Query 026833
Match_columns 232
No_of_seqs 297 out of 1807
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 6.2E-15 1.3E-19 132.6 7.4 82 95-176 203-285 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 9.7E-15 2.1E-19 94.2 2.1 44 122-165 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 2.7E-12 5.8E-17 110.8 5.5 84 84-169 137-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.2 9.2E-12 2E-16 89.0 3.4 45 121-165 19-73 (73)
5 COG5540 RING-finger-containing 99.2 1.4E-11 3E-16 108.1 3.4 50 121-170 323-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 6.8E-12 1.5E-16 112.6 1.5 69 99-169 267-345 (491)
7 KOG0317 Predicted E3 ubiquitin 99.0 2.1E-10 4.6E-15 100.2 3.1 50 120-172 238-287 (293)
8 PF13920 zf-C3HC4_3: Zinc fing 98.9 6.2E-10 1.4E-14 73.5 3.1 46 121-169 2-48 (50)
9 PF13923 zf-C3HC4_2: Zinc fing 98.9 5.4E-10 1.2E-14 70.1 2.5 39 124-164 1-39 (39)
10 cd00162 RING RING-finger (Real 98.9 1.2E-09 2.5E-14 69.0 3.6 44 123-168 1-45 (45)
11 PLN03208 E3 ubiquitin-protein 98.9 7.5E-10 1.6E-14 92.4 3.5 48 120-170 17-80 (193)
12 KOG0804 Cytoplasmic Zn-finger 98.9 1.2E-09 2.7E-14 100.2 3.0 84 120-205 174-259 (493)
13 KOG0823 Predicted E3 ubiquitin 98.8 1.4E-09 3.1E-14 92.4 2.7 50 120-172 46-98 (230)
14 KOG0320 Predicted E3 ubiquitin 98.8 2.9E-09 6.3E-14 87.2 2.4 50 121-171 131-180 (187)
15 PF12861 zf-Apc11: Anaphase-pr 98.8 5.1E-09 1.1E-13 76.4 3.4 50 121-170 21-83 (85)
16 PF15227 zf-C3HC4_4: zinc fing 98.8 3.8E-09 8.1E-14 67.5 2.4 38 124-164 1-42 (42)
17 KOG0802 E3 ubiquitin ligase [P 98.8 2.3E-09 5E-14 103.1 1.9 50 119-168 289-340 (543)
18 PF14634 zf-RING_5: zinc-RING 98.8 6.3E-09 1.4E-13 67.0 3.2 44 123-166 1-44 (44)
19 PHA02926 zinc finger-like prot 98.7 5E-09 1.1E-13 88.8 2.6 51 119-169 168-230 (242)
20 smart00504 Ubox Modified RING 98.7 1.2E-08 2.6E-13 69.9 3.7 46 122-170 2-47 (63)
21 PF00097 zf-C3HC4: Zinc finger 98.7 8.5E-09 1.8E-13 65.0 2.3 39 124-164 1-41 (41)
22 smart00184 RING Ring finger. E 98.6 3.7E-08 7.9E-13 59.9 3.3 38 124-164 1-39 (39)
23 TIGR00599 rad18 DNA repair pro 98.6 3.6E-08 7.7E-13 91.0 3.6 49 120-171 25-73 (397)
24 COG5574 PEX10 RING-finger-cont 98.4 8.9E-08 1.9E-12 83.0 2.2 50 121-173 215-266 (271)
25 COG5194 APC11 Component of SCF 98.4 2.3E-07 5.1E-12 66.4 3.1 30 141-170 53-82 (88)
26 KOG2164 Predicted E3 ubiquitin 98.3 2.3E-07 5.1E-12 86.8 2.8 50 121-173 186-240 (513)
27 KOG0287 Postreplication repair 98.3 1.4E-07 3.1E-12 84.3 1.2 49 121-172 23-71 (442)
28 KOG1734 Predicted RING-contain 98.3 1.5E-07 3.2E-12 81.8 0.7 51 121-171 224-283 (328)
29 PF13445 zf-RING_UBOX: RING-ty 98.3 4.8E-07 1E-11 58.0 2.8 38 124-162 1-43 (43)
30 KOG0828 Predicted E3 ubiquitin 98.3 2.7E-07 5.8E-12 86.0 1.9 51 120-170 570-635 (636)
31 KOG2930 SCF ubiquitin ligase, 98.3 4.2E-07 9.1E-12 68.2 1.9 49 121-169 46-108 (114)
32 KOG1493 Anaphase-promoting com 98.2 3.2E-07 6.9E-12 65.2 0.9 50 120-169 19-81 (84)
33 COG5432 RAD18 RING-finger-cont 98.2 5.4E-07 1.2E-11 79.1 2.2 45 121-168 25-69 (391)
34 smart00744 RINGv The RING-vari 98.2 1E-06 2.2E-11 58.1 3.0 42 123-165 1-49 (49)
35 KOG2177 Predicted E3 ubiquitin 98.2 6.3E-07 1.4E-11 77.1 1.9 43 120-165 12-54 (386)
36 PF04564 U-box: U-box domain; 98.1 1.1E-06 2.5E-11 62.5 2.1 49 121-172 4-53 (73)
37 TIGR00570 cdk7 CDK-activating 98.1 2.2E-06 4.7E-11 76.6 3.7 52 121-172 3-57 (309)
38 COG5219 Uncharacterized conser 98.0 1.1E-06 2.4E-11 87.1 0.3 67 103-169 1451-1523(1525)
39 PF11793 FANCL_C: FANCL C-term 98.0 1.4E-06 3E-11 61.7 -0.5 50 121-170 2-67 (70)
40 KOG4265 Predicted E3 ubiquitin 97.9 5.9E-06 1.3E-10 74.5 2.8 48 119-169 288-336 (349)
41 KOG0824 Predicted E3 ubiquitin 97.8 1.1E-05 2.3E-10 71.4 2.0 49 121-172 7-56 (324)
42 KOG4172 Predicted E3 ubiquitin 97.8 6.3E-06 1.4E-10 55.0 0.3 46 121-169 7-54 (62)
43 PF14835 zf-RING_6: zf-RING of 97.7 1.4E-05 3E-10 55.3 1.0 50 120-173 6-55 (65)
44 KOG0827 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 72.3 1.7 45 122-166 5-53 (465)
45 KOG4445 Uncharacterized conser 97.6 1.8E-05 3.9E-10 69.9 1.1 91 80-174 74-191 (368)
46 KOG0311 Predicted E3 ubiquitin 97.6 8.8E-06 1.9E-10 73.3 -1.1 52 118-171 40-92 (381)
47 KOG0825 PHD Zn-finger protein 97.5 2E-05 4.3E-10 77.2 -0.1 48 122-169 124-171 (1134)
48 KOG1785 Tyrosine kinase negati 97.5 3.6E-05 7.7E-10 70.5 1.5 47 122-171 370-418 (563)
49 KOG1645 RING-finger-containing 97.5 7.1E-05 1.5E-09 68.7 3.2 46 121-166 4-53 (463)
50 KOG0978 E3 ubiquitin ligase in 97.5 3.6E-05 7.7E-10 75.4 1.2 48 121-171 643-691 (698)
51 KOG1039 Predicted E3 ubiquitin 97.4 6.8E-05 1.5E-09 68.3 2.0 48 121-168 161-220 (344)
52 KOG4159 Predicted E3 ubiquitin 97.1 0.00028 6.1E-09 65.5 2.5 48 120-170 83-130 (398)
53 KOG1941 Acetylcholine receptor 97.0 0.00019 4.1E-09 65.7 0.7 48 119-166 363-413 (518)
54 KOG3970 Predicted E3 ubiquitin 97.0 0.00053 1.1E-08 58.6 3.2 59 118-177 47-113 (299)
55 PF11789 zf-Nse: Zinc-finger o 97.0 0.00039 8.5E-09 47.2 1.7 41 121-163 11-53 (57)
56 KOG2660 Locus-specific chromos 96.9 0.00024 5.2E-09 63.6 0.3 49 121-171 15-63 (331)
57 KOG0297 TNF receptor-associate 96.9 0.00044 9.6E-09 64.3 1.9 54 119-174 19-72 (391)
58 KOG2879 Predicted E3 ubiquitin 96.7 0.0012 2.6E-08 58.0 3.0 49 120-170 238-288 (298)
59 PF14570 zf-RING_4: RING/Ubox 96.7 0.0011 2.3E-08 43.4 2.0 44 124-168 1-47 (48)
60 COG5152 Uncharacterized conser 96.6 0.00082 1.8E-08 56.4 1.1 44 122-168 197-240 (259)
61 KOG1428 Inhibitor of type V ad 96.5 0.0016 3.4E-08 67.9 2.6 51 119-169 3484-3544(3738)
62 KOG0801 Predicted E3 ubiquitin 96.4 0.00092 2E-08 54.4 0.5 40 109-148 165-204 (205)
63 PF12906 RINGv: RING-variant d 96.4 0.0019 4.2E-08 42.0 1.7 40 124-164 1-47 (47)
64 KOG1940 Zn-finger protein [Gen 96.4 0.0021 4.6E-08 56.8 2.3 51 120-171 157-208 (276)
65 KOG1813 Predicted E3 ubiquitin 96.3 0.0013 2.9E-08 58.2 0.9 44 122-168 242-285 (313)
66 PF05883 Baculo_RING: Baculovi 96.2 0.0017 3.7E-08 51.4 0.9 36 121-156 26-67 (134)
67 PHA02862 5L protein; Provision 96.2 0.0035 7.7E-08 50.1 2.4 46 121-170 2-54 (156)
68 KOG4692 Predicted E3 ubiquitin 96.1 0.0035 7.5E-08 57.0 2.1 49 119-170 420-468 (489)
69 KOG1002 Nucleotide excision re 95.9 0.0032 6.9E-08 59.9 1.4 51 119-172 534-589 (791)
70 KOG1814 Predicted E3 ubiquitin 95.9 0.0042 9.1E-08 57.3 1.9 47 121-167 184-238 (445)
71 COG5175 MOT2 Transcriptional r 95.8 0.0053 1.1E-07 55.5 2.2 54 120-173 13-68 (480)
72 PF10367 Vps39_2: Vacuolar sor 95.8 0.0035 7.6E-08 46.9 0.9 31 121-152 78-108 (109)
73 PHA02825 LAP/PHD finger-like p 95.7 0.009 2E-07 48.6 3.1 48 120-171 7-61 (162)
74 PF04641 Rtf2: Rtf2 RING-finge 95.7 0.018 3.8E-07 50.7 4.9 91 80-171 56-163 (260)
75 KOG3039 Uncharacterized conser 95.7 0.011 2.4E-07 51.3 3.5 52 121-172 221-273 (303)
76 COG5222 Uncharacterized conser 95.6 0.0068 1.5E-07 53.9 2.2 44 122-168 275-321 (427)
77 KOG4275 Predicted E3 ubiquitin 95.6 0.0035 7.6E-08 55.5 0.3 41 121-168 300-341 (350)
78 PF08746 zf-RING-like: RING-li 95.6 0.0088 1.9E-07 38.2 1.9 41 124-164 1-43 (43)
79 KOG3268 Predicted E3 ubiquitin 95.3 0.0096 2.1E-07 49.3 1.8 51 121-171 165-230 (234)
80 KOG1571 Predicted E3 ubiquitin 95.2 0.0095 2.1E-07 54.2 1.6 45 118-168 302-346 (355)
81 KOG4739 Uncharacterized protei 95.1 0.0081 1.8E-07 51.9 0.7 44 123-169 5-48 (233)
82 COG5236 Uncharacterized conser 94.9 0.018 3.9E-07 52.3 2.6 49 117-168 57-107 (493)
83 PHA03096 p28-like protein; Pro 94.9 0.014 3E-07 52.1 1.8 45 122-166 179-231 (284)
84 PF07800 DUF1644: Protein of u 94.9 0.024 5.2E-07 46.1 3.0 51 121-174 2-96 (162)
85 KOG1952 Transcription factor N 94.7 0.014 3E-07 58.3 1.4 47 120-166 190-244 (950)
86 KOG4185 Predicted E3 ubiquitin 94.7 0.022 4.7E-07 50.6 2.5 47 122-168 4-54 (296)
87 PF10272 Tmpp129: Putative tra 94.5 0.11 2.5E-06 47.7 6.8 31 142-172 311-354 (358)
88 KOG0826 Predicted E3 ubiquitin 94.3 0.03 6.6E-07 50.4 2.6 48 120-169 299-346 (357)
89 PF03854 zf-P11: P-11 zinc fin 94.3 0.02 4.3E-07 37.3 1.0 44 123-171 4-48 (50)
90 KOG0827 Predicted E3 ubiquitin 93.9 0.0046 9.9E-08 56.7 -3.6 52 121-172 196-248 (465)
91 KOG2114 Vacuolar assembly/sort 93.7 0.034 7.3E-07 55.6 1.7 41 122-167 841-881 (933)
92 PF14447 Prok-RING_4: Prokaryo 92.6 0.067 1.5E-06 35.9 1.4 45 122-171 8-52 (55)
93 KOG2932 E3 ubiquitin ligase in 92.4 0.054 1.2E-06 48.6 1.0 42 123-168 92-133 (389)
94 KOG1001 Helicase-like transcri 92.1 0.065 1.4E-06 53.2 1.2 45 122-170 455-501 (674)
95 PF14446 Prok-RING_1: Prokaryo 91.7 0.18 3.9E-06 33.8 2.6 39 121-163 5-44 (54)
96 KOG3800 Predicted E3 ubiquitin 91.4 0.18 4E-06 44.8 3.1 46 123-168 2-50 (300)
97 COG5220 TFB3 Cdk activating ki 91.1 0.11 2.5E-06 45.0 1.6 47 120-166 9-61 (314)
98 KOG1100 Predicted E3 ubiquitin 91.1 0.14 3E-06 43.7 2.0 38 124-168 161-199 (207)
99 KOG3161 Predicted E3 ubiquitin 90.9 0.084 1.8E-06 51.5 0.6 42 122-166 12-54 (861)
100 KOG3002 Zn finger protein [Gen 90.9 0.17 3.7E-06 45.5 2.5 42 121-169 48-91 (299)
101 KOG2034 Vacuolar sorting prote 90.1 0.15 3.3E-06 51.3 1.7 35 120-155 816-850 (911)
102 KOG0309 Conserved WD40 repeat- 88.7 0.25 5.4E-06 49.2 1.9 25 139-163 1045-1069(1081)
103 KOG2817 Predicted E3 ubiquitin 88.3 0.39 8.6E-06 44.4 2.9 45 122-166 335-382 (394)
104 KOG3899 Uncharacterized conser 88.2 0.21 4.6E-06 44.5 1.0 32 142-173 325-369 (381)
105 KOG0298 DEAD box-containing he 88.2 0.16 3.5E-06 53.0 0.3 44 121-166 1153-1196(1394)
106 KOG3053 Uncharacterized conser 87.8 0.18 3.9E-06 44.1 0.3 49 120-168 19-81 (293)
107 COG5183 SSM4 Protein involved 87.0 0.36 7.9E-06 48.4 1.9 54 120-174 11-71 (1175)
108 KOG1812 Predicted E3 ubiquitin 86.2 0.31 6.7E-06 45.3 1.0 37 121-157 146-183 (384)
109 KOG4367 Predicted Zn-finger pr 84.5 0.53 1.1E-05 44.3 1.6 34 120-156 3-36 (699)
110 PF05290 Baculo_IE-1: Baculovi 84.4 0.85 1.8E-05 36.2 2.5 49 121-171 80-134 (140)
111 KOG1609 Protein involved in mR 83.9 0.5 1.1E-05 41.8 1.2 49 121-169 78-134 (323)
112 PF02891 zf-MIZ: MIZ/SP-RING z 83.5 1.2 2.6E-05 29.2 2.5 43 122-167 3-50 (50)
113 KOG4362 Transcriptional regula 82.3 0.39 8.5E-06 47.5 -0.2 48 121-171 21-71 (684)
114 KOG0802 E3 ubiquitin ligase [P 81.0 0.82 1.8E-05 44.3 1.5 48 119-173 477-524 (543)
115 KOG4718 Non-SMC (structural ma 80.4 0.98 2.1E-05 38.6 1.6 46 122-169 182-227 (235)
116 KOG1829 Uncharacterized conser 79.8 0.66 1.4E-05 45.3 0.4 42 121-165 511-557 (580)
117 KOG3113 Uncharacterized conser 79.1 3.3 7.2E-05 36.4 4.4 89 82-173 58-162 (293)
118 KOG1812 Predicted E3 ubiquitin 76.7 1.2 2.6E-05 41.4 1.2 44 120-164 305-351 (384)
119 PF13901 DUF4206: Domain of un 76.6 1.9 4.1E-05 36.5 2.3 40 121-165 152-196 (202)
120 KOG0825 PHD Zn-finger protein 75.4 1.6 3.5E-05 43.9 1.7 52 119-170 94-155 (1134)
121 KOG0269 WD40 repeat-containing 71.9 3.5 7.6E-05 41.3 3.0 41 122-163 780-820 (839)
122 KOG1815 Predicted E3 ubiquitin 70.4 2.3 5.1E-05 40.2 1.5 35 121-157 70-104 (444)
123 PF07975 C1_4: TFIIH C1-like d 69.8 3.3 7.2E-05 27.4 1.7 42 124-165 2-50 (51)
124 PF06906 DUF1272: Protein of u 69.3 8.9 0.00019 25.9 3.6 48 121-170 5-53 (57)
125 KOG2068 MOT2 transcription fac 68.5 4.8 0.0001 36.6 3.0 48 122-169 250-298 (327)
126 smart00249 PHD PHD zinc finger 65.5 4.1 8.9E-05 24.8 1.5 31 123-153 1-31 (47)
127 KOG2807 RNA polymerase II tran 63.1 5.2 0.00011 36.4 2.1 44 123-166 332-375 (378)
128 PF00628 PHD: PHD-finger; Int 60.5 4.2 9.2E-05 26.0 0.8 42 124-165 2-49 (51)
129 KOG4218 Nuclear hormone recept 59.2 6.9 0.00015 36.0 2.2 47 120-167 14-76 (475)
130 KOG3579 Predicted E3 ubiquitin 58.9 5.4 0.00012 35.7 1.5 38 121-159 268-307 (352)
131 KOG0956 PHD finger protein AF1 56.0 5.6 0.00012 39.6 1.1 53 116-168 112-181 (900)
132 COG5109 Uncharacterized conser 54.1 11 0.00023 34.4 2.5 45 122-166 337-384 (396)
133 PF04216 FdhE: Protein involve 54.0 2.4 5.1E-05 37.7 -1.6 46 121-166 172-219 (290)
134 PF06844 DUF1244: Protein of u 53.7 8 0.00017 26.9 1.3 12 145-156 11-22 (68)
135 KOG2066 Vacuolar assembly/sort 53.4 5.5 0.00012 40.2 0.6 44 121-165 784-831 (846)
136 PF10497 zf-4CXXC_R1: Zinc-fin 52.8 13 0.00028 28.2 2.4 46 121-166 7-69 (105)
137 KOG3005 GIY-YIG type nuclease 51.0 8.3 0.00018 34.1 1.3 47 122-168 183-242 (276)
138 TIGR00622 ssl1 transcription f 50.7 16 0.00035 28.1 2.7 44 122-165 56-110 (112)
139 PF07191 zinc-ribbons_6: zinc- 48.4 2 4.4E-05 30.3 -2.3 39 122-168 2-40 (70)
140 PF01363 FYVE: FYVE zinc finge 47.8 8.8 0.00019 26.2 0.8 36 120-155 8-44 (69)
141 smart00132 LIM Zinc-binding do 47.7 16 0.00034 21.2 1.9 37 123-168 1-37 (39)
142 COG3813 Uncharacterized protei 45.7 26 0.00057 24.9 2.9 48 122-172 6-55 (84)
143 KOG3799 Rab3 effector RIM1 and 44.8 4.9 0.00011 32.0 -0.9 47 120-166 64-115 (169)
144 KOG3842 Adaptor protein Pellin 44.1 24 0.00052 32.2 3.1 51 120-170 340-415 (429)
145 PF13832 zf-HC5HC2H_2: PHD-zin 43.3 21 0.00045 26.6 2.3 31 121-153 55-87 (110)
146 PF06750 DiS_P_DiS: Bacterial 43.1 24 0.00051 26.0 2.5 37 122-170 34-70 (92)
147 KOG3039 Uncharacterized conser 42.9 17 0.00038 31.9 2.0 32 122-156 44-75 (303)
148 KOG0824 Predicted E3 ubiquitin 41.7 7.9 0.00017 34.9 -0.2 47 120-168 104-150 (324)
149 PF04710 Pellino: Pellino; In 41.4 8.8 0.00019 35.8 0.0 46 120-168 276-338 (416)
150 PF00412 LIM: LIM domain; Int 40.4 17 0.00037 23.4 1.3 40 124-172 1-40 (58)
151 KOG2169 Zn-finger transcriptio 40.3 62 0.0013 32.2 5.7 95 71-172 251-359 (636)
152 KOG1245 Chromatin remodeling c 39.9 9.9 0.00022 41.2 0.1 50 119-168 1106-1159(1404)
153 PF13771 zf-HC5HC2H: PHD-like 39.6 14 0.00031 26.4 0.9 34 120-153 35-68 (90)
154 PF11023 DUF2614: Protein of u 37.7 34 0.00073 26.4 2.7 28 153-180 80-107 (114)
155 COG4847 Uncharacterized protei 36.9 35 0.00076 25.6 2.6 34 121-155 6-39 (103)
156 PLN02248 cellulose synthase-li 34.3 33 0.00072 36.3 2.8 53 121-173 124-181 (1135)
157 PF13717 zinc_ribbon_4: zinc-r 34.0 20 0.00044 21.7 0.8 14 122-135 3-16 (36)
158 PF09943 DUF2175: Uncharacteri 33.1 36 0.00079 25.7 2.2 34 122-156 3-36 (101)
159 KOG2789 Putative Zn-finger pro 32.6 18 0.00039 33.8 0.6 32 122-154 75-106 (482)
160 KOG4323 Polycomb-like PHD Zn-f 32.2 15 0.00032 35.1 -0.1 47 120-166 167-223 (464)
161 PF04423 Rad50_zn_hook: Rad50 32.2 17 0.00037 23.8 0.2 13 160-172 22-34 (54)
162 cd00065 FYVE FYVE domain; Zinc 32.2 32 0.00069 22.3 1.6 34 122-155 3-37 (57)
163 PF07649 C1_3: C1-like domain; 32.2 34 0.00073 19.5 1.5 29 123-151 2-30 (30)
164 KOG1729 FYVE finger containing 32.0 8.9 0.00019 34.4 -1.5 35 123-157 216-250 (288)
165 PF14569 zf-UDP: Zinc-binding 31.0 65 0.0014 23.2 3.1 48 121-168 9-61 (80)
166 KOG2231 Predicted E3 ubiquitin 30.9 38 0.00082 33.9 2.5 43 123-168 2-51 (669)
167 KOG3726 Uncharacterized conser 30.6 25 0.00055 35.1 1.2 41 122-165 655-696 (717)
168 smart00064 FYVE Protein presen 30.6 35 0.00077 23.0 1.7 35 121-155 10-45 (68)
169 KOG4185 Predicted E3 ubiquitin 30.3 9.3 0.0002 33.7 -1.7 47 121-167 207-265 (296)
170 PF14353 CpXC: CpXC protein 29.2 54 0.0012 25.1 2.7 46 122-170 2-50 (128)
171 COG3492 Uncharacterized protei 29.0 28 0.0006 25.9 0.9 12 145-156 42-53 (104)
172 KOG1815 Predicted E3 ubiquitin 28.9 16 0.00036 34.5 -0.3 38 121-158 226-268 (444)
173 PF10571 UPF0547: Uncharacteri 28.7 16 0.00034 20.6 -0.3 9 123-131 2-10 (26)
174 PF13719 zinc_ribbon_5: zinc-r 28.2 33 0.00072 20.7 1.0 14 122-135 3-16 (37)
175 PLN02189 cellulose synthase 28.1 63 0.0014 34.0 3.6 49 121-169 34-87 (1040)
176 PF10235 Cript: Microtubule-as 28.0 36 0.00078 25.2 1.4 36 122-169 45-80 (90)
177 PF14311 DUF4379: Domain of un 27.8 38 0.00082 22.1 1.4 23 141-164 33-55 (55)
178 TIGR01562 FdhE formate dehydro 27.7 14 0.00031 33.3 -0.9 41 121-166 184-232 (305)
179 PRK03564 formate dehydrogenase 27.5 22 0.00048 32.2 0.2 45 121-166 187-234 (309)
180 PF04710 Pellino: Pellino; In 25.4 23 0.00051 33.1 0.0 49 121-169 328-401 (416)
181 KOG0956 PHD finger protein AF1 24.9 52 0.0011 33.1 2.2 30 137-166 41-70 (900)
182 PF12773 DZR: Double zinc ribb 24.7 54 0.0012 20.7 1.7 10 159-168 30-39 (50)
183 PLN02638 cellulose synthase A 24.5 71 0.0015 33.8 3.2 48 121-168 17-69 (1079)
184 PF09889 DUF2116: Uncharacteri 24.1 44 0.00096 22.7 1.2 16 157-172 2-17 (59)
185 KOG2071 mRNA cleavage and poly 23.5 39 0.00084 33.2 1.1 36 119-154 511-556 (579)
186 KOG4443 Putative transcription 23.3 32 0.0007 34.2 0.5 26 141-166 40-70 (694)
187 COG2835 Uncharacterized conser 22.5 37 0.00081 23.2 0.6 14 160-173 10-23 (60)
188 PF06937 EURL: EURL protein; 22.3 70 0.0015 28.4 2.3 44 122-165 31-77 (285)
189 cd00350 rubredoxin_like Rubred 22.0 46 0.00099 19.5 0.8 9 158-166 17-25 (33)
190 PLN02436 cellulose synthase A 22.0 94 0.002 32.9 3.5 49 121-169 36-89 (1094)
191 PF14169 YdjO: Cold-inducible 21.9 44 0.00096 22.8 0.8 13 158-170 39-51 (59)
192 PRK11827 hypothetical protein; 21.8 33 0.0007 23.5 0.2 16 154-169 4-19 (60)
193 PRK11088 rrmA 23S rRNA methylt 21.6 57 0.0012 28.3 1.7 25 122-146 3-27 (272)
194 KOG2979 Protein involved in DN 21.5 58 0.0013 28.7 1.7 44 121-166 176-221 (262)
195 smart00647 IBR In Between Ring 21.4 25 0.00054 23.1 -0.5 14 141-154 45-58 (64)
196 PF02318 FYVE_2: FYVE-type zin 21.3 46 0.00099 25.5 0.9 46 120-166 53-102 (118)
197 KOG3816 Cell differentiation r 21.2 42 0.0009 31.5 0.8 27 125-154 92-118 (526)
198 PF05605 zf-Di19: Drought indu 21.2 50 0.0011 21.5 1.0 13 121-133 2-14 (54)
199 PRK11595 DNA utilization prote 20.7 77 0.0017 26.9 2.3 37 123-167 7-43 (227)
200 PF10146 zf-C4H2: Zinc finger- 20.6 65 0.0014 27.9 1.8 21 147-167 197-217 (230)
201 KOG2041 WD40 repeat protein [G 20.3 57 0.0012 33.2 1.5 45 120-168 1130-1184(1189)
202 PLN02400 cellulose synthase 20.3 83 0.0018 33.3 2.7 49 121-169 36-89 (1085)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.2e-15 Score=132.62 Aligned_cols=82 Identities=32% Similarity=0.744 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHcCCceeccCchhhhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC-CCCCcCcccCCCcc
Q 026833 95 GQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING-SCPVCRYKMPVEEE 173 (232)
Q Consensus 95 g~~~as~~~i~~l~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-tCP~CR~~~~~~~~ 173 (232)
+...+.+..+..+|..++....+......|+||+|+|..++++++|||+|.||..||++||.... .||+||..+.....
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 45578899999999999988655444469999999999999999999999999999999997665 59999998876665
Q ss_pred ccc
Q 026833 174 ESG 176 (232)
Q Consensus 174 ~~~ 176 (232)
...
T Consensus 283 ~~~ 285 (348)
T KOG4628|consen 283 SEP 285 (348)
T ss_pred CCC
Confidence 543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.49 E-value=9.7e-15 Score=94.15 Aligned_cols=44 Identities=57% Similarity=1.278 Sum_probs=39.9
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
++|+||++.|..+..+..++|+|.||..||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999998888888999999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.30 E-value=2.7e-12 Score=110.82 Aligned_cols=84 Identities=26% Similarity=0.547 Sum_probs=59.0
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHcCCceeccCc--hhhhcCCCCcccccccccCce-----eeeeCCCCcccHHHHHHHHh
Q 026833 84 ETLLRNFAGKDGQPPASKASVEAMPSIKVGES--EEEALGGECVVCLEEYEVGEV-----AREMPCKHKFHANCIEKWLG 156 (232)
Q Consensus 84 e~ll~~~~~~~g~~~as~~~i~~l~~~~~~~~--~~~~~~~~C~IC~e~~~~~~~-----~~~lpC~H~fh~~Ci~~wl~ 156 (232)
++++..+....+ ...+..++.+|.+..... .....+.+|+||++.+..+.. ...++|+|.||..||.+|++
T Consensus 137 e~~~~~~~~~k~--~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 137 EDMFYAIINKKG--KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred HHHHHHHHHHhc--chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh
Confidence 344555543322 238888899998754322 122346799999999765431 23456999999999999999
Q ss_pred cCCCCCCcCcccC
Q 026833 157 INGSCPVCRYKMP 169 (232)
Q Consensus 157 ~~~tCP~CR~~~~ 169 (232)
.+.+||+||..+.
T Consensus 215 ~~~tCPlCR~~~~ 227 (238)
T PHA02929 215 EKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCCCEee
Confidence 9999999998764
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.21 E-value=9.2e-12 Score=88.97 Aligned_cols=45 Identities=40% Similarity=0.895 Sum_probs=36.1
Q ss_pred CCCCcccccccccC----------ceeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 121 GGECVVCLEEYEVG----------EVAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 121 ~~~C~IC~e~~~~~----------~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
++.|+||++.|... ..+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999332 2345567999999999999999999999998
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.4e-11 Score=108.07 Aligned_cols=50 Identities=40% Similarity=1.097 Sum_probs=46.1
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHh-cCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG-INGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~CR~~~~~ 170 (232)
+.+|+||++.|...++++++||.|.||..|+.+|+. .+..||+||.++|+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 579999999999888999999999999999999996 67789999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.8e-12 Score=112.62 Aligned_cols=69 Identities=25% Similarity=0.696 Sum_probs=52.1
Q ss_pred CCHHHHHcCCceeccCchhhhcCCCCcccccc-cccC---------ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 99 ASKASVEAMPSIKVGESEEEALGGECVVCLEE-YEVG---------EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 99 as~~~i~~l~~~~~~~~~~~~~~~~C~IC~e~-~~~~---------~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
+.|+.-+-++++...+. ...+..|.||+++ |..+ .+.+.|||||.+|..|++.|++++.+||+||.++
T Consensus 267 ~~kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 267 ATKDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred HhhHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 44555555665554443 3357899999999 4433 2446799999999999999999999999999985
Q ss_pred C
Q 026833 169 P 169 (232)
Q Consensus 169 ~ 169 (232)
.
T Consensus 345 i 345 (491)
T COG5243 345 I 345 (491)
T ss_pred c
Confidence 3
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.1e-10 Score=100.16 Aligned_cols=50 Identities=32% Similarity=0.759 Sum_probs=43.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
....|.+|++....+.. +||||.||+.||..|...+..||+||..+.+.+
T Consensus 238 a~~kC~LCLe~~~~pSa---TpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSA---TPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCCCc---CcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 45799999999766544 999999999999999999999999999876544
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.94 E-value=6.2e-10 Score=73.52 Aligned_cols=46 Identities=33% Similarity=0.793 Sum_probs=38.7
Q ss_pred CCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
+..|.||++... .+..+||+|. ||..|+..|++....||+||.++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 468999999854 3677899999 999999999999999999998774
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=5.4e-10 Score=70.10 Aligned_cols=39 Identities=46% Similarity=1.025 Sum_probs=33.0
Q ss_pred CcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCc
Q 026833 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVC 164 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~C 164 (232)
|+||++.+.. .+..++|||.||..|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 34678999999999999999888899998
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.92 E-value=1.2e-09 Score=69.03 Aligned_cols=44 Identities=45% Similarity=1.130 Sum_probs=36.0
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhc-CCCCCCcCccc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKM 168 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~ 168 (232)
.|+||++.+. ......+|+|.||..|+..|+.. ...||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 33445569999999999999987 67899998753
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.91 E-value=7.5e-10 Score=92.42 Aligned_cols=48 Identities=29% Similarity=0.620 Sum_probs=39.3
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc----------------CCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI----------------NGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----------------~~tCP~CR~~~~~ 170 (232)
.+.+|+||++.+..+ ++++|+|.||+.||..|+.. ...||+||..+..
T Consensus 17 ~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 357999999998765 44789999999999999842 2479999998854
No 12
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.85 E-value=1.2e-09 Score=100.21 Aligned_cols=84 Identities=27% Similarity=0.551 Sum_probs=66.9
Q ss_pred cCCCCcccccccccCc-eeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC-cccccchhhhhcccceEEeeecCCCC
Q 026833 120 LGGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE-EEESGNKRDERRREIWVSFSISGGGR 197 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (232)
+-++|+||+|.++... .+....|.|.||..|+..|. ..+||+||+-..+. .+............+|.+++++..|+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~p~~ve~~~c~~c~~~~~LwicliCg~vgc 251 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQSPSVVESSLCLACGCTEDLWICLICGNVGC 251 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcCcchhhhhhhhhhcccccEEEEEEccceec
Confidence 3579999999998765 34455699999999999997 67999999866532 23445566777889999999999999
Q ss_pred CCCCCCCC
Q 026833 198 RSGENSNQ 205 (232)
Q Consensus 198 ~~~~~~~~ 205 (232)
++....+.
T Consensus 252 grY~eghA 259 (493)
T KOG0804|consen 252 GRYKEGHA 259 (493)
T ss_pred ccccchhH
Confidence 98776665
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.4e-09 Score=92.43 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=40.3
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC---CCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN---GSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~---~tCP~CR~~~~~~~ 172 (232)
...+|.||++.-+++ +++.|||.||+.||.+||..+ +.||+||..|..++
T Consensus 46 ~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 357899999986654 447799999999999999643 46999999886554
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.9e-09 Score=87.19 Aligned_cols=50 Identities=28% Similarity=0.626 Sum_probs=41.7
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|+|||+.+.... .....|||+||..||+..++....||+|++.+..+
T Consensus 131 ~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 468999999987532 24478999999999999999999999999876543
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.77 E-value=5.1e-09 Score=76.39 Aligned_cols=50 Identities=32% Similarity=0.727 Sum_probs=38.5
Q ss_pred CCCCcccccccccCc----------eeeeeCCCCcccHHHHHHHHhc---CCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGE----------VAREMPCKHKFHANCIEKWLGI---NGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~----------~~~~lpC~H~fh~~Ci~~wl~~---~~tCP~CR~~~~~ 170 (232)
++.|.||+..|+..- .+..-.|+|.||..||.+||.. +..||+||+.+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 678999999987321 2223359999999999999964 4689999987643
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.77 E-value=3.8e-09 Score=67.50 Aligned_cols=38 Identities=34% Similarity=0.889 Sum_probs=28.7
Q ss_pred CcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCc
Q 026833 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVC 164 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~C 164 (232)
|+||++.|..+. .|+|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv---~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPV---SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEE---E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcc---ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999998764 49999999999999999543 369987
No 17
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.3e-09 Score=103.12 Aligned_cols=50 Identities=34% Similarity=0.953 Sum_probs=43.7
Q ss_pred hcCCCCcccccccccCce--eeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 119 ALGGECVVCLEEYEVGEV--AREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~--~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
..+..|+||++.+..+.. .++++|+|.||..|+..|+++..+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 447899999999887543 56799999999999999999999999999844
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.76 E-value=6.3e-09 Score=66.98 Aligned_cols=44 Identities=34% Similarity=0.848 Sum_probs=37.9
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
.|.||++.|.......+++|+|+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955556788999999999999999866678999984
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.73 E-value=5e-09 Score=88.78 Aligned_cols=51 Identities=27% Similarity=0.677 Sum_probs=37.6
Q ss_pred hcCCCCcccccccccC-----ceeeee-CCCCcccHHHHHHHHhcC------CCCCCcCcccC
Q 026833 119 ALGGECVVCLEEYEVG-----EVAREM-PCKHKFHANCIEKWLGIN------GSCPVCRYKMP 169 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~-----~~~~~l-pC~H~fh~~Ci~~wl~~~------~tCP~CR~~~~ 169 (232)
..+.+|.||++..... ....+| +|+|.||..||..|...+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3468999999986322 122334 699999999999999643 35999998653
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.72 E-value=1.2e-08 Score=69.94 Aligned_cols=46 Identities=26% Similarity=0.405 Sum_probs=40.4
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
..|+||++.+..+ ..++|||+|+..||..|++.+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 5799999999876 347999999999999999888899999988743
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.70 E-value=8.5e-09 Score=65.00 Aligned_cols=39 Identities=41% Similarity=1.055 Sum_probs=33.4
Q ss_pred CcccccccccCceeeeeCCCCcccHHHHHHHHh--cCCCCCCc
Q 026833 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG--INGSCPVC 164 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~--~~~tCP~C 164 (232)
|+||++.+..+. ..++|+|.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987653 5689999999999999997 45579998
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=3.7e-08 Score=59.89 Aligned_cols=38 Identities=47% Similarity=1.176 Sum_probs=32.0
Q ss_pred CcccccccccCceeeeeCCCCcccHHHHHHHHh-cCCCCCCc
Q 026833 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG-INGSCPVC 164 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~C 164 (232)
|+||++.. .....++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 3456689999999999999997 56679987
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=3.6e-08 Score=91.04 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=42.0
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
....|+||++.|..+. +++|+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~Pv---itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVPV---LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCcc---CCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 3579999999997653 489999999999999998888999999877543
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.9e-08 Score=82.98 Aligned_cols=50 Identities=36% Similarity=0.737 Sum_probs=40.8
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHH-HHhcCCC-CCCcCcccCCCcc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEK-WLGINGS-CPVCRYKMPVEEE 173 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~-wl~~~~t-CP~CR~~~~~~~~ 173 (232)
+..|+||++....+ ..++|||+||..||.. |-..+.- ||+||+.+.+++.
T Consensus 215 d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 56899999996654 4489999999999999 8766654 9999998776553
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.39 E-value=2.3e-07 Score=66.39 Aligned_cols=30 Identities=40% Similarity=0.992 Sum_probs=27.3
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 141 PCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 141 pC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
-|.|.||..||.+||..++.||++|+.+..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 499999999999999999999999987643
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.3e-07 Score=86.81 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=39.4
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC-----CCCCCcCcccCCCcc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN-----GSCPVCRYKMPVEEE 173 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-----~tCP~CR~~~~~~~~ 173 (232)
+..|+||++....+. .+.|||+||..||.+++... ..||+||..+..++.
T Consensus 186 ~~~CPICL~~~~~p~---~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCccc---ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 579999999966543 36699999999999987433 479999998877543
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.34 E-value=1.4e-07 Score=84.28 Aligned_cols=49 Identities=29% Similarity=0.713 Sum_probs=42.6
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
-..|.||.++|..+ .++||+|.||.-||+.+|..+..||.|+..+....
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 46899999999876 34899999999999999999999999998775443
No 28
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-07 Score=81.85 Aligned_cols=51 Identities=31% Similarity=0.819 Sum_probs=41.7
Q ss_pred CCCCcccccccccCc-------eeeeeCCCCcccHHHHHHHH--hcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGE-------VAREMPCKHKFHANCIEKWL--GINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~-------~~~~lpC~H~fh~~Ci~~wl--~~~~tCP~CR~~~~~~ 171 (232)
+..|+||-..+.... +.-.|.|+|+||..||+.|. .++.+||.|+..+..+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 568999999876554 55678999999999999997 5677999998776443
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=4.8e-07 Score=58.01 Aligned_cols=38 Identities=32% Similarity=0.785 Sum_probs=22.1
Q ss_pred CcccccccccCc-eeeeeCCCCcccHHHHHHHHhcC----CCCC
Q 026833 124 CVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLGIN----GSCP 162 (232)
Q Consensus 124 C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~----~tCP 162 (232)
|+||++ |...+ ..++|+|||+|+..||.+|++.. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75533 45779999999999999999643 2576
No 30
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.7e-07 Score=85.96 Aligned_cols=51 Identities=31% Similarity=0.862 Sum_probs=39.8
Q ss_pred cCCCCcccccccccCc--------------eeeeeCCCCcccHHHHHHHHh-cCCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGE--------------VAREMPCKHKFHANCIEKWLG-INGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~--------------~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~CR~~~~~ 170 (232)
....|+||+..+.... .-...||.|+||..|+.+|+. .+-.||+||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3468999999864321 123469999999999999998 45589999999875
No 31
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.2e-07 Score=68.16 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=36.9
Q ss_pred CCCCccccccccc-------------Cceeeee-CCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEV-------------GEVAREM-PCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~-------------~~~~~~l-pC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
-+.|+||+..+-+ .+..... -|.|.||..||.+||+.+..||+|.++..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 4689999876521 1222222 39999999999999999999999987653
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.2e-07 Score=65.17 Aligned_cols=50 Identities=34% Similarity=0.758 Sum_probs=36.6
Q ss_pred cCCCCcccccccccCc---------eeeee-CCCCcccHHHHHHHHhc---CCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGE---------VAREM-PCKHKFHANCIEKWLGI---NGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~---------~~~~l-pC~H~fh~~Ci~~wl~~---~~tCP~CR~~~~ 169 (232)
.++.|-||+-.|...- ...++ -|.|.||..||.+|+.. +..||+||+.+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3468999999986321 11122 39999999999999953 457999998764
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.22 E-value=5.4e-07 Score=79.15 Aligned_cols=45 Identities=33% Similarity=0.664 Sum_probs=39.9
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
-..|.||-+.|..+. .++|||.||.-||+..|..+..||+||.+.
T Consensus 25 ~lrC~IC~~~i~ip~---~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPC---ETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeecce---ecccccchhHHHHHHHhcCCCCCccccccH
Confidence 368999999988763 388999999999999999999999999865
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.22 E-value=1e-06 Score=58.12 Aligned_cols=42 Identities=26% Similarity=0.801 Sum_probs=32.2
Q ss_pred CCcccccccccCceeeeeCCC-----CcccHHHHHHHHhc--CCCCCCcC
Q 026833 123 ECVVCLEEYEVGEVAREMPCK-----HKFHANCIEKWLGI--NGSCPVCR 165 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~-----H~fh~~Ci~~wl~~--~~tCP~CR 165 (232)
.|.||++ +..+....+.||. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3334445578975 88999999999954 44899995
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.3e-07 Score=77.05 Aligned_cols=43 Identities=35% Similarity=0.728 Sum_probs=38.3
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
+...|+||++.|..+ ++++|+|.||..|+..++.....||.||
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 467999999999987 5699999999999999887556899999
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.14 E-value=1.1e-06 Score=62.52 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=37.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-CCCCCCcCcccCCCc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~~~~~ 172 (232)
...|+|+.+.|.++. +++|||+|.+.||..|+.. +.+||+|+..+...+
T Consensus 4 ~f~CpIt~~lM~dPV---i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 4 EFLCPITGELMRDPV---ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGB-TTTSSB-SSEE---EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred ccCCcCcCcHhhCce---eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 468999999998764 4899999999999999987 789999998876543
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=2.2e-06 Score=76.57 Aligned_cols=52 Identities=21% Similarity=0.488 Sum_probs=37.5
Q ss_pred CCCCcccccc-cccCc-eeeeeCCCCcccHHHHHHHH-hcCCCCCCcCcccCCCc
Q 026833 121 GGECVVCLEE-YEVGE-VAREMPCKHKFHANCIEKWL-GINGSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~-~~~~~-~~~~lpC~H~fh~~Ci~~wl-~~~~tCP~CR~~~~~~~ 172 (232)
+..||||+.. +..+. ++.+.+|||.||..|+...+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4689999996 33333 22333799999999999965 44568999998775443
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.03 E-value=1.1e-06 Score=87.13 Aligned_cols=67 Identities=27% Similarity=0.648 Sum_probs=44.3
Q ss_pred HHHcCCceeccCchhhhcCCCCccccccccc-Cce--e-eeeCCCCcccHHHHHHHHhc--CCCCCCcCcccC
Q 026833 103 SVEAMPSIKVGESEEEALGGECVVCLEEYEV-GEV--A-REMPCKHKFHANCIEKWLGI--NGSCPVCRYKMP 169 (232)
Q Consensus 103 ~i~~l~~~~~~~~~~~~~~~~C~IC~e~~~~-~~~--~-~~lpC~H~fh~~Ci~~wl~~--~~tCP~CR~~~~ 169 (232)
..+.+.-.+..-..+...-.+|+||+..+.. ... - +.-.|+|.||..|+.+|++. +.+||+||..++
T Consensus 1451 ~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1451 FMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred HHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3444444443333344456799999998752 111 1 22339999999999999965 458999997764
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.95 E-value=1.4e-06 Score=61.68 Aligned_cols=50 Identities=30% Similarity=0.679 Sum_probs=23.3
Q ss_pred CCCCcccccccc-cCcee-ee---eCCCCcccHHHHHHHHhc----C-------CCCCCcCcccCC
Q 026833 121 GGECVVCLEEYE-VGEVA-RE---MPCKHKFHANCIEKWLGI----N-------GSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~-~~~~~-~~---lpC~H~fh~~Ci~~wl~~----~-------~tCP~CR~~~~~ 170 (232)
+.+|.||+..+. .+... .+ -.|+..||..||..||.. + +.||.|+.+|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999999865 33221 11 249999999999999942 1 159999987743
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=5.9e-06 Score=74.53 Aligned_cols=48 Identities=31% Similarity=0.767 Sum_probs=39.5
Q ss_pred hcCCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
+...+|.||+.+. ..+.+|||.|. .|..|.+...-+++.||+||+++.
T Consensus 288 ~~gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 3467999999984 45678999997 899999887667889999999773
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.1e-05 Score=71.36 Aligned_cols=49 Identities=27% Similarity=0.592 Sum_probs=39.4
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC-CCCCCcCcccCCCc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN-GSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~tCP~CR~~~~~~~ 172 (232)
..+|+||+.....+ ..|+|+|.||..||+.-.... .+|++||+++...-
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 57899999986544 559999999999998877544 56999999886543
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=6.3e-06 Score=54.96 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=34.5
Q ss_pred CCCCcccccccccCceeeeeCCCCc-ccHHHHHHHH-hcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWL-GINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl-~~~~tCP~CR~~~~ 169 (232)
+++|.||++.-.+ .+...|||. +|..|-.+.+ ..+..||+||.++.
T Consensus 7 ~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4799999997432 333569997 7889966544 57889999998763
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.69 E-value=1.4e-05 Score=55.27 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=25.6
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEEE 173 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~~ 173 (232)
.-..|.+|.+.+..+ +....|.|.||..||..-+. ..||+|+.+....+.
T Consensus 6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI 55 (65)
T ss_dssp HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence 457899999998876 33456999999999988664 359999977655443
No 44
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.7e-05 Score=72.25 Aligned_cols=45 Identities=27% Similarity=0.861 Sum_probs=34.9
Q ss_pred CCCcccccccccCceeeeeC-CCCcccHHHHHHHHhcC---CCCCCcCc
Q 026833 122 GECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIN---GSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~---~tCP~CR~ 166 (232)
..|.||.+-+.....+.... |||+||..|+.+|+... .+||+|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 57999966665555554455 99999999999999653 47999993
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.62 E-value=1.8e-05 Score=69.94 Aligned_cols=91 Identities=24% Similarity=0.587 Sum_probs=60.4
Q ss_pred cccHHHHHHHHh----CCCCCCCCCHHHHHcCCceeccCchhhhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHH
Q 026833 80 TSSLETLLRNFA----GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWL 155 (232)
Q Consensus 80 ~~~le~ll~~~~----~~~g~~~as~~~i~~l~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl 155 (232)
.+-|+++.+++. ...| -|.--+.|+....... + .......|.||+--|.......+++|.|.||..|+.++|
T Consensus 74 d~~~~~i~~~~~~iikq~~g-~pii~~lie~~~e~LT-~--nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 74 DPEFREIQRQIQEIIKQNSG-MPIICQLIEHCSEFLT-E--NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred cHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHcc-c--CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHH
Confidence 445777777665 2233 3334444444333211 1 122356899999999988878889999999999998886
Q ss_pred h-----------------------cCCCCCCcCcccCCCccc
Q 026833 156 G-----------------------INGSCPVCRYKMPVEEEE 174 (232)
Q Consensus 156 ~-----------------------~~~tCP~CR~~~~~~~~~ 174 (232)
. ....||+||..+..+...
T Consensus 150 ~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s 191 (368)
T KOG4445|consen 150 TECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS 191 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence 3 012699999988665543
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=8.8e-06 Score=73.30 Aligned_cols=52 Identities=31% Similarity=0.563 Sum_probs=39.7
Q ss_pred hhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh-cCCCCCCcCcccCCC
Q 026833 118 EALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG-INGSCPVCRYKMPVE 171 (232)
Q Consensus 118 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~CR~~~~~~ 171 (232)
...+..|+||++.+... +...-|.|.||..||..-++ ..+.||.||+.+..+
T Consensus 40 ~~~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 33467999999998754 22344999999999988885 467899999877433
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.52 E-value=2e-05 Score=77.15 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=40.6
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
..|++|+..|.........+|+|.||..||..|-+...+||+||..+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 578899888876655555679999999999999999999999998663
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.52 E-value=3.6e-05 Score=70.50 Aligned_cols=47 Identities=26% Similarity=0.745 Sum_probs=38.8
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhc--CCCCCCcCcccCCC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI--NGSCPVCRYKMPVE 171 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~tCP~CR~~~~~~ 171 (232)
..|.||-+. ...+++-||||..|..|+..|-.. ..+||.||.++.-.
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 469999886 456788999999999999999843 56899999987543
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=7.1e-05 Score=68.67 Aligned_cols=46 Identities=39% Similarity=0.973 Sum_probs=37.0
Q ss_pred CCCCcccccccccCc--eeeeeCCCCcccHHHHHHHHhc--CCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGE--VAREMPCKHKFHANCIEKWLGI--NGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~--~~~~lpC~H~fh~~Ci~~wl~~--~~tCP~CR~ 166 (232)
...|+||++.+.... ++..+.|+|.|...||.+||.+ ...||.|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 468999999976543 5566779999999999999952 347999975
No 50
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=3.6e-05 Score=75.36 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=38.6
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHh-cCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG-INGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~CR~~~~~~ 171 (232)
-..|++|-..+.. +.+..|+|+||..|+.+.+. ++..||.|...+.+-
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4789999976553 45577999999999999995 567899999877543
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=6.8e-05 Score=68.27 Aligned_cols=48 Identities=38% Similarity=0.830 Sum_probs=36.4
Q ss_pred CCCCcccccccccCc----eeeeeC-CCCcccHHHHHHHH--hc-----CCCCCCcCccc
Q 026833 121 GGECVVCLEEYEVGE----VAREMP-CKHKFHANCIEKWL--GI-----NGSCPVCRYKM 168 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~----~~~~lp-C~H~fh~~Ci~~wl--~~-----~~tCP~CR~~~ 168 (232)
+.+|.||++...... ...++| |.|.||..||..|- .+ .+.||.||...
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 579999999865432 123345 99999999999998 33 46799999744
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00028 Score=65.49 Aligned_cols=48 Identities=31% Similarity=0.679 Sum_probs=41.3
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
.+.+|.||+..+..+.. +||||.||..||.+-+....-||.||..+..
T Consensus 83 sef~c~vc~~~l~~pv~---tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVV---TPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCcc---ccccccccHHHHHHHhccCCCCccccccccc
Confidence 45799999999876644 7999999999999988878889999998864
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.04 E-value=0.00019 Score=65.67 Aligned_cols=48 Identities=35% Similarity=0.713 Sum_probs=39.3
Q ss_pred hcCCCCcccccccccC-ceeeeeCCCCcccHHHHHHHHhcC--CCCCCcCc
Q 026833 119 ALGGECVVCLEEYEVG-EVAREMPCKHKFHANCIEKWLGIN--GSCPVCRY 166 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~-~~~~~lpC~H~fh~~Ci~~wl~~~--~tCP~CR~ 166 (232)
+.+..|-.|-+.+... +....|||.|+||..|+...|.++ .+||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4568999999987543 456679999999999999999655 47999994
No 54
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00053 Score=58.61 Aligned_cols=59 Identities=20% Similarity=0.481 Sum_probs=45.9
Q ss_pred hhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc--------CCCCCCcCcccCCCcccccc
Q 026833 118 EALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI--------NGSCPVCRYKMPVEEEESGN 177 (232)
Q Consensus 118 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--------~~tCP~CR~~~~~~~~~~~~ 177 (232)
.+....|..|-..+..++.++ |-|-|.||+.|+..|-.. ...||.|..++.+.......
T Consensus 47 sDY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsP 113 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSP 113 (299)
T ss_pred cCCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccch
Confidence 345679999999998887644 779999999999999743 23699999988776654433
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.99 E-value=0.00039 Score=47.20 Aligned_cols=41 Identities=24% Similarity=0.595 Sum_probs=28.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc--CCCCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI--NGSCPV 163 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~tCP~ 163 (232)
...|+|.+..|..+ ++...|+|+|-...|..||.. ...||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 57899999999876 555689999999999999943 346998
No 56
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.92 E-value=0.00024 Score=63.63 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|.+|..+|.+... +.-|-|.||..||...|....+||.|...+...
T Consensus 15 ~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4689999999886643 244999999999999999999999998766443
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.91 E-value=0.00044 Score=64.26 Aligned_cols=54 Identities=28% Similarity=0.558 Sum_probs=44.4
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCccc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEEEE 174 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~~~ 174 (232)
.++..|+||...+..+.. ...|+|.||..|+..|+..+..||.|+..+...+..
T Consensus 19 ~~~l~C~~C~~vl~~p~~--~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQ--TTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCC--CCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 346899999999887643 257999999999999998899999998877655544
No 58
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0012 Score=57.96 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=37.9
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc--CCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI--NGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~tCP~CR~~~~~ 170 (232)
.+.+|++|-+.-..+ ....+|+|+||..||..-+.. ..+||.|...+..
T Consensus 238 ~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 357999999985544 345679999999999887643 3689999877653
No 59
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.71 E-value=0.0011 Score=43.41 Aligned_cols=44 Identities=30% Similarity=0.643 Sum_probs=22.1
Q ss_pred CcccccccccCceeeeeC--CCCcccHHHHHHHHh-cCCCCCCcCccc
Q 026833 124 CVVCLEEYEVGEVAREMP--CKHKFHANCIEKWLG-INGSCPVCRYKM 168 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lp--C~H~fh~~Ci~~wl~-~~~tCP~CR~~~ 168 (232)
|++|.+++.... ...+| |++.+|..|+..-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984332 23355 889999999988885 578999999753
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.59 E-value=0.00082 Score=56.42 Aligned_cols=44 Identities=27% Similarity=0.543 Sum_probs=37.9
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
..|.||..+|..+.. ..|||.||..|...-++....|-+|.+..
T Consensus 197 F~C~iCKkdy~spvv---t~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVV---TECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhh---hhcchhHHHHHHHHHhccCCcceecchhh
Confidence 489999999987643 77999999999999888888999997654
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.50 E-value=0.0016 Score=67.92 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=39.6
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----------CCCCCcCcccC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----------GSCPVCRYKMP 169 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----------~tCP~CR~~~~ 169 (232)
..++.|.||+.+--.......|.|+|.||..|.+..|+++ -.||+|+.++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3467899999885555566779999999999998766432 16999998763
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.00092 Score=54.43 Aligned_cols=40 Identities=30% Similarity=0.712 Sum_probs=31.8
Q ss_pred ceeccCchhhhcCCCCcccccccccCceeeeeCCCCcccH
Q 026833 109 SIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHA 148 (232)
Q Consensus 109 ~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~ 148 (232)
+..+.++.......+|.||+|++..+..+..|||-.+||.
T Consensus 165 rlsYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 165 RLSYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3444444444556799999999999999999999999985
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.40 E-value=0.0019 Score=42.03 Aligned_cols=40 Identities=38% Similarity=0.940 Sum_probs=26.4
Q ss_pred CcccccccccCceeeeeCCC--C---cccHHHHHHHHh--cCCCCCCc
Q 026833 124 CVVCLEEYEVGEVAREMPCK--H---KFHANCIEKWLG--INGSCPVC 164 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~--H---~fh~~Ci~~wl~--~~~tCP~C 164 (232)
|-||++.-.... ..+.||. - ..|..|+.+|+. ...+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998866544 3446754 3 789999999996 44579887
No 64
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.36 E-value=0.0021 Score=56.80 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=40.4
Q ss_pred cCCCCcccccccccCc-eeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
....|+||.+.+-... .+..++|+|..|..|+......+.+||+|.+ +...
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 3456999999965443 5567899999999999999877799999988 4433
No 65
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0013 Score=58.18 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=38.0
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
..|.||...|..+.. ..|+|.||..|-..-++....|.+|.+.+
T Consensus 242 f~c~icr~~f~~pVv---t~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVV---TKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchh---hcCCceeehhhhccccccCCcceeccccc
Confidence 359999999987644 78999999999988888888999998765
No 66
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.23 E-value=0.0017 Score=51.37 Aligned_cols=36 Identities=19% Similarity=0.495 Sum_probs=29.8
Q ss_pred CCCCcccccccccCceeeeeCCC------CcccHHHHHHHHh
Q 026833 121 GGECVVCLEEYEVGEVAREMPCK------HKFHANCIEKWLG 156 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~------H~fh~~Ci~~wl~ 156 (232)
..+|.||++.+.....++.++|+ |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 46899999999875566777776 8899999999953
No 67
>PHA02862 5L protein; Provisional
Probab=96.16 E-value=0.0035 Score=50.11 Aligned_cols=46 Identities=20% Similarity=0.644 Sum_probs=34.4
Q ss_pred CCCCcccccccccCceeeeeCCC-----CcccHHHHHHHHhc--CCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCK-----HKFHANCIEKWLGI--NGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~-----H~fh~~Ci~~wl~~--~~tCP~CR~~~~~ 170 (232)
++.|-||++.-.+. .-||. ...|..|+.+|+.. +..|++|+.+...
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899999985332 25664 56899999999954 4579999987644
No 68
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0035 Score=56.95 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=40.9
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
.++..|+||+.. +......||+|.-|+.||.+.|...+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 356799999886 3445568999999999999999999999999987653
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.93 E-value=0.0032 Score=59.88 Aligned_cols=51 Identities=31% Similarity=0.638 Sum_probs=38.8
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh-----cCCCCCCcCcccCCCc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG-----INGSCPVCRYKMPVEE 172 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~-----~~~tCP~CR~~~~~~~ 172 (232)
..+.+|-+|-+.-+. .....|.|.||+.||..++. .+-+||+|-..+..+.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 345789999988544 34477999999999988874 2458999988776553
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0042 Score=57.34 Aligned_cols=47 Identities=26% Similarity=0.606 Sum_probs=37.9
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC--------CCCCCcCcc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN--------GSCPVCRYK 167 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~--------~tCP~CR~~ 167 (232)
...|.||++.......++.+||+|+||..|+..++... -.||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 46899999998766788889999999999999988421 258877653
No 71
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.82 E-value=0.0053 Score=55.52 Aligned_cols=54 Identities=26% Similarity=0.572 Sum_probs=38.4
Q ss_pred cCCCCcccccccccCce-eeeeCCCCcccHHHHHHHH-hcCCCCCCcCcccCCCcc
Q 026833 120 LGGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKWL-GINGSCPVCRYKMPVEEE 173 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~wl-~~~~tCP~CR~~~~~~~~ 173 (232)
+++.|+.|++.++..++ ..-.|||...|.-|+...- ..++.||-||.....+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 35569999999876653 3345689888888875544 346799999986654443
No 72
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.81 E-value=0.0035 Score=46.90 Aligned_cols=31 Identities=32% Similarity=0.667 Sum_probs=26.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHH
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIE 152 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~ 152 (232)
+..|++|-..+.. ....+.||+|.||..|+.
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 5789999999876 556778999999999974
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.75 E-value=0.009 Score=48.58 Aligned_cols=48 Identities=31% Similarity=0.827 Sum_probs=34.7
Q ss_pred cCCCCcccccccccCceeeeeCCCC-----cccHHHHHHHHhc--CCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKH-----KFHANCIEKWLGI--NGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H-----~fh~~Ci~~wl~~--~~tCP~CR~~~~~~ 171 (232)
.+..|-||.+.-.. . .-||.. ..|..|+.+|+.. ...|++|+.+....
T Consensus 7 ~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 46799999988432 1 247553 5699999999954 45799998876443
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.67 E-value=0.018 Score=50.66 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=56.7
Q ss_pred cccHHHHHHHHhCCCC--CCCCCHHHHHcCCc---eeccCc-----------hhhhcCCCCcccccccccCceeee-eCC
Q 026833 80 TSSLETLLRNFAGKDG--QPPASKASVEAMPS---IKVGES-----------EEEALGGECVVCLEEYEVGEVARE-MPC 142 (232)
Q Consensus 80 ~~~le~ll~~~~~~~g--~~~as~~~i~~l~~---~~~~~~-----------~~~~~~~~C~IC~e~~~~~~~~~~-lpC 142 (232)
..+.+.+|..|..... ..+.....|..|.. +++... ........|||....|......+. .+|
T Consensus 56 LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~c 135 (260)
T PF04641_consen 56 LYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPC 135 (260)
T ss_pred eEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEcCC
Confidence 3467778877764432 23333334444443 233221 112345689999999965444444 579
Q ss_pred CCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 143 KHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 143 ~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
||+|...+|...- ....||+|-.++...
T Consensus 136 G~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 136 GCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCEeeHHHHHhhc-ccccccccCCccccC
Confidence 9999999998873 356799999887543
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.011 Score=51.30 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCCCcccccccccCceeeee-CCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 121 GGECVVCLEEYEVGEVAREM-PCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
...|+||.+.+.+...+..| ||||+|+.+|+.+.+.....||+|-.++...+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 35899999999887655555 69999999999999998999999988775433
No 76
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.63 E-value=0.0068 Score=53.95 Aligned_cols=44 Identities=27% Similarity=0.558 Sum_probs=35.3
Q ss_pred CCCcccccccccCceeeeeC-CCCcccHHHHHHHH-hcCCCCCCcC-ccc
Q 026833 122 GECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWL-GINGSCPVCR-YKM 168 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lp-C~H~fh~~Ci~~wl-~~~~tCP~CR-~~~ 168 (232)
..|+.|-..+..+.+ +| |+|.||.+||..-| .....||.|. +.+
T Consensus 275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdv 321 (427)
T COG5222 275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDV 321 (427)
T ss_pred ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccc
Confidence 789999998877644 45 99999999998776 5677999994 444
No 77
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0035 Score=55.54 Aligned_cols=41 Identities=22% Similarity=0.643 Sum_probs=31.7
Q ss_pred CCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCccc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
...|.||++. +.....|+|||. -|.+|-.. -..||+||+.+
T Consensus 300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 5689999987 555778999996 57777644 33899999866
No 78
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.55 E-value=0.0088 Score=38.20 Aligned_cols=41 Identities=27% Similarity=0.767 Sum_probs=23.9
Q ss_pred CcccccccccCceeeeeCCCCcccHHHHHHHHhcCC--CCCCc
Q 026833 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING--SCPVC 164 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~--tCP~C 164 (232)
|.+|.+....+.......|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877665533335888999999999996655 79988
No 79
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.0096 Score=49.33 Aligned_cols=51 Identities=27% Similarity=0.708 Sum_probs=35.3
Q ss_pred CCCCcccccccccCc----eeeeeCCCCcccHHHHHHHHhcC-----------CCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGE----VAREMPCKHKFHANCIEKWLGIN-----------GSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~----~~~~lpC~H~fh~~Ci~~wl~~~-----------~tCP~CR~~~~~~ 171 (232)
...|-||+.+--.+. ..--..|+..||.-|+..||+.- +.||+|..++..+
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 456888877643332 22235699999999999999521 2599999887543
No 80
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.0095 Score=54.18 Aligned_cols=45 Identities=36% Similarity=0.612 Sum_probs=31.9
Q ss_pred hhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 118 EALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 118 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
....+.|.||++.... ...+||||.-| |..--. ....||+||+.+
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI 346 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSK-HLPQCPVCRQRI 346 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHHh-hCCCCchhHHHH
Confidence 3445789999999664 56699999866 654322 234599999765
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.06 E-value=0.0081 Score=51.86 Aligned_cols=44 Identities=20% Similarity=0.548 Sum_probs=32.6
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
.|..|...-. .....++.|.|+||..|...-. ...||+|++.+.
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceee
Confidence 4777776544 5666778899999999975532 338999998763
No 82
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.91 E-value=0.018 Score=52.27 Aligned_cols=49 Identities=22% Similarity=0.601 Sum_probs=37.4
Q ss_pred hhhcCCCCcccccccccCceeeeeCCCCcccHHHHHH--HHhcCCCCCCcCccc
Q 026833 117 EEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEK--WLGINGSCPVCRYKM 168 (232)
Q Consensus 117 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~--wl~~~~tCP~CR~~~ 168 (232)
.++++..|.||.+.+.- ..++||+|..|--|-.+ .|...+.||+||...
T Consensus 57 tDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34456789999988542 35599999999999755 356788999999754
No 83
>PHA03096 p28-like protein; Provisional
Probab=94.90 E-value=0.014 Score=52.09 Aligned_cols=45 Identities=27% Similarity=0.528 Sum_probs=31.6
Q ss_pred CCCcccccccccC----ceeeeeC-CCCcccHHHHHHHHhcC---CCCCCcCc
Q 026833 122 GECVVCLEEYEVG----EVAREMP-CKHKFHANCIEKWLGIN---GSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~----~~~~~lp-C~H~fh~~Ci~~wl~~~---~tCP~CR~ 166 (232)
..|.||++..... .....|+ |.|.||..|+..|.... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999986532 2334566 99999999999998432 34555543
No 84
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.88 E-value=0.024 Score=46.09 Aligned_cols=51 Identities=24% Similarity=0.510 Sum_probs=34.1
Q ss_pred CCCCcccccccccCceeeeeC------------CC-CcccHHHHHHHHhc------------------------------
Q 026833 121 GGECVVCLEEYEVGEVAREMP------------CK-HKFHANCIEKWLGI------------------------------ 157 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp------------C~-H~fh~~Ci~~wl~~------------------------------ 157 (232)
+..|+|||+.-.+ .+.|- |+ -.-|..|++++.+.
T Consensus 2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 5789999998433 23333 43 23578899988531
Q ss_pred -CCCCCCcCcccCCCccc
Q 026833 158 -NGSCPVCRYKMPVEEEE 174 (232)
Q Consensus 158 -~~tCP~CR~~~~~~~~~ 174 (232)
...||+||..|......
T Consensus 79 ~~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVV 96 (162)
T ss_pred ccccCccccCceeceEEc
Confidence 12599999998776654
No 85
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.70 E-value=0.014 Score=58.27 Aligned_cols=47 Identities=34% Similarity=0.738 Sum_probs=35.1
Q ss_pred cCCCCcccccccccCce-eeeeCCCCcccHHHHHHHHhcCC-------CCCCcCc
Q 026833 120 LGGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKWLGING-------SCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~wl~~~~-------tCP~CR~ 166 (232)
...+|.||++.+..... +..-.|-|+||..||..|-.... .||.|..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 35699999999875542 23344889999999999985321 5999974
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.022 Score=50.63 Aligned_cols=47 Identities=36% Similarity=0.806 Sum_probs=38.0
Q ss_pred CCCcccccccccCc---eeeeeCCCCcccHHHHHHHHhc-CCCCCCcCccc
Q 026833 122 GECVVCLEEYEVGE---VAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKM 168 (232)
Q Consensus 122 ~~C~IC~e~~~~~~---~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~ 168 (232)
..|-||-++|.... ..+.|.|||.||..|+.+.+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 58999999997663 3466789999999999887744 34799999986
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.50 E-value=0.11 Score=47.69 Aligned_cols=31 Identities=29% Similarity=0.876 Sum_probs=23.6
Q ss_pred CCCcccHHHHHHHHhcC-------------CCCCCcCcccCCCc
Q 026833 142 CKHKFHANCIEKWLGIN-------------GSCPVCRYKMPVEE 172 (232)
Q Consensus 142 C~H~fh~~Ci~~wl~~~-------------~tCP~CR~~~~~~~ 172 (232)
|...+|..|+-+|+..+ ..||.||+.+...+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 55677999999998432 26999999887544
No 88
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.03 Score=50.42 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=38.5
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
....|+||+....++.. ..--|-+||+.|+...+...+.||+=..+..
T Consensus 299 ~~~~CpvClk~r~Nptv--l~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTV--LEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCce--EEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 35689999999776643 2235899999999999999999999876653
No 89
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.30 E-value=0.02 Score=37.26 Aligned_cols=44 Identities=25% Similarity=0.656 Sum_probs=25.3
Q ss_pred CCcccccccccCceeeeeCCC-CcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 123 ECVVCLEEYEVGEVAREMPCK-HKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
.|.-|+-.... .+.|. |..|..|+..+|.....||+|.+++|..
T Consensus 4 nCKsCWf~~k~-----Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANKG-----LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--SS-----EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCCC-----eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 45556544221 24575 9999999999999999999999998754
No 90
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.0046 Score=56.74 Aligned_cols=52 Identities=25% Similarity=0.629 Sum_probs=43.8
Q ss_pred CCCCcccccccccC-ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 121 GGECVVCLEEYEVG-EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~~~~~-~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
...|+||.+.+... +++..+-|+|.+|..||.+||.....||.|+..++.-.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 35799999998766 46666789999999999999988889999998885543
No 91
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=0.034 Score=55.65 Aligned_cols=41 Identities=24% Similarity=0.721 Sum_probs=33.5
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYK 167 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~ 167 (232)
..|.+|--.++.| .+...|+|.||..|+. .....||.|+..
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 4899999988776 4557799999999997 445689999873
No 92
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.63 E-value=0.067 Score=35.91 Aligned_cols=45 Identities=27% Similarity=0.598 Sum_probs=31.4
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
..|..|... +.+-.++||+|..+..|..-+ +-+-||.|..++...
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 456666655 233455899999999997553 356799998877543
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=0.054 Score=48.56 Aligned_cols=42 Identities=29% Similarity=0.646 Sum_probs=28.3
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
.|.-|--.+. .--+.+||+|+||.+|-.. ...+.||.|-..|
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 5666644332 2235689999999999644 4467899996544
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.10 E-value=0.065 Score=53.22 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=35.8
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC--CCCCCcCcccCC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN--GSCPVCRYKMPV 170 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~--~tCP~CR~~~~~ 170 (232)
..|.||++ .+.....+|+|.||..|+..-+... ..||+||..+..
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 3456678899999999999988543 369999986643
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.70 E-value=0.18 Score=33.78 Aligned_cols=39 Identities=33% Similarity=0.784 Sum_probs=30.1
Q ss_pred CCCCcccccccccCceeeeeC-CCCcccHHHHHHHHhcCCCCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGINGSCPV 163 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~tCP~ 163 (232)
...|.+|-+.|..+..+++-| |+-.+|+.|... ...|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 568999999998666666666 999999999644 455655
No 96
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=0.18 Score=44.76 Aligned_cols=46 Identities=20% Similarity=0.612 Sum_probs=33.8
Q ss_pred CCcccccc-cccCc-eeeeeCCCCcccHHHHHHHHhc-CCCCCCcCccc
Q 026833 123 ECVVCLEE-YEVGE-VAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKM 168 (232)
Q Consensus 123 ~C~IC~e~-~~~~~-~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~ 168 (232)
.|++|... |-.+. .+.+-+|+|..|..|+...+.. ...||.|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 59999887 33333 3333479999999999998754 56899997655
No 97
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.14 E-value=0.11 Score=44.98 Aligned_cols=47 Identities=23% Similarity=0.607 Sum_probs=34.7
Q ss_pred cCCCCcccccc-cccCc-eeeeeC-CCCcccHHHHHHHHhc-CCCCC--CcCc
Q 026833 120 LGGECVVCLEE-YEVGE-VAREMP-CKHKFHANCIEKWLGI-NGSCP--VCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~-~~~~~-~~~~lp-C~H~fh~~Ci~~wl~~-~~tCP--~CR~ 166 (232)
.+..||||..+ |-.+. ++.+-| |-|.+|..|+.+.+.. ...|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 45689999987 44443 334446 9999999999998854 45799 7854
No 98
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.14 Score=43.70 Aligned_cols=38 Identities=32% Similarity=0.704 Sum_probs=28.3
Q ss_pred CcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCccc
Q 026833 124 CVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
|-+|.+. ...+..+||.|. +|..|-.. -.+||+|+...
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChh
Confidence 8888776 556888999976 77777533 45699998654
No 99
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.084 Score=51.52 Aligned_cols=42 Identities=26% Similarity=0.641 Sum_probs=32.0
Q ss_pred CCCcccccccccCc-eeeeeCCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 122 GECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
..|.||+..|.... ..+.+-|||+.|..|+..-. +.+|| |++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 57999988876544 33456799999999998755 67899 654
No 100
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.88 E-value=0.17 Score=45.47 Aligned_cols=42 Identities=24% Similarity=0.612 Sum_probs=33.3
Q ss_pred CCCCcccccccccCceeeeeCC--CCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPC--KHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC--~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
-.+||||.+.+..+. +.| ||..|..|-. +....||.||.++.
T Consensus 48 lleCPvC~~~l~~Pi----~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPI----FQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCcccc----eecCCCcEehhhhhh---hhcccCCccccccc
Confidence 468999999988652 446 6899998865 34678999999887
No 101
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.09 E-value=0.15 Score=51.33 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=28.5
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHH
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWL 155 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl 155 (232)
.++.|.+|...+.. ....+.||||.||+.||.+-.
T Consensus 816 p~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 46799999998764 345668999999999998765
No 102
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.72 E-value=0.25 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.747 Sum_probs=22.3
Q ss_pred eeCCCCcccHHHHHHHHhcCCCCCC
Q 026833 139 EMPCKHKFHANCIEKWLGINGSCPV 163 (232)
Q Consensus 139 ~lpC~H~fh~~Ci~~wl~~~~tCP~ 163 (232)
...|+|+.|..|...|+.....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 4569999999999999999989984
No 103
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=0.39 Score=44.39 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC---CCCCCcCc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN---GSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~---~tCP~CR~ 166 (232)
..|||=.+.-.+......|.|||+...+-+.+..+.. ..||+|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4799988887766777789999999999999977543 36999954
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.20 E-value=0.21 Score=44.53 Aligned_cols=32 Identities=19% Similarity=0.615 Sum_probs=24.5
Q ss_pred CCCcccHHHHHHHHhc-------------CCCCCCcCcccCCCcc
Q 026833 142 CKHKFHANCIEKWLGI-------------NGSCPVCRYKMPVEEE 173 (232)
Q Consensus 142 C~H~fh~~Ci~~wl~~-------------~~tCP~CR~~~~~~~~ 173 (232)
|...+|.+|+-+|+.. +.+||.||+.+...+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5677889999999742 3379999998876553
No 105
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.16 E-value=0.16 Score=53.04 Aligned_cols=44 Identities=27% Similarity=0.619 Sum_probs=36.8
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
...|.||++.+..-. .+..|+|.+|..|...|+..+..||.|+.
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 358999999987432 23569999999999999999999999974
No 106
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.85 E-value=0.18 Score=44.14 Aligned_cols=49 Identities=29% Similarity=0.760 Sum_probs=33.3
Q ss_pred cCCCCcccccccccCcee-eeeCCC-----CcccHHHHHHHHhcCC--------CCCCcCccc
Q 026833 120 LGGECVVCLEEYEVGEVA-REMPCK-----HKFHANCIEKWLGING--------SCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~-~~lpC~-----H~fh~~Ci~~wl~~~~--------tCP~CR~~~ 168 (232)
.+..|-||+..=++.... -+-||. |..|..|+..|+..+. +||-|+.+.
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 456899999874433221 224553 7899999999994322 599998643
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.99 E-value=0.36 Score=48.44 Aligned_cols=54 Identities=22% Similarity=0.587 Sum_probs=37.8
Q ss_pred cCCCCcccccccccCceeeeeCCC-----CcccHHHHHHHHhcC--CCCCCcCcccCCCccc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCK-----HKFHANCIEKWLGIN--GSCPVCRYKMPVEEEE 174 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~-----H~fh~~Ci~~wl~~~--~tCP~CR~~~~~~~~~ 174 (232)
++..|-||..+=..+.. ..=||+ ...|++|+..|+.-. ..|-+|.+++.-++.-
T Consensus 11 d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 11 DKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred cchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 35799999988443333 223565 458999999999643 4699999877555443
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.21 E-value=0.31 Score=45.34 Aligned_cols=37 Identities=22% Similarity=0.665 Sum_probs=27.0
Q ss_pred CCCCcccccccccC-ceeeeeCCCCcccHHHHHHHHhc
Q 026833 121 GGECVVCLEEYEVG-EVAREMPCKHKFHANCIEKWLGI 157 (232)
Q Consensus 121 ~~~C~IC~e~~~~~-~~~~~lpC~H~fh~~Ci~~wl~~ 157 (232)
..+|.||+..+... .......|+|.||..|+.+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56899999443333 33334669999999999998853
No 109
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=84.48 E-value=0.53 Score=44.28 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=28.5
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG 156 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~ 156 (232)
++..|+||...|.++ ++|||+|..|..|...-+.
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhcc
Confidence 468999999999875 4599999999999886653
No 110
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.41 E-value=0.85 Score=36.17 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=35.2
Q ss_pred CCCCcccccccccCceeeeeC---CCCcccHHHHHHHHh---cCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMP---CKHKFHANCIEKWLG---INGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp---C~H~fh~~Ci~~wl~---~~~tCP~CR~~~~~~ 171 (232)
--+|.||.|...+..-+ -| ||-..|..|....++ ....||+|+..+...
T Consensus 80 lYeCnIC~etS~ee~FL--KPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFL--KPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcC--CcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 46899999986544321 12 999999999766543 456899999877543
No 111
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.94 E-value=0.5 Score=41.84 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=35.2
Q ss_pred CCCCcccccccccCce-eeeeCCC-----CcccHHHHHHHHh--cCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCK-----HKFHANCIEKWLG--INGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~-----H~fh~~Ci~~wl~--~~~tCP~CR~~~~ 169 (232)
+..|-||......... ....||. ...|..|+..|+. ...+|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999997653321 3446664 5679999999996 4567999987543
No 112
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=83.49 E-value=1.2 Score=29.20 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=20.9
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhc---C--CCCCCcCcc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI---N--GSCPVCRYK 167 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~--~tCP~CR~~ 167 (232)
..|+|....+..+ ++...|.|.-|.+ +..||.. . -.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5799998888765 5567799985433 3455532 2 259999763
No 113
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=82.28 E-value=0.39 Score=47.48 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=37.4
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC---CCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN---GSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~---~tCP~CR~~~~~~ 171 (232)
..+|+||+..+..+ ..+.|.|.|+..|+..-+... ..||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 57999999998876 347899999999997766433 4699998665443
No 114
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.99 E-value=0.82 Score=44.34 Aligned_cols=48 Identities=35% Similarity=0.843 Sum_probs=38.1
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCcc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEEE 173 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~~ 173 (232)
+....|.||+..+ ..+..+|. |..|+.+|+..+..||+|+..+...+.
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 3457899999998 23446777 899999999999999999887755443
No 115
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=80.40 E-value=0.98 Score=38.57 Aligned_cols=46 Identities=26% Similarity=0.571 Sum_probs=36.6
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
..|.+|......+ ++.-.|+-.||..|+...++....||.|..-++
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 5899999987655 333557888999999999999999999965443
No 116
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=79.82 E-value=0.66 Score=45.27 Aligned_cols=42 Identities=29% Similarity=0.744 Sum_probs=26.5
Q ss_pred CCCCcccccc-----cccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 121 GGECVVCLEE-----YEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 121 ~~~C~IC~e~-----~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
...|.||... |......+..-|+++||..|+.. ....||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 4567777433 32223344566999999999754 233499993
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.11 E-value=3.3 Score=36.37 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=53.6
Q ss_pred cHHHHHHHHhCCCCCCCCCHHHHHcCCcee---ccCc-----h-------hhhcCCCCcccccccccCcee-eeeCCCCc
Q 026833 82 SLETLLRNFAGKDGQPPASKASVEAMPSIK---VGES-----E-------EEALGGECVVCLEEYEVGEVA-REMPCKHK 145 (232)
Q Consensus 82 ~le~ll~~~~~~~g~~~as~~~i~~l~~~~---~~~~-----~-------~~~~~~~C~IC~e~~~~~~~~-~~lpC~H~ 145 (232)
+=+.+|..|.... .-|.+...|..+..+. +... + .......|+|---+|...... ...+|||+
T Consensus 58 NKe~vi~~LL~Ks-~~pksaShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV 136 (293)
T KOG3113|consen 58 NKESVIEFLLDKS-SLPKSASHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCV 136 (293)
T ss_pred cHHHHHHHHHhcc-cCCcchhhhcchhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEecccee
Confidence 4455565555443 5567777777766542 1111 0 001224688877776654443 34569999
Q ss_pred ccHHHHHHHHhcCCCCCCcCcccCCCcc
Q 026833 146 FHANCIEKWLGINGSCPVCRYKMPVEEE 173 (232)
Q Consensus 146 fh~~Ci~~wl~~~~tCP~CR~~~~~~~~ 173 (232)
|-..-+.+.- ..+|++|...+...+.
T Consensus 137 ~SerAlKeik--as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 137 FSERALKEIK--ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ccHHHHHHhh--hccccccCCcccccCe
Confidence 9988877643 6789999887755543
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.67 E-value=1.2 Score=41.42 Aligned_cols=44 Identities=30% Similarity=0.534 Sum_probs=32.5
Q ss_pred cCCCCcccccccccCc---eeeeeCCCCcccHHHHHHHHhcCCCCCCc
Q 026833 120 LGGECVVCLEEYEVGE---VAREMPCKHKFHANCIEKWLGINGSCPVC 164 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~---~~~~lpC~H~fh~~Ci~~wl~~~~tCP~C 164 (232)
.-..|++|.-.+.... .+... |+|.||+.|...|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3568999887765443 33333 99999999999998877777655
No 119
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=76.57 E-value=1.9 Score=36.48 Aligned_cols=40 Identities=33% Similarity=0.840 Sum_probs=28.1
Q ss_pred CCCCcccccc-----cccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 121 GGECVVCLEE-----YEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 121 ~~~C~IC~e~-----~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
+..|-||-.. |+.....+.-.|+.+||..|+. ...||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 5688888753 3433344445599999999975 26799994
No 120
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.39 E-value=1.6 Score=43.88 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=36.7
Q ss_pred hcCCCCcccccccccCc-eeeeeC---CCCcccHHHHHHHHhc------CCCCCCcCcccCC
Q 026833 119 ALGGECVVCLEEYEVGE-VAREMP---CKHKFHANCIEKWLGI------NGSCPVCRYKMPV 170 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~-~~~~lp---C~H~fh~~Ci~~wl~~------~~tCP~CR~~~~~ 170 (232)
.....|.||..++..+. ....+| |+|.||..||..|+.+ +-.|+.|..-|..
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 34568999988887632 122344 9999999999999843 2358888776543
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.88 E-value=3.5 Score=41.34 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=29.3
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPV 163 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~ 163 (232)
..|.+|-..+. +..+-.--|+|..|..|+..|+....-||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 46788866643 222222339999999999999988877766
No 122
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.45 E-value=2.3 Score=40.17 Aligned_cols=35 Identities=29% Similarity=0.694 Sum_probs=29.2
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI 157 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~ 157 (232)
...|-||.+.+.. .+..+.|+|.||..|+...+..
T Consensus 70 ~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 70 DVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred cccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 5789999999865 4556789999999999998853
No 123
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=69.78 E-value=3.3 Score=27.39 Aligned_cols=42 Identities=26% Similarity=0.528 Sum_probs=20.4
Q ss_pred CcccccccccCc-------eeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 124 CVVCLEEYEVGE-------VAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 124 C~IC~e~~~~~~-------~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
|.-|+..|.... ..+--.|++.||.+|=.-.=+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 556666666541 222234999999999533223445799883
No 124
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=69.28 E-value=8.9 Score=25.87 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=33.2
Q ss_pred CCCCcccccccccCc-eeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
...|-.|-.++.... ...+-.=...||..|....| +..||.|...+..
T Consensus 5 rpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 356778877776544 22222223679999999987 7899999887753
No 125
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.49 E-value=4.8 Score=36.56 Aligned_cols=48 Identities=23% Similarity=0.582 Sum_probs=35.5
Q ss_pred CCCcccccccccCc-eeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 122 GECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 122 ~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
..|+||.+...... ...-.||++..|..|+..-...+.+||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 68999999874332 2222348888888898888888899999995543
No 126
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=63.12 E-value=5.2 Score=36.43 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=30.6
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
.|..|..........+.-.|++.||.+|-.-.-..-..||.|..
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 48888666665555555669999999996443344457999963
No 128
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.47 E-value=4.2 Score=25.97 Aligned_cols=42 Identities=26% Similarity=0.600 Sum_probs=27.8
Q ss_pred CcccccccccCceeeeeCCCCcccHHHHHHHHh------cCCCCCCcC
Q 026833 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG------INGSCPVCR 165 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~------~~~tCP~CR 165 (232)
|.||.........+.--.|+..||..|+..-.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 788988544444444445999999999865432 133687774
No 129
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=59.19 E-value=6.9 Score=35.97 Aligned_cols=47 Identities=32% Similarity=0.647 Sum_probs=27.1
Q ss_pred cCCCCcccccccccCceeeeeCC---CCcc--------cHHHHHHHH-----hcCCCCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPC---KHKF--------HANCIEKWL-----GINGSCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC---~H~f--------h~~Ci~~wl-----~~~~tCP~CR~~ 167 (232)
.+..|++|-+... +.+...|.| +-.| |+.|+..-- ..++.||.||+.
T Consensus 14 l~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 14 LGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred cccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 4678999999865 455555554 3333 222332210 124479999974
No 130
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=5.4 Score=35.66 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=27.9
Q ss_pred CCCCcccccccccCceeeeeC--CCCcccHHHHHHHHhcCC
Q 026833 121 GGECVVCLEEYEVGEVAREMP--CKHKFHANCIEKWLGING 159 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp--C~H~fh~~Ci~~wl~~~~ 159 (232)
-..|.+|.|.+++..- +..| =.|.||..|-+.-++.+.
T Consensus 268 pLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhccCce-eecCCCcccceecccCHHHHHhhc
Confidence 3689999999886543 2222 369999999999987543
No 131
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=55.99 E-value=5.6 Score=39.64 Aligned_cols=53 Identities=25% Similarity=0.575 Sum_probs=32.9
Q ss_pred hhhhcCCCCcccccccccCc-----eeee--eCCCCcccHHHHHHH--H--------hcCCCCCCcCccc
Q 026833 116 EEEALGGECVVCLEEYEVGE-----VARE--MPCKHKFHANCIEKW--L--------GINGSCPVCRYKM 168 (232)
Q Consensus 116 ~~~~~~~~C~IC~e~~~~~~-----~~~~--lpC~H~fh~~Ci~~w--l--------~~~~tCP~CR~~~ 168 (232)
.++.....|.||-|.=...+ .+.. -.|+..||-.|-... | ..-+.|-+|++.+
T Consensus 112 P~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 112 PHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred chhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 34455679999999832221 2111 237888999997653 1 1234799998754
No 132
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=54.05 E-value=11 Score=34.36 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=32.5
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC---CCCCCcCc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN---GSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~---~tCP~CR~ 166 (232)
..||+-.+.-........|.|||+.-.+-+...-+.. ..||+|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4788877766555566778999999988887754322 35999943
No 133
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=53.96 E-value=2.4 Score=37.72 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCCCcccccccccCceeeee--CCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVAREM--PCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
...||||-..-........- --.+.+|..|-..|-..+..||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 46999998773221110000 01356778888899888889999954
No 134
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=53.65 E-value=8 Score=26.94 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=8.7
Q ss_pred cccHHHHHHHHh
Q 026833 145 KFHANCIEKWLG 156 (232)
Q Consensus 145 ~fh~~Ci~~wl~ 156 (232)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 135
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.37 E-value=5.5 Score=40.18 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=31.2
Q ss_pred CCCCcccccccccC----ceeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 121 GGECVVCLEEYEVG----EVAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 121 ~~~C~IC~e~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
+..|.-|++..... ..+.++.|+|.||..|+..-..++. |-.|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 45899999885422 4567789999999999866554443 66663
No 136
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=52.76 E-value=13 Score=28.22 Aligned_cols=46 Identities=28% Similarity=0.621 Sum_probs=29.0
Q ss_pred CCCCcccccccccCcee-----eeeCC---CCcccHHHHHHHHhc---------CCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVA-----REMPC---KHKFHANCIEKWLGI---------NGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~-----~~lpC---~H~fh~~Ci~~wl~~---------~~tCP~CR~ 166 (232)
...|..|...-...... ....| .-.||..||..++.. .-.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 46788887754322110 11335 677999999888742 126999986
No 137
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=51.00 E-value=8.3 Score=34.14 Aligned_cols=47 Identities=28% Similarity=0.567 Sum_probs=32.0
Q ss_pred CCCcccccccccCceeee----eCCCCcccHHHHHHHHh---------cCCCCCCcCccc
Q 026833 122 GECVVCLEEYEVGEVARE----MPCKHKFHANCIEKWLG---------INGSCPVCRYKM 168 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~----lpC~H~fh~~Ci~~wl~---------~~~tCP~CR~~~ 168 (232)
.+|-+|...+...+..+. .-|.-.+|..|+-..+. ....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 489999999854332221 12888999999988442 123699998743
No 138
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.65 E-value=16 Score=28.15 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=32.5
Q ss_pred CCCcccccccccCc-----------eeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 122 GECVVCLEEYEVGE-----------VAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 122 ~~C~IC~e~~~~~~-----------~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
..|.-|+..|.... +.....|++.||.+|=.-+-+.-..||.|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886431 122345999999999877767667899995
No 139
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.39 E-value=2 Score=30.29 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=20.7
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
..||.|..++.... ++.+|..|-.. +.....||-|..+|
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 57999999865432 55566666544 34466799998876
No 140
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=47.76 E-value=8.8 Score=26.18 Aligned_cols=36 Identities=11% Similarity=0.389 Sum_probs=17.7
Q ss_pred cCCCCcccccccccCce-eeeeCCCCcccHHHHHHHH
Q 026833 120 LGGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKWL 155 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~wl 155 (232)
+...|.+|...|..-.. -.--.||++||..|....+
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 35789999999965432 2223499999998875544
No 141
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=47.70 E-value=16 Score=21.23 Aligned_cols=37 Identities=22% Similarity=0.565 Sum_probs=22.7
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
.|..|...+....... ..=+..||..|+ .|..|+..|
T Consensus 1 ~C~~C~~~i~~~~~~~-~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVL-RALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEE-EeCCccccccCC--------CCcccCCcC
Confidence 3777888776542221 223567887764 677787655
No 142
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.74 E-value=26 Score=24.94 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=31.7
Q ss_pred CCCcccccccccCceeeeeCC--CCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 122 GECVVCLEEYEVGEVAREMPC--KHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC--~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
..|--|-.++...... .+-| .+.||..|....| +..||.|...+....
T Consensus 6 PnCECCDrDLpp~s~d-A~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP 55 (84)
T COG3813 6 PNCECCDRDLPPDSTD-ARICTFECTFCADCAENRL--HGLCPNCGGELVARP 55 (84)
T ss_pred CCCcccCCCCCCCCCc-eeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCc
Confidence 4566666665433221 1224 4889999998766 789999988775443
No 143
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.80 E-value=4.9 Score=32.02 Aligned_cols=47 Identities=23% Similarity=0.472 Sum_probs=24.9
Q ss_pred cCCCCcccccc-cccCceeeeeCCCCcccHHHHHHHH-hcCC---CCCCcCc
Q 026833 120 LGGECVVCLEE-YEVGEVAREMPCKHKFHANCIEKWL-GING---SCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~-~~~~~~~~~lpC~H~fh~~Ci~~wl-~~~~---tCP~CR~ 166 (232)
.+..|.||... |.++..-...-|.-.||..|--+.- +.++ .|-+|+.
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 46899999876 5544222222244445555543322 2222 4777865
No 144
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=44.08 E-value=24 Score=32.17 Aligned_cols=51 Identities=24% Similarity=0.535 Sum_probs=33.0
Q ss_pred cCCCCcccccccc---------------cCc-eeeeeCCCCcccHHHHHHHHhc---------CCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYE---------------VGE-VAREMPCKHKFHANCIEKWLGI---------NGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~---------------~~~-~~~~lpC~H~fh~~Ci~~wl~~---------~~tCP~CR~~~~~ 170 (232)
.+.+|++|+..=. .+. .-..-||||+.-.+-..-|-+. +..||.|-..+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3579999998611 010 1123579998777777778642 3369999877644
No 145
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=43.30 E-value=21 Score=26.65 Aligned_cols=31 Identities=26% Similarity=0.595 Sum_probs=22.2
Q ss_pred CCCCcccccccccCceeeee--CCCCcccHHHHHH
Q 026833 121 GGECVVCLEEYEVGEVAREM--PCKHKFHANCIEK 153 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~ 153 (232)
...|.||.... +..+.-. .|...||..|...
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 57899999983 3333333 3888999999855
No 146
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=43.06 E-value=24 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.574 Sum_probs=27.3
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
..|+-|...+.--+. .| |..|+..++.|..|+++++.
T Consensus 34 S~C~~C~~~L~~~~l---IP---------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDL---IP---------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCccccc---ch---------HHHHHHhCCCCcccCCCCCh
Confidence 578888777654333 33 56788899999999998864
No 147
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.93 E-value=17 Score=31.91 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHh
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG 156 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~ 156 (232)
+.|..|+..+..+.. .|=||+|+++||.+++-
T Consensus 44 dcCsLtLqPc~dPvi---t~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVI---TPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCcc---CCCCeeeeHHHHHHHHH
Confidence 589999999877643 78899999999999873
No 148
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.68 E-value=7.9 Score=34.87 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=37.9
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
....|.||+..+..+.. .-.|.|.|+..|...|.....-||.|+...
T Consensus 104 ~~~~~~~~~g~l~vpt~--~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTR--IQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEeccc--ccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 35689999999876643 234999999999999999888999998643
No 149
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.39 E-value=8.8 Score=35.83 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=0.0
Q ss_pred cCCCCcccccccccC-----------ceeeeeCCCCcccHHHHHHHHh------cCCCCCCcCccc
Q 026833 120 LGGECVVCLEEYEVG-----------EVAREMPCKHKFHANCIEKWLG------INGSCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~-----------~~~~~lpC~H~fh~~Ci~~wl~------~~~tCP~CR~~~ 168 (232)
....|++=+..+.-+ ....-+.|||++... .|-. ...+||+||..-
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 345677766554322 123447799987654 4642 245799999743
No 150
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=40.43 E-value=17 Score=23.43 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=26.1
Q ss_pred CcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 124 CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 124 C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
|..|...+.....+ +..-+..||..|+ +|-.|+..|....
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 66777777644332 2246778887775 7888888775543
No 151
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=40.31 E-value=62 Score=32.24 Aligned_cols=95 Identities=20% Similarity=0.390 Sum_probs=45.7
Q ss_pred CCcceEecCcccHHHHHHHHhCCCCCCCCCHHHHHcCCceeccCchh-------hhcCCCCcccccccccCceeeeeCCC
Q 026833 71 NQGMVVIEGTSSLETLLRNFAGKDGQPPASKASVEAMPSIKVGESEE-------EALGGECVVCLEEYEVGEVAREMPCK 143 (232)
Q Consensus 71 ~~~~~~~~~~~~le~ll~~~~~~~g~~~as~~~i~~l~~~~~~~~~~-------~~~~~~C~IC~e~~~~~~~~~~lpC~ 143 (232)
...++++.+. +-+.||.++........ ....-.++-..++....+ ...-..|+|+...+..+ ++...|+
T Consensus 251 sl~~~~v~~~-t~~~llq~~~~~~~~~~-~~~~s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P--~r~~~Ck 326 (636)
T KOG2169|consen 251 SLSVYFVEGL-TSKDLLQRLKQNGKINR-NLSQSDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLP--ARGHTCK 326 (636)
T ss_pred ceEEEEeccc-CHHHHHHHHhccCCccC-chhHhHHHhhcccccCCcccceeccceeEecCCcccceeecC--Ccccccc
Confidence 3444444443 55677777764443322 112222222222222111 11235799988876644 2234566
Q ss_pred CcccHHHHHH-HH-hc---CC--CCCCcCcccCCCc
Q 026833 144 HKFHANCIEK-WL-GI---NG--SCPVCRYKMPVEE 172 (232)
Q Consensus 144 H~fh~~Ci~~-wl-~~---~~--tCP~CR~~~~~~~ 172 (232)
|. .|.+. |+ .. .. .||+|.+....+.
T Consensus 327 Hl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~ 359 (636)
T KOG2169|consen 327 HL---QCFDALSYLQMNEQKPTWRCPVCQKAAPFEG 359 (636)
T ss_pred cc---eecchhhhHHhccCCCeeeCccCCccccccc
Confidence 64 55543 33 21 12 5999987664443
No 152
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=39.87 E-value=9.9 Score=41.15 Aligned_cols=50 Identities=26% Similarity=0.481 Sum_probs=37.1
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC----CCCCcCccc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING----SCPVCRYKM 168 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~----tCP~CR~~~ 168 (232)
.....|.||.........+...-|...||..|+++-+.... .||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34578999999977644433344889999999999885432 699998654
No 153
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=39.63 E-value=14 Score=26.40 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=23.1
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHH
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEK 153 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~ 153 (232)
....|.+|............-.|...||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 3578999997733222223344999999999754
No 154
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=37.65 E-value=34 Score=26.40 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=19.7
Q ss_pred HHHhcCCCCCCcCcccCCCcccccchhh
Q 026833 153 KWLGINGSCPVCRYKMPVEEEESGNKRD 180 (232)
Q Consensus 153 ~wl~~~~tCP~CR~~~~~~~~~~~~~~~ 180 (232)
+.+.+...|+.|+.++..+....+..=+
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~legkef~ 107 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSLEGKEFD 107 (114)
T ss_pred hhhchhhccCcCCCcCccCchhhcchhh
Confidence 4566667899999999877665444333
No 155
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.95 E-value=35 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHH
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWL 155 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl 155 (232)
+-.|.||-..+..+.+....+ .-..|++|+..=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHH
Confidence 357999999999999877777 6668999997754
No 156
>PLN02248 cellulose synthase-like protein
Probab=34.32 E-value=33 Score=36.26 Aligned_cols=53 Identities=23% Similarity=0.497 Sum_probs=35.2
Q ss_pred CCCCcc--cccccc-cCceeeeeC--CCCcccHHHHHHHHhcCCCCCCcCcccCCCcc
Q 026833 121 GGECVV--CLEEYE-VGEVAREMP--CKHKFHANCIEKWLGINGSCPVCRYKMPVEEE 173 (232)
Q Consensus 121 ~~~C~I--C~e~~~-~~~~~~~lp--C~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~~ 173 (232)
+..|.+ |-.... .......+| |+...|++|...-++....||-|+.+....+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 124 GSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVTDL 181 (1135)
T ss_pred CCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcCCCCCCCccccccccc
Confidence 345664 444322 222233466 77889999999999888899999987744443
No 157
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.99 E-value=20 Score=21.65 Aligned_cols=14 Identities=29% Similarity=0.745 Sum_probs=9.5
Q ss_pred CCCcccccccccCc
Q 026833 122 GECVVCLEEYEVGE 135 (232)
Q Consensus 122 ~~C~IC~e~~~~~~ 135 (232)
..|+-|...|..++
T Consensus 3 i~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 3 ITCPNCQAKYEIDD 16 (36)
T ss_pred EECCCCCCEEeCCH
Confidence 46888888776543
No 158
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=33.12 E-value=36 Score=25.72 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=26.4
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHh
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG 156 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~ 156 (232)
-.|.||-..+..++....++= -..|+.|+..-..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 369999999988887665544 6689999987653
No 159
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=32.62 E-value=18 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.510 Sum_probs=23.4
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHH
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKW 154 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~w 154 (232)
.+|+||+-+|-.... ...-|....|..|+.++
T Consensus 75 ~ecpicflyyps~~n-~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 75 TECPICFLYYPSAKN-LVRCCSETICGECFAPF 106 (482)
T ss_pred ccCceeeeecccccc-hhhhhccchhhhheecc
Confidence 689999999864322 22338888999998776
No 160
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=32.23 E-value=15 Score=35.14 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=29.7
Q ss_pred cCCCCccccccccc-Ccee-eeeCCCCcccHHHHHHHHhc--------CCCCCCcCc
Q 026833 120 LGGECVVCLEEYEV-GEVA-REMPCKHKFHANCIEKWLGI--------NGSCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~-~~~~-~~lpC~H~fh~~Ci~~wl~~--------~~tCP~CR~ 166 (232)
.+..|.+|+.-... ..++ ..-.|...||..|.....+. ...|-+|..
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 35669999976432 2222 22348899999998776521 115888864
No 161
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.23 E-value=17 Score=23.80 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=6.7
Q ss_pred CCCCcCcccCCCc
Q 026833 160 SCPVCRYKMPVEE 172 (232)
Q Consensus 160 tCP~CR~~~~~~~ 172 (232)
.||+|..+|....
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 8999998885443
No 162
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=32.20 E-value=32 Score=22.27 Aligned_cols=34 Identities=15% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCCcccccccccCce-eeeeCCCCcccHHHHHHHH
Q 026833 122 GECVVCLEEYEVGEV-AREMPCKHKFHANCIEKWL 155 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~wl 155 (232)
..|.+|-..|..... .....||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 579999888765432 2224599999999986554
No 163
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.15 E-value=34 Score=19.49 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=10.1
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHH
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCI 151 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci 151 (232)
.|.+|.........-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47888887664233344568888888885
No 164
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=31.95 E-value=8.9 Score=34.37 Aligned_cols=35 Identities=31% Similarity=0.686 Sum_probs=20.9
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI 157 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~ 157 (232)
.|.+|+++|..+......-|...||..|+..|+..
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 67777777654333333445556777777777643
No 165
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.02 E-value=65 Score=23.25 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=18.9
Q ss_pred CCCCcccccccccCc---eee-eeCCCCcccHHHHHHHH-hcCCCCCCcCccc
Q 026833 121 GGECVVCLEEYEVGE---VAR-EMPCKHKFHANCIEKWL-GINGSCPVCRYKM 168 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~---~~~-~lpC~H~fh~~Ci~~wl-~~~~tCP~CR~~~ 168 (232)
...|.||-+.+.... ... ..-|+--.|+.|..-=. ..++.||.|+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 568999999864332 211 12377778899985444 4567899998654
No 166
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.88 E-value=38 Score=33.91 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=31.3
Q ss_pred CCcccccccccCceeeeeCCCC-cccHHHHHHHHh--c----CCCCCCcCccc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKH-KFHANCIEKWLG--I----NGSCPVCRYKM 168 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H-~fh~~Ci~~wl~--~----~~tCP~CR~~~ 168 (232)
.|+||-..+.. ...-.|+| ..|..|..+... . ...||+||..+
T Consensus 2 ~c~ic~~s~~~---~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccc---cccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 59999887543 33356999 899999988752 2 34689999855
No 167
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=25 Score=35.08 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=28.4
Q ss_pred CCCcccccccc-cCceeeeeCCCCcccHHHHHHHHhcCCCCCCcC
Q 026833 122 GECVVCLEEYE-VGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 165 (232)
Q Consensus 122 ~~C~IC~e~~~-~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR 165 (232)
..|.+|...=. .....+.+.|+-.||..| |+.....||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 46888876532 222445567999998888 555677899994
No 168
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.34 E-value=9.3 Score=33.74 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=36.0
Q ss_pred CCCCcccccccccC-c--eeeeeC--------CCCcccHHHHHHHHhcC-CCCCCcCcc
Q 026833 121 GGECVVCLEEYEVG-E--VAREMP--------CKHKFHANCIEKWLGIN-GSCPVCRYK 167 (232)
Q Consensus 121 ~~~C~IC~e~~~~~-~--~~~~lp--------C~H~fh~~Ci~~wl~~~-~tCP~CR~~ 167 (232)
...|.||...|... . ..+++. |+|..|..|+..-+... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 45799999998732 2 334456 99999999999987544 589999874
No 170
>PF14353 CpXC: CpXC protein
Probab=29.22 E-value=54 Score=25.14 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=25.1
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhc---CCCCCCcCcccCC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI---NGSCPVCRYKMPV 170 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~tCP~CR~~~~~ 170 (232)
.+|+-|...|....... -.-.....-...-+.. ..+||.|.+.+..
T Consensus 2 itCP~C~~~~~~~v~~~---I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTS---INADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeE---EcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 47999998876543211 1112233334444432 2379999876543
No 171
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.98 E-value=28 Score=25.88 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=10.6
Q ss_pred cccHHHHHHHHh
Q 026833 145 KFHANCIEKWLG 156 (232)
Q Consensus 145 ~fh~~Ci~~wl~ 156 (232)
-||+.|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 172
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.95 E-value=16 Score=34.47 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=27.1
Q ss_pred CCCCcccccccccCce-----eeeeCCCCcccHHHHHHHHhcC
Q 026833 121 GGECVVCLEEYEVGEV-----AREMPCKHKFHANCIEKWLGIN 158 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-----~~~lpC~H~fh~~Ci~~wl~~~ 158 (232)
...||.|....+.... ....+|+|.||+.|+..|....
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 4569999998765541 1123499999999988887543
No 173
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.67 E-value=16 Score=20.62 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=4.5
Q ss_pred CCccccccc
Q 026833 123 ECVVCLEEY 131 (232)
Q Consensus 123 ~C~IC~e~~ 131 (232)
.|+-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 355555543
No 174
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.16 E-value=33 Score=20.74 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=9.6
Q ss_pred CCCcccccccccCc
Q 026833 122 GECVVCLEEYEVGE 135 (232)
Q Consensus 122 ~~C~IC~e~~~~~~ 135 (232)
..|+-|...|..++
T Consensus 3 i~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 3 ITCPNCQTRFRVPD 16 (37)
T ss_pred EECCCCCceEEcCH
Confidence 36888888876543
No 175
>PLN02189 cellulose synthase
Probab=28.13 E-value=63 Score=34.04 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=32.2
Q ss_pred CCCCcccccccccC---ceeeeeC-CCCcccHHHHHHHH-hcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVG---EVAREMP-CKHKFHANCIEKWL-GINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~---~~~~~lp-C~H~fh~~Ci~~wl-~~~~tCP~CR~~~~ 169 (232)
...|.||-+++... +..+... |+--.|..|..-=. ..++.||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 45899999997532 2322233 77778999984322 34668999987553
No 176
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=28.02 E-value=36 Score=25.19 Aligned_cols=36 Identities=22% Similarity=0.573 Sum_probs=26.7
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
..|-||...+.. =+|.||..|-. ....|.+|-+.+.
T Consensus 45 ~~C~~CK~~v~q--------~g~~YCq~CAY----kkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQ--------PGAKYCQTCAY----KKGICAMCGKKIL 80 (90)
T ss_pred cccccccccccc--------CCCccChhhhc----ccCcccccCCeec
Confidence 579999877543 25678999953 3779999987764
No 177
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=27.83 E-value=38 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.752 Sum_probs=12.4
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCc
Q 026833 141 PCKHKFHANCIEKWLGINGSCPVC 164 (232)
Q Consensus 141 pC~H~fh~~Ci~~wl~~~~tCP~C 164 (232)
.|+|.|-.. |.........||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 366655433 22222455679988
No 178
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.75 E-value=14 Score=33.32 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=27.5
Q ss_pred CCCCcccccccccC--------ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 121 GGECVVCLEEYEVG--------EVAREMPCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~--------~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
...||||-..-... ...+ +.+|..|-..|-..+..||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~R-----yL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLR-----YLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCce-----EEEcCCCCCcccccCccCCCCCC
Confidence 34899998763211 1222 44566677789888889999964
No 179
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=27.51 E-value=22 Score=32.20 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCCCcccccccccCceeee-eC--CCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVARE-MP--CKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~-lp--C~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
...||||-..-.... ++. -. =.+.+|..|-..|-..+..||.|..
T Consensus 187 ~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 578999987732110 000 01 1244566688889888889999964
No 180
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=25.43 E-value=23 Score=33.10 Aligned_cols=49 Identities=22% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCcccccccc-------------cC---ceeeeeCCCCcccHHHHHHHHhc---------CCCCCCcCcccC
Q 026833 121 GGECVVCLEEYE-------------VG---EVAREMPCKHKFHANCIEKWLGI---------NGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~-------------~~---~~~~~lpC~H~fh~~Ci~~wl~~---------~~tCP~CR~~~~ 169 (232)
..+|++|+..-. .+ -....-||||+.-.+...-|-+. +..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 679999997610 00 01123689999888888888642 246999987774
No 181
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=24.92 E-value=52 Score=33.14 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=21.3
Q ss_pred eeeeCCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 137 AREMPCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 137 ~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
++.+|-|.+||++|-.+=-..+..|-+|-+
T Consensus 41 IvqVPtGpWfCrKCesqeraarvrCeLCP~ 70 (900)
T KOG0956|consen 41 IVQVPTGPWFCRKCESQERAARVRCELCPH 70 (900)
T ss_pred eEecCCCchhhhhhhhhhhhccceeecccC
Confidence 455777889999997665444567888844
No 182
>PF12773 DZR: Double zinc ribbon
Probab=24.69 E-value=54 Score=20.67 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=6.6
Q ss_pred CCCCCcCccc
Q 026833 159 GSCPVCRYKM 168 (232)
Q Consensus 159 ~tCP~CR~~~ 168 (232)
..||.|...+
T Consensus 30 ~~C~~Cg~~~ 39 (50)
T PF12773_consen 30 KICPNCGAEN 39 (50)
T ss_pred CCCcCCcCCC
Confidence 4677776654
No 183
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.49 E-value=71 Score=33.77 Aligned_cols=48 Identities=27% Similarity=0.469 Sum_probs=31.0
Q ss_pred CCCCcccccccccC---ceeeee-CCCCcccHHHHHH-HHhcCCCCCCcCccc
Q 026833 121 GGECVVCLEEYEVG---EVAREM-PCKHKFHANCIEK-WLGINGSCPVCRYKM 168 (232)
Q Consensus 121 ~~~C~IC~e~~~~~---~~~~~l-pC~H~fh~~Ci~~-wl~~~~tCP~CR~~~ 168 (232)
...|.||-+++... +..+.. -|+--.|+.|..- .-..++.||.|+...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 45899999996433 222222 2666699999832 224566899997654
No 184
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=24.10 E-value=44 Score=22.71 Aligned_cols=16 Identities=38% Similarity=0.879 Sum_probs=12.6
Q ss_pred cCCCCCCcCcccCCCc
Q 026833 157 INGSCPVCRYKMPVEE 172 (232)
Q Consensus 157 ~~~tCP~CR~~~~~~~ 172 (232)
.|+.||+|..+++.++
T Consensus 2 ~HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDE 17 (59)
T ss_pred CCCcCCcCCCcCCcch
Confidence 4678999998888654
No 185
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=23.49 E-value=39 Score=33.18 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=23.8
Q ss_pred hcCCCCcccccccccCc----------eeeeeCCCCcccHHHHHHH
Q 026833 119 ALGGECVVCLEEYEVGE----------VAREMPCKHKFHANCIEKW 154 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~----------~~~~lpC~H~fh~~Ci~~w 154 (232)
+....|+||.|.|+.-. ..+.+-=|.+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 34578999999986421 1112324889999998654
No 186
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=23.28 E-value=32 Score=34.18 Aligned_cols=26 Identities=35% Similarity=0.989 Sum_probs=20.2
Q ss_pred CCCCcccHHHHHHHHhcC-----CCCCCcCc
Q 026833 141 PCKHKFHANCIEKWLGIN-----GSCPVCRY 166 (232)
Q Consensus 141 pC~H~fh~~Ci~~wl~~~-----~tCP~CR~ 166 (232)
.|+-.||..|+.-|+... -.||-||.
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 388999999999998432 25888875
No 187
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=37 Score=23.19 Aligned_cols=14 Identities=43% Similarity=1.023 Sum_probs=10.6
Q ss_pred CCCCcCcccCCCcc
Q 026833 160 SCPVCRYKMPVEEE 173 (232)
Q Consensus 160 tCP~CR~~~~~~~~ 173 (232)
.||+||.++....+
T Consensus 10 aCP~~kg~L~~~~~ 23 (60)
T COG2835 10 ACPVCKGPLVYDEE 23 (60)
T ss_pred eccCcCCcceEecc
Confidence 59999998765443
No 188
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.25 E-value=70 Score=28.45 Aligned_cols=44 Identities=27% Similarity=0.481 Sum_probs=27.3
Q ss_pred CCCcccccccccCceee-eeCCC-CcccHHHHHHHH-hcCCCCCCcC
Q 026833 122 GECVVCLEEYEVGEVAR-EMPCK-HKFHANCIEKWL-GINGSCPVCR 165 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~-~lpC~-H~fh~~Ci~~wl-~~~~tCP~CR 165 (232)
..|.||++....+..-. .|--. =.-|++|..+|- ..+..||.-|
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~prsk 77 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPRSK 77 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCccc
Confidence 47888888865553211 12122 246899999995 5566788444
No 189
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.00 E-value=46 Score=19.52 Aligned_cols=9 Identities=44% Similarity=0.921 Sum_probs=6.6
Q ss_pred CCCCCCcCc
Q 026833 158 NGSCPVCRY 166 (232)
Q Consensus 158 ~~tCP~CR~ 166 (232)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 447999965
No 190
>PLN02436 cellulose synthase A
Probab=21.99 E-value=94 Score=32.93 Aligned_cols=49 Identities=29% Similarity=0.565 Sum_probs=31.9
Q ss_pred CCCCccccccccc---CceeeeeC-CCCcccHHHHHHHH-hcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEV---GEVAREMP-CKHKFHANCIEKWL-GINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~---~~~~~~lp-C~H~fh~~Ci~~wl-~~~~tCP~CR~~~~ 169 (232)
...|.||-+++.. ++..+... |+--.|..|..-=. ..++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4589999999643 33322223 77778999984322 34568999987553
No 191
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.91 E-value=44 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=9.9
Q ss_pred CCCCCCcCcccCC
Q 026833 158 NGSCPVCRYKMPV 170 (232)
Q Consensus 158 ~~tCP~CR~~~~~ 170 (232)
...||+|..++..
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 3579999987754
No 192
>PRK11827 hypothetical protein; Provisional
Probab=21.81 E-value=33 Score=23.46 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=8.0
Q ss_pred HHhcCCCCCCcCcccC
Q 026833 154 WLGINGSCPVCRYKMP 169 (232)
Q Consensus 154 wl~~~~tCP~CR~~~~ 169 (232)
||..--.||+|+..+.
T Consensus 4 ~LLeILaCP~ckg~L~ 19 (60)
T PRK11827 4 RLLEIIACPVCNGKLW 19 (60)
T ss_pred HHHhheECCCCCCcCe
Confidence 3333345666665554
No 193
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=21.62 E-value=57 Score=28.33 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=16.7
Q ss_pred CCCcccccccccCceeeeeCCCCcc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKF 146 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~f 146 (232)
..||||...+.........+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4799999998654433333456877
No 194
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.46 E-value=58 Score=28.72 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=31.3
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc--CCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI--NGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~tCP~CR~ 166 (232)
...|||=+..+..+ ++.-.|+|+|-+.-|...+.. .-.||+=..
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 35788876666555 344569999999999999855 335887543
No 195
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.44 E-value=25 Score=23.08 Aligned_cols=14 Identities=29% Similarity=0.823 Sum_probs=12.1
Q ss_pred CCCCcccHHHHHHH
Q 026833 141 PCKHKFHANCIEKW 154 (232)
Q Consensus 141 pC~H~fh~~Ci~~w 154 (232)
.|++.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 58999999998887
No 196
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.27 E-value=46 Score=25.46 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=26.8
Q ss_pred cCCCCccccccccc--CceeeeeCCCCcccHHHHHHHHhcCC--CCCCcCc
Q 026833 120 LGGECVVCLEEYEV--GEVAREMPCKHKFHANCIEKWLGING--SCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~--~~~~~~lpC~H~fh~~Ci~~wl~~~~--tCP~CR~ 166 (232)
.+..|.+|...|.- +.......|+|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 35689999987632 23444556999999888543 11111 4777754
No 197
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=21.25 E-value=42 Score=31.52 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=22.6
Q ss_pred cccccccccCceeeeeCCCCcccHHHHHHH
Q 026833 125 VVCLEEYEVGEVAREMPCKHKFHANCIEKW 154 (232)
Q Consensus 125 ~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~w 154 (232)
.||.-.+-..+. .||+..+|..|+..|
T Consensus 92 ~~C~~VvCNNE~---C~~~~~MH~qCF~~W 118 (526)
T KOG3816|consen 92 LICSFVVCNNEH---CPCSTWMHLQCFYEW 118 (526)
T ss_pred hhceEEeecCCC---CChhhHHHHHHHHHH
Confidence 478777766666 789999999999999
No 198
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.24 E-value=50 Score=21.45 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=9.5
Q ss_pred CCCCccccccccc
Q 026833 121 GGECVVCLEEYEV 133 (232)
Q Consensus 121 ~~~C~IC~e~~~~ 133 (232)
...||.|.+.|..
T Consensus 2 ~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 2 SFTCPYCGKGFSE 14 (54)
T ss_pred CcCCCCCCCccCH
Confidence 3579999886553
No 199
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.66 E-value=77 Score=26.95 Aligned_cols=37 Identities=16% Similarity=0.451 Sum_probs=18.5
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYK 167 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~ 167 (232)
.|.+|-..+... ...+|..|...|-.....||.|-.+
T Consensus 7 ~C~~C~~~~~~~--------~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 7 LCWLCRMPLALS--------HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred cCccCCCccCCC--------CCcccHHHHhhCCcccCcCccCCCc
Confidence 577776654221 1124566665543223456666544
No 200
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.65 E-value=65 Score=27.89 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=13.6
Q ss_pred cHHHHHHHHhcCCCCCCcCcc
Q 026833 147 HANCIEKWLGINGSCPVCRYK 167 (232)
Q Consensus 147 h~~Ci~~wl~~~~tCP~CR~~ 167 (232)
|..|...--.....||+|+..
T Consensus 197 C~sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred hHhHHHHHhcCCCCCcccccc
Confidence 445554444566799999763
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.32 E-value=57 Score=33.20 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=27.5
Q ss_pred cCCCCcccccccccC----------ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 120 LGGECVVCLEEYEVG----------EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~----------~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
.+..|+-|...|..- .-+....|+|..|..=|. ....||+|...+
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 456788787776421 112223488887776543 367899996543
No 202
>PLN02400 cellulose synthase
Probab=20.30 E-value=83 Score=33.33 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=31.1
Q ss_pred CCCCcccccccccC---ceee-eeCCCCcccHHHHHH-HHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVG---EVAR-EMPCKHKFHANCIEK-WLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~---~~~~-~lpC~H~fh~~Ci~~-wl~~~~tCP~CR~~~~ 169 (232)
...|.||-+++... +..+ .--|+--.|+.|..- .-..++.||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 45899999996433 2222 223666689999832 1234568999986553
Done!