Query 026832
Match_columns 232
No_of_seqs 237 out of 1236
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 23:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yrq_A High mobility group pro 100.0 5.2E-31 1.8E-35 218.4 11.2 154 24-183 12-172 (173)
2 2gzk_A Sex-determining region 100.0 4.4E-30 1.5E-34 209.9 11.6 150 27-182 4-158 (159)
3 3tmm_A Transcription factor A, 99.9 3.4E-28 1.2E-32 211.6 1.1 153 24-185 38-215 (238)
4 3tq6_A Transcription factor A, 99.9 6.5E-28 2.2E-32 206.8 0.8 152 25-185 7-183 (214)
5 1hme_A High mobility group pro 99.9 1.4E-22 4.7E-27 146.6 9.4 76 103-182 1-76 (77)
6 1k99_A Upstream binding factor 99.9 7.8E-23 2.7E-27 155.4 8.2 82 100-185 2-83 (99)
7 2co9_A Thymus high mobility gr 99.9 1.3E-22 4.6E-27 154.8 9.0 83 99-185 8-90 (102)
8 2eqz_A High mobility group pro 99.9 1.9E-22 6.5E-27 149.2 8.8 80 99-181 6-86 (86)
9 2e6o_A HMG box-containing prot 99.9 5.5E-22 1.9E-26 147.1 8.3 78 100-181 9-86 (87)
10 2crj_A SWI/SNF-related matrix- 99.9 7.1E-22 2.4E-26 147.9 8.9 79 103-185 2-80 (92)
11 1wgf_A Upstream binding factor 99.9 1.2E-22 4E-27 151.7 3.6 77 98-175 10-86 (90)
12 1aab_A High mobility group pro 99.9 3.9E-22 1.3E-26 146.4 6.2 79 103-184 2-81 (83)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 1.1E-21 3.7E-26 141.5 7.8 74 105-182 1-74 (76)
14 1cg7_A Protein (NON histone pr 99.9 1E-22 3.6E-27 152.9 2.3 82 99-184 11-92 (93)
15 3nm9_A HMG-D, high mobility gr 99.9 1.3E-21 4.4E-26 140.4 7.9 72 106-183 1-72 (73)
16 2lhj_A High mobility group pro 99.8 2.3E-22 7.8E-27 152.0 3.3 81 99-183 13-95 (97)
17 2cs1_A PMS1 protein homolog 1; 99.8 1.4E-21 4.7E-26 146.3 7.3 78 104-185 3-80 (92)
18 1wxl_A Single-strand recogniti 99.8 4.5E-21 1.6E-25 137.5 8.1 72 106-183 1-72 (73)
19 1j46_A SRY, sex-determining re 99.8 9.9E-21 3.4E-25 139.6 9.0 77 105-185 1-77 (85)
20 1ckt_A High mobility group 1 p 99.8 1.2E-20 4.2E-25 134.1 8.4 70 108-180 1-71 (71)
21 1wz6_A HMG-box transcription f 99.8 4.7E-21 1.6E-25 140.2 5.9 77 104-184 3-79 (82)
22 4a3n_A Transcription factor SO 99.8 8.2E-21 2.8E-25 134.8 6.2 71 107-181 1-71 (71)
23 1gt0_D Transcription factor SO 99.8 2.3E-20 8E-25 135.8 8.5 75 107-185 1-75 (80)
24 4euw_A Transcription factor SO 99.8 2.5E-20 8.6E-25 143.2 8.9 81 101-185 22-102 (106)
25 3f27_D Transcription factor SO 99.8 2.1E-20 7.1E-25 136.9 7.8 77 105-185 3-79 (83)
26 1i11_A Transcription factor SO 99.8 3.2E-20 1.1E-24 135.5 7.9 76 106-185 2-77 (81)
27 3u2b_C Transcription factor SO 99.8 3.2E-20 1.1E-24 134.5 7.9 75 107-185 1-75 (79)
28 2lef_A LEF-1 HMG, protein (lym 99.8 5.4E-20 1.8E-24 135.8 8.9 74 107-184 1-74 (86)
29 1l8y_A Upstream binding factor 99.8 1E-19 3.4E-24 136.3 8.5 74 107-185 3-76 (91)
30 1v64_A Nucleolar transcription 99.8 8.9E-20 3E-24 140.7 6.9 78 100-185 8-86 (108)
31 3fgh_A Transcription factor A, 99.8 2E-19 6.8E-24 126.8 6.1 66 107-180 1-66 (67)
32 2d7l_A WD repeat and HMG-box D 99.8 3.4E-19 1.2E-23 130.9 5.6 61 105-166 2-63 (81)
33 2yrq_A High mobility group pro 99.8 9E-19 3.1E-23 144.7 7.7 82 100-184 7-89 (173)
34 1v63_A Nucleolar transcription 99.8 2E-18 6.7E-23 131.6 8.3 76 104-185 4-79 (101)
35 2yuk_A Myeloid/lymphoid or mix 99.7 2.5E-19 8.7E-24 134.0 -0.4 68 101-173 15-84 (90)
36 2cto_A Novel protein; high mob 99.7 1.9E-18 6.6E-23 130.0 4.2 71 102-175 4-77 (93)
37 3tq6_A Transcription factor A, 99.7 1.4E-17 4.9E-22 142.4 6.6 77 105-185 6-82 (214)
38 3tmm_A Transcription factor A, 99.7 1.1E-17 3.8E-22 145.2 5.9 80 102-185 35-114 (238)
39 2gzk_A Sex-determining region 99.6 5.2E-16 1.8E-20 126.3 8.3 74 106-183 2-75 (159)
40 2lhj_A High mobility group pro 98.6 7.5E-09 2.6E-13 77.5 0.7 85 1-91 1-92 (97)
41 2eqz_A High mobility group pro 98.6 1.7E-08 5.9E-13 73.8 2.0 66 25-91 13-85 (86)
42 1aab_A High mobility group pro 98.6 3.4E-08 1.1E-12 71.6 3.5 71 23-94 3-80 (83)
43 1wgf_A Upstream binding factor 98.5 7.3E-08 2.5E-12 71.1 5.1 67 24-91 17-88 (90)
44 1l8y_A Upstream binding factor 98.5 3.8E-08 1.3E-12 73.4 2.9 60 33-93 8-73 (91)
45 1cg7_A Protein (NON histone pr 98.4 1E-07 3.5E-12 70.8 2.5 67 24-91 17-88 (93)
46 3fgh_A Transcription factor A, 98.4 6.8E-08 2.3E-12 67.2 1.4 60 28-91 3-66 (67)
47 1v64_A Nucleolar transcription 98.4 1.2E-07 4.1E-12 72.5 2.8 66 26-92 15-82 (108)
48 2e6o_A HMG box-containing prot 98.3 5.1E-07 1.8E-11 66.0 5.1 66 25-91 15-85 (87)
49 2lef_A LEF-1 HMG, protein (lym 98.3 4.4E-07 1.5E-11 66.2 3.8 47 45-92 23-71 (86)
50 2co9_A Thymus high mobility gr 98.3 2.2E-07 7.4E-12 70.1 1.9 66 25-91 15-85 (102)
51 1v63_A Nucleolar transcription 98.3 2.9E-07 9.8E-12 69.6 2.5 64 27-92 8-75 (101)
52 1ckt_A High mobility group 1 p 98.3 2.3E-07 7.8E-12 65.0 1.5 47 44-91 21-71 (71)
53 1hme_A High mobility group pro 98.3 5.5E-07 1.9E-11 64.1 3.5 69 23-92 2-75 (77)
54 1k99_A Upstream binding factor 98.2 6.7E-07 2.3E-11 67.2 3.8 67 24-91 7-78 (99)
55 2cs1_A PMS1 protein homolog 1; 98.1 1.4E-06 4.8E-11 64.3 3.0 68 25-93 5-77 (92)
56 1wz6_A HMG-box transcription f 98.1 1.7E-06 5.8E-11 62.4 3.3 68 24-92 4-76 (82)
57 4euw_A Transcription factor SO 98.1 1.7E-06 5.8E-11 65.7 3.3 69 24-93 26-99 (106)
58 4a3n_A Transcription factor SO 98.1 2E-06 6.9E-11 59.9 3.4 63 28-91 3-70 (71)
59 1hry_A Human SRY; DNA, DNA-bin 98.1 1.9E-06 6.7E-11 61.0 3.1 66 26-92 3-73 (76)
60 2cto_A Novel protein; high mob 98.0 6.3E-06 2.2E-10 61.5 5.0 63 26-90 9-78 (93)
61 3f27_D Transcription factor SO 98.0 3.4E-06 1.2E-10 60.7 3.2 66 26-92 5-75 (83)
62 1j46_A SRY, sex-determining re 98.0 3.7E-06 1.3E-10 61.1 3.3 67 26-93 3-74 (85)
63 2crj_A SWI/SNF-related matrix- 98.0 1.1E-06 3.8E-11 64.9 0.5 70 23-93 3-77 (92)
64 1gt0_D Transcription factor SO 97.9 6E-06 2.1E-10 59.1 3.8 49 44-93 22-72 (80)
65 2d7l_A WD repeat and HMG-box D 97.9 6.2E-06 2.1E-10 59.9 3.2 57 24-80 2-64 (81)
66 1wxl_A Single-strand recogniti 97.9 3.5E-06 1.2E-10 59.4 1.8 64 26-92 2-70 (73)
67 3u2b_C Transcription factor SO 97.9 9.1E-06 3.1E-10 57.8 3.8 64 28-92 3-71 (79)
68 1i11_A Transcription factor SO 97.7 1.7E-05 6E-10 56.8 3.3 65 27-92 4-73 (81)
69 3nm9_A HMG-D, high mobility gr 97.6 9.3E-06 3.2E-10 57.2 -0.1 60 27-91 3-69 (73)
70 2yuk_A Myeloid/lymphoid or mix 97.5 3.1E-05 1.1E-09 57.4 1.8 61 24-87 19-84 (90)
71 2qgu_A Probable signal peptide 41.6 16 0.00056 30.0 2.9 48 132-183 70-119 (211)
72 3ukw_C Bimax1 peptide; arm rep 24.4 28 0.00097 19.2 1.0 10 7-16 18-27 (28)
73 2ayu_A Nucleosome assembly pro 20.7 23 0.00077 32.6 0.2 9 113-121 309-317 (417)
No 1
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=5.2e-31 Score=218.41 Aligned_cols=154 Identities=34% Similarity=0.513 Sum_probs=132.6
Q ss_pred CccccccCCCCchhHhh---HhhhcCCcc---chhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCChhh
Q 026832 24 SSATLMRGRDGSAFARC---EECNKNVPV---ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRA 96 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~c---e~~~~~~~v---a~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~~k~ 96 (232)
+++.++|...+..|... ..+...+|. .+.++ ++|+.+|+.||+.||++|.++|+.++ .+|+.++..|.++.+
T Consensus 12 dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~y~~~~~ 90 (173)
T 2yrq_A 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK-ARYEREMKTYIPPKG 90 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHTHHHHHHCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhh
Confidence 34678887655444322 333455665 45566 89999999999999999999999999 999999999987755
Q ss_pred hhhcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcC
Q 026832 97 KRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG 176 (232)
Q Consensus 97 kk~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~ 176 (232)
. ++++.++|++||||+|||||||+++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++.+|..+|+
T Consensus 91 ~-~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~- 167 (173)
T 2yrq_A 91 E-TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA- 167 (173)
T ss_dssp C-SSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHH-
T ss_pred h-hcccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3 345678999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred Cccchhh
Q 026832 177 NGDYNEV 183 (232)
Q Consensus 177 ~~~y~~~ 183 (232)
+|+.+
T Consensus 168 --~y~~k 172 (173)
T 2yrq_A 168 --AYRAK 172 (173)
T ss_dssp --HHHCC
T ss_pred --HHHhc
Confidence 99865
No 2
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.96 E-value=4.4e-30 Score=209.85 Aligned_cols=150 Identities=29% Similarity=0.437 Sum_probs=128.6
Q ss_pred ccccCCCCchhHhhHhh-h--cCCcc-chhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCChhhhhhcc
Q 026832 27 TLMRGRDGSAFARCEEC-N--KNVPV-ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEPRAKRLRK 101 (232)
Q Consensus 27 ~~~r~~dgsaf~~ce~~-~--~~~~v-a~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~~k~kk~kK 101 (232)
.++|+.++..+..|+.. . ..+|. .+.++ +.||..|+.||+.||++|.++|..++ .+|..++..|..++++ +++
T Consensus 4 ~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~y~~~k~~-~kk 81 (159)
T 2gzk_A 4 RVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ-AMHREKYPNYKYRKGE-TKK 81 (159)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHCSSCSCCCCC-CGG
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHH-HHHHHHhhcccccccc-ccc
Confidence 56776554444455333 2 44554 34444 89999999999999999999999999 9999999999876543 345
Q ss_pred cCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccch
Q 026832 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (232)
Q Consensus 102 ~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~ 181 (232)
+.++|++||||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|. +|+
T Consensus 82 ~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~---~y~ 157 (159)
T 2gzk_A 82 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA---AYR 157 (159)
T ss_dssp GSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred cccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 678999999999999999999999999999999 9999999999999999999999999999999999999999 997
Q ss_pred h
Q 026832 182 E 182 (232)
Q Consensus 182 ~ 182 (232)
.
T Consensus 158 ~ 158 (159)
T 2gzk_A 158 A 158 (159)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.94 E-value=3.4e-28 Score=211.57 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=123.1
Q ss_pred CccccccCCCCchhHhh---HhhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC----Ch
Q 026832 24 SSATLMRGRDGSAFARC---EECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST----EP 94 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~c---e~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~----~~ 94 (232)
++..++|...+.+|... ..+...+|.. +.++ ++|+.+|+.|++.||++|+++|..++ .+|+.+|..|. +.
T Consensus 38 ~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k-~~y~~e~~~y~~~~~p~ 116 (238)
T 3tmm_A 38 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW-QVYKEEISRFKEQLTPS 116 (238)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHH
Confidence 44567776554443322 3344455544 4455 89999999999999999999999999 99999998883 22
Q ss_pred h----------------hhhhcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchH
Q 026832 95 R----------------AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKP 158 (232)
Q Consensus 95 k----------------~kk~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~ 158 (232)
. +.++++..++|++||||+|||||||+++|+.|+..|| .+|+++||++|++|++++|++
T Consensus 117 ~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~ 191 (238)
T 3tmm_A 117 QIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKEL 191 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHH
T ss_pred HHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHH
Confidence 1 1112234579999999999999999999999876554 479999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhcc
Q 026832 159 YLDKAAELKADYSKAMEGNGDYNEVED 185 (232)
Q Consensus 159 Y~~~A~~~k~~Y~ke~~~~~~y~~~~~ 185 (232)
|.++|..++++|.++|. +|+.++.
T Consensus 192 Y~~~A~~~k~~Y~~e~~---~y~~k~~ 215 (238)
T 3tmm_A 192 YIQHAKEDETRYHNEMK---SWEEQMI 215 (238)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHhCc
Confidence 99999999999999999 9999876
No 4
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.93 E-value=6.5e-28 Score=206.79 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=121.5
Q ss_pred ccccccCCCCchhHhh---HhhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC----Chh
Q 026832 25 SATLMRGRDGSAFARC---EECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST----EPR 95 (232)
Q Consensus 25 ~~~~~r~~dgsaf~~c---e~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~----~~k 95 (232)
+..++|...+..|... ..+...+|.. +.++ +.||.+|+.||+.||++|+++|..++ .+|+.++..|. ++.
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k-~~y~~e~~~y~~~~tp~q 85 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW-QVYKEEISRFKEQLTPSQ 85 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHH-HHHHHHhhhhcccCCHHH
Confidence 3456765554433322 3334445544 4445 89999999999999999999999999 99999998883 221
Q ss_pred ----------------hhhhcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHH
Q 026832 96 ----------------AKRLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPY 159 (232)
Q Consensus 96 ----------------~kk~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y 159 (232)
+.++++..++|++||||+|||||||+++|+.|+..|| .+|+++||++|++||+++|++|
T Consensus 86 ~~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y 160 (214)
T 3tq6_A 86 IMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELY 160 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHH
Confidence 1112234579999999999999999999998876554 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhcc
Q 026832 160 LDKAAELKADYSKAMEGNGDYNEVED 185 (232)
Q Consensus 160 ~~~A~~~k~~Y~ke~~~~~~y~~~~~ 185 (232)
.++|..++++|..+|. +|+.++.
T Consensus 161 ~~~A~~~k~~Y~~e~~---~y~~~~~ 183 (214)
T 3tq6_A 161 IQHAKEDETRYHNEMK---SWEEQMI 183 (214)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHhCc
Confidence 9999999999999999 9999876
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.88 E-value=1.4e-22 Score=146.59 Aligned_cols=76 Identities=45% Similarity=0.832 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchh
Q 026832 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (232)
Q Consensus 103 ~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~ 182 (232)
++||++||||+||||||++++|..|+..||++ ++.+|+++||++|+.||+++|++|.++|..++.+|..+|+ .|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~---~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA---AYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHT---TSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---HHhc
Confidence 47999999999999999999999999999999 9999999999999999999999999999999999999999 9975
No 6
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.88 E-value=7.8e-23 Score=155.43 Aligned_cols=82 Identities=22% Similarity=0.481 Sum_probs=78.7
Q ss_pred cccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCcc
Q 026832 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179 (232)
Q Consensus 100 kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~ 179 (232)
+++++||++||||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|. .
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~---~ 77 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLA---R 77 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHG---G
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 45778999999999999999999999999999999 8999999999999999999999999999999999999999 9
Q ss_pred chhhcc
Q 026832 180 YNEVED 185 (232)
Q Consensus 180 y~~~~~ 185 (232)
|....+
T Consensus 78 y~~~~P 83 (99)
T 1k99_A 78 FREDHP 83 (99)
T ss_dssp GGGCCC
T ss_pred HHHHCC
Confidence 998876
No 7
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.3e-22 Score=154.77 Aligned_cols=83 Identities=28% Similarity=0.513 Sum_probs=79.2
Q ss_pred hcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCc
Q 026832 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178 (232)
Q Consensus 99 ~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~ 178 (232)
++++++||++||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|+
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~--- 83 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLA--- 83 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 345778999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cchhhcc
Q 026832 179 DYNEVED 185 (232)
Q Consensus 179 ~y~~~~~ 185 (232)
.|+.+..
T Consensus 84 ~Y~~~~~ 90 (102)
T 2co9_A 84 AYRASLV 90 (102)
T ss_dssp HHHHHHT
T ss_pred HHHhhcc
Confidence 9998776
No 8
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=149.17 Aligned_cols=80 Identities=29% Similarity=0.533 Sum_probs=74.9
Q ss_pred hcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCC
Q 026832 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGN 177 (232)
Q Consensus 99 ~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~-~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~ 177 (232)
+++.++||++||||+||||||++++|..|+.+||++. ++.+|+++||++|+.||+++|++|.++|..++++|..+|.
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~-- 83 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK-- 83 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3457799999999999999999999999999999984 3799999999999999999999999999999999999999
Q ss_pred ccch
Q 026832 178 GDYN 181 (232)
Q Consensus 178 ~~y~ 181 (232)
.|+
T Consensus 84 -~Y~ 86 (86)
T 2eqz_A 84 -DYG 86 (86)
T ss_dssp -HHC
T ss_pred -HcC
Confidence 884
No 9
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=5.5e-22 Score=147.07 Aligned_cols=78 Identities=29% Similarity=0.513 Sum_probs=75.1
Q ss_pred cccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCcc
Q 026832 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGD 179 (232)
Q Consensus 100 kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~ 179 (232)
++..++|++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+++ +
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P---~ 84 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNP---D 84 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC---C
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCc---C
Confidence 35778999999999999999999999999999999 9999999999999999999999999999999999999999 9
Q ss_pred ch
Q 026832 180 YN 181 (232)
Q Consensus 180 y~ 181 (232)
|+
T Consensus 85 Yk 86 (87)
T 2e6o_A 85 CW 86 (87)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 10
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.86 E-value=7.1e-22 Score=147.92 Aligned_cols=79 Identities=32% Similarity=0.588 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchh
Q 026832 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (232)
Q Consensus 103 ~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~ 182 (232)
.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++.+|..+|+ .|+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~---~Y~~ 77 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELW---AYQQ 77 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH---HHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHc
Confidence 47999999999999999999999999999999 9999999999999999999999999999999999999999 9987
Q ss_pred hcc
Q 026832 183 VED 185 (232)
Q Consensus 183 ~~~ 185 (232)
+..
T Consensus 78 ~~~ 80 (92)
T 2crj_A 78 SEA 80 (92)
T ss_dssp SHH
T ss_pred cHH
Confidence 665
No 11
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=1.2e-22 Score=151.70 Aligned_cols=77 Identities=25% Similarity=0.516 Sum_probs=73.3
Q ss_pred hhcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhc
Q 026832 98 RLRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAME 175 (232)
Q Consensus 98 k~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~ 175 (232)
+++++++||++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|.
T Consensus 10 k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 10 SQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999999 9999999999999999999999999999999999998887
No 12
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.86 E-value=3.9e-22 Score=146.36 Aligned_cols=79 Identities=30% Similarity=0.566 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccch
Q 026832 103 DSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (232)
Q Consensus 103 ~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~-~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~ 181 (232)
++||++||||+|||||||+++|..|+.+||++. ++.+|+++||++|+.||+++|++|.++|..++++|..+|. .|+
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~---~y~ 78 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK---TYI 78 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTT---TCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 479999999999999999999999999999983 2589999999999999999999999999999999999999 997
Q ss_pred hhc
Q 026832 182 EVE 184 (232)
Q Consensus 182 ~~~ 184 (232)
...
T Consensus 79 ~~~ 81 (83)
T 1aab_A 79 PPK 81 (83)
T ss_dssp CCS
T ss_pred ccC
Confidence 653
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.85 E-value=1.1e-21 Score=141.50 Aligned_cols=74 Identities=27% Similarity=0.500 Sum_probs=70.2
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchh
Q 026832 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNE 182 (232)
Q Consensus 105 dp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~ 182 (232)
||++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|+ +|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~---~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYP---NYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSS---SCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCC---CCCC
Confidence 689999999999999999999999999999 8899999999999999999999999999999999999999 9974
No 14
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.85 E-value=1e-22 Score=152.87 Aligned_cols=82 Identities=38% Similarity=0.594 Sum_probs=77.9
Q ss_pred hcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCc
Q 026832 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178 (232)
Q Consensus 99 ~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~ 178 (232)
+++..+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|+
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~--- 86 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKE--- 86 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHH---
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456778999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred cchhhc
Q 026832 179 DYNEVE 184 (232)
Q Consensus 179 ~y~~~~ 184 (232)
.|+.++
T Consensus 87 ~Y~~~~ 92 (93)
T 1cg7_A 87 LYNATL 92 (93)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 998764
No 15
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.85 E-value=1.3e-21 Score=140.38 Aligned_cols=72 Identities=40% Similarity=0.703 Sum_probs=69.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhh
Q 026832 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (232)
Q Consensus 106 p~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~ 183 (232)
+++||||+|||||||+++|+.|+.+||++ ++.+|+++||++|+.||+ |++|.++|.+++++|..+|+ +|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~---~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVK---EFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHH---HHHhc
Confidence 47899999999999999999999999999 999999999999999998 99999999999999999999 99875
No 16
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.85 E-value=2.3e-22 Score=152.01 Aligned_cols=81 Identities=31% Similarity=0.594 Sum_probs=76.8
Q ss_pred hcccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcC
Q 026832 99 LRKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG--VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEG 176 (232)
Q Consensus 99 ~kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~--~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~ 176 (232)
+++..+||++||||+||||||++++|..|+.+||++ + +.+|+++||++|+.||+++|++|.++|..++.+|..+|.
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~- 90 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA- 90 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH-
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345778999999999999999999999999999998 7 899999999999999999999999999999999999999
Q ss_pred Cccchhh
Q 026832 177 NGDYNEV 183 (232)
Q Consensus 177 ~~~y~~~ 183 (232)
.|+.+
T Consensus 91 --~y~~~ 95 (97)
T 2lhj_A 91 --EYAQR 95 (97)
T ss_dssp --HHHHH
T ss_pred --HHHhc
Confidence 99865
No 17
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=146.34 Aligned_cols=78 Identities=29% Similarity=0.451 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhh
Q 026832 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (232)
Q Consensus 104 kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~ 183 (232)
.+|++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|.+++++|..+|. .|+.+
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~---~y~~~ 78 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMK---RAIEQ 78 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHH---HHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 5789999999999999999999999999999 9999999999999999999999999999999999999999 99987
Q ss_pred cc
Q 026832 184 ED 185 (232)
Q Consensus 184 ~~ 185 (232)
+.
T Consensus 79 ~~ 80 (92)
T 2cs1_A 79 ES 80 (92)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 18
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.84 E-value=4.5e-21 Score=137.51 Aligned_cols=72 Identities=39% Similarity=0.672 Sum_probs=69.5
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhh
Q 026832 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (232)
Q Consensus 106 p~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~ 183 (232)
|++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.| ++|++|.++|..++++|..+|. .|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~---~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMR---NYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTG---GGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHH---HHHcc
Confidence 78999999999999999999999999999 9999999999999999 8899999999999999999999 99764
No 19
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.83 E-value=9.9e-21 Score=139.63 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=73.6
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhc
Q 026832 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184 (232)
Q Consensus 105 dp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~ 184 (232)
.|++||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|+ +|+...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~---~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYP---NYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT---TCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCc---ccccCC
Confidence 378999999999999999999999999999 9999999999999999999999999999999999999999 998765
Q ss_pred c
Q 026832 185 D 185 (232)
Q Consensus 185 ~ 185 (232)
.
T Consensus 77 r 77 (85)
T 1j46_A 77 R 77 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.83 E-value=1.2e-20 Score=134.14 Aligned_cols=70 Identities=33% Similarity=0.634 Sum_probs=66.7
Q ss_pred CCCCCCCchhhhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccc
Q 026832 108 KPKRPPTAFFLFMDDFRKEYKEAHPDSK-GVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180 (232)
Q Consensus 108 ~PKrP~sAy~lF~~e~R~~~k~~~P~~~-~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y 180 (232)
+||||+||||||++++|..++..||++. ++.+|+++||++|++||+++|++|.++|..++++|..+|. .|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~---~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK---TY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHT---TC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH---hC
Confidence 5999999999999999999999999984 3599999999999999999999999999999999999999 77
No 21
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.83 E-value=4.7e-21 Score=140.25 Aligned_cols=77 Identities=31% Similarity=0.484 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhh
Q 026832 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (232)
Q Consensus 104 kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~ 183 (232)
.++++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|+ .|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~---~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANP---GYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCS---SCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhH---HhhcC
Confidence 5789999999999999999999999999999 8899999999999999999999999999999999999999 99865
Q ss_pred c
Q 026832 184 E 184 (232)
Q Consensus 184 ~ 184 (232)
.
T Consensus 79 p 79 (82)
T 1wz6_A 79 P 79 (82)
T ss_dssp T
T ss_pred C
Confidence 4
No 22
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.82 E-value=8.2e-21 Score=134.79 Aligned_cols=71 Identities=28% Similarity=0.560 Sum_probs=63.4
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccch
Q 026832 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (232)
Q Consensus 107 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~ 181 (232)
++||||+||||||++++|..++..||++ ++.+|+++||++|+.||+++|++|.++|..++.+|..+|+ +|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~---~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHP---NYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCc---CcC
Confidence 4789999999999999999999999999 8999999999999999999999999999999999999999 885
No 23
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.82 E-value=2.3e-20 Score=135.83 Aligned_cols=75 Identities=28% Similarity=0.549 Sum_probs=71.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhcc
Q 026832 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185 (232)
Q Consensus 107 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~~ 185 (232)
++||||+||||||++++|..|+..||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|+ +|+.+..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~---~Yk~~p~ 75 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP---DYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT---TCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCc---ccccCCC
Confidence 4799999999999999999999999999 9999999999999999999999999999999999999999 9987654
No 24
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=143.18 Aligned_cols=81 Identities=22% Similarity=0.482 Sum_probs=70.9
Q ss_pred ccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccc
Q 026832 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180 (232)
Q Consensus 101 K~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y 180 (232)
...+++++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|+ .|
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~---~Y 97 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHP---DY 97 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCT---TC
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhh---hc
Confidence 3568899999999999999999999999999999 9999999999999999999999999999999999999999 99
Q ss_pred hhhcc
Q 026832 181 NEVED 185 (232)
Q Consensus 181 ~~~~~ 185 (232)
+-...
T Consensus 98 ky~Pr 102 (106)
T 4euw_A 98 KYQPR 102 (106)
T ss_dssp CC---
T ss_pred CcCCC
Confidence 87654
No 25
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.82 E-value=2.1e-20 Score=136.89 Aligned_cols=77 Identities=26% Similarity=0.493 Sum_probs=70.2
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhc
Q 026832 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184 (232)
Q Consensus 105 dp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~ 184 (232)
.+++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|+ +|+-+.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~---~Yky~P 78 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHP---NYKYRP 78 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---TCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCC---CCeeCC
Confidence 467899999999999999999999999999 8999999999999999999999999999999999999999 998654
Q ss_pred c
Q 026832 185 D 185 (232)
Q Consensus 185 ~ 185 (232)
.
T Consensus 79 ~ 79 (83)
T 3f27_D 79 R 79 (83)
T ss_dssp C
T ss_pred c
Confidence 4
No 26
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=3.2e-20 Score=135.53 Aligned_cols=76 Identities=33% Similarity=0.544 Sum_probs=68.8
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhcc
Q 026832 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185 (232)
Q Consensus 106 p~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~~ 185 (232)
+++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++.+|..+++ +|+-...
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p---~Yky~pr 77 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYP---DYKYKPR 77 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCS---CC-----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCC---CCeeccC
Confidence 47899999999999999999999999999 8999999999999999999999999999999999999999 9986543
No 27
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=3.2e-20 Score=134.54 Aligned_cols=75 Identities=27% Similarity=0.487 Sum_probs=71.3
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhcc
Q 026832 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185 (232)
Q Consensus 107 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~~ 185 (232)
++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|+ +|+-...
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p---~Yky~Pr 75 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYP---DYKYRPR 75 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSS---SCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC---CCeeCCC
Confidence 5799999999999999999999999999 9999999999999999999999999999999999999999 9986543
No 28
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=5.4e-20 Score=135.84 Aligned_cols=74 Identities=18% Similarity=0.360 Sum_probs=70.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhc
Q 026832 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184 (232)
Q Consensus 107 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~ 184 (232)
+.||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|+ +|+...
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~---~Yk~~p 74 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYP---GWSARD 74 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHST---TCCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcc---cccCCC
Confidence 3699999999999999999999999999 9999999999999999999999999999999999999999 998544
No 29
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.80 E-value=1e-19 Score=136.34 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=71.4
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhcc
Q 026832 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVED 185 (232)
Q Consensus 107 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~~ 185 (232)
+.||||+||||||++++|..++..||+ ++.+|++.||++|+.||+++|++|+++|..++++|.++|. +|+.+..
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~---~Y~~~~~ 76 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELS---EMRAPPA 76 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHH---TTSCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHcccc
Confidence 689999999999999999999999998 7899999999999999999999999999999999999999 9988766
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=8.9e-20 Score=140.71 Aligned_cols=78 Identities=26% Similarity=0.437 Sum_probs=73.5
Q ss_pred cccCCCCCCC-CCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCc
Q 026832 100 RKKDSDSNKP-KRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178 (232)
Q Consensus 100 kK~~kdp~~P-KrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~ 178 (232)
.++.++|++| |||+|||||||+++|..|+ ++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~--- 79 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELL--- 79 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4577899999 9999999999999999987 66 8999999999999999999999999999999999999999
Q ss_pred cchhhcc
Q 026832 179 DYNEVED 185 (232)
Q Consensus 179 ~y~~~~~ 185 (232)
.|..+..
T Consensus 80 ~Y~~~~~ 86 (108)
T 1v64_A 80 RFLESLP 86 (108)
T ss_dssp HHHHHSC
T ss_pred HHHhhCC
Confidence 9998776
No 31
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=126.76 Aligned_cols=66 Identities=33% Similarity=0.613 Sum_probs=62.1
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccc
Q 026832 107 NKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDY 180 (232)
Q Consensus 107 ~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y 180 (232)
|+||||+|||+||++++|..++..|| .+|+++||++|+.||+++|++|.++|..++.+|..+|. .|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~---~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK---SW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH---HC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 57999999999999999999987654 68999999999999999999999999999999999999 77
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-19 Score=130.87 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=58.9
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCChhhchHHHHHHHHH
Q 026832 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG-VTGVAKEAGEKWKNMTDEEKKPYLDKAAEL 166 (232)
Q Consensus 105 dp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~-~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~ 166 (232)
++++||||+|||||||+++|..|+.+||++ + +.+|+++||++|+.||+++|++|+++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 7 999999999999999999999999999876
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9e-19 Score=144.73 Aligned_cols=82 Identities=29% Similarity=0.532 Sum_probs=76.4
Q ss_pred cccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCc
Q 026832 100 RKKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDS-KGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNG 178 (232)
Q Consensus 100 kK~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~-~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~ 178 (232)
++.++||++||||+||||||++++|..|+..||++ .++.+|+++||++|+.||+++|++|.++|..++++|..+|.
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~--- 83 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK--- 83 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 45678999999999999999999999999999994 28999999999999999999999999999999999999999
Q ss_pred cchhhc
Q 026832 179 DYNEVE 184 (232)
Q Consensus 179 ~y~~~~ 184 (232)
.|....
T Consensus 84 ~y~~~~ 89 (173)
T 2yrq_A 84 TYIPPK 89 (173)
T ss_dssp HCCCCC
T ss_pred hhhhhh
Confidence 997643
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=2e-18 Score=131.60 Aligned_cols=76 Identities=16% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhh
Q 026832 104 SDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (232)
Q Consensus 104 kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~ 183 (232)
....+||||+|||||||++++. ...++++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|. .|..+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~---~Y~~~ 77 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLD---LWVKS 77 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---HHHhh
Confidence 3457899999999999999975 2344556 8899999999999999999999999999999999999999 99988
Q ss_pred cc
Q 026832 184 ED 185 (232)
Q Consensus 184 ~~ 185 (232)
..
T Consensus 78 ~~ 79 (101)
T 1v63_A 78 LS 79 (101)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-19 Score=134.01 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=63.5
Q ss_pred ccCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHH
Q 026832 101 KKDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKG--VTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKA 173 (232)
Q Consensus 101 K~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~--~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke 173 (232)
|..+||++||||+|||||||+++|+.|+.+||++ + +.+|+ ++|+.|++++|+||+++|.+++++|+..
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999999998 7 78887 9999999999999999999999999764
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-18 Score=130.03 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=66.6
Q ss_pred cCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhcCCChhhchHHHHHHHHHHHHHHHHhc
Q 026832 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEA---GEKWKNMTDEEKKPYLDKAAELKADYSKAME 175 (232)
Q Consensus 102 ~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~l---ge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~ 175 (232)
....+++||||+|||||||+++|+.|+.+ ++ ++.+|+++| |++|+.|++++|++|+++|.+++++|.+++.
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 34678999999999999999999999988 66 788999999 9999999999999999999999999999987
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=142.41 Aligned_cols=77 Identities=21% Similarity=0.433 Sum_probs=73.6
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhhc
Q 026832 105 DSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEVE 184 (232)
Q Consensus 105 dp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~~ 184 (232)
.|++||||+|||||||+++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|. .|...+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~---~y~~~~ 81 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS---RFKEQL 81 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhh---hhcccC
Confidence 367999999999999999999999999999 8999999999999999999999999999999999999999 998766
Q ss_pred c
Q 026832 185 D 185 (232)
Q Consensus 185 ~ 185 (232)
+
T Consensus 82 t 82 (214)
T 3tq6_A 82 T 82 (214)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=145.22 Aligned_cols=80 Identities=20% Similarity=0.415 Sum_probs=76.1
Q ss_pred cCCCCCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccch
Q 026832 102 KDSDSNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYN 181 (232)
Q Consensus 102 ~~kdp~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~ 181 (232)
...+|++||||+|||||||+++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|. .|.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~---~y~ 110 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS---RFK 110 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 356899999999999999999999999999999 8999999999999999999999999999999999999999 998
Q ss_pred hhcc
Q 026832 182 EVED 185 (232)
Q Consensus 182 ~~~~ 185 (232)
..+.
T Consensus 111 ~~~~ 114 (238)
T 3tmm_A 111 EQLT 114 (238)
T ss_dssp HHCC
T ss_pred hcCC
Confidence 7664
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.63 E-value=5.2e-16 Score=126.25 Aligned_cols=74 Identities=27% Similarity=0.504 Sum_probs=71.1
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChhhchHHHHHHHHHHHHHHHHhcCCccchhh
Q 026832 106 SNKPKRPPTAFFLFMDDFRKEYKEAHPDSKGVTGVAKEAGEKWKNMTDEEKKPYLDKAAELKADYSKAMEGNGDYNEV 183 (232)
Q Consensus 106 p~~PKrP~sAy~lF~~e~R~~~k~~~P~~~~~~eisK~lge~Wk~Ls~eeK~~Y~~~A~~~k~~Y~ke~~~~~~y~~~ 183 (232)
|++||||+||||+|+.+.|..|+..||++ ++.+|+++||++|+.||+++|++|.++|..++.+|..+|+ .|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~---~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYP---NYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCS---SCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhh---ccccc
Confidence 67899999999999999999999999998 9999999999999999999999999999999999999999 99654
No 40
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=98.59 E-value=7.5e-09 Score=77.47 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCcccccccccCCCccccccCCCCchhHhhH---hhhcCCccc---hhhh-hhchHHHhhhhHHHhhhhh
Q 026832 1 MPSSSKSNAPKPRKRVDAQSASTSSATLMRGRDGSAFARCE---ECNKNVPVA---LISM-HSCSLDAKIKMNLEAQVVE 73 (232)
Q Consensus 1 ~~~~~~~~~~~~rkr~~~~~~~~~~~~~~r~~dgsaf~~ce---~~~~~~~va---~~~~-~~cs~~WK~ls~~Ek~~y~ 73 (232)
||+.++..+.+.+++... ++..++|..++..+...+ .+...+|.. +..+ +.|+..|+.||+.||++|.
T Consensus 1 ~~~~~~~~~k~~~~k~~k-----dp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~ 75 (97)
T 2lhj_A 1 MAGASDRTGVRRPRKAKK-----DPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYE 75 (97)
T ss_dssp CCCCSSSSSCCCTTCTTS-----CCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSS
T ss_pred CCCccccccccccccCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 788888877766655543 456788877766655433 223344543 4455 7999999999999999999
Q ss_pred hhhhhccchhhhhhCCCC
Q 026832 74 KPAEINKKKPAERKKPTS 91 (232)
Q Consensus 74 ~~a~~~k~~~ye~~~~~~ 91 (232)
++|+.++ .+|..++..|
T Consensus 76 ~~A~~~k-~~y~~e~~~y 92 (97)
T 2lhj_A 76 RMSDEDR-VRYEREKAEY 92 (97)
T ss_dssp HHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHH
Confidence 9999999 9999988776
No 41
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.7e-08 Score=73.82 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=48.8
Q ss_pred ccccccCCCCchhHhh---HhhhcCCccc---hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 25 SATLMRGRDGSAFARC---EECNKNVPVA---LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 25 ~~~~~r~~dgsaf~~c---e~~~~~~~va---~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
+..++|+..+..|... ..+....|.. +.++ +.|+.+|+.|++.||++|.++|+.++ .+|..+|..|
T Consensus 13 p~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~Y 85 (86)
T 2eqz_A 13 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADK-VRYDREMKDY 85 (86)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHc
Confidence 4567876654333322 2334455554 4566 89999999999999999999999999 9999988665
No 42
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.56 E-value=3.4e-08 Score=71.64 Aligned_cols=71 Identities=24% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCccccccCCCCchhHhhH---hhhcCCccc---hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCCh
Q 026832 23 TSSATLMRGRDGSAFARCE---ECNKNVPVA---LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTEP 94 (232)
Q Consensus 23 ~~~~~~~r~~dgsaf~~ce---~~~~~~~va---~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~~ 94 (232)
+++..++|..++..|...+ .+...+|.. +.++ +.|+.+|+.||+.||++|.++|+.++ .+|..+|..|..+
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~y~~~ 80 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK-ARYEREMKTYIPP 80 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHH-HHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 3556788876554443333 334556654 3555 89999999999999999999999999 9999999999654
No 43
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.55 E-value=7.3e-08 Score=71.14 Aligned_cols=67 Identities=13% Similarity=-0.026 Sum_probs=48.9
Q ss_pred CccccccCCCCchhHhhH---hhhcCCcc-chhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 24 SSATLMRGRDGSAFARCE---ECNKNVPV-ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~ce---~~~~~~~v-a~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
+++.++|..++..|...+ .+...+|. .+.++ ++|+.+|+.|++.+|++|.++|+.++ .+|..+|..+
T Consensus 17 dp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~~ 88 (90)
T 1wgf_A 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALK-AQSERKSGPS 88 (90)
T ss_dssp CCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT-TTTCCCCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 456788875443333222 22344444 34444 89999999999999999999999999 9999998766
No 44
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=98.52 E-value=3.8e-08 Score=73.38 Aligned_cols=60 Identities=12% Similarity=-0.040 Sum_probs=50.6
Q ss_pred CCchhHhh-----HhhhcCCccchhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCC
Q 026832 33 DGSAFARC-----EECNKNVPVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (232)
Q Consensus 33 dgsaf~~c-----e~~~~~~~va~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~ 93 (232)
=.|||.++ +......|..+.++ +.||++|+.||+.||++|+++|+.++ .+|+++|..|..
T Consensus 8 P~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK-~rYekEm~~Y~~ 73 (91)
T 1l8y_A 8 PKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQ-KRYERELSEMRA 73 (91)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHH-HHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 45788766 34455666677777 89999999999999999999999999 999999999954
No 45
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=98.40 E-value=1e-07 Score=70.76 Aligned_cols=67 Identities=19% Similarity=0.072 Sum_probs=48.3
Q ss_pred CccccccCCCCchhHhhHhh---hcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 24 SSATLMRGRDGSAFARCEEC---NKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~ce~~---~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
++..++|..++..+...+.+ ...+|.. +.++ +.|+..|+.||+.||++|.++|+.++ .+|..++..|
T Consensus 17 dp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~e~~~Y 88 (93)
T 1cg7_A 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADK-KRYESEKELY 88 (93)
T ss_dssp CSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHH-HHTTHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44677876554433332332 2234433 3444 79999999999999999999999999 9999988776
No 46
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=98.39 E-value=6.8e-08 Score=67.24 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=43.8
Q ss_pred cccCCCCchhHhhH---hhhcCCccchhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 28 LMRGRDGSAFARCE---ECNKNVPVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 28 ~~r~~dgsaf~~ce---~~~~~~~va~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
++|+.++..|...+ .+....| .++ +.|+..|+.||+.||++|.++|+.++ .+|+.+|..|
T Consensus 3 PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k-~~Y~~e~~~y 66 (67)
T 3fgh_A 3 PKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDE-TRYHNEMKSW 66 (67)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 56655443333222 2233333 345 89999999999999999999999999 9999988665
No 47
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.39 E-value=1.2e-07 Score=72.54 Aligned_cols=66 Identities=15% Similarity=0.006 Sum_probs=47.8
Q ss_pred ccc-ccCCCCchhHhhHhhhcCCccchhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 26 ATL-MRGRDGSAFARCEECNKNVPVALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 26 ~~~-~r~~dgsaf~~ce~~~~~~~va~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
..+ +|...++.|...+.+.....+.+.++ +.|+.+|+.|++.||++|.++|+.++ .+|..++..|.
T Consensus 15 ~~P~KrP~say~lF~~e~r~~~k~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k-~~Y~~e~~~Y~ 82 (108)
T 1v64_A 15 GRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKK-KDYEVELLRFL 82 (108)
T ss_dssp TSCCCCCSSHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456 66554433332233322223445555 89999999999999999999999999 99999998884
No 48
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.34 E-value=5.1e-07 Score=66.04 Aligned_cols=66 Identities=12% Similarity=-0.028 Sum_probs=48.1
Q ss_pred ccccccCCCCchhHhhHh---hhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 25 SATLMRGRDGSAFARCEE---CNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 25 ~~~~~r~~dgsaf~~ce~---~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
+..++|..++..+...+. +....|.. +.++ ++|+.+|+.|++.||++|.++|+.++ .+|.+.+..|
T Consensus 15 p~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~~~~~~P~Y 85 (87)
T 2e6o_A 15 PNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALA-EEQKRLNPDC 85 (87)
T ss_dssp CSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHCcCC
Confidence 357888765443332232 23344432 3344 79999999999999999999999999 9999998877
No 49
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.29 E-value=4.4e-07 Score=66.15 Aligned_cols=47 Identities=6% Similarity=-0.089 Sum_probs=40.0
Q ss_pred cCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 45 KNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 45 ~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
...|.. +.++ ++||..|+.||+.+|++|.++|+.++ .+|..++..|.
T Consensus 23 ~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~~~~~Yk 71 (86)
T 2lef_A 23 AESTLKESAAINQILGRRWHALSREEQAKYYELARKER-QLHMQLYPGWS 71 (86)
T ss_dssp HHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHSTTCC
T ss_pred HHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHccccc
Confidence 334443 3444 79999999999999999999999999 99999999996
No 50
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.27 E-value=2.2e-07 Score=70.14 Aligned_cols=66 Identities=14% Similarity=-0.031 Sum_probs=48.5
Q ss_pred ccccccCCCCchhHhhHh---hhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 25 SATLMRGRDGSAFARCEE---CNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 25 ~~~~~r~~dgsaf~~ce~---~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
++.++|+.++..+...+. +...+|.. +.++ ++|+.+|+.|++.+|++|.++|+.++ .+|..++..|
T Consensus 15 p~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~Y 85 (102)
T 2co9_A 15 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAK-KEYLKQLAAY 85 (102)
T ss_dssp CCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 457788665443332232 23344443 3444 79999999999999999999999999 9999998887
No 51
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.27 E-value=2.9e-07 Score=69.55 Aligned_cols=64 Identities=9% Similarity=-0.082 Sum_probs=46.4
Q ss_pred ccccCCCCchhHhhHhhhc--CCc-cchhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 27 TLMRGRDGSAFARCEECNK--NVP-VALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 27 ~~~r~~dgsaf~~ce~~~~--~~~-va~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
.++|+..+..| .|.+|.. .++ +.+.++ +.|+.+|+.|++.||++|+++|+.++ .+|+.+|..|.
T Consensus 8 ~PKrP~say~l-F~~e~~~~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k-~~Y~~e~~~Y~ 75 (101)
T 1v63_A 8 PKKPPMNGYQK-FSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQ-RQYKVHLDLWV 75 (101)
T ss_dssp SCCCCSSSHHH-HHHHHHHHCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCCCCCHHHH-HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46665444333 3433321 222 334455 89999999999999999999999999 99999998883
No 52
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=98.26 E-value=2.3e-07 Score=65.02 Aligned_cols=47 Identities=28% Similarity=0.229 Sum_probs=39.7
Q ss_pred hcCCccc---hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 44 NKNVPVA---LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 44 ~~~~~va---~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
...+|.. +.++ +.||.+|+.||+.+|++|.++|+.++ .+|..+|..|
T Consensus 21 ~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~Y 71 (71)
T 1ckt_A 21 KKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK-ARYEREMKTY 71 (71)
T ss_dssp HHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHH-HHHHHHHTTC
T ss_pred HHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 4445554 3555 89999999999999999999999999 9999998776
No 53
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.25 E-value=5.5e-07 Score=64.08 Aligned_cols=69 Identities=13% Similarity=-0.038 Sum_probs=51.9
Q ss_pred CCccccccCCCCchhHhhHh---hhcCCcc-chhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 23 TSSATLMRGRDGSAFARCEE---CNKNVPV-ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 23 ~~~~~~~r~~dgsaf~~ce~---~~~~~~v-a~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
+++..++|+.++..+...+. +...+|. .+..+ +.||..|+.||+.+|++|.++|+.++ .+|..++..|.
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~e~~~y~ 75 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK-EKYEKDIAAYR 75 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHH-HHHHHHHTTSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 35567888776655543332 2334443 23444 79999999999999999999999999 99999999883
No 54
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.23 E-value=6.7e-07 Score=67.16 Aligned_cols=67 Identities=12% Similarity=-0.109 Sum_probs=49.6
Q ss_pred CccccccCCCCchhHhhH---hhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 24 SSATLMRGRDGSAFARCE---ECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~ce---~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
+++.++|+.++..+...+ .+....|.. +.++ ++||.+|+.||+.+|++|.++|+.++ .+|..+|..|
T Consensus 7 dp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~Y~~e~~~y 78 (99)
T 1k99_A 7 HPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREK-QEFERNLARF 78 (99)
T ss_dssp SSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHH-HHHHHHHGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 346788875544333333 334445543 4444 89999999999999999999999999 9999999888
No 55
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.4e-06 Score=64.34 Aligned_cols=68 Identities=15% Similarity=-0.005 Sum_probs=48.9
Q ss_pred ccccccCCCCchhHhhH---hhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCC
Q 026832 25 SATLMRGRDGSAFARCE---ECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (232)
Q Consensus 25 ~~~~~r~~dgsaf~~ce---~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~ 93 (232)
+..++|..++..|...+ .+...+|.. +.++ +.|+.+|+.|++.+|++|.++|+.++ .+|..++..|..
T Consensus 5 p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~e~~~y~~ 77 (92)
T 2cs1_A 5 SSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDL-ERYNSQMKRAIE 77 (92)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTT-HHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45677755544333222 223344443 3444 89999999999999999999999999 999999988843
No 56
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.09 E-value=1.7e-06 Score=62.39 Aligned_cols=68 Identities=12% Similarity=-0.093 Sum_probs=49.0
Q ss_pred CccccccCCCCchhHhhH---hhhcCCcc-chhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 24 SSATLMRGRDGSAFARCE---ECNKNVPV-ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~ce---~~~~~~~v-a~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
++..++|..++..+...+ .+....|. .+.++ ++|+..|+.||+.+|++|.++|+.++ .+|..++..|.
T Consensus 4 ~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~yk 76 (82)
T 1wz6_A 4 GSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYK-DAFMKANPGYR 76 (82)
T ss_dssp SCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHCCSCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHhHHhh
Confidence 445677765443333222 22333443 23444 79999999999999999999999999 99999999984
No 57
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=98.09 E-value=1.7e-06 Score=65.73 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=51.0
Q ss_pred CccccccCCCCchhHhhH---hhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCC
Q 026832 24 SSATLMRGRDGSAFARCE---ECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~ce---~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~ 93 (232)
++..++|+.++..|...+ .+....|.. +.++ ++|+..|+.|++.||++|.++|+.++ .+|..++..|.-
T Consensus 26 ~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~Yky 99 (106)
T 4euw_A 26 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLR-VQHKKDHPDYKY 99 (106)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHHHHHCTTCCC
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHhhhcCc
Confidence 445788877655554433 233344532 3344 89999999999999999999999999 999999999953
No 58
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=98.08 E-value=2e-06 Score=59.93 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=43.5
Q ss_pred cccCCCCchhHhh---HhhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 28 LMRGRDGSAFARC---EECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 28 ~~r~~dgsaf~~c---e~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
++|+.++..+... ..+....|.. +.++ +.|+..|+.||+.+|++|.++|+.++ .+|..++..|
T Consensus 3 ~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~Y 70 (71)
T 4a3n_A 3 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR-VQHMQDHPNY 70 (71)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHTTCC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHCcCc
Confidence 5565544433322 2334555543 3344 79999999999999999999999999 9999998877
No 59
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.06 E-value=1.9e-06 Score=61.03 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=47.7
Q ss_pred cccccCCCCchhHhhHhh---hcCCcc-chhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 26 ATLMRGRDGSAFARCEEC---NKNVPV-ALISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 26 ~~~~r~~dgsaf~~ce~~---~~~~~v-a~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
+.++|..++..+...+.+ ....|. .+.++ +.||..|+.||+.+|++|.++|+.++ .+|..++..|.
T Consensus 3 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~Yk 73 (76)
T 1hry_A 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ-AMHREKYPNYK 73 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHHHHSSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHH-HHHHHHCCCCC
Confidence 467776554443333322 333343 23344 79999999999999999999999999 99999998883
No 60
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=6.3e-06 Score=61.47 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=43.0
Q ss_pred cccccCCCCchhHhhHhhhcCC---ccchhhh-h---hchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCC
Q 026832 26 ATLMRGRDGSAFARCEECNKNV---PVALISM-H---SCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPT 90 (232)
Q Consensus 26 ~~~~r~~dgsaf~~ce~~~~~~---~va~~~~-~---~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~ 90 (232)
+.++|...++.|. |.++...+ .+.+.++ + .|+++|+.|++.||++|+++|+.++ .+|+..+..
T Consensus 9 ~~PKRP~sAf~lF-~~e~R~~ik~e~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K-~~y~kd~~~ 78 (93)
T 2cto_A 9 PNRKASRNAYYFF-VQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWR-AAQGKDPGP 78 (93)
T ss_dssp CCCCSSCCHHHHH-HHTTHHHHHHHTCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHH-HHHHHCSSC
T ss_pred CCCCCCCCHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHhccccc
Confidence 4567765443333 33331111 2334444 3 4699999999999999999999999 999998755
No 61
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.99 E-value=3.4e-06 Score=60.75 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=47.6
Q ss_pred cccccCCCCchhHhhH---hhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 26 ATLMRGRDGSAFARCE---ECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 26 ~~~~r~~dgsaf~~ce---~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
+.++|..++..+...+ .+....|.. +.++ +.||..|+.|++.+|++|.++|+.++ .+|..++..|.
T Consensus 5 ~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~~~Yk 75 (83)
T 3f27_D 5 SRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR-VQHMQDHPNYK 75 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHCTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHCCCCe
Confidence 4567766544443333 223344433 3444 79999999999999999999999999 99999999984
No 62
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.98 E-value=3.7e-06 Score=61.08 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=48.1
Q ss_pred cccccCCCCchhHhhHhh---hcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCC
Q 026832 26 ATLMRGRDGSAFARCEEC---NKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (232)
Q Consensus 26 ~~~~r~~dgsaf~~ce~~---~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~ 93 (232)
+.++|..++..+...+.+ ....|.. +.++ +.||..|+.||+.+|++|.++|+.++ .+|..++..|.-
T Consensus 3 ~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~~~~~Yk~ 74 (85)
T 1j46_A 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ-AMHREKYPNYKY 74 (85)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHCTTCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHCccccc
Confidence 456776544333322322 3334432 3344 79999999999999999999999999 999999999853
No 63
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.98 E-value=1.1e-06 Score=64.87 Aligned_cols=70 Identities=13% Similarity=-0.043 Sum_probs=50.8
Q ss_pred CCccccccCCCCchhHhhH---hhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCC
Q 026832 23 TSSATLMRGRDGSAFARCE---ECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (232)
Q Consensus 23 ~~~~~~~r~~dgsaf~~ce---~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~ 93 (232)
++++.++|..++..+...+ .+...+|.. +.++ +.|+.+|+.|++.+|++|.++|+.++ .+|..++..|..
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k-~~y~~e~~~Y~~ 77 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEK-QQYLKELWAYQQ 77 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHH-HHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 3456788866544443322 223344433 3444 79999999999999999999999999 999999988844
No 64
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.94 E-value=6e-06 Score=59.09 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=40.8
Q ss_pred hcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCCC
Q 026832 44 NKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTSTE 93 (232)
Q Consensus 44 ~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~~ 93 (232)
....|.. +.++ ++||..|+.||+.+|++|.++|+.++ .+|..++..|.-
T Consensus 22 ~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~y~~~~~~Yk~ 72 (80)
T 1gt0_D 22 AQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR-ALHMKEHPDYKY 72 (80)
T ss_dssp HTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHCTTCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHCccccc
Confidence 3445543 3444 79999999999999999999999999 999999999953
No 65
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=6.2e-06 Score=59.86 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=40.3
Q ss_pred CccccccCCCCchhHhh---HhhhcCCccc--hhhh-hhchHHHhhhhHHHhhhhhhhhhhcc
Q 026832 24 SSATLMRGRDGSAFARC---EECNKNVPVA--LISM-HSCSLDAKIKMNLEAQVVEKPAEINK 80 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~~c---e~~~~~~~va--~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k 80 (232)
++..++|...+..|... ..+...+|.. +.++ ++|+++|+.|++.||++|+++|+.+.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34567776544433222 2334556654 5566 89999999999999999999998886
No 66
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.89 E-value=3.5e-06 Score=59.40 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=46.3
Q ss_pred cccccCCCCchhHhhH---hhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 26 ATLMRGRDGSAFARCE---ECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 26 ~~~~r~~dgsaf~~ce---~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
+.++|..++..+...+ .+...+|.. +.++ +.||.+|+.| .+|++|.++|+.++ .+|..++..|.
T Consensus 2 ~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k-~~y~~e~~~Y~ 70 (73)
T 1wxl_A 2 HMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDK-QRYHDEMRNYK 70 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHH-HHHHTTTGGGT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3567765544443332 223445543 3444 8999999999 99999999999999 99999998883
No 67
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.88 E-value=9.1e-06 Score=57.85 Aligned_cols=64 Identities=9% Similarity=-0.037 Sum_probs=47.0
Q ss_pred cccCCCCchhHhh---HhhhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 28 LMRGRDGSAFARC---EECNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 28 ~~r~~dgsaf~~c---e~~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
++|+.++..+... ..+....|.. +.++ +.|+..|+.|++.+|++|.++|+.++ .+|..++..|.
T Consensus 3 iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k-~~y~~~~p~Yk 71 (79)
T 3u2b_C 3 IKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLR-LKHMADYPDYK 71 (79)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHCCCCe
Confidence 5665554333322 2334445543 3344 79999999999999999999999999 99999999984
No 68
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.73 E-value=1.7e-05 Score=56.82 Aligned_cols=65 Identities=17% Similarity=0.018 Sum_probs=46.7
Q ss_pred ccccCCCCchhHhhHh---hhcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCCC
Q 026832 27 TLMRGRDGSAFARCEE---CNKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTST 92 (232)
Q Consensus 27 ~~~r~~dgsaf~~ce~---~~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~~ 92 (232)
.++|..++..+...+. +....|.. +.++ +.|+..|+.|++.||++|.++|+.++ .+|..++..|.
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k-~~~~~~~p~Yk 73 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS-KQHLEKYPDYK 73 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHH-HHHHTTCSCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH-HHHHHHCCCCe
Confidence 4666554433332232 23344543 3344 79999999999999999999999999 99999999884
No 69
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.58 E-value=9.3e-06 Score=57.21 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=43.2
Q ss_pred ccccCCCCchhH-hhHhh----hcCCccc-hhhh-hhchHHHhhhhHHHhhhhhhhhhhccchhhhhhCCCC
Q 026832 27 TLMRGRDGSAFA-RCEEC----NKNVPVA-LISM-HSCSLDAKIKMNLEAQVVEKPAEINKKKPAERKKPTS 91 (232)
Q Consensus 27 ~~~r~~dgsaf~-~ce~~----~~~~~va-~~~~-~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~~~~~ 91 (232)
.++|+.+ +|. .|.++ ...+|.. +.++ +.|+.+|+.|++ |++|.++|+.++ .+|..++..|
T Consensus 3 ~PKrP~s--ay~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k-~~y~~~~~~Y 69 (73)
T 3nm9_A 3 KPKRPLS--AYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAK-DDYDRAVKEF 69 (73)
T ss_dssp CCCCCCC--HHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cCCCCCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHH-HHHHHHHHHH
Confidence 4666554 444 33222 3344433 3444 899999999997 999999999999 9999988766
No 70
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.50 E-value=3.1e-05 Score=57.37 Aligned_cols=61 Identities=10% Similarity=-0.105 Sum_probs=42.8
Q ss_pred CccccccCCCCchhH-hhHhh----hcCCccchhhhhhchHHHhhhhHHHhhhhhhhhhhccchhhhhh
Q 026832 24 SSATLMRGRDGSAFA-RCEEC----NKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEINKKKPAERK 87 (232)
Q Consensus 24 ~~~~~~r~~dgsaf~-~ce~~----~~~~~va~~~~~~cs~~WK~ls~~Ek~~y~~~a~~~k~~~ye~~ 87 (232)
+++.++|+. |||. .|.++ ...+|....++..++++|+.|++.+|++|+++|+.++ .+|...
T Consensus 19 DpnaPKRp~--sAf~lf~~e~R~kik~enP~~s~~~~eIse~Wk~ls~eeK~pY~~kA~~~K-~~h~~~ 84 (90)
T 2yuk_A 19 EEALGEMAT--VAPVLYTNINFPNLKEEFPDWTTRVKQIAKLWRKASSQERAPYVQKARDNR-AALRIN 84 (90)
T ss_dssp HHHHGGGCS--SSHHHHHHHHCTTHHHHCCSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHS
T ss_pred CCCCCCCCc--cHHHHHHHHhHHHHHHHCcCccchHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHhh
Confidence 457889876 4553 45333 3344443322456679999999999999999999999 777654
No 71
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=41.57 E-value=16 Score=30.04 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHH-HHHHhcCCChhhchHHHHHHHHH-HHHHHHHhcCCccchhh
Q 026832 132 PDSKGVTGVAKE-AGEKWKNMTDEEKKPYLDKAAEL-KADYSKAMEGNGDYNEV 183 (232)
Q Consensus 132 P~~~~~~eisK~-lge~Wk~Ls~eeK~~Y~~~A~~~-k~~Y~ke~~~~~~y~~~ 183 (232)
|.. ++..+++. ||.-|+.+|+++++.|.+..... ...|-..+. .|...
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~---~y~~q 119 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALA---NVRNQ 119 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSC
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHH---hhCCC
Confidence 444 66777665 68999999999999999887774 667889898 88754
No 72
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=24.39 E-value=28 Score=19.22 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.6
Q ss_pred CCCCCCcccc
Q 026832 7 SNAPKPRKRV 16 (232)
Q Consensus 7 ~~~~~~rkr~ 16 (232)
-.|||+|||+
T Consensus 18 eepprkrkrl 27 (28)
T 3ukw_C 18 EEPPRKRKRL 27 (28)
T ss_dssp GSCCSSCCCC
T ss_pred cCcchhhhcc
Confidence 4678888885
No 73
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=20.67 E-value=23 Score=32.62 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=4.9
Q ss_pred CCchhhhHH
Q 026832 113 PTAFFLFMD 121 (232)
Q Consensus 113 ~sAy~lF~~ 121 (232)
.-+||-|+.
T Consensus 309 ~~SFFnfFs 317 (417)
T 2ayu_A 309 IESFFNFFD 317 (417)
T ss_dssp CCCGGGGGS
T ss_pred CCCceeecC
Confidence 346666653
Done!