BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026833
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 95 GQPPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIE 152
PPASK S++A+P I V E + A+G E C +C EY G+VA E+PC H FH C+
Sbjct: 13 ANPPASKESIDALPEILVTE-DHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVS 71
Query: 153 KWLGINGSCPVCRYKMP 169
WL +G+CPVCR P
Sbjct: 72 IWLQKSGTCPVCRCMFP 88
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 99 ASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN 158
S S +PS + + ++ CVVC+ ++E ++ R +PC H+FHA C++KWL N
Sbjct: 1 GSSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60
Query: 159 GSCPVCR 165
+CP+CR
Sbjct: 61 RTCPICR 67
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 113 GESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168
G E G EC VC E+Y +GE R++PC H FH +CI WL + SCPVCR +
Sbjct: 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 60.5 bits (145), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 121 GGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGINGSCPVCRYKMPV 170
G EC VCL E E GE AR +P C H FHA C++ WLG + +CP+CR + V
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 53.9 bits (128), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165
+C +CL E GE R +PC H FH C+++WL N CP+CR
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 113 GESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170
G+ +E L C VCLE+++ + PCKH FH C+ KWL + CP+C MPV
Sbjct: 7 GKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN--MPV 62
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEEEESG 176
EC +C++ G +PC H F CI+KW + +CP+CR +M E SG
Sbjct: 17 ECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSG 66
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 40.8 bits (94), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171
C +CLE+ +A +PC H F CI +W+ N +CP+C K+PVE
Sbjct: 8 CPICLEDPSNYSMA--LPCLHAFCYVCITRWIRQNPTCPLC--KVPVE 51
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165
+C++C EY + V + C H F + CI +W+ CP+CR
Sbjct: 55 QCIIC-SEYFIEAVT--LNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165
+C++C EY + V + C H F + CI +W+ CP+CR
Sbjct: 55 QCIIC-SEYFIEAVT--LNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165
+C++C EY + V + C H F + CI +W+ CP+CR
Sbjct: 66 QCIIC-SEYFIEAVT--LNCAHSFCSYCINEWMKRKIECPICR 105
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 108 PSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYK 167
P + V ++ ++ L C +C E + + + + C H + + CI K+L CP C
Sbjct: 11 PGLAVMKTIDDLL--RCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTC--C 64
Query: 168 MPVEEEESGNKR 179
+ V E + N R
Sbjct: 65 VTVTEPDLKNNR 76
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 124 CVVCLEEYEVGEV-AREMPCKHKFHANCIEKWLGINGSCPVC 164
C +CLE+ V A +PC H H C E+ L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 124 CVVCLEEYEVGEV-AREMPCKHKFHANCIEKWLGINGSCPVCRY 166
C +CLE+ V A +PC H H C E+ L CP+C +
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIE--KWLGINGSCPVCRYKMPVEEEESG 176
EC +CL+ V V+ +PCKH F C++ WLG C +CR ++P + +SG
Sbjct: 17 ECAICLQTC-VHPVS--LPCKHVFCYLCVKGASWLG--KRCALCRQEIPEDFLDSG 67
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 31.6 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 124 CVVCLEEY----EVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168
C +C++ Y + G + C H F + C+ L +CP CR K+
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 31.2 bits (69), Expect = 0.45, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 124 CVVCLEEY----EVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168
C +C++ Y + G + C H F + C+ L +CP CR K+
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 0.85, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 124 CVVCLEEY----EVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168
C +C++ Y + G + C H F + C+ L +CP CR K+
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 CKHKFHANCIEKWLGINGSCPV 163
C H FH +CI +WL CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 CKHKFHANCIEKWLGINGSCPV 163
C H FH +CI +WL CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 142 CKHKFHANCIEKWLGINGSCPVCRYKMPVE 171
C H FH C+ W+ N CP+C+ V+
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 CKHKFHANCIEKWLGINGSCPV 163
C H FH +CI +WL CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 CKHKFHANCIEKWLGINGSCPV 163
C H FH +CI +WL CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 CKHKFHANCIEKWLGINGSCPV 163
C H FH +CI +WL CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 CKHKFHANCIEKWLGINGSCPV 163
C H FH +CI +WL CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 139 EMPCKHKFHANCIEKWLGINGS-CPVCRY 166
E CKH F CI + L + GS CP CRY
Sbjct: 38 ETSCKHLFCRICILRCLKVMGSYCPSCRY 66
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 CKHKFHANCIEKWLGINGSCPV 163
C H FH +CI +WL CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 158 NGSCPVCRYK-MP-----VEEEESGNKRDERRREIWV 188
+G CRY+ +P EE+ESG +E +R+IW+
Sbjct: 204 DGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWI 240
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 142 CKHKFHANCIEKWLGINGSCPVC 164
C H F CI ++L + CP+C
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 142 CKHKFHANCIEKWLGINGSCPVC 164
C H F CI ++L + CP+C
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 123 ECVVCLEEY----EVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168
C +C++ Y + G + C H F + C+ L +CP CR K+
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 123 ECVVCLEEY----EVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168
C +C++ Y + G + C H F + C+ L +CP CR K+
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|1U5U|A Chain A, The Structure Of An Allene Oxide Synthase Reveals A Novel
Use For A Catalase Fold
pdb|1U5U|B Chain B, The Structure Of An Allene Oxide Synthase Reveals A Novel
Use For A Catalase Fold
Length = 374
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 158 NGSCPVCRYK-MP-----VEEEESGNKRDERRREIWV 188
+G CRY+ +P EE+ESG +E +R+IW+
Sbjct: 204 DGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWI 240
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 142 CKHKFHANCIEKWLGINGSCPVC 164
C H F CI ++L + CP+C
Sbjct: 30 CLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
Length = 52
Score = 26.9 bits (58), Expect = 9.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI----NGSCPVCRYKMP 169
EC +C+E E+ ++ PC + C W I NG CP CR P
Sbjct: 2 ECPLCMEPLEIDDI-NFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYP 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,426,873
Number of Sequences: 62578
Number of extensions: 199241
Number of successful extensions: 245
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 43
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)