEKYEKDIAAFG 158
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKR +AFF F D FR + + HPD K V+ +AKE G +W+ +D+EK Y +A
Sbjct: 95 DPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEK--YEQRAQ 151
Query: 165 ELKADYSKAMEGNGDYNEVEDKA 187
K Y + M+ + DK
Sbjct: 152 NDKLRYEQDMQKYKGWLVCSDKT 174
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDEEKKPY 159
D N+PK P + F+ R+E+++ HP + +K+ EKWK M E++K +
Sbjct: 5 DKNRPKPPMKPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCF 60
>gi|67524855|ref|XP_660489.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|74597086|sp|Q5B995.1|NHP6_EMENI RecName: Full=Non-histone chromosomal protein 6
gi|40744280|gb|EAA63456.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|259486178|tpe|CBF83812.1| TPA: Non-histone chromosomal protein 6
[Source:UniProtKB/Swiss-Prot;Acc:Q5B995] [Aspergillus
nidulans FGSC A4]
Length = 106
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKKP 158
+K D N PKR +A+ F +D R + +E +P G++ V K GEKWK+++D+E+KP
Sbjct: 19 RKKKDPNAPKRGLSAYMFFANDNRDKVREENP---GISFGQVGKMLGEKWKSLSDKERKP 75
Query: 159 YLDKAAELKADY 170
Y DKAA K Y
Sbjct: 76 YEDKAAADKKRY 87
>gi|194755944|ref|XP_001960239.1| GF11622 [Drosophila ananassae]
gi|190621537|gb|EDV37061.1| GF11622 [Drosophila ananassae]
Length = 111
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 6/74 (8%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
+PKRP +A+ L++++ R++ K+ +P SK VT +AK GE W+ + D K + KA ++K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRGLKD--KSEWEQKAIKMK 61
Query: 168 ADYSKAM---EGNG 178
DY+KA+ E NG
Sbjct: 62 EDYNKAVKEYEANG 75
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKR +A+ F D+R+ K +PD+ G V K G KWK M + EK+PY+++AA
Sbjct: 29 DPNAPKRALSAYMFFSQDWRERVKAENPDA-GFGEVGKLLGAKWKEMDESEKRPYIEQAA 87
Query: 165 -------ELKADYSKAMEG 176
E KA+Y K G
Sbjct: 88 RDKARAEEEKANYEKKSAG 106
>gi|312385332|gb|EFR29859.1| hypothetical protein AND_00900 [Anopheles darlingi]
Length = 730
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D+N PKRP TAF L+M+ R + ++ +P +T +AK+ GE WK++ D KK + KAA
Sbjct: 556 DANAPKRPATAFMLWMNATRDQIRKDNP-GLSITEIAKKGGELWKDLKD--KKDWEAKAA 612
Query: 165 ELKADYSKAM 174
+ K +Y++AM
Sbjct: 613 KAKENYTEAM 622
>gi|402583047|gb|EJW76991.1| hypothetical protein WUBG_12099 [Wuchereria bancrofti]
Length = 170
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR++K D N PKR +AFF F D R E ++ HP+ K V VA+E G WK + +EE+
Sbjct: 88 KRVKK---DPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGEEER 143
Query: 157 KPYLDKAAELKADYSKAM 174
Y KA E K Y++ +
Sbjct: 144 AVYERKALEDKERYAEVL 161
>gi|254577149|ref|XP_002494561.1| ZYRO0A04378p [Zygosaccharomyces rouxii]
gi|238937450|emb|CAR25628.1| ZYRO0A04378p [Zygosaccharomyces rouxii]
Length = 268
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 87 KKPTSTEP----RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAK 142
KK T+P ++KR + KD D N PKRP A+ LF + +++ ++ +G V+K
Sbjct: 69 KKELLTKPLKKTKSKRQKAKDRDPNMPKRPTNAYLLFCEMNKEKVRQ-----QGSQDVSK 123
Query: 143 EAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
+ E WKN+ ++++KPY E + Y K ME
Sbjct: 124 DLTEAWKNLNEQDRKPYYKLYTEDRERYQKEME 156
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
Length = 102
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 91 STEPRAKR-LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
ST + KR + KK D N PKR +A+ +F ++ R +E +P S V K GE+WK
Sbjct: 6 STTRKTKRGVEKKKKDPNAPKRGLSAYMIFANEQRASVREENP-SITFGQVGKVLGERWK 64
Query: 150 NMTDEEKKPYLDKAAELKADY 170
+TD+++KPY +KAA K Y
Sbjct: 65 ALTDKQRKPYEEKAATDKQRY 85
>gi|403419540|emb|CCM06240.1| predicted protein [Fibroporia radiculosa]
Length = 763
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 95 RAKRLRKKDS-DSNKPKRPPTAFFLFMDDFRKE---YKEAHPDSKGVTGVAKEAGEKWKN 150
RA + RK + D N PK+P +A+F+F+ R + KE D T + A KW++
Sbjct: 619 RAGKSRKGNIKDPNAPKKPLSAYFMFLQRIRSDPELVKEVFGDESETTKQSVLAAGKWRS 678
Query: 151 MTDEEKKPYLDKAAELKADYSKAM----EGNGDYN 181
MTDEE+KP+L +A + K +Y A EG Y
Sbjct: 679 MTDEERKPFLAQAEQEKLEYESARKLYEEGTTGYG 713
>gi|323450291|gb|EGB06173.1| hypothetical protein AURANDRAFT_72060 [Aureococcus anophagefferens]
Length = 667
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D N PK +A+ +F + R E KE HPD + + +E G++WK +TD++KKPY+D A
Sbjct: 578 DPNAPKGKSSAYIMFGNAKRAEVKEQHPDFS-LGDIGRELGKRWKELTDDDKKPYVDLA 635
>gi|310790717|gb|EFQ26250.1| HMG box protein [Glomerella graminicola M1.001]
Length = 500
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 67 LEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKE 126
LEAQ E+P K P K+ K R D N P+RPP+A+ LF + R +
Sbjct: 82 LEAQRFEQPRLEVKDGPVVTKR--------KYRRHPKPDENAPERPPSAYVLFSNKMRDD 133
Query: 127 YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
K + T +AK GE W+N+T EK+PY A + K Y
Sbjct: 134 LKG---RNLTFTEIAKLVGEHWQNLTPGEKEPYETSALKAKEKY 174
>gi|444706303|gb|ELW47646.1| Glycine/arginine-rich protein 1 [Tupaia chinensis]
Length = 485
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
++K D N PKRPP+AFFLF ++R + KE HP + +AK+ GE W + + +P
Sbjct: 31 KEKFKDPNAPKRPPSAFFLFCSEYRPKIKE-HPGLS-IGDIAKKLGELWTSTAADGTQPR 88
Query: 160 LDKAAELKADYSKAM 174
KAA+L+ + KA+
Sbjct: 89 -KKAAKLEEKHGKAI 102
>gi|384491112|gb|EIE82308.1| hypothetical protein RO3G_07013 [Rhizopus delemar RA 99-880]
Length = 425
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
ST P+ K R D N P +PP+A+ +F +D R + K + +AK G++WKN
Sbjct: 168 STAPKRKYRRHAKPDRNAPIKPPSAYVMFSNDARAKLKN---QNLSFAELAKVVGDQWKN 224
Query: 151 MTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182
++ EK+ Y KA K +Y A+E NE
Sbjct: 225 LSYYEKQAYERKATRAKDEYLAALEHYRQTNE 256
>gi|392343504|ref|XP_003754904.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|392356039|ref|XP_003752197.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N P++PP++F LF D E KE HP+ V VAK A W ++ +K Y++KAA
Sbjct: 89 DPNAPRKPPSSFLLFSMDHFDEIKEQHPNW-TVAQVAKAAKRMWSRCSEVDKSHYVEKAA 147
Query: 165 ELKADY 170
L+A Y
Sbjct: 148 ILRAKY 153
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPY 159
+PK + + FM DFR + +E P+S T +++ EKW+ ++++EK+ Y
Sbjct: 8 RPKVNVSPYVHFMMDFRNQMREQQPNSYYDFTEFSRKCSEKWRTISEQEKRKY 60
>gi|283462216|gb|ADB22402.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 241
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKR + FFLF + R E K+ HP+ GV VAK GE+WKN++ +K Y +AA
Sbjct: 121 DPDAPKRNLSPFFLFCNVKRAEVKKVHPNW-GVGDVAKALGEQWKNVSAADKAKYEKEAA 179
Query: 165 ELKADYSKAMEG 176
+ K Y K ME
Sbjct: 180 KEKIRYEKDMEA 191
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDEEK 156
++ K + +KPK +A+ F+ R+E+K+ HP V +K+ E+WK MTD+EK
Sbjct: 25 KIMGKKGNPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEK 84
Query: 157 KPYLDKAAELKADYSKAME 175
K + D A + K Y+ ME
Sbjct: 85 KVFHDMADKDKERYNTEME 103
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 87 KKPTSTEPRAKRL-----------RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK 135
K PT++ RA +L KK+ D N PKRP +A+ F D+R+ K +PD
Sbjct: 3 KDPTASSKRAPKLDCDGNPVKTKRVKKEKDPNAPKRPLSAYMYFSQDWRERIKTENPDV- 61
Query: 136 GVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
+ + G KWK +++EEKKPY D A+
Sbjct: 62 SFGEIGRLLGLKWKGLSEEEKKPYEDMAS 90
>gi|444713636|gb|ELW54532.1| High mobility group protein B1 [Tupaia chinensis]
Length = 148
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
P +KK D N PKRPP+ FFLF ++R + +E HP + VAK+ GE W N
Sbjct: 18 PTTGETKKKFKDPNGPKRPPSVFFLFCSEYRPKIRE-HPGLL-IGDVAKKLGEMWNNTAA 75
Query: 154 EEKKPY 159
K+PY
Sbjct: 76 GTKQPY 81
>gi|405977513|gb|EKC41956.1| High mobility group protein B3 [Crassostrea gigas]
Length = 202
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
+D+ KPKRP +A+F F+ DFR + K D K + K AGE W+N+ D EKKP+ A
Sbjct: 94 NDAGKPKRPQSAYFCFLADFRLKMKGKDIDHKEII---KMAGEAWRNLDDNEKKPFEKLA 150
Query: 164 AELKADYSKAM 174
+ + Y +A+
Sbjct: 151 QKEQEKYEQAL 161
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 94 PRAKRLRKKDS-DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMT 152
P+A+ RK+ + D N+PKR +A+F F+ R++ K+A + KE KW M
Sbjct: 4 PKAEGSRKRKAKDPNRPKRATSAYFFFLSKMREDSKKAGKPITKIAEFTKECSAKWAKMN 63
Query: 153 DEEKKPYLDKAAELKADYSKAM 174
+++K+P+ KA K Y M
Sbjct: 64 EKDKEPFAKKALTDKNRYDAEM 85
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 86 RKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAG 145
RK T + R + ++K D N P RP +A+FL+ ++ R++ ++ V VAK G
Sbjct: 572 RKDETKSSKRQTKKQEKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGG 631
Query: 146 EKWKNMTDEEKKPYLDKAAELKADY 170
E W+NM E K Y + ELK Y
Sbjct: 632 ELWRNMDSETKSTYQSRVDELKKKY 656
>gi|395329999|gb|EJF62384.1| hypothetical protein DICSQDRAFT_161203 [Dichomitus squalens
LYAD-421 SS1]
Length = 662
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKE---YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
D N PK+P +A+F+F+ R + KE D T + A KW++MTDEE+KP+L
Sbjct: 523 DPNAPKKPLSAYFMFLQRIRSDPELVKEVFGDETETTKQSVLAAGKWRSMTDEERKPFLA 582
Query: 162 KAAELKADYSKAM----EGNGDY 180
+A + K +Y A EG Y
Sbjct: 583 QAEQEKLEYESARKMYEEGTTGY 605
>gi|350397805|ref|XP_003484997.1| PREDICTED: high mobility group protein 20A-like [Bombus impatiens]
Length = 328
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 79 NKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
N A T+T RAK+ +K D+ PK+P T +F F++D R++ + +P +
Sbjct: 53 NNTASAVASNTTNTTNRAKKRKKIPRDATAPKQPLTGYFRFLNDRREKVRTENP-TLSFA 111
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENE 198
+ K +W + ++K+ YLD A + K Y++ DY + E A +K +E
Sbjct: 112 EITKLLASEWSTLPADQKQQYLDAAEQDKERYNREF---SDYKQTE--AYRLFSEKQSSE 166
Query: 199 VEDKAEKEDGDEGGSEKDVAEKEVQQDEEN 228
++ ++ +G + SE++ ++QQD++N
Sbjct: 167 KQENKKERNGTDVNSEQN----DIQQDKDN 192
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
K TST+ R + +K D + PKRP +A+ F D R+ K A+P++ G V + G
Sbjct: 9 KSSTSTQKRTTKAKK---DPDAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGA 64
Query: 147 KWKNMTDEEKKPYLDKA 163
KWK M++ EKKPY D A
Sbjct: 65 KWKEMSEAEKKPYNDMA 81
>gi|351712376|gb|EHB15295.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKE 143
ER+ T P+ + +KK D N PKRPP+AF LF ++ + K HP S G VAK+
Sbjct: 21 EREMKTYIPPKGET-KKKFKDPNAPKRPPSAFLLFCSEYHPKIKGGHPRLSNG--DVAKK 77
Query: 144 AGEKWKNMTDEEKKPY 159
GE W N ++K PY
Sbjct: 78 LGEMWNNNAADDKPPY 93
>gi|392876906|gb|AFM87285.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCFDHRLRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|355782652|gb|EHH64573.1| hypothetical protein EGM_17820, partial [Macaca fascicularis]
Length = 159
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA+LK Y K
Sbjct: 60 FLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEK 114
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKR +AFF F D FR + + HPD K V+ +AKE G +W+ +D+EK Y +A
Sbjct: 95 DPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEK--YERRAQ 151
Query: 165 ELKADYSKAME 175
K Y + ME
Sbjct: 152 NDKLRYEQDME 162
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDEEKKPY 159
D N+PK P T + F+ R+E+++ HP + +K+ EKWK M E++K +
Sbjct: 5 DKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMNMEQRKCF 60
>gi|45198302|ref|NP_985331.1| AFL219Wp [Ashbya gossypii ATCC 10895]
gi|44984189|gb|AAS53155.1| AFL219Wp [Ashbya gossypii ATCC 10895]
gi|374108559|gb|AEY97465.1| FAFL219Wp [Ashbya gossypii FDAG1]
Length = 182
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKP 158
LRK P+RPP + L++ + HP++ V +++ A KWK+M+D +KKP
Sbjct: 31 LRKTLLKEQSPRRPPAVYALYLKSIMPSVRSEHPNATFVE-LSRLANNKWKSMSDHQKKP 89
Query: 159 YLDKAAELKADYSKA 173
Y D++ L +Y A
Sbjct: 90 YYDESHRLFKEYHSA 104
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
PKRP T F LF +D R HP K T + + GEKWK + ++K YLD AA
Sbjct: 114 PKRPSTGFILFCNDVRPHVAAEHPLLK-TTDIVRLLGEKWKALPFDKKNRYLDLAA 168
>gi|340923867|gb|EGS18770.1| hypothetical protein CTHT_0053790 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 576
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R D N P+RPP+A+ LF + R++ K + T +AK GE W+N+T EEK+PY
Sbjct: 110 RHPKPDENAPERPPSAYVLFANKMREDLKG---RNLSFTEMAKLVGENWQNLTPEEKEPY 166
Query: 160 LDKAAELKADY 170
+A K Y
Sbjct: 167 ETQAQRCKDKY 177
>gi|444520312|gb|ELV12956.1| High mobility group protein B1 [Tupaia chinensis]
Length = 150
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKE 143
ER+ T P+ + +KK D N PKRPP AFFLF ++ + K HP S GV AK+
Sbjct: 60 EREMKTYIPPKGET-KKKFKDPNVPKRPPLAFFLFCFEYCPKIKGKHPGLSTGV--AAKK 116
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+PY KAA+LK Y K
Sbjct: 117 LGELWNNTAADDKQPYEKKAAKLKEKYEK 145
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK+ D N PKRP +AFF F +D R ++ PD+ V VAKE G +W + D+ K Y
Sbjct: 87 RKRAKDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNEVGDDVKSKY 145
Query: 160 LDKAAELKADYSKAMEG 176
AA+ KA Y K ++
Sbjct: 146 EGLAAKDKARYEKELKA 162
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMT 152
RAKR KK D N PKR +A+ F ++ R+ +E +P G++ V K GE+WK ++
Sbjct: 9 RAKRTEKKKKDPNAPKRGLSAYMFFANEQRENVREENP---GISFGQVGKVLGERWKALS 65
Query: 153 DEEKKPYLDKAAELKADYSKAMEGNGDYN 181
D ++KPY AA+ AD + E +YN
Sbjct: 66 DTQRKPY---AAKADADKIRYEEEKANYN 91
>gi|355562304|gb|EHH18898.1| hypothetical protein EGK_19468, partial [Macaca mulatta]
Length = 159
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 117 FLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
FLF +FR + K +P + VAK+ GE W N+ D EK+PY+ KAA+LK Y K
Sbjct: 60 FLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEK 114
>gi|38047781|gb|AAR09793.1| similar to Drosophila melanogaster HmgZ, partial [Drosophila
yakuba]
Length = 104
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
++PKRP +A+ L++++ R++ K+ +P SK VT +AK GE W+ + D K + KA +
Sbjct: 3 GDRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD--KTEWEQKAIK 59
Query: 166 LKADYSKAM---EGNG 178
+K +Y+KA+ E NG
Sbjct: 60 MKEEYNKAVKEYEANG 75
>gi|148277100|ref|NP_081312.2| high mobility group protein B4 [Mus musculus]
gi|81892334|sp|Q6P8W9.1|HMGB4_MOUSE RecName: Full=High mobility group protein B4
gi|38174595|gb|AAH61030.1| High-mobility group box 4 [Mus musculus]
gi|148698295|gb|EDL30242.1| high-mobility group box 4 [Mus musculus]
Length = 181
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P++PP++F LF D K+ +PD V VAK AG+ W + EKKPY KAA
Sbjct: 89 DPKAPRKPPSSFLLFSRDHYAMLKQENPDW-TVVQVAKAAGKMWSTTDEAEKKPYEQKAA 147
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVE 192
++A Y + E N+ + + N +E
Sbjct: 148 LMRAKYFEEQEAYR--NQCQGRKGNFLE 173
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLD 161
+ D +PK +++ FM +FR ++KE P++ G +++ EKW++++ EK Y +
Sbjct: 3 EKDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY-E 61
Query: 162 KAAEL-KADYSKAM 174
AEL KA Y + M
Sbjct: 62 ALAELDKARYQQEM 75
>gi|157831385|pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
gi|157831386|pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 79
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K+PY
Sbjct: 3 PKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 52
>gi|291415373|ref|XP_002723927.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE + ++K+PY KAA+L
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMRSEHSAKDKQPYEQKAAKL 175
Query: 167 KADYSK 172
K Y K
Sbjct: 176 KEKYEK 181
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 29 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 88
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 89 KSEKARYDREM 99
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
K+ D N PKRPP+AFF+F + R K +P G+ +AK+ G W T ++K P+
Sbjct: 89 KRKKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKLPHE 147
Query: 161 DKAAELKADYSK 172
KA +LK Y K
Sbjct: 148 AKATKLKEKYEK 159
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKPK +++ F+ R+E+K+ HP S + +K+ E+W+ M+ +EK + D A
Sbjct: 5 DPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMSAKEKVKFEDMA 64
Query: 164 AELKADYSKAMEG 176
K Y K M+G
Sbjct: 65 KGDKVRYDKDMKG 77
>gi|170106119|ref|XP_001884271.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640617|gb|EDR04881.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 597
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP +++ L+ ++ RKE KE HP+ + E+WKNMT EEK Y +
Sbjct: 134 DPNAPKRPASSYILYQNNVRKELKEQHPEMNNA-DLLTMISEQWKNMTTEEKDKYNQENK 192
Query: 165 ELKADYS 171
L YS
Sbjct: 193 VLTQQYS 199
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDEEKK 157
+K+ D N PKRPP+AFFLF + R + K +P G+T AK+ GE W + T EEK+
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCAELRPKVKSENP---GLTIGDTAKKLGEMWNSKTAEEKQ 141
Query: 158 PYLDKAAELKADYSK 172
PY KAA+LK Y K
Sbjct: 142 PYEKKAAKLKEKYDK 156
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S +K+ E+WK M+ +EK + D A
Sbjct: 4 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDMA 63
Query: 164 AELKADYSKAM 174
+ K Y + M
Sbjct: 64 KQDKVRYEREM 74
>gi|118792222|ref|XP_001238271.1| AGAP012334-PA [Anopheles gambiae str. PEST]
gi|116116797|gb|EAU75768.1| AGAP012334-PA [Anopheles gambiae str. PEST]
Length = 111
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KPKRP +A+ L+++ R++ K+ +P K VT +AK+ GE W+ M D+ + Y KAA++K
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKKGGELWRGMKDKSEWEY--KAAKMK 60
Query: 168 ADYSKAME 175
+Y+K M+
Sbjct: 61 DEYNKQMQ 68
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
AKR +K D NKPKR +A+ F+ D+R+ K +PD+ V + G KW+ M+ E
Sbjct: 13 AKRGKK---DPNKPKRALSAYMFFVQDWRERIKSENPDA-DFGSVGRLLGAKWQEMSASE 68
Query: 156 KKPYLDKAAELKADYSKAMEGNGDYN 181
KKPY DKA +AD +A + +Y+
Sbjct: 69 KKPYEDKA---QADKDRAAKEKAEYD 91
>gi|12838247|dbj|BAB24141.1| unnamed protein product [Mus musculus]
Length = 181
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D P++PP++F LF D K+ +PD V VAK AG+ W + EKKPY KAA
Sbjct: 89 DPKAPRKPPSSFLLFSRDHYAMLKQENPDW-TVVQVAKAAGKMWSTTDEAEKKPYEQKAA 147
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEVE 192
++A Y + E N+ + + N +E
Sbjct: 148 LMRAKYFEEQEAYR--NQCQGRKGNFLE 173
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLD 161
+ D +PK +++ FM +FR ++KE P++ G +++ EKW++++ EK Y
Sbjct: 3 EKDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 162 KAAELKADYSKAM 174
A KA Y + M
Sbjct: 63 LAEHDKARYQQEM 75
>gi|344235657|gb|EGV91760.1| hypothetical protein I79_006916 [Cricetulus griseus]
Length = 139
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKP 158
+KK D N PKRPP+AFFLF ++R + K HP + VAK+ GE W N ++K+P
Sbjct: 12 KKKFKDPNAPKRPPSAFFLFCSEYRPKTK-GHP-GLSIGDVAKKLGETWSNTAADDKQP 68
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+KK D N PKRPP AFFLF ++ + + HP + VAK+ GE W N ++ +PY
Sbjct: 35 KKKFKDPNAPKRPPLAFFLFCSEYHPKIRGEHPGLY-IGDVAKKLGEMWTNTAADDTQPY 93
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 94 EKKAAKLKEKYEK 106
>gi|443897201|dbj|GAC74542.1| putative N2 [Pseudozyma antarctica T-34]
Length = 1388
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 14 KRVDAQSASTSSATLMRGRD-GSAFARCEECNKNVPVALISMHSCSLDAKIKMNLEAQVV 72
+++ AQS +D G +A E K H SL+AK E ++
Sbjct: 1220 QKIKAQSPDERLNVAHVAKDAGQRYAALPESKKQ------EFHRRSLEAK--ELWEQEMA 1271
Query: 73 EKPAEINKKKPAERKKPTSTEPRAKRLRKKD-SDSNKPKRPPTAFFLFMDDFRKEYKEAH 131
+ A++ + + S + +A + RK + D N PK+P +A+FLF+ R +
Sbjct: 1272 DWKAKLTPEDIRQENLYRSAQRKAGKSRKGNLKDPNAPKKPLSAYFLFLRAIRADPNMTQ 1331
Query: 132 PDSKGVTGVAKE---AGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+G K+ A KW+++++ EK+PYLD+A KA Y +
Sbjct: 1332 AVFEGEQETTKQSVLAAAKWRSLSETEKQPYLDRAEADKARYER 1375
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 64 KMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKD--------SDSNKPKRPPTA 115
K + + + P +K P + +P + AK+ +K+D S PK+ P+A
Sbjct: 1151 KASKKGASADAPKAKSKAHPYAQPEPAADTKPAKKQKKEDPPKPSALKSRLKPPKQAPSA 1210
Query: 116 FFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAM 174
+ +F + ++ K PD + V VAK+AG+++ + + +K+ + ++ E K + + M
Sbjct: 1211 WQIFFTEELQKIKAQSPDERLNVAHVAKDAGQRYAALPESKKQEFHRRSLEAKELWEQEM 1270
>gi|392876742|gb|AFM87203.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY + A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEEGGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|384499401|gb|EIE89892.1| hypothetical protein RO3G_14603 [Rhizopus delemar RA 99-880]
Length = 352
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
A+R++KK PK P +A+ ++ + R + ++ P S V ++K EKW MTDEE
Sbjct: 188 ARRVKKKIKSPGIPKHPLSAYMWYLTEVRPKTMKSFPSS-NVGQISKYCAEKWHTMTDEE 246
Query: 156 KKPYLDKAAELKADYSKAMEGNGDYNEVE 184
+ P+ KA K Y++ M+ N+ E
Sbjct: 247 RAPWKTKAQVDKERYAREMQLYAIQNDHE 275
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 105 DSNKP---KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
D+N P RPP A+ LF R+ K+ P + V ++K+ E+W+ M+ EEK+ Y++
Sbjct: 87 DANAPIRVTRPPNAYLLFNKKMRRVLKDQDP-TMNVGEISKQIAERWRKMSKEEKEMYVN 145
Query: 162 KAAELKADYSKAMEGNGDY 180
+A LK + +A+ N Y
Sbjct: 146 EANRLKQE-QRALHPNSMY 163
>gi|296317265|ref|NP_001171733.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 215
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKR + FFLF + R E K+ HP+ GV VAK GE+WKN++ +K Y +AA
Sbjct: 95 DPDAPKRNLSPFFLFCNVKRAEVKKVHPNW-GVGDVAKALGEQWKNVSAADKAKYEKEAA 153
Query: 165 ELKADYSKAMEG 176
+ K Y K ME
Sbjct: 154 KEKIRYEKDMEA 165
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDEEKKPYL 160
K + +KPK +A+ F+ R+E+K+ HP V +K+ E+WK MTD+EKK +
Sbjct: 3 KKGNPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTDKEKKVFH 62
Query: 161 DKAAELKADYSKAME 175
D A + K Y+ ME
Sbjct: 63 DMADKDKERYNTEME 77
>gi|221502212|gb|EEE27950.1| HMG box domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 177
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D N P+R +AF F + R E A+P+ K +T V K GE W +T EE+KP+ +KA
Sbjct: 100 DPNAPRRALSAFMFFAKEKRTEIVAANPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 159
Query: 164 AELKADY 170
A+ KA Y
Sbjct: 160 AQDKARY 166
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
+ D NKPK+P +++FLF D RK E HP T V KW + +EEK+ Y K
Sbjct: 370 NVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNST-VTAHITLKWMELGEEEKQVYNSK 428
Query: 163 AAELKADYSKAMEGNGDYN 181
AA L Y K +E +YN
Sbjct: 429 AAALMEAYKKEVE---EYN 444
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPK+P +A+ ++ ++ R K ++K V VAK GE+WKN+++E+K PY A
Sbjct: 246 DPLKPKQPISAYLIYANERRAALK---GENKSVIEVAKITGEEWKNLSEEQKAPYDKMAK 302
Query: 165 ELKADYSKAMEG 176
+ K Y + MEG
Sbjct: 303 KNKEIYLQEMEG 314
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDS--KGVTGVAKEAGEKWKNMTDEEKKPYLDK 162
KRP T + L+ D E K+ +PD+ K + + G KWK ++ EEKKPY +K
Sbjct: 134 KRPSTPYILWCKDNWNEVKKQNPDADFKETSNIL---GAKWKGISAEEKKPYEEK 185
>gi|395821450|ref|XP_003784053.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 221
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTHIPPKGE-TKKKFKDPNVPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGEVAKKL 129
Query: 145 GEKWKN 150
GE W N
Sbjct: 130 GEMWSN 135
>gi|221481732|gb|EEE20108.1| HMG box domain-containing protein, putative [Toxoplasma gondii GT1]
Length = 177
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D N P+R +AF F + R E A+P+ K +T V K GE W +T EE+KP+ +KA
Sbjct: 100 DPNAPRRALSAFMFFAKEKRTEIVAANPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 159
Query: 164 AELKADY 170
A+ KA Y
Sbjct: 160 AQDKARY 166
>gi|443710428|gb|ELU04681.1| hypothetical protein CAPTEDRAFT_155070 [Capitella teleta]
Length = 269
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
R RK+ D+N PK+P T + F+ D R++ +E +P S T + K G +W + EK+
Sbjct: 15 RKRKRVHDANAPKQPLTGYVRFLSDRREQIREENP-SATFTEITKRLGAEWSKLPPMEKQ 73
Query: 158 PYLDKAAELKADYSKAMEGNGDYNEVE 184
YLD+A K Y K +E Y++ E
Sbjct: 74 RYLDEAERDKERYLKELEA---YHQTE 97
>gi|383854854|ref|XP_003702935.1| PREDICTED: high mobility group protein 20A-like [Megachile
rotundata]
Length = 329
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 90 TSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWK 149
T+T RAK+ +K D+ PK+P T +F F++D R++ + +P + + K +W
Sbjct: 64 TNTTNRAKKRKKTPRDATAPKQPLTGYFRFLNDRREKVRNENP-TLSFAEITKLLASEWS 122
Query: 150 NMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGD 209
N+ ++K+ YLD A + K Y++ DY + E + +E + E++ E+ D
Sbjct: 123 NLPADQKQQYLDAAEQDKERYNREF---SDYKQTEAYRLFSEKQSSEKQQENRKERNGTD 179
Query: 210 EGGSEKDVAE 219
+ D+ +
Sbjct: 180 VTSEQNDLQQ 189
>gi|207343448|gb|EDZ70902.1| YKL032Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 589
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 335 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 391
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 392 RWKELTDDQKKPFYE---EFRTNWEK 414
>gi|392881260|gb|AFM89462.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
RPP+AFF+F D R + +P + V K+ GE W +T ++KKPY ++ A+LK Y
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVTKKMGELWSGLTAKDKKPYEERGAQLKEKY 154
Query: 171 SK 172
K
Sbjct: 155 EK 156
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|398364635|ref|NP_012893.3| Ixr1p [Saccharomyces cerevisiae S288c]
gi|547746|sp|P33417.2|IXR1_YEAST RecName: Full=Intrastrand cross-link recognition protein; AltName:
Full=Structure-specific recognition protein; Short=SSRP
gi|486034|emb|CAA81867.1| IXR1 [Saccharomyces cerevisiae]
gi|4467991|emb|CAB37853.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285813227|tpg|DAA09124.1| TPA: Ixr1p [Saccharomyces cerevisiae S288c]
gi|392298106|gb|EIW09204.1| Ixr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 597
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 341 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 397
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 398 RWKELTDDQKKPFYE---EFRTNWEK 420
>gi|361130747|gb|EHL02497.1| putative High mobility group protein 20A [Glarea lozoyensis 74030]
Length = 267
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R +D N P+RPP+A+ +F + R+E K + T +AK GE W+N+ EK+PY
Sbjct: 136 RHPKADENCPERPPSAYVIFSNKMREELKG---RNLSFTEIAKLVGENWQNLAPAEKEPY 192
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDEG 211
+A K Y NG+ E + A + ++ A+ VE KA + + +G
Sbjct: 193 EQQAFSAKERY------NGELAEYKKTA--KYQEYAQYLVEFKARQANQQQG 236
>gi|349579530|dbj|GAA24692.1| K7_Ixr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 598
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 342 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 398
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 399 RWKELTDDQKKPFYE---EFRTNWEK 421
>gi|259147804|emb|CAY81054.1| Ixr1p [Saccharomyces cerevisiae EC1118]
Length = 598
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 342 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 398
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 399 RWKELTDDQKKPFYE---EFRTNWEK 421
>gi|392587353|gb|EIW76687.1| high mobility group box, partial [Coniophora puteana RWD-64-598
SS2]
Length = 67
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 109 PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
PKRP +A+ F D+R+ K +PD+ G V K G KWK + +EEKKPY++ AA
Sbjct: 1 PKRPLSAYMFFSQDWRERIKTENPDA-GFGEVGKLLGAKWKELDEEEKKPYVEMAA 55
>gi|323332798|gb|EGA74203.1| Ixr1p [Saccharomyces cerevisiae AWRI796]
Length = 588
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 335 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 391
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 392 RWKELTDDQKKPFYE---EFRTNWEK 414
>gi|156386222|ref|XP_001633812.1| predicted protein [Nematostella vectensis]
gi|156220887|gb|EDO41749.1| predicted protein [Nematostella vectensis]
Length = 264
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 114 TAFFLFMDDFRKEYK-EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
TA+FLF+ FRKE +A D K + +A GE+W+ M+DE+KKPY + AE + Y K
Sbjct: 150 TAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWREMSDEDKKPYTIQEAEERNKYEK 206
Query: 173 AME 175
ME
Sbjct: 207 VME 209
>gi|365764630|gb|EHN06152.1| Ixr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 591
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 335 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 391
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 392 RWKELTDDQKKPFYE---EFRTNWEK 414
>gi|311109|gb|AAA02859.1| intrastrand crosslink recognition protein [Saccharomyces
cerevisiae]
Length = 591
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 335 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 391
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 392 RWKELTDDQKKPFYE---EFRTNWEK 414
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP AFF F ++ + K HP + VAK+
Sbjct: 39 EREMKTYIPPKGE-TKKKFKDPNAPKRPPLAFFFFCSEYCPKIKGEHPGL-SIGDVAKKL 96
Query: 145 GEKWKNMTDEEKKPY 159
GE W N +K+PY
Sbjct: 97 GEMWNNTAAGDKQPY 111
>gi|255073265|ref|XP_002500307.1| set domain protein [Micromonas sp. RCC299]
gi|226515569|gb|ACO61565.1| set domain protein [Micromonas sp. RCC299]
Length = 1496
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKA 168
KRP TAFF+F + R E P+ + ++ V K GE+W+ ++DEEK PY KA E +
Sbjct: 674 KRPMTAFFIFSQEQRALLIEQRPELRTNISAVGKLMGERWRKLSDEEKFPYAIKAEEARH 733
Query: 169 DY 170
+Y
Sbjct: 734 EY 735
>gi|164661201|ref|XP_001731723.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
gi|159105624|gb|EDP44509.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
Length = 97
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
K+PT R K D PKRP +A+ F D+R K V V + G
Sbjct: 3 KQPTPKVTTGTRRTKAKKDPAAPKRPLSAYMFFSQDWRDASKPRTLTQDSVCDVGRLLGT 62
Query: 147 KWKNMTDEEKKPYLDKAA 164
KWK M+DEEKKPY++ A+
Sbjct: 63 KWKEMSDEEKKPYVEMAS 80
>gi|401624856|gb|EJS42895.1| ixr1p [Saccharomyces arboricola H-6]
Length = 613
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 357 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 413
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 414 RWKELTDDQKKPFYE---EFRTNWEK 436
>gi|256272450|gb|EEU07431.1| Ixr1p [Saccharomyces cerevisiae JAY291]
Length = 583
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 326 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 382
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDK--------AENE 198
+WK +TD++KKP+ + E + ++ K Y V D + + K E
Sbjct: 383 RWKELTDDQKKPFYE---EFRTNWEK-------YRVVRDAYEKTLPPKRPSGPFIQFTQE 432
Query: 199 VEDKAEKEDGDEGGSE--KDVAEK 220
+ KE+ D+G E K + E+
Sbjct: 433 IRPTVVKENPDKGLIEITKIIGER 456
>gi|237832349|ref|XP_002365472.1| HMG box domain-containing protein [Toxoplasma gondii ME49]
gi|211963136|gb|EEA98331.1| HMG box domain-containing protein [Toxoplasma gondii ME49]
Length = 98
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D N P+R +AF F + R E A+P+ K +T V K GE W +T EE+KP+ +KA
Sbjct: 21 DPNAPRRALSAFMFFAKEKRTEIVAANPELKSQMTKVGKMVGEAWGKLTPEERKPFEEKA 80
Query: 164 AELKADY 170
A+ KA Y
Sbjct: 81 AQDKARY 87
>gi|172088041|ref|NP_001116481.1| transcription factor SOX-6 [Danio rerio]
gi|170786294|gb|ACB38138.1| SRY-box containing protein 6 [Danio rerio]
Length = 768
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 90 TSTEPRAKRLRKKDSDSNKP--KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEK 147
++TE R R + +SN+P KRP AF ++ D R++ +A PD + ++K G +
Sbjct: 539 STTEARVYR-EPRGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSR 596
Query: 148 WKNMTDEEKKPYLDKAAEL 166
WK+MT++EK+PY ++ A L
Sbjct: 597 WKSMTNQEKQPYYEEQARL 615
>gi|358337868|dbj|GAA37121.2| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 378
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
D PKR +AFF F D FR + + HPD K V+ +AKE G +W+ TD+EK
Sbjct: 101 DPAMPKRSWSAFFFFCDAFRSKIRNEHPDWK-VSDIAKELGRRWEECTDKEK 151
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDEEKKPY 159
D N+PK P +A+ F+ R+E+++ HP+ + +K+ EKWK M++E+++ +
Sbjct: 11 DKNRPKHPMSAYACFVQVIREEHRKKHPNENVIFSEFSKKCAEKWKQMSNEQRRCF 66
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D N PKRP +AF F D R+E +P+ K + V K GE W ++D +KKPY KA
Sbjct: 16 DPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPYESKA 75
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 76 VADKARYEREM 86
>gi|85719123|dbj|BAE78525.1| sox-lz [Danio rerio]
Length = 686
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 90 TSTEPRAKRLRKKDSDSNKP--KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEK 147
++TE R R + +SN+P KRP AF ++ D R++ +A PD + ++K G +
Sbjct: 464 STTEARVYR-EPRGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSR 521
Query: 148 WKNMTDEEKKPYLDKAAEL 166
WK+MT++EK+PY ++ A L
Sbjct: 522 WKSMTNQEKQPYYEEQARL 540
>gi|323347802|gb|EGA82066.1| Ixr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 592
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 336 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 392
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 393 RWKELTDDQKKPFYE---EFRTNWEK 415
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
DSNKPKRP TAF L++ + R++ K +P K VT +AK+ GE WK + D+ K + + A+
Sbjct: 557 DSNKPKRPTTAFMLWLSETREQIKRDNPGIK-VTEIAKKGGEMWKELKDKSK--WEELAS 613
Query: 165 ELKADYSKAM 174
+ K Y AM
Sbjct: 614 KDKQRYQDAM 623
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
+K+ D N PKRPP+AFF+F D+R + K +P + +AK+ GE W + + E K+PY
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGL-SIGDIAKKLGEMWNSSSAEVKQPY 143
Query: 160 LDKAAELKADYSK 172
KAA+LK Y K
Sbjct: 144 EKKAAKLKEKYDK 156
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP+ S + +K+ E+WK M+ +EK + D A
Sbjct: 4 DPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 164 AELKADYSKAME 175
+ K Y + M+
Sbjct: 64 KQDKVRYEREMK 75
>gi|383858168|ref|XP_003704574.1| PREDICTED: putative high mobility group protein 1-like 10-like
[Megachile rotundata]
Length = 202
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 72 VEKPAEINKKKPAERKKPTS---TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
+E A NKK + T TE +R K+ D + PKR +AFF F + R + +
Sbjct: 80 LEDGAHCNKKMYYYDRHYTGHEETERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMR 139
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
E HP+ GV +AKE G+ W + + K Y+ A E +A Y +
Sbjct: 140 ELHPE-MGVGDIAKELGKLWMSTDLQTKSKYMAIAEEDRARYER 182
>gi|355757722|gb|EHH61247.1| hypothetical protein EGM_19210, partial [Macaca fascicularis]
Length = 185
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYL 160
KK +DSN KRPP+ FFLF +F + K +P G++ G+ K + + EK+PY+
Sbjct: 85 KKKNDSNTFKRPPSGFFLFCSEFHPKIKSTNP---GIS-----IGDVTKKLGEIEKQPYI 136
Query: 161 DKAAELKADYSK 172
KAA+LK +Y K
Sbjct: 137 IKAAKLKEEYEK 148
>gi|351698366|gb|EHB01285.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 211
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRP +AFFLF + R + K HP + AKE G+ W + ++K+PY K A+L
Sbjct: 94 NAPKRPSSAFFLFCCEHRPKIKSEHPGL-SIGDTAKELGKMWSEQSAKDKQPYEQKVAKL 152
Query: 167 KADYSK 172
K Y K
Sbjct: 153 KEKYEK 158
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ + R+E+K+ HPDS +K+ E+WK M+ +EK + D
Sbjct: 5 DPNKPRGKMSSYAFFVQNCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMP 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KSYKTRYDREM 75
>gi|151941513|gb|EDN59876.1| intrastrand crosslink recognition protein [Saccharomyces cerevisiae
YJM789]
Length = 597
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE 146
KK +ST+ R +R +K PKRP +A+FLF R E + P++K V ++K A
Sbjct: 341 KKLSSTQSRIER--RKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLASA 397
Query: 147 KWKNMTDEEKKPYLDKAAELKADYSK 172
+WK +TD++KKP+ + E + ++ K
Sbjct: 398 RWKELTDDQKKPFYE---EFRTNWEK 420
>gi|380025634|ref|XP_003696574.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Apis florea]
Length = 202
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 72 VEKPAEINKKKPAERKKPTS---TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
+E A NKK + T TE +R K+ D + PKR +AFF F + R + +
Sbjct: 80 LEDGAHCNKKMYYYDRHYTGHEETERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMR 139
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
E HP+ GV +AKE G+ W + + K Y+ A E +A Y +
Sbjct: 140 ELHPEM-GVGDIAKELGKLWMSTDLQTKSKYMAIAEEDRARYER 182
>gi|328790254|ref|XP_624266.2| PREDICTED: putative high mobility group protein B1-like 1-like
[Apis mellifera]
Length = 202
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 72 VEKPAEINKKKPAERKKPTS---TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
+E A NKK + T TE +R K+ D + PKR +AFF F + R + +
Sbjct: 80 LEDGAHCNKKMYYYDRHYTGHEETERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMR 139
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
E HP+ GV +AKE G+ W + + K Y+ A E +A Y +
Sbjct: 140 ELHPEM-GVGDIAKELGKLWMSTDLQTKSKYMAIAEEDRARYER 182
>gi|109469081|ref|XP_001074673.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346414|ref|XP_002726304.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392346830|ref|XP_003749644.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AF LF ++R + K HP + + V K+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNAPKRPPSAF-LFCSEYRPKIKGEHP-ALSIGDVTKKL 128
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W N ++K+P AA+LK Y K
Sbjct: 129 GEVWTNTASDDKQPCEKMAAKLKEKYEK 156
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMA 64
Query: 164 AELKADYSKAME 175
KA Y + M+
Sbjct: 65 KADKARYEREMK 76
>gi|302767286|ref|XP_002967063.1| hypothetical protein SELMODRAFT_144662 [Selaginella moellendorffii]
gi|300165054|gb|EFJ31662.1| hypothetical protein SELMODRAFT_144662 [Selaginella moellendorffii]
Length = 430
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 79 NKKKPAERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT 138
K+K E KK E ++ + K ++ KPK+ TA+ LF ++RK+ + P +K
Sbjct: 317 QKEKEDEVKKAMKAEKAPRKAKAKTAEPGKPKKAATAYILFGMEYRKKLQAEMPTAKFAE 376
Query: 139 GVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175
A A KW M EEK+PY+D+A K Y +AME
Sbjct: 377 LTALVAS-KWNEMGAEEKQPYVDQAGVEKQKYQEAME 412
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
K+P +++FL+ +D R++ + +P++ G+ ++ GE WK+++DEEKKPY
Sbjct: 105 KKPLSSYFLWCNDQREKVRAQNPNA-GIKDLSSIFGELWKSVSDEEKKPY 153
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFF+F +FR + K P + VAK GE W + E+K+PY KAA
Sbjct: 91 DPNAPKRPPSAFFIFCSEFRPKVKGESP-GLSIGDVAKRLGEMWNSTAAEDKQPYEKKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D KP+ +++ F+ R+E+K+ HP+ S +K+ E+WK M+ +EK + D A
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 164 AELKADYSKAM 174
+ KA Y + M
Sbjct: 64 RQDKARYEREM 74
>gi|255936601|ref|XP_002559327.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583947|emb|CAP91971.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 108
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWKNMTDE 154
KR++++ D N PKR +A+ F +D R + +E +P G++ V K+ G+KWK +++
Sbjct: 16 KRVQRRKKDPNAPKRGLSAYMFFANDNRDKVREENP---GISFGQVGKQLGDKWKALSET 72
Query: 155 EKKPYLDKAAELKADY 170
++KPY DKAA K Y
Sbjct: 73 DRKPYDDKAAADKKRY 88
>gi|51339|emb|CAA47900.1| high mobility group 2 protein [Mus musculus]
Length = 205
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AF LF + R + K +P + AK+ GE W + +EK+PY KAA+L
Sbjct: 93 NAPKRPPSAFCLFCSENRPKIKIEYPGL-SIGDTAKKLGEMWSEQSAKEKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
>gi|24657271|ref|NP_726106.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|24657274|ref|NP_726107.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|194882002|ref|XP_001975102.1| GG20749 [Drosophila erecta]
gi|195346531|ref|XP_002039811.1| GM15692 [Drosophila sechellia]
gi|195486382|ref|XP_002091485.1| HmgZ [Drosophila yakuba]
gi|195585528|ref|XP_002082533.1| GD25171 [Drosophila simulans]
gi|729741|sp|Q06943.1|HMGZ_DROME RecName: Full=High mobility group protein Z; Short=HMG-Z
gi|296945|emb|CAA50469.1| Hmg-Z protein [Drosophila melanogaster]
gi|7291329|gb|AAF46758.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|21064429|gb|AAM29444.1| RE28596p [Drosophila melanogaster]
gi|21645314|gb|AAM70934.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|190658289|gb|EDV55502.1| GG20749 [Drosophila erecta]
gi|194135160|gb|EDW56676.1| GM15692 [Drosophila sechellia]
gi|194177586|gb|EDW91197.1| HmgZ [Drosophila yakuba]
gi|194194542|gb|EDX08118.1| GD25171 [Drosophila simulans]
gi|220948296|gb|ACL86691.1| HmgZ-PA [synthetic construct]
Length = 111
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
++PKRP +A+ L++++ R++ K+ +P SK VT +AK GE W+ + D K + KA +
Sbjct: 3 GDRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD--KTEWEQKAIK 59
Query: 166 LKADYSKAM---EGNG 178
+K +Y+KA+ E NG
Sbjct: 60 MKEEYNKAVKEYEANG 75
>gi|409075858|gb|EKM76234.1| hypothetical protein AGABI1DRAFT_16670, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426193694|gb|EKV43627.1| hypothetical protein AGABI2DRAFT_56560, partial [Agaricus bisporus
var. bisporus H97]
Length = 106
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK D PKR +A+ F D+R+ K +P++ G V K G KWK M +EEKKPY
Sbjct: 14 RKSKKDPKAPKRALSAYMFFSQDWRERIKTENPEA-GFGEVGKLLGAKWKEMDEEEKKPY 72
Query: 160 LDKAAELKADYSKAMEGNGDYNEVEDKA--DNEVED 193
+++A AD ++A + Y+ + A D+E ED
Sbjct: 73 VEQAT---ADKTRAEKEKASYDSGKKSASGDDEEED 105
>gi|440799045|gb|ELR20106.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 143
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 95 RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDE 154
RA + KK+ D N PKR TA+ +F + R K +P+ G + K +KWK ++D+
Sbjct: 39 RATKKGKKEKDPNAPKRAKTAYIIFATEERPRAKADNPEL-GFGDLTKCVSDKWKALSDD 97
Query: 155 EKKPYLDKAAELKADYS 171
EK PYL+KAA+ K Y+
Sbjct: 98 EKAPYLEKAAQDKERYA 114
>gi|145233003|ref|XP_001399874.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|317026969|ref|XP_003188583.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|134056796|emb|CAK37704.1| unnamed protein product [Aspergillus niger]
gi|350634700|gb|EHA23062.1| hypothetical protein ASPNIDRAFT_206990 [Aspergillus niger ATCC
1015]
Length = 103
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 92 TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEAGEKWK 149
T+PR RKKD N PKR +A+ F +D R++ +E +P G++ V K GE+WK
Sbjct: 10 TKPRGTERRKKDP--NAPKRGLSAYMFFANDNREKVREENP---GISFGQVGKMLGERWK 64
Query: 150 NMTDEEKKPYLDKAAELKADY 170
++D +++PY +KAA K Y
Sbjct: 65 ALSDTDRRPYEEKAAADKKRY 85
>gi|238486744|ref|XP_002374610.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
gi|317144043|ref|XP_003189559.1| non-histone chromosomal protein 6 [Aspergillus oryzae RIB40]
gi|220699489|gb|EED55828.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
Length = 104
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 87 KKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVT--GVAKEA 144
K+ T+ + + R+ +K D N PKR +A+ F +D R++ +E +P G++ V K
Sbjct: 3 KEKTTRKTKGTRVERKKKDPNAPKRGLSAYMFFANDNREKVREENP---GISFGQVGKML 59
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADY 170
GEKWK +++ +++PY DKAA K Y
Sbjct: 60 GEKWKALSEADRRPYEDKAAADKKRY 85
>gi|308470865|ref|XP_003097665.1| hypothetical protein CRE_14849 [Caenorhabditis remanei]
gi|308239966|gb|EFO83918.1| hypothetical protein CRE_14849 [Caenorhabditis remanei]
Length = 271
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
RL+KKD KRP AF ++ R++ +++PD T ++K G++WK M+D++KK
Sbjct: 139 RLKKKDHV----KRPLNAFMIWSRQERRKITDSYPDCHNST-ISKLLGQRWKEMSDDQKK 193
Query: 158 PYLDKAAELK 167
PY D+ LK
Sbjct: 194 PYFDEQEHLK 203
>gi|291414887|ref|XP_002723687.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 209
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + R + K HP + AK+ GE + ++K+PY KAA+L
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMRSEHSAKDKQPYEQKAAKL 151
Query: 167 KADYSK 172
K Y K
Sbjct: 152 KEKYEK 157
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D NKP+ +++ F+ R+E+K+ HPDS +K+ E+WK M+ +EK + D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 164 AELKADYSKAM 174
KA Y + M
Sbjct: 65 KSDKARYDREM 75
>gi|358055220|dbj|GAA98989.1| hypothetical protein E5Q_05678 [Mixia osmundae IAM 14324]
Length = 327
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGE-------KWKNMTDEEKK 157
D + PKRP TAFFLF+ R + P S G+ + + E +WK M+D EK+
Sbjct: 246 DPDAPKRPSTAFFLFLTRGRND-----PSSVGLQSLPGKTTEQTVVLAGRWKEMSDAEKE 300
Query: 158 PYLDKAAELKADYSKA 173
PY+ A L+ +Y +A
Sbjct: 301 PYVSDALRLREEYKQA 316
>gi|391344136|ref|XP_003746359.1| PREDICTED: high mobility group protein DSP1-like isoform 3
[Metaseiulus occidentalis]
Length = 202
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
PR K RKK D N PKR +AFF F D R + K +S V VAKE G KW++ TD
Sbjct: 97 PRGKAARKK-KDPNAPKRALSAFFHFCQDERPKVKATLGES-TVAEVAKELGRKWQDCTD 154
Query: 154 EEKKPYLDKAAELKADYSKAM 174
E+K Y AA+ K Y + M
Sbjct: 155 EQKGKYEQLAAKDKQRYEREM 175
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTG-VAKEAGEKWKNMTDEEK 156
+L K + +KP+ +A+ F+ R+E+K+ HP+ V +K+ E+WK M + EK
Sbjct: 11 KLELKMAKGDKPRGRMSAYAYFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMNEPEK 70
Query: 157 KPYLDKAAELKADYSKAM 174
+ + AA+ K Y M
Sbjct: 71 QRFHLMAAKDKKRYENEM 88
>gi|308452124|ref|XP_003088923.1| hypothetical protein CRE_02753 [Caenorhabditis remanei]
gi|308244305|gb|EFO88257.1| hypothetical protein CRE_02753 [Caenorhabditis remanei]
Length = 262
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKK 157
RL+KKD KRP AF ++ R++ +++PD T ++K G++WK M+D++KK
Sbjct: 124 RLKKKDHV----KRPLNAFMIWSRQERRKITDSYPDCHNST-ISKLLGQRWKEMSDDQKK 178
Query: 158 PYLDKAAELK 167
PY D+ LK
Sbjct: 179 PYFDEQEHLK 188
>gi|346327301|gb|EGX96897.1| High mobility group, superfamily [Cordyceps militaris CM01]
Length = 513
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 89 PTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKW 148
PTS + K R SD N P+RPP+A+ LF + R++ K + T +AK GE W
Sbjct: 99 PTSGVTKRKYRRHPKSDENAPERPPSAYVLFSNKMREDLKS---HNLSFTEIAKLVGENW 155
Query: 149 KNMTDEEKKPYLDKAAELKADYSKAM 174
+N+ E++ Y ++A K Y +++
Sbjct: 156 QNLDQGERELYENQANAAKDKYRRSL 181
>gi|157129265|ref|XP_001655340.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129267|ref|XP_001655341.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129269|ref|XP_001655342.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129271|ref|XP_001655343.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|94468770|gb|ABF18234.1| nucleosome-binding factor SPN POB3 subunit [Aedes aegypti]
gi|108872275|gb|EAT36500.1| AAEL011414-PC [Aedes aegypti]
gi|108872276|gb|EAT36501.1| AAEL011414-PD [Aedes aegypti]
gi|108872277|gb|EAT36502.1| AAEL011414-PA [Aedes aegypti]
gi|108872278|gb|EAT36503.1| AAEL011414-PB [Aedes aegypti]
Length = 112
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KPKRP +A+ L+++ R++ K+ +P K VT +AK GE W+ M D K + +KAA++K
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKRGGELWRAMKD--KSEWENKAAKMK 60
Query: 168 ADYSKAME 175
+Y+KA++
Sbjct: 61 DEYNKAVQ 68
>gi|340724328|ref|XP_003400534.1| PREDICTED: high mobility group protein 20A-like [Bombus terrestris]
Length = 329
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 91 STEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKN 150
+T RAK+ +K D+ PK+P T +F F++D R++ + +P + + K +W
Sbjct: 65 NTTNRAKKRKKVPRDATAPKQPLTGYFRFLNDRREKVRTENP-TLSFAEITKLLASEWST 123
Query: 151 MTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVEDKADNEVEDKAENEVEDKAEKEDGDE 210
+ ++K+ YLD A + K Y++ DY + E + +E + E+K E+
Sbjct: 124 LPADQKQQYLDAAEQDKERYNREF---SDYKQTEAYRLFSEKQSSEKQQENKKER----- 175
Query: 211 GGSEKDVAEKEVQQDEEN 228
G++ + + ++QQD++N
Sbjct: 176 NGTDINSEQNDIQQDKDN 193
>gi|443897570|dbj|GAC74910.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 280
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPKRP +AFF F++D R + P+ +T +K GE+WK MT ++K PY +A
Sbjct: 204 DPAKPKRPNSAFFEFLNDLRAS-ESVIPN---ITEFSKRGGERWKQMTPDQKAPYEQRAL 259
Query: 165 ELKADYSKAME 175
+ Y + +E
Sbjct: 260 QALEQYKRDLE 270
>gi|391344132|ref|XP_003746357.1| PREDICTED: high mobility group protein DSP1-like isoform 1
[Metaseiulus occidentalis]
gi|391344134|ref|XP_003746358.1| PREDICTED: high mobility group protein DSP1-like isoform 2
[Metaseiulus occidentalis]
Length = 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
PR K RKK D N PKR +AFF F D R + K +S V VAKE G KW++ TD
Sbjct: 82 PRGKAARKK-KDPNAPKRALSAFFHFCQDERPKVKATLGES-TVAEVAKELGRKWQDCTD 139
Query: 154 EEKKPYLDKAAELKADYSKAM 174
E+K Y AA+ K Y + M
Sbjct: 140 EQKGKYEQLAAKDKQRYEREM 160
>gi|407262070|ref|XP_003945989.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N PKRPP+AFFLF +R + K HP + VAK+
Sbjct: 72 EREMKTYIPPK-RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKR 129
Query: 145 GEKWKNMTDEEKK 157
GE W N ++K+
Sbjct: 130 GEMWNNTAADDKQ 142
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ R+E+K+ HPD S + +K+ E+WK M+ +EK + D A KA Y +
Sbjct: 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAIADKARYER 73
Query: 173 AME 175
M+
Sbjct: 74 EMK 76
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D + PKRPP+AFFLF ++ + K HP + V K+
Sbjct: 59 ERQMKTYIPPKGE-TKKKFKDPSAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVVKKL 116
Query: 145 GEKWKNMTDEEKKPYLDKAAELKADYSK 172
GE W + ++K+PY KAA+LK Y K
Sbjct: 117 GEMWNDTAADDKQPYEKKAAKLKEKYEK 144
>gi|340711910|ref|XP_003394509.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Bombus terrestris]
gi|350402612|ref|XP_003486543.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Bombus impatiens]
Length = 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 72 VEKPAEINKKKPAERKKPTS---TEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYK 128
+E A NKK + T TE +R K+ D + PKR +AFF F + R + +
Sbjct: 80 LEDGAHCNKKMYYYDRHYTGHEETERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMR 139
Query: 129 EAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
E HP+ GV +AKE G+ W + + K Y+ A E +A Y +
Sbjct: 140 ELHPEM-GVGDIAKELGKLWMSTDLQTKSKYMAIAEEDRARYER 182
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 85 ERKKPTSTEPRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA 144
ER+ T P+ + +KK D N KRPP+AFFLF ++R + K HP + VAK+
Sbjct: 72 EREMKTYIPPKGE-TKKKFKDPNALKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKL 129
Query: 145 GEKWKNMTDEEKKP 158
GE W N ++K+P
Sbjct: 130 GEMWTNTAVDDKQP 143
>gi|341899951|gb|EGT55886.1| hypothetical protein CAEBREN_16260 [Caenorhabditis brenneri]
Length = 620
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 110 KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKAD 169
KRP AF L+++ R +E D K V + K GE+WK TDEEKKPY+D+A L +
Sbjct: 483 KRPLNAFMLYVNFRRNNVREGDSDFKLV-ELTKRFGEEWKAFTDEEKKPYVDEANRLAVE 541
Query: 170 Y 170
+
Sbjct: 542 H 542
>gi|384500553|gb|EIE91044.1| hypothetical protein RO3G_15755 [Rhizopus delemar RA 99-880]
Length = 323
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
K R D+N P +PP+A+ +F +D R E K+ +K T +AK G++WK++ EEK
Sbjct: 172 KYHRHPKPDANAPFKPPSAYVMFSNDTRAELKQ---QNKSFTDLAKIIGDRWKSIPTEEK 228
Query: 157 KPYLDKAAELKADYSKAMEGNGDYNEVE--DKADNEVED-KAENE 198
Y A + + +Y K +E +Y + E + + D KAENE
Sbjct: 229 NAYERNALKAREEYLKRVE---EYQKTEAFQRYQQYLSDFKAENE 270
>gi|71019847|ref|XP_760154.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
gi|46099871|gb|EAK85104.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
Length = 286
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPKRP +AFF F++D R + P+ +T +K GE+WK M+ E+K PY +A
Sbjct: 210 DPAKPKRPNSAFFEFLNDLRAS-EAVIPN---ITEFSKRGGERWKQMSAEQKAPYEQRAL 265
Query: 165 ELKADYSKAME 175
+ Y + +E
Sbjct: 266 QALEQYKRDLE 276
>gi|392873904|gb|AFM85784.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
RPP+AFF+F D R + +P + VAK+ GE W +T ++KKPY ++ A+LK
Sbjct: 96 RPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPYEERGAQLK 151
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKA 163
D +P+ +++ F+ + R+E+K+ HPDS + +K+ E+WK MT ++K + D A
Sbjct: 5 DPRQPRGKMSSYAFFVQNSREEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLA 64
Query: 164 AELKADYSKAM 174
K Y + M
Sbjct: 65 KNDKVRYDREM 75
>gi|365761552|gb|EHN03197.1| Nhp10p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 203
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 34/200 (17%)
Query: 39 RCEEC-NKNVPVAL------ISMHSCSLDAKIKMNLEAQVVEKPAEINKKKP----AERK 87
R EE ++NV + L +S+ L+ + + +E E+N + P A K
Sbjct: 9 RLEELKDQNVVLGLAIQRSRLSVKRLKLEYGVLLERLESRIELDPELNCEDPLPTLASFK 68
Query: 88 KPTSTEP----RAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKE 143
+ T+P + KR + K+ D N PKRP A+ L+ E + G V ++
Sbjct: 69 QELLTKPFRKSKTKRHKVKERDPNMPKRPTNAYLLYC-----EMNKERIRQNGSLDVTRD 123
Query: 144 AGEKWKNMTDEEKKPYLDKAAELKADYSKAME----------GNGDYNEVEDKADNEVED 193
E WKN+ ++++KPY +E + Y ME + D E E K N+ E+
Sbjct: 124 LAEGWKNLNEQDRKPYYKLYSEDRERYQTEMEIYNKKISSADADDDKEESEQKVKND-EE 182
Query: 194 KAENEVEDKAEKEDGDEGGS 213
K+ +V+D E G+EG S
Sbjct: 183 KSPTKVDDTKE---GEEGAS 199
>gi|444722479|gb|ELW63171.1| High mobility group protein B2 [Tupaia chinensis]
Length = 147
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166
N PKRPP+AFFLF + + K HP + AK+ GE W + ++K+P KAA+L
Sbjct: 31 NTPKRPPSAFFLFCSEHLPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPCEQKAAKL 89
Query: 167 KADYSK 172
K Y K
Sbjct: 90 KEKYEK 95
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRPP+AFFLF ++ + K HP + VAK GE W N + K+PY KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKRLGELWNNTAADGKQPYEKKAA 149
Query: 165 ELKADYSK 172
+LK Y K
Sbjct: 150 KLKEKYEK 157
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 114 TAFFLFMDDFRKEYKEAHPD-SKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSK 172
+++ F+ F++E+K+ HPD S + K+ EKWK M+ +EK + D+A KA Y +
Sbjct: 14 SSYAFFVQTFQEEHKKQHPDASVSFSEFPKKCSEKWKAMSAKEKGKFEDRAKADKASYER 73
Query: 173 AM 174
M
Sbjct: 74 DM 75
>gi|392592955|gb|EIW82281.1| HMG-box [Coniophora puteana RWD-64-598 SS2]
Length = 279
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKE---YKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLD 161
D N PK+P +A+F+F+ R + +E D + T + A KW++M+D+E+KP+L
Sbjct: 164 DPNAPKKPLSAYFMFLQRIRSDPALVREVFGDEQETTKQSVLAAAKWRDMSDDERKPFLA 223
Query: 162 KAAELKADYSKA 173
+A + K +Y A
Sbjct: 224 RAEQEKLEYEAA 235
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 99 LRKKDSDSNK-----PKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
+R+KD +K PK P+A+ L+ D+ + +++ V AKEAG+++ ++
Sbjct: 49 IREKDHAPSKSVLKPPKLAPSAWQLYFTDWIQRHQQTSTRKLNVAQAAKEAGQEYAELSA 108
Query: 154 EEKKPYLDKAAELK-------ADYSKAM 174
EK+PY K+A LK A+Y K +
Sbjct: 109 AEKEPYKRKSAALKQERERQNAEYLKTL 136
>gi|254578116|ref|XP_002495044.1| ZYRO0B02068p [Zygosaccharomyces rouxii]
gi|238937934|emb|CAR26111.1| ZYRO0B02068p [Zygosaccharomyces rouxii]
Length = 477
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 18/127 (14%)
Query: 46 NVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRKKDSD 105
N PV + + H S+ + +++L+ N + A KK +ST+ R ++ +K
Sbjct: 281 NSPVMMEATHPSSIQSSPQLHLQ----------NTQSMA--KKLSSTQSRIEK--RKQLK 326
Query: 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAE 165
PKRP +A+FLF R E + +P++K V ++K A +WK + +++KKP+ + E
Sbjct: 327 KQGPKRPSSAYFLFSMSIRNELLQQYPEAK-VPELSKLASARWKELNEDQKKPFYE---E 382
Query: 166 LKADYSK 172
+ ++ K
Sbjct: 383 FRTNWDK 389
>gi|392343502|ref|XP_003754903.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 111 RPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADY 170
+PP++F LF D +E KE HP+ V VAK AG W ++ +K PY ++AA L+A Y
Sbjct: 95 KPPSSFLLFSQDHFEEIKEQHPNW-TVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
>gi|170033409|ref|XP_001844570.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167874308|gb|EDS37691.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 113
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELK 167
KPKRP +A+ L+++ R+ K+ +P K VT +AK+ GE W+ M D K + +KAA++K
Sbjct: 4 KPKRPLSAYMLWLNSAREGIKKENPGIK-VTEIAKKGGELWRGMKD--KTEWENKAAKMK 60
Query: 168 ADYSKAME 175
+Y+KA++
Sbjct: 61 DEYNKAVQ 68
>gi|444727550|gb|ELW68036.1| High mobility group protein B1 [Tupaia chinensis]
Length = 149
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 40 CEECNKNVPVALISMH----SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPR 95
C E +K P A ++ CS KI E + E A+ K + K T P+
Sbjct: 23 CREKHKKHPDASVNFSEFAKKCSGRWKIMSAKEKEKFEDMAKAGKARYGREMK-TYIPPK 81
Query: 96 AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEE 155
+ ++K + + PKRPP+AFFLF ++R + K HP + AK+ GE W N ++
Sbjct: 82 VE-TKEKFKNPSAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIDDAAKKLGEMWNNTAADD 139
Query: 156 KKPYLDKAA 164
K+PY K A
Sbjct: 140 KQPYEKKTA 148
>gi|325181279|emb|CCA15692.1| high mobility group protein putative [Albugo laibachii Nc14]
Length = 231
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D + PKR +AF + R + K+ +PD K T ++K GE W TD +K PY++K
Sbjct: 119 DPSAPKRASSAFLFYSQVMRPQLKKENPDLKN-TDISKRLGEAWSKATDVQKAPYVEKER 177
Query: 165 ELKADYSKAMEGNGDYNEVEDKADNEV 191
E ++ Y + ME ++N +D + E+
Sbjct: 178 EDRSRYKREME---EWNITKDSIEREI 201
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KRL+KK + PKR + + LF D R+E K P VT V + + W M+++EK
Sbjct: 27 KRLQKKAPGA--PKRGKSPYILFSMDKREEIKSHMPADAKVTDVMRAIADAWSKMSEDEK 84
Query: 157 KPY 159
+P+
Sbjct: 85 QPW 87
>gi|343425092|emb|CBQ68629.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 290
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D KPKRP +AFF F++D R + P+ +T +K GE+WK M+ E+K PY +A
Sbjct: 214 DPAKPKRPNSAFFEFLNDLRAS-EAVIPN---ITEFSKRGGERWKQMSAEQKAPYEQRAL 269
Query: 165 ELKADYSKAME 175
+ Y + +E
Sbjct: 270 QALEQYKRDLE 280
>gi|255583781|ref|XP_002532643.1| conserved hypothetical protein [Ricinus communis]
gi|223527634|gb|EEF29746.1| conserved hypothetical protein [Ricinus communis]
Length = 421
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RKK + RP ++ F +F KEY +HP+S G+ K A + WK+M+ EEK Y
Sbjct: 25 RKKKKNQLSTPRPACSWVHFSREFIKEYSASHPESSGLKAATKAASDAWKSMSLEEKAKY 84
Query: 160 LDKAAELKADY 170
+A E+ +Y
Sbjct: 85 TRRAREVWDNY 95
>gi|157110332|ref|XP_001651058.1| hypothetical protein AaeL_AAEL005518 [Aedes aegypti]
gi|108878782|gb|EAT43007.1| AAEL005518-PA [Aedes aegypti]
Length = 791
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
R+ SD N KRP AF ++ D R++ +A PD + ++K G +WK MT+ EK+PY
Sbjct: 651 RRSGSDKNHIKRPMNAFMVWAKDERRKILKACPDMHN-SNISKILGARWKAMTNLEKQPY 709
Query: 160 LDKAAELKADYSKAMEGNGDY 180
++ A+L + ME + DY
Sbjct: 710 YEEQAKLSKQH---MEKHPDY 727
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEK 156
KR K++ D N PKRP +A+ F D+R+ K +P+ + + G KWK++ +EEK
Sbjct: 1 KRRVKREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV-SFGEIGRLLGLKWKSLGEEEK 59
Query: 157 KPYLDKAA 164
KPY D A
Sbjct: 60 KPYEDMAC 67
>gi|428163656|gb|EKX32716.1| FACT complex subunit ssrp1 [Guillardia theta CCMP2712]
Length = 746
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAA 164
D N PKRP +A+ LF D R++ + +PD K T V + E WKN++ +EKKP+ ++AA
Sbjct: 548 DPNAPKRPKSAWLLFCDAKREDIVKENPDIK-FTEVNGKISEIWKNLSSDEKKPFEEEAA 606
Query: 165 ELKADY 170
+L + Y
Sbjct: 607 KLASKY 612
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159
RK+ D N PKR +AFF F D R KE HP+ + +AKE G +W D K Y
Sbjct: 93 RKQVKDPNAPKRSLSAFFWFCHDLRGHVKEQHPEYT-LGEIAKELGRRWGVSDDATKAQY 151
Query: 160 LDKAAELKADYSKAM 174
KA + +A Y + M
Sbjct: 152 AAKAEQDRARYERDM 166
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGV-TGVAKEAGEKWKNMT 152
PRAK DSNKP+ TA+ FM R+E+K +PD V ++ +WK MT
Sbjct: 2 PRAK------GDSNKPRGRMTAYAYFMQTCREEHKNKYPDENVVFLEFSRRCAGQWKLMT 55
Query: 153 DEEKKPY 159
+ +KK +
Sbjct: 56 ENDKKRF 62
>gi|299741148|ref|XP_001834261.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
gi|298404577|gb|EAU87573.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
Length = 184
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 94 PRAKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTD 153
PRA + K D KPKR +A+ F D+R+ K +PD+ G V K G KWK + +
Sbjct: 82 PRAAASKSKK-DPLKPKRALSAYMFFSQDWRERIKAENPDA-GFGEVGKLLGAKWKELDE 139
Query: 154 EEKKPYLDKA 163
EEKKPY++ A
Sbjct: 140 EEKKPYIELA 149
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.303 0.122 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,792,967,688
Number of Sequences: 23463169
Number of extensions: 170329469
Number of successful extensions: 1362524
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5053
Number of HSP's successfully gapped in prelim test: 18307
Number of HSP's that attempted gapping in prelim test: 1114185
Number of HSP's gapped (non-prelim): 148094
length of query: 232
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 94
effective length of database: 9,121,278,045
effective search space: 857400136230
effective search space used: 857400136230
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 74 (33.1 bits)