Query 026833
Match_columns 232
No_of_seqs 297 out of 1807
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 23:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.2E-17 2.1E-21 119.0 6.3 77 94-170 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 4.4E-17 1.5E-21 115.2 2.8 71 101-171 3-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.5 1.8E-14 6.3E-19 99.8 5.3 54 118-171 11-64 (69)
4 1iym_A EL5; ring-H2 finger, ub 99.5 1.2E-14 4E-19 96.3 4.0 50 120-169 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.5 2.1E-14 7.1E-19 100.9 4.7 52 120-171 14-65 (74)
6 2ect_A Ring finger protein 126 99.5 1.8E-14 6.1E-19 102.3 4.2 54 119-172 13-66 (78)
7 2ecm_A Ring finger and CHY zin 99.4 1.6E-13 5.6E-18 90.6 4.0 50 120-169 4-54 (55)
8 1v87_A Deltex protein 2; ring- 99.4 2.5E-13 8.4E-18 103.1 5.2 51 121-171 25-95 (114)
9 3ng2_A RNF4, snurf, ring finge 99.4 1.8E-13 6.2E-18 95.0 3.7 52 120-171 9-64 (71)
10 2ecl_A Ring-box protein 2; RNF 99.4 1.9E-13 6.6E-18 98.2 3.7 50 121-170 15-76 (81)
11 2ea6_A Ring finger protein 4; 99.4 2.4E-13 8.3E-18 93.6 3.7 51 120-170 14-68 (69)
12 2xeu_A Ring finger protein 4; 99.3 3.8E-13 1.3E-17 91.3 3.6 51 121-171 3-57 (64)
13 3dpl_R Ring-box protein 1; ubi 99.3 7.6E-13 2.6E-17 100.1 4.7 50 120-169 36-100 (106)
14 2ecn_A Ring finger protein 141 99.3 4.6E-13 1.6E-17 92.9 1.9 49 120-172 14-62 (70)
15 2djb_A Polycomb group ring fin 99.3 1.3E-12 4.6E-17 91.3 4.1 51 120-172 14-64 (72)
16 1chc_A Equine herpes virus-1 r 99.3 1.4E-12 4.9E-17 89.8 3.5 49 120-170 4-52 (68)
17 2d8t_A Dactylidin, ring finger 99.3 1.1E-12 3.9E-17 91.4 2.8 47 120-169 14-60 (71)
18 2ct2_A Tripartite motif protei 99.3 3E-12 1E-16 92.2 4.4 52 120-171 14-69 (88)
19 2d8s_A Cellular modulator of i 99.2 3.1E-12 1.1E-16 92.0 3.6 52 120-172 14-72 (80)
20 4ayc_A E3 ubiquitin-protein li 99.2 2.9E-12 1E-16 100.7 3.1 49 120-171 52-100 (138)
21 2csy_A Zinc finger protein 183 99.2 4.1E-12 1.4E-16 90.7 3.4 47 120-169 14-60 (81)
22 2ysl_A Tripartite motif-contai 99.2 5.2E-12 1.8E-16 88.1 3.6 49 120-171 19-70 (73)
23 2yur_A Retinoblastoma-binding 99.2 6.3E-12 2.2E-16 88.4 3.9 48 120-170 14-64 (74)
24 2ecy_A TNF receptor-associated 99.2 6.7E-12 2.3E-16 86.1 3.9 49 120-171 14-63 (66)
25 4a0k_B E3 ubiquitin-protein li 99.2 1.5E-12 5.3E-17 100.0 0.2 50 120-169 47-111 (117)
26 3lrq_A E3 ubiquitin-protein li 99.2 5.8E-12 2E-16 93.8 2.7 52 119-172 20-72 (100)
27 1t1h_A Gspef-atpub14, armadill 99.2 1.4E-11 4.6E-16 87.2 3.8 49 120-171 7-56 (78)
28 2ecw_A Tripartite motif-contai 99.2 1.8E-11 6.3E-16 87.2 4.0 49 120-171 18-72 (85)
29 4ap4_A E3 ubiquitin ligase RNF 99.2 1.7E-11 5.7E-16 94.4 4.0 53 120-172 6-62 (133)
30 2ecv_A Tripartite motif-contai 99.1 2.2E-11 7.4E-16 86.8 3.9 49 120-171 18-72 (85)
31 2egp_A Tripartite motif-contai 99.1 7.6E-12 2.6E-16 88.4 1.3 49 120-171 11-66 (79)
32 2ckl_A Polycomb group ring fin 99.1 1.8E-11 6.2E-16 92.0 3.5 51 119-171 13-63 (108)
33 2y43_A E3 ubiquitin-protein li 99.1 1.6E-11 5.6E-16 90.8 3.1 50 119-170 20-69 (99)
34 2ct0_A Non-SMC element 1 homol 99.1 3.4E-11 1.2E-15 85.2 4.5 52 121-174 15-68 (74)
35 1g25_A CDK-activating kinase a 99.1 3.5E-11 1.2E-15 82.2 4.1 51 121-171 3-56 (65)
36 2ysj_A Tripartite motif-contai 99.1 3.7E-11 1.3E-15 81.5 3.8 42 120-164 19-63 (63)
37 3fl2_A E3 ubiquitin-protein li 99.1 3.1E-11 1E-15 93.0 3.3 49 119-170 50-99 (124)
38 3ztg_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 87.3 3.5 47 120-169 12-61 (92)
39 1jm7_A BRCA1, breast cancer ty 99.1 6.5E-11 2.2E-15 89.0 4.0 50 120-172 20-72 (112)
40 2ecj_A Tripartite motif-contai 99.1 6.4E-11 2.2E-15 78.7 3.5 42 120-164 14-58 (58)
41 2ckl_B Ubiquitin ligase protei 99.0 1E-10 3.5E-15 94.3 4.0 48 121-170 54-102 (165)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 7E-11 2.4E-15 90.9 2.7 52 120-171 71-126 (133)
43 1z6u_A NP95-like ring finger p 99.0 9.1E-11 3.1E-15 93.7 3.4 50 119-171 76-126 (150)
44 1e4u_A Transcriptional repress 99.0 1.7E-10 5.9E-15 82.3 3.9 55 120-174 10-66 (78)
45 3hct_A TNF receptor-associated 99.0 1.2E-10 4E-15 89.1 2.3 49 120-171 17-66 (118)
46 3l11_A E3 ubiquitin-protein li 99.0 4.8E-11 1.6E-15 90.6 -0.1 47 121-170 15-62 (115)
47 2kr4_A Ubiquitin conjugation f 99.0 2.9E-10 1E-14 82.3 3.6 49 120-171 13-61 (85)
48 1rmd_A RAG1; V(D)J recombinati 99.0 1.9E-10 6.6E-15 87.3 2.6 51 119-172 21-72 (116)
49 2kre_A Ubiquitin conjugation f 98.9 3.5E-10 1.2E-14 84.4 3.6 50 120-172 28-77 (100)
50 1wgm_A Ubiquitin conjugation f 98.9 4.8E-10 1.6E-14 83.4 3.8 50 120-172 21-71 (98)
51 1bor_A Transcription factor PM 98.9 2.5E-10 8.5E-15 76.1 1.4 47 120-172 5-51 (56)
52 1jm7_B BARD1, BRCA1-associated 98.9 4.4E-10 1.5E-14 85.7 2.3 48 119-171 20-68 (117)
53 2vje_A E3 ubiquitin-protein li 98.9 7.2E-10 2.5E-14 75.9 2.9 47 120-169 7-56 (64)
54 3knv_A TNF receptor-associated 98.8 4.9E-10 1.7E-14 88.6 1.3 49 120-171 30-79 (141)
55 2y1n_A E3 ubiquitin-protein li 98.8 1.8E-09 6E-14 98.3 4.1 47 121-170 332-379 (389)
56 2vje_B MDM4 protein; proto-onc 98.8 1.5E-09 5.3E-14 74.0 2.8 49 120-169 6-55 (63)
57 4ic3_A E3 ubiquitin-protein li 98.8 1.3E-09 4.3E-14 76.7 1.6 43 120-169 23-66 (74)
58 2yu4_A E3 SUMO-protein ligase 98.7 4E-09 1.4E-13 77.5 2.1 48 120-170 6-63 (94)
59 2c2l_A CHIP, carboxy terminus 98.7 4.5E-09 1.5E-13 90.3 2.8 49 120-171 207-256 (281)
60 3hcs_A TNF receptor-associated 98.7 5.2E-09 1.8E-13 84.5 1.8 49 120-171 17-66 (170)
61 2ecg_A Baculoviral IAP repeat- 98.6 1.2E-08 4E-13 71.8 2.3 43 121-170 25-68 (75)
62 3k1l_B Fancl; UBC, ring, RWD, 98.6 6.7E-09 2.3E-13 92.7 1.3 52 119-170 306-373 (381)
63 2f42_A STIP1 homology and U-bo 98.5 2.6E-08 8.8E-13 81.7 2.9 49 120-171 105-154 (179)
64 1wim_A KIAA0161 protein; ring 98.5 3.3E-08 1.1E-12 72.3 3.2 47 121-167 5-61 (94)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.5 4.2E-08 1.4E-12 66.4 3.4 48 120-170 5-59 (60)
66 2yho_A E3 ubiquitin-protein li 98.5 2.9E-08 1E-12 70.7 1.0 44 120-170 17-61 (79)
67 3htk_C E3 SUMO-protein ligase 98.4 5.8E-08 2E-12 83.9 2.6 51 120-172 180-234 (267)
68 2ea5_A Cell growth regulator w 98.4 9.5E-08 3.3E-12 66.1 2.7 44 120-170 14-58 (68)
69 2bay_A PRE-mRNA splicing facto 98.4 7.9E-08 2.7E-12 65.2 1.7 49 121-172 3-52 (61)
70 3t6p_A Baculoviral IAP repeat- 98.4 8.3E-08 2.8E-12 86.3 1.4 44 119-169 293-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.0 4.5E-06 1.5E-10 61.7 3.8 46 123-170 3-49 (101)
72 3nw0_A Non-structural maintena 97.9 6.4E-06 2.2E-10 70.3 3.8 52 121-174 180-233 (238)
73 2ko5_A Ring finger protein Z; 96.4 0.0013 4.3E-08 47.9 2.0 47 122-173 29-76 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.012 4.2E-07 42.6 2.4 36 120-155 2-38 (101)
75 2lri_C Autoimmune regulator; Z 94.3 0.035 1.2E-06 37.7 3.3 45 120-167 11-59 (66)
76 1wil_A KIAA1045 protein; ring 91.4 0.17 5.7E-06 36.0 3.4 34 120-154 14-47 (89)
77 2l5u_A Chromodomain-helicase-D 88.2 0.24 8.1E-06 32.8 2.1 44 120-166 10-57 (61)
78 2k16_A Transcription initiatio 87.8 0.13 4.6E-06 35.2 0.7 50 120-169 17-70 (75)
79 1we9_A PHD finger family prote 87.5 0.083 2.9E-06 35.2 -0.6 47 120-166 5-57 (64)
80 1fp0_A KAP-1 corepressor; PHD 87.2 0.24 8.3E-06 35.5 1.7 48 119-169 23-74 (88)
81 1f62_A Transcription factor WS 86.2 0.39 1.3E-05 30.3 2.1 44 123-166 2-49 (51)
82 3lqh_A Histone-lysine N-methyl 84.7 0.36 1.2E-05 39.2 1.8 49 121-169 2-65 (183)
83 3u5n_A E3 ubiquitin-protein li 83.9 0.2 6.7E-06 41.2 -0.1 46 120-168 6-55 (207)
84 3o36_A Transcription intermedi 83.2 0.36 1.2E-05 38.8 1.1 46 120-168 3-52 (184)
85 1mm2_A MI2-beta; PHD, zinc fin 82.4 0.29 1E-05 32.3 0.3 45 120-167 8-56 (61)
86 2puy_A PHD finger protein 21A; 82.3 0.099 3.4E-06 34.5 -2.1 46 120-168 4-53 (60)
87 2lv9_A Histone-lysine N-methyl 80.2 0.5 1.7E-05 34.2 0.9 44 122-166 29-75 (98)
88 2yql_A PHD finger protein 21A; 80.0 0.16 5.5E-06 33.0 -1.7 43 120-165 8-54 (56)
89 2kgg_A Histone demethylase jar 78.2 1.6 5.5E-05 27.6 2.8 43 123-165 4-52 (52)
90 3i2d_A E3 SUMO-protein ligase 78.1 1.6 5.4E-05 39.2 3.6 52 121-174 249-304 (371)
91 3m62_A Ubiquitin conjugation f 78.0 1.2 4.1E-05 44.7 3.1 49 121-172 891-940 (968)
92 1weu_A Inhibitor of growth fam 77.7 1 3.5E-05 32.3 1.9 44 120-167 35-85 (91)
93 4fo9_A E3 SUMO-protein ligase 76.6 1.8 6.3E-05 38.6 3.6 51 121-173 215-269 (360)
94 1z60_A TFIIH basal transcripti 76.0 1.4 4.9E-05 29.0 2.1 43 122-164 16-58 (59)
95 1wem_A Death associated transc 75.9 0.78 2.7E-05 31.4 0.8 46 121-167 16-70 (76)
96 2l43_A N-teminal domain from h 75.2 0.6 2E-05 33.2 0.0 50 120-169 24-77 (88)
97 1wep_A PHF8; structural genomi 75.2 1.6 5.5E-05 30.1 2.3 47 121-168 12-64 (79)
98 1wen_A Inhibitor of growth fam 73.7 2.3 7.9E-05 28.9 2.8 44 120-167 15-65 (71)
99 2ysm_A Myeloid/lymphoid or mix 72.6 0.93 3.2E-05 33.2 0.6 46 120-165 6-55 (111)
100 2lbm_A Transcriptional regulat 71.8 4.1 0.00014 31.5 4.1 45 119-166 61-116 (142)
101 2ro1_A Transcription intermedi 71.7 0.87 3E-05 36.9 0.2 44 121-167 2-49 (189)
102 2cs3_A Protein C14ORF4, MY039 71.5 2.8 9.6E-05 29.5 2.8 43 121-164 15-64 (93)
103 2vpb_A Hpygo1, pygopus homolog 70.4 3 0.0001 27.8 2.7 32 120-151 7-40 (65)
104 1xwh_A Autoimmune regulator; P 70.2 0.53 1.8E-05 31.5 -1.2 44 120-166 7-54 (66)
105 1wew_A DNA-binding family prot 70.1 1.2 4.2E-05 30.7 0.7 47 120-167 15-72 (78)
106 2e6r_A Jumonji/ARID domain-con 69.1 0.53 1.8E-05 33.8 -1.5 48 120-167 15-66 (92)
107 1wev_A Riken cDNA 1110020M19; 67.8 0.82 2.8E-05 32.4 -0.7 50 119-168 14-73 (88)
108 2ku3_A Bromodomain-containing 66.2 1.3 4.5E-05 30.1 0.2 47 120-166 15-65 (71)
109 3asl_A E3 ubiquitin-protein li 65.7 1.2 4.2E-05 30.1 -0.1 44 123-166 20-68 (70)
110 3shb_A E3 ubiquitin-protein li 65.3 1.2 4E-05 30.9 -0.2 44 123-166 28-76 (77)
111 3v43_A Histone acetyltransfera 65.0 7.2 0.00025 28.5 4.1 32 121-152 5-42 (112)
112 3o70_A PHD finger protein 13; 63.7 1 3.5E-05 30.4 -0.8 46 120-166 18-66 (68)
113 2ri7_A Nucleosome-remodeling f 63.2 1.1 3.9E-05 35.3 -0.7 46 120-166 7-58 (174)
114 3v43_A Histone acetyltransfera 61.9 2.3 7.9E-05 31.3 0.8 44 123-166 63-111 (112)
115 2xb1_A Pygopus homolog 2, B-ce 60.8 3.4 0.00012 30.2 1.6 47 122-168 4-62 (105)
116 2yt5_A Metal-response element- 58.6 3.1 0.00011 27.4 0.9 49 120-168 5-62 (66)
117 1y02_A CARP2, FYVE-ring finger 58.2 1.1 3.8E-05 33.8 -1.5 46 121-166 19-65 (120)
118 2d8v_A Zinc finger FYVE domain 57.9 4.7 0.00016 27.1 1.7 31 120-154 7-38 (67)
119 1wee_A PHD finger family prote 57.6 0.88 3E-05 30.9 -2.0 46 121-167 16-66 (72)
120 2e6s_A E3 ubiquitin-protein li 57.0 2.5 8.6E-05 29.2 0.2 45 122-166 27-76 (77)
121 3t7l_A Zinc finger FYVE domain 56.3 7.2 0.00025 27.5 2.6 35 121-155 20-55 (90)
122 3ql9_A Transcriptional regulat 55.4 12 0.00041 28.4 3.9 45 119-166 55-110 (129)
123 1joc_A EEA1, early endosomal a 55.2 7.2 0.00025 29.3 2.6 34 121-154 69-103 (125)
124 2ysm_A Myeloid/lymphoid or mix 53.0 1.8 6.3E-05 31.6 -1.1 44 123-166 56-103 (111)
125 2yw8_A RUN and FYVE domain-con 52.8 7.3 0.00025 26.9 2.1 34 121-154 19-53 (82)
126 1weo_A Cellulose synthase, cat 52.6 19 0.00066 25.6 4.3 49 121-169 16-69 (93)
127 2i50_A Ubiquitin carboxyl-term 51.3 3.3 0.00011 31.4 0.1 59 140-200 5-68 (126)
128 3ask_A E3 ubiquitin-protein li 51.2 3.8 0.00013 34.2 0.5 45 122-166 175-224 (226)
129 4gne_A Histone-lysine N-methyl 51.1 7.3 0.00025 28.6 2.0 48 119-171 13-66 (107)
130 3ihp_A Ubiquitin carboxyl-term 51.1 4 0.00014 40.4 0.7 60 139-200 173-241 (854)
131 1z2q_A LM5-1; membrane protein 50.7 8.4 0.00029 26.7 2.2 34 121-154 21-55 (84)
132 1iml_A CRIP, cysteine rich int 50.1 6 0.0002 26.3 1.3 38 123-170 2-39 (76)
133 1vfy_A Phosphatidylinositol-3- 49.9 9.4 0.00032 25.7 2.3 32 122-153 12-44 (73)
134 1dvp_A HRS, hepatocyte growth 46.6 7.5 0.00026 31.8 1.6 33 121-153 161-194 (220)
135 2cu8_A Cysteine-rich protein 2 46.4 8.6 0.00029 25.5 1.6 40 121-170 9-48 (76)
136 1x4u_A Zinc finger, FYVE domai 45.9 9.2 0.00031 26.5 1.8 33 121-153 14-47 (84)
137 2o35_A Hypothetical protein DU 45.7 8.2 0.00028 28.1 1.4 12 145-156 42-53 (105)
138 1wfk_A Zinc finger, FYVE domai 45.6 9.3 0.00032 26.8 1.8 34 121-154 9-43 (88)
139 3zyq_A Hepatocyte growth facto 45.5 8.5 0.00029 31.7 1.8 34 121-154 164-198 (226)
140 3fyb_A Protein of unknown func 45.4 8.4 0.00029 28.0 1.4 12 145-156 41-52 (104)
141 2kwj_A Zinc finger protein DPF 44.3 1.5 5E-05 32.5 -2.8 45 123-167 60-108 (114)
142 2rsd_A E3 SUMO-protein ligase 44.3 1.2 4.1E-05 29.9 -3.0 44 122-166 11-64 (68)
143 2g45_A Ubiquitin carboxyl-term 44.2 5.5 0.00019 30.3 0.4 51 149-201 2-61 (129)
144 2vnf_A ING 4, P29ING4, inhibit 43.8 3 0.0001 27.3 -1.1 42 121-166 10-58 (60)
145 3c6w_A P28ING5, inhibitor of g 43.5 3.1 0.00011 27.1 -1.0 42 121-166 9-57 (59)
146 1wd2_A Ariadne-1 protein homol 43.4 3.4 0.00012 27.1 -0.8 37 121-157 6-47 (60)
147 2co8_A NEDD9 interacting prote 41.4 11 0.00038 25.5 1.6 41 121-171 15-55 (82)
148 1zbd_B Rabphilin-3A; G protein 40.8 10 0.00034 28.9 1.4 32 121-152 55-88 (134)
149 2dj7_A Actin-binding LIM prote 40.5 10 0.00034 25.7 1.2 39 121-169 15-53 (80)
150 2jne_A Hypothetical protein YF 38.7 11 0.00036 27.4 1.1 42 120-169 31-72 (101)
151 3mpx_A FYVE, rhogef and PH dom 38.4 6.6 0.00023 35.0 0.0 35 121-155 375-410 (434)
152 2jvx_A NF-kappa-B essential mo 37.6 11 0.00037 21.0 0.8 14 159-172 4-17 (28)
153 1zfo_A LAsp-1; LIM domain, zin 36.5 20 0.00069 19.8 1.9 28 121-150 3-30 (31)
154 2jmi_A Protein YNG1, ING1 homo 36.1 11 0.00039 26.7 1.0 46 119-166 24-75 (90)
155 2k2d_A Ring finger and CHY zin 35.0 24 0.0008 24.3 2.4 21 188-208 49-69 (79)
156 2pv0_B DNA (cytosine-5)-methyl 33.7 26 0.00088 31.5 3.1 43 120-165 92-146 (386)
157 3a1b_A DNA (cytosine-5)-methyl 33.1 26 0.00088 27.5 2.7 36 119-157 77-114 (159)
158 2gmg_A Hypothetical protein PF 33.0 8.8 0.0003 28.2 -0.1 24 140-168 71-94 (105)
159 2g6q_A Inhibitor of growth pro 32.2 6 0.0002 26.0 -1.0 44 121-166 11-59 (62)
160 1x62_A C-terminal LIM domain p 31.8 22 0.00076 23.6 1.9 38 121-169 15-52 (79)
161 2zet_C Melanophilin; complex, 30.6 22 0.00076 27.6 1.9 46 120-166 67-116 (153)
162 2l4z_A DNA endonuclease RBBP8, 29.8 18 0.0006 26.8 1.1 39 121-169 61-99 (123)
163 1x63_A Skeletal muscle LIM-pro 29.7 31 0.0011 22.9 2.3 42 121-171 15-56 (82)
164 1m3v_A FLIN4, fusion of the LI 29.5 54 0.0018 23.7 3.8 48 122-170 33-81 (122)
165 3kv5_D JMJC domain-containing 28.9 7.1 0.00024 36.2 -1.5 44 123-167 39-88 (488)
166 1x4k_A Skeletal muscle LIM-pro 28.5 35 0.0012 21.9 2.4 42 121-171 5-46 (72)
167 1x64_A Alpha-actinin-2 associa 28.4 30 0.001 23.5 2.1 40 121-171 25-64 (89)
168 1x4l_A Skeletal muscle LIM-pro 28.3 32 0.0011 22.2 2.1 40 121-169 5-46 (72)
169 2d8z_A Four and A half LIM dom 27.6 32 0.0011 22.0 2.0 38 121-169 5-42 (70)
170 1x61_A Thyroid receptor intera 27.6 37 0.0013 21.8 2.4 40 121-169 5-44 (72)
171 3mjh_B Early endosome antigen 27.1 20 0.00067 20.8 0.8 11 160-170 7-17 (34)
172 1a7i_A QCRP2 (LIM1); LIM domai 27.1 18 0.00063 24.1 0.7 41 121-171 7-47 (81)
173 2jrp_A Putative cytoplasmic pr 26.6 28 0.00094 24.3 1.6 40 121-168 2-41 (81)
174 2dar_A PDZ and LIM domain prot 26.5 26 0.00087 24.0 1.4 39 121-170 25-63 (90)
175 1wyh_A SLIM 2, skeletal muscle 26.4 33 0.0011 22.0 2.0 41 121-170 5-45 (72)
176 2a20_A Regulating synaptic mem 26.4 26 0.0009 23.0 1.3 35 120-154 8-43 (62)
177 1v6g_A Actin binding LIM prote 25.9 33 0.0011 22.7 1.9 39 121-170 15-53 (81)
178 2d8y_A Eplin protein; LIM doma 25.8 37 0.0013 23.2 2.2 41 121-171 15-55 (91)
179 2l3k_A Rhombotin-2, linker, LI 25.4 25 0.00085 25.6 1.3 37 123-168 10-46 (123)
180 2pk7_A Uncharacterized protein 25.0 17 0.00059 24.4 0.3 11 160-170 28-38 (69)
181 1x68_A FHL5 protein; four-and- 24.9 37 0.0012 22.2 2.0 40 121-169 5-46 (76)
182 3f6q_B LIM and senescent cell 24.7 30 0.001 22.0 1.5 41 121-170 11-51 (72)
183 2fiy_A Protein FDHE homolog; F 24.6 7.5 0.00026 33.9 -2.1 47 120-167 181-231 (309)
184 2d8x_A Protein pinch; LIM doma 23.2 34 0.0012 21.9 1.5 40 121-171 5-44 (70)
185 1wig_A KIAA1808 protein; LIM d 23.0 45 0.0015 21.7 2.1 38 121-169 5-42 (73)
186 3pwf_A Rubrerythrin; non heme 23.0 36 0.0012 26.7 1.8 26 135-167 137-162 (170)
187 3vhs_A ATPase wrnip1; zinc fin 22.8 22 0.00075 19.3 0.4 12 160-171 8-19 (29)
188 1g47_A Pinch protein; LIM doma 22.6 34 0.0012 22.3 1.4 41 121-170 11-51 (77)
189 2cor_A Pinch protein; LIM doma 22.6 43 0.0015 22.2 2.0 40 121-171 15-54 (79)
190 2jmo_A Parkin; IBR, E3 ligase, 22.4 6.9 0.00023 26.9 -2.2 16 141-156 55-70 (80)
191 2xjy_A Rhombotin-2; oncoprotei 22.2 62 0.0021 23.4 3.0 48 122-170 30-78 (131)
192 2cur_A Skeletal muscle LIM-pro 21.5 33 0.0011 21.9 1.2 38 121-169 5-42 (69)
193 2jny_A Uncharacterized BCR; st 21.2 19 0.00064 24.1 -0.2 19 153-171 5-23 (67)
194 2lq6_A Bromodomain-containing 21.0 46 0.0016 23.1 1.9 32 121-153 17-50 (87)
195 2cuq_A Four and A half LIM dom 20.0 55 0.0019 21.4 2.1 38 121-169 15-52 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=118.96 Aligned_cols=77 Identities=44% Similarity=0.905 Sum_probs=66.3
Q ss_pred CCCCCCCHHHHHcCCceeccCch-hhhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 94 DGQPPASKASVEAMPSIKVGESE-EEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 94 ~g~~~as~~~i~~l~~~~~~~~~-~~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
.+..+++++.|+.||...+.... ....+..|+||++.|..+..++.++|+|.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 44678999999999999887643 234567899999999988888889999999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-17 Score=115.24 Aligned_cols=71 Identities=34% Similarity=0.826 Sum_probs=61.0
Q ss_pred HHHHHcCCceeccCchhhhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 101 KASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 101 ~~~i~~l~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...++.||..++.......++..|+||++.|..+..++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 3 ~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 3 SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567888888877655566789999999999888888899999999999999999899999999988653
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=99.81 Aligned_cols=54 Identities=39% Similarity=0.954 Sum_probs=47.5
Q ss_pred hhcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 118 EALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 118 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...+..|+||++.|..+..++.++|+|.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999998777788899999999999999999889999999988654
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.50 E-value=1.2e-14 Score=96.33 Aligned_cols=50 Identities=52% Similarity=1.133 Sum_probs=45.1
Q ss_pred cCCCCcccccccccCceeeeeC-CCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
++..|+||++.|..+..+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3578999999999887777887 9999999999999999999999998774
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=100.88 Aligned_cols=52 Identities=37% Similarity=0.870 Sum_probs=46.7
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
.+..|+||++.|..+..+..++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4678999999999888888889999999999999999889999999988543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=1.8e-14 Score=102.26 Aligned_cols=54 Identities=46% Similarity=1.045 Sum_probs=47.8
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
..+..|+||++.|..+..+..++|+|.||..||.+|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 346799999999998887788999999999999999998899999999886544
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.6e-13 Score=90.62 Aligned_cols=50 Identities=32% Similarity=0.687 Sum_probs=42.9
Q ss_pred cCCCCcccccccccC-ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVG-EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~-~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
.+..|+||++.|... ..+..++|+|.||..||.+|+....+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999998653 35677899999999999999988899999998764
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.39 E-value=2.5e-13 Score=103.08 Aligned_cols=51 Identities=27% Similarity=0.659 Sum_probs=41.4
Q ss_pred CCCCcccccccccCc---------------eeeeeCCCCcccHHHHHHHH-----hcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGE---------------VAREMPCKHKFHANCIEKWL-----GINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl-----~~~~tCP~CR~~~~~~ 171 (232)
+..|+||++.|..+. .++.++|+|.||..||..|+ ..+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999996543 33468899999999999999 4567899999887543
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=1.8e-13 Score=94.98 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=44.5
Q ss_pred cCCCCcccccccccC----ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVG----EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
++..|+||++.|..+ ..+..++|+|.||..||.+|+..+.+||+||..+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 357899999998764 3446789999999999999999899999999988644
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=98.18 Aligned_cols=50 Identities=26% Similarity=0.687 Sum_probs=40.7
Q ss_pred CCCCccccccccc-----------CceeeeeC-CCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEV-----------GEVAREMP-CKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~-----------~~~~~~lp-C~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
+..|+||++.|.. ...++.++ |+|.||..||.+||..+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 5678888888854 33344555 99999999999999999999999998754
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=93.60 Aligned_cols=51 Identities=25% Similarity=0.604 Sum_probs=43.5
Q ss_pred cCCCCcccccccccC----ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVG----EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
....|+||++.|..+ ..+..++|+|.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 467899999998764 334678999999999999999989999999998753
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=3.8e-13 Score=91.25 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=43.9
Q ss_pred CCCCcccccccccC----ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVG----EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
+..|+||++.|..+ ..+..++|+|.||..||.+|+..+.+||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 57899999998764 3446789999999999999999899999999988654
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.33 E-value=7.6e-13 Score=100.07 Aligned_cols=50 Identities=24% Similarity=0.538 Sum_probs=42.7
Q ss_pred cCCCCcccccccccCc---------------eeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGE---------------VAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
++..|+||++.|.... .+..++|+|.||..||.+||..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678999999987541 2566899999999999999999999999999764
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.6e-13 Score=92.91 Aligned_cols=49 Identities=33% Similarity=0.866 Sum_probs=43.1
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
....|+||++.+.. ..++|+|.||..||..|+..+.+||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 45799999999875 56899999999999999998899999999886544
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=91.30 Aligned_cols=51 Identities=20% Similarity=0.396 Sum_probs=42.8
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
++..|+||++.|..+ +..++|+|.||..||..|+..+..||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 357899999998764 333499999999999999988899999999886544
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.28 E-value=1.4e-12 Score=89.80 Aligned_cols=49 Identities=31% Similarity=0.836 Sum_probs=42.3
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
.+..|+||++.+..+ ...++|+|.||..|+..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 357899999998753 4568999999999999999988999999998753
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=91.40 Aligned_cols=47 Identities=30% Similarity=0.692 Sum_probs=41.3
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
++..|+||++.|..+ +.++|+|.||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 457899999998654 45799999999999999998899999999875
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3e-12 Score=92.24 Aligned_cols=52 Identities=25% Similarity=0.618 Sum_probs=43.8
Q ss_pred cCCCCcccccccccCce-eeeeCCCCcccHHHHHHHHhcC---CCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKWLGIN---GSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~wl~~~---~tCP~CR~~~~~~ 171 (232)
+...|+||++.|..... .+.++|+|.||..||..|+..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45789999999987543 5678999999999999999765 7899999987654
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-12 Score=91.95 Aligned_cols=52 Identities=25% Similarity=0.678 Sum_probs=43.1
Q ss_pred cCCCCcccccccccCceeeeeCCC-----CcccHHHHHHHHhcC--CCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCK-----HKFHANCIEKWLGIN--GSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~-----H~fh~~Ci~~wl~~~--~tCP~CR~~~~~~~ 172 (232)
++..|.||+++|..+..+ ++||+ |.||..||.+||..+ .+||+||+.+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 457899999999766554 58996 999999999999765 48999999886544
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=2.9e-12 Score=100.72 Aligned_cols=49 Identities=27% Similarity=0.758 Sum_probs=42.6
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
++..|+||++.|..+ +.++|||.||..||..|+..+.+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 356899999998754 4589999999999999999999999999988644
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.1e-12 Score=90.70 Aligned_cols=47 Identities=17% Similarity=0.498 Sum_probs=41.5
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
....|+||++.|..+ ..++|+|.||..||..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 457899999999764 35899999999999999988889999999885
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.2e-12 Score=88.08 Aligned_cols=49 Identities=22% Similarity=0.475 Sum_probs=40.8
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh---cCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG---INGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~---~~~tCP~CR~~~~~~ 171 (232)
++..|+||++.|..+ ..++|+|.||..||..|+. ....||+||..+...
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 457999999998754 4479999999999999996 455899999988654
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=6.3e-12 Score=88.40 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=40.3
Q ss_pred cCCCCcccccccccCceeeeeC-CCCcccHHHHHHHHhcC--CCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIN--GSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~--~tCP~CR~~~~~ 170 (232)
.+..|+||++.|..+ +.++ |+|.||..||..|+..+ .+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 357899999999865 3388 99999999999999755 689999997543
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.7e-12 Score=86.12 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=41.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHH-hcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWL-GINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl-~~~~tCP~CR~~~~~~ 171 (232)
++..|+||++.+..+.. ++|+|.||..||..|+ .....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 35789999999976644 7999999999999999 4567899999987654
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.20 E-value=1.5e-12 Score=100.03 Aligned_cols=50 Identities=24% Similarity=0.538 Sum_probs=1.0
Q ss_pred cCCCCcccccccccCc---------------eeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGE---------------VAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
.++.|+||++.|.... .+..++|+|.||..||.+||..+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3579999999997531 2233589999999999999999999999999764
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.19 E-value=5.8e-12 Score=93.78 Aligned_cols=52 Identities=27% Similarity=0.602 Sum_probs=42.8
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC-CCCCCcCcccCCCc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN-GSCPVCRYKMPVEE 172 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~tCP~CR~~~~~~~ 172 (232)
.++..|+||++.|..+ +..++|||.||..||..|+... .+||+||..+....
T Consensus 20 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 3467999999999753 3338999999999999999877 69999999885433
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=1.4e-11 Score=87.18 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=42.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-CCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~~~~ 171 (232)
.+..|+||++.|..+ +.++|||.||..||..|+.. +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 467999999999765 34799999999999999976 77899999988654
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=1.8e-11 Score=87.20 Aligned_cols=49 Identities=33% Similarity=0.674 Sum_probs=41.6
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc------CCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI------NGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~------~~tCP~CR~~~~~~ 171 (232)
++..|+||++.|..+. .++|+|.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3579999999987653 5899999999999999976 66899999988653
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.15 E-value=1.7e-11 Score=94.39 Aligned_cols=53 Identities=25% Similarity=0.591 Sum_probs=45.3
Q ss_pred cCCCCcccccccccC----ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVG----EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
++..|+||++.|..+ ..++.++|||.||..||.+|++.+.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 357899999999765 34467899999999999999999999999999886544
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=86.82 Aligned_cols=49 Identities=31% Similarity=0.601 Sum_probs=41.6
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc------CCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI------NGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~------~~tCP~CR~~~~~~ 171 (232)
+...|+||++.|..+. .++|+|.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3579999999997653 3799999999999999976 67899999988653
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=7.6e-12 Score=88.44 Aligned_cols=49 Identities=29% Similarity=0.529 Sum_probs=41.4
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-------CCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-------NGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-------~~tCP~CR~~~~~~ 171 (232)
++..|+||++.|..+. .++|+|.||..||..|+.. ...||+||..+...
T Consensus 11 ~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3578999999997653 3899999999999999976 56899999988653
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.14 E-value=1.8e-11 Score=92.05 Aligned_cols=51 Identities=24% Similarity=0.552 Sum_probs=43.2
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
..+..|+||++.|..+ +..++|||.||..||..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4568999999999764 33349999999999999999889999999988754
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=90.82 Aligned_cols=50 Identities=24% Similarity=0.587 Sum_probs=42.2
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
.+...|+||++.|..+ +..++|||.||..||..|+..+.+||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3457999999999764 2234899999999999999988999999998865
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=3.4e-11 Score=85.24 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=43.3
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC--CCCCCcCcccCCCccc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN--GSCPVCRYKMPVEEEE 174 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~--~tCP~CR~~~~~~~~~ 174 (232)
..+|+||++.|..+.. ...|+|.||..||.+||+.+ .+||+||..+..+..+
T Consensus 15 i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 15 VKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 4789999999986543 23799999999999999877 7999999988765544
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=3.5e-11 Score=82.24 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=41.0
Q ss_pred CCCCccccc-ccccCcee-eeeCCCCcccHHHHHHHHhc-CCCCCCcCcccCCC
Q 026833 121 GGECVVCLE-EYEVGEVA-REMPCKHKFHANCIEKWLGI-NGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e-~~~~~~~~-~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~~~~ 171 (232)
+..|+||++ .|..+... ..++|||.||..||..|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 77766432 45789999999999999754 46899999988543
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.7e-11 Score=81.53 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=35.9
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh---cCCCCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG---INGSCPVC 164 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~---~~~tCP~C 164 (232)
++..|+||++.|..+ +.++|+|.||..||..|++ ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 467999999998865 3479999999999999997 45689998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=3.1e-11 Score=92.97 Aligned_cols=49 Identities=24% Similarity=0.571 Sum_probs=41.3
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC-CCCCcCcccCC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING-SCPVCRYKMPV 170 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-tCP~CR~~~~~ 170 (232)
.++..|+||++.|..+ +.++|||.||..||..|+..+. +||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3457999999999865 3479999999999999997544 89999998865
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.09 E-value=4.1e-11 Score=87.32 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=39.8
Q ss_pred cCCCCcccccccccCceeeeeC-CCCcccHHHHHHHHhcC--CCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIN--GSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~--~tCP~CR~~~~ 169 (232)
++..|+||++.|..+ +.++ |||.||..||..|+... ..||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 467999999999865 3489 99999999999999643 58999999873
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=6.5e-11 Score=89.01 Aligned_cols=50 Identities=28% Similarity=0.564 Sum_probs=41.7
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC---CCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING---SCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~---tCP~CR~~~~~~~ 172 (232)
....|+||++.|..+.. ++|||.||..||..|+..+. +||+||..+....
T Consensus 20 ~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKEPVS---TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSSCCB---CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcCeEE---CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 35789999999876533 79999999999999997653 8999999886544
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.4e-11 Score=78.68 Aligned_cols=42 Identities=36% Similarity=0.865 Sum_probs=35.5
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh---cCCCCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG---INGSCPVC 164 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~---~~~tCP~C 164 (232)
+...|+||++.|..+. .++|+|.||..||..|+. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3578999999998753 389999999999999953 56789998
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.04 E-value=1e-10 Score=94.28 Aligned_cols=48 Identities=33% Similarity=0.660 Sum_probs=40.7
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-CCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~~~ 170 (232)
...|+||++.|..+ +..++|||.||..||..|+.. ...||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 46899999999864 333599999999999999986 7789999998854
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=7e-11 Score=90.86 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=44.0
Q ss_pred cCCCCcccccccccC----ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVG----EVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
....|+||++.|..+ .....++|+|.||..||.+|++.+.+||+||..+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 467899999998764 2346689999999999999999999999999988643
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.03 E-value=9.1e-11 Score=93.71 Aligned_cols=50 Identities=24% Similarity=0.482 Sum_probs=42.3
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC-CCCCcCcccCCC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING-SCPVCRYKMPVE 171 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-tCP~CR~~~~~~ 171 (232)
.+...|+||++.|..+ ..++|+|.||..||..|+.... +||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3457999999998765 3389999999999999997654 899999998765
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.01 E-value=1.7e-10 Score=82.34 Aligned_cols=55 Identities=25% Similarity=0.495 Sum_probs=41.0
Q ss_pred cCCCCcccccccccCc-eeeeeCCCCcccHHHHHHHHh-cCCCCCCcCcccCCCccc
Q 026833 120 LGGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLG-INGSCPVCRYKMPVEEEE 174 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~CR~~~~~~~~~ 174 (232)
++..|+||++.+.... ....++|||.||..|+..|+. ....||+||+.+......
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 4679999999885432 222234999999999999874 456899999988765443
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.99 E-value=1.2e-10 Score=89.06 Aligned_cols=49 Identities=31% Similarity=0.571 Sum_probs=41.4
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC-CCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING-SCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-tCP~CR~~~~~~ 171 (232)
++..|+||++.|..+ +.++|||.||..||..|+.... +||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 357899999998765 3479999999999999997655 999999988654
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=4.8e-11 Score=90.61 Aligned_cols=47 Identities=23% Similarity=0.637 Sum_probs=40.1
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-CCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~~~ 170 (232)
+..|+||++.|..+ +.++|||.||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 57899999998765 34799999999999999965 5689999998753
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.97 E-value=2.9e-10 Score=82.25 Aligned_cols=49 Identities=10% Similarity=-0.080 Sum_probs=42.8
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
++..|+||++.|..+. +++|||.|++.||..|+..+.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCCe---ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4679999999998763 488999999999999998888999999988643
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.96 E-value=1.9e-10 Score=87.35 Aligned_cols=51 Identities=29% Similarity=0.578 Sum_probs=42.5
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-CCCCCCcCcccCCCc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKMPVEE 172 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~~~~~ 172 (232)
.++..|+||++.|..+ ..++|||.||..||..|+.. ..+||+||..+...+
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 3457999999998764 33899999999999999976 678999999886544
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.95 E-value=3.5e-10 Score=84.40 Aligned_cols=50 Identities=10% Similarity=-0.100 Sum_probs=43.6
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
+...|+||++.|.++.. ++|||.|++.||..|+..+.+||+||.++....
T Consensus 28 ~~~~CpI~~~~m~dPV~---~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVR---LPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSSEEE---ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccCCeE---CCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 46799999999987643 889999999999999988889999999887543
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.93 E-value=4.8e-10 Score=83.36 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=43.5
Q ss_pred cCCCCcccccccccCceeeeeCCC-CcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCK-HKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
++..|+||++.|.++. +++|| |.|++.||..|+..+.+||+||..+....
T Consensus 21 ~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 3579999999998764 38999 99999999999988889999999887543
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=2.5e-10 Score=76.07 Aligned_cols=47 Identities=26% Similarity=0.624 Sum_probs=38.9
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
+...|+||++.|..+ +.++|+|.||..||..| ...||+||+.+....
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 467899999999875 44899999999999774 568999999876543
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=4.4e-10 Score=85.67 Aligned_cols=48 Identities=25% Similarity=0.546 Sum_probs=40.6
Q ss_pred hcCCCCcccccccccCceeeee-CCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 119 ALGGECVVCLEEYEVGEVAREM-PCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
.+...|+||++.|..+. .+ +|||.||..||..|+. ..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 34689999999997653 36 8999999999999997 7899999988543
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=7.2e-10 Score=75.93 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=39.3
Q ss_pred cCCCCcccccccccCceeeee--CCCCc-ccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREM--PCKHK-FHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~l--pC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
++..|.||++.+... ..+ ||||. ||..|+..|+..+..||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 356899999986543 334 99999 899999999988889999998773
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.85 E-value=4.9e-10 Score=88.57 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=41.1
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC-CCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING-SCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-tCP~CR~~~~~~ 171 (232)
.+..|+||++.|..+ +.++|||.||..||..|+.... +||+||.++...
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 457999999999876 3379999999999999997654 899999976443
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=1.8e-09 Score=98.32 Aligned_cols=47 Identities=26% Similarity=0.666 Sum_probs=40.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHh-cCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG-INGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~CR~~~~~ 170 (232)
...|+||++.+.. .+.+||||.||..|+..|+. ...+||+||..+..
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3689999999864 45699999999999999998 67899999998754
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.82 E-value=1.5e-09 Score=74.03 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=39.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
....|.||++.+... .+..+||||. ||..|+..|.+....||+||..+.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 357899999986542 1222499998 999999999988889999999873
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.79 E-value=1.3e-09 Score=76.71 Aligned_cols=43 Identities=23% Similarity=0.569 Sum_probs=36.8
Q ss_pred cCCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
++..|+||++.+.. ...+||+|. ||..|+..| ..||+||..+.
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45789999998765 455899999 999999998 78999998774
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=4e-09 Score=77.51 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=38.9
Q ss_pred cCCCCcccccccccCceeeeeC-CCCcccHHHHHHHHhcC------CCCCC--cCcc-cCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIN------GSCPV--CRYK-MPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~------~tCP~--CR~~-~~~ 170 (232)
.+..|+||++.|..+. .++ |||+|+..||..|+..+ .+||+ |+.. +..
T Consensus 6 ~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3578999999998753 375 99999999999999653 48999 9865 543
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=4.5e-09 Score=90.26 Aligned_cols=49 Identities=18% Similarity=0.036 Sum_probs=41.0
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-CCCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-NGSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~tCP~CR~~~~~~ 171 (232)
....|+||++.|..+. +++|||+||..||..|+.. ..+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 4578999999998763 4899999999999999975 44599999988543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.66 E-value=5.2e-09 Score=84.54 Aligned_cols=49 Identities=29% Similarity=0.517 Sum_probs=41.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC-CCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN-GSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~tCP~CR~~~~~~ 171 (232)
+...|+||++.|..+ +.++|||.||..||..|+... .+||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 357999999999865 337999999999999999654 4999999988654
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.2e-08 Score=71.77 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=35.3
Q ss_pred CCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
+..|+||++.+... ..+||+|. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 46899999997654 45899999 99999964 3789999998754
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.62 E-value=6.7e-09 Score=92.75 Aligned_cols=52 Identities=29% Similarity=0.660 Sum_probs=39.5
Q ss_pred hcCCCCcccccccccCce-----eeeeCCCCcccHHHHHHHHhcC-----------CCCCCcCcccCC
Q 026833 119 ALGGECVVCLEEYEVGEV-----AREMPCKHKFHANCIEKWLGIN-----------GSCPVCRYKMPV 170 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~-----~~~lpC~H~fh~~Ci~~wl~~~-----------~tCP~CR~~~~~ 170 (232)
+...+|+||++.+..... +.-.+|+|.||..||.+||+.. ++||+||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 346799999999876221 1124699999999999999642 469999998753
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.55 E-value=2.6e-08 Score=81.75 Aligned_cols=49 Identities=16% Similarity=0.003 Sum_probs=41.0
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC-CCCCCcCcccCCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN-GSCPVCRYKMPVE 171 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~tCP~CR~~~~~~ 171 (232)
....|+||++.|..+. +++|||+|+..||..|+..+ .+||+||.++...
T Consensus 105 ~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3578999999998763 47999999999999999764 4799999988653
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=3.3e-08 Score=72.27 Aligned_cols=47 Identities=28% Similarity=0.718 Sum_probs=38.6
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc--------CCCCCC--cCcc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI--------NGSCPV--CRYK 167 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--------~~tCP~--CR~~ 167 (232)
...|+||++.+..+..+...+|+|.||..||..++.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5689999999987665555579999999999999853 237999 9987
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.54 E-value=4.2e-08 Score=66.41 Aligned_cols=48 Identities=29% Similarity=0.612 Sum_probs=36.9
Q ss_pred cCCCCcccccccccCceeeeeCCC--C---cccHHHHHHHHhc--CCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCK--H---KFHANCIEKWLGI--NGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~--H---~fh~~Ci~~wl~~--~~tCP~CR~~~~~ 170 (232)
+...|.||++.... . .++||. + .||..||.+|+.. +.+||+|++.+..
T Consensus 5 ~~~~CrIC~~~~~~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGN--E-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSC--C-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCC--c-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46789999998432 2 258855 4 8999999999954 5789999987753
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=2.9e-08 Score=70.68 Aligned_cols=44 Identities=34% Similarity=0.665 Sum_probs=36.1
Q ss_pred cCCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
++..|+||++.+.. ...+||||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 35689999998654 566899999 999999876 399999997743
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.45 E-value=5.8e-08 Score=83.87 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=41.6
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC--CCCCC--cCcccCCCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN--GSCPV--CRYKMPVEE 172 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~--~tCP~--CR~~~~~~~ 172 (232)
....|+||++.|..+ ++...|||.||+.||..|+..+ .+||+ ||+.+...+
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 457999999999876 4445899999999999999754 47999 999775543
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=9.5e-08 Score=66.09 Aligned_cols=44 Identities=27% Similarity=0.649 Sum_probs=36.0
Q ss_pred cCCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
++..|.||++.+.. +..+||+|. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 35789999998643 566899999 99999974 4789999997754
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=7.9e-08 Score=65.19 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=41.2
Q ss_pred CCCCcccccccccCceeeee-CCCCcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 121 GGECVVCLEEYEVGEVAREM-PCKHKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
...|+||++.|.++ .++ +|||+|.+.||.+|+..+.+||+++.++...+
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 36799999999865 336 89999999999999988889999999885443
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.36 E-value=8.3e-08 Score=86.28 Aligned_cols=44 Identities=25% Similarity=0.621 Sum_probs=37.4
Q ss_pred hcCCCCcccccccccCceeeeeCCCCc-ccHHHHHHHHhcCCCCCCcCcccC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHK-FHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
.++..|+||++.+.. ...+||||. ||..|+..| ..||+||..+.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 456899999999865 455899999 999999988 68999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.98 E-value=4.5e-06 Score=61.65 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=36.7
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHh-cCCCCCCcCcccCC
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG-INGSCPVCRYKMPV 170 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~tCP~CR~~~~~ 170 (232)
.|.+|--.+. ...+.+||+|+||..|+..|.+ ..++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4778876654 3457799999999999999985 46899999987743
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.90 E-value=6.4e-06 Score=70.33 Aligned_cols=52 Identities=25% Similarity=0.528 Sum_probs=41.7
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC--CCCCcCcccCCCccc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING--SCPVCRYKMPVEEEE 174 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~--tCP~CR~~~~~~~~~ 174 (232)
-..|.||.+.+..+.. .-.|+|.||..|+..|++.+. .||.|+..++....+
T Consensus 180 i~~C~iC~~iv~~g~~--C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSCEE--CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCCcc--cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 5689999999876643 234999999999999997654 899999988766443
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.41 E-value=0.0013 Score=47.90 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=38.7
Q ss_pred CCCcccccccccCceeeeeCCC-CcccHHHHHHHHhcCCCCCCcCcccCCCcc
Q 026833 122 GECVVCLEEYEVGEVAREMPCK-HKFHANCIEKWLGINGSCPVCRYKMPVEEE 173 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~~ 173 (232)
..|..|+-..+. .+.|. |.+|..|+.-+|.....||+|+++++.+-.
T Consensus 29 ~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 29 QFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 589999987542 24464 999999999999999999999999987653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.90 E-value=0.012 Score=42.62 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=27.4
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHH-HH
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEK-WL 155 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~-wl 155 (232)
++..|.||.+.+........+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 3578999998754444444588999999999998 43
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.28 E-value=0.035 Score=37.67 Aligned_cols=45 Identities=27% Similarity=0.438 Sum_probs=32.1
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCC----CCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGING----SCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~----tCP~CR~~ 167 (232)
.+..|.||.+. ++.+.--.|...||..|+.+.|.... .||.|+..
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 35689999754 33333334899999999998885432 69999754
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.41 E-value=0.17 Score=36.02 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=22.7
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHH
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKW 154 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~w 154 (232)
.+..|.||--. ......-.--|+.+||..|+.+.
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccc
Confidence 46799999633 23333111228899999999997
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.22 E-value=0.24 Score=32.78 Aligned_cols=44 Identities=27% Similarity=0.599 Sum_probs=30.6
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc----CCCCCCcCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI----NGSCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~tCP~CR~ 166 (232)
.+..|.||... +..+..-.|...||..|+.+-+.. .-.||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 46789999874 333333358899999999875532 226999965
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.85 E-value=0.13 Score=35.23 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=32.9
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc----CCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI----NGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~tCP~CR~~~~ 169 (232)
+...|.||.........+..-.|...||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44679999887542223222348999999999765432 336999976553
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.48 E-value=0.083 Score=35.16 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=31.7
Q ss_pred cCCCCcccccccccCcee-eeeCCCCcccHHHHHHHHh-----cCCCCCCcCc
Q 026833 120 LGGECVVCLEEYEVGEVA-REMPCKHKFHANCIEKWLG-----INGSCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~-~~lpC~H~fh~~Ci~~wl~-----~~~tCP~CR~ 166 (232)
++..|+||...+.....+ ..-.|...||..|+.--.. ....||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 457899999887544333 2335899999999854321 2347999964
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.19 E-value=0.24 Score=35.48 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=32.8
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCcccC
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYKMP 169 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~~~ 169 (232)
..+..|.||... +..+..-.|...||..|+.+=|... -.||.|+..-.
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 346789999865 3333333488999999998766432 26999986433
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.25 E-value=0.39 Score=30.30 Aligned_cols=44 Identities=27% Similarity=0.514 Sum_probs=28.3
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRY 166 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~ 166 (232)
.|.||...-..+..+.--.|...||..|+.+=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898753323333333488999999997644322 25999964
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=84.73 E-value=0.36 Score=39.17 Aligned_cols=49 Identities=22% Similarity=0.536 Sum_probs=33.8
Q ss_pred CCCCcccccccccCc----eeeeeCCCCcccHHHHHH------HHh-----cCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGE----VAREMPCKHKFHANCIEK------WLG-----INGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~----~~~~lpC~H~fh~~Ci~~------wl~-----~~~tCP~CR~~~~ 169 (232)
+..|+||...|...+ .+..-.|...||..|+.- -+. ....||.|+..-+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 357999999987765 223334999999999832 111 1568999987544
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.93 E-value=0.2 Score=41.17 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=31.7
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCccc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~~ 168 (232)
.+..|.+|... +..+..=.|...||..|+.+.+... -.||.|+...
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 46789999854 3322223488999999998776432 2699998644
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.17 E-value=0.36 Score=38.78 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=32.0
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCccc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~~ 168 (232)
.+..|.||... +..+..-.|...||..|+.+-+... -.||.|+...
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35789999854 4433333488999999998766432 2699998644
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.43 E-value=0.29 Score=32.35 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=30.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~ 167 (232)
.+..|.||... +..+..-.|...||..|+.+-|... -.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 46789999863 3332223488999999998655322 259999754
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=82.29 E-value=0.099 Score=34.45 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=31.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCccc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~~ 168 (232)
.+..|.||... +..+..-.|...||..|+.+-|... -.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45789999874 3333333588999999998655322 2599996543
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.19 E-value=0.5 Score=34.25 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhc---CCCCCCcCc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI---NGSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~tCP~CR~ 166 (232)
..| ||......+..+..-.|...||..|+..-+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88777655544444459999999998653322 237999974
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.98 E-value=0.16 Score=32.96 Aligned_cols=43 Identities=26% Similarity=0.599 Sum_probs=29.0
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCR 165 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR 165 (232)
.+..|.||... +..+..-.|...||..|+.+-|... -.||.|+
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 46789999874 3333333588999999998655322 2488774
No 89
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=78.18 E-value=1.6 Score=27.62 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=27.8
Q ss_pred CCcccccccccCceeee-e-CCCCcccHHHHHHHH----hcCCCCCCcC
Q 026833 123 ECVVCLEEYEVGEVARE-M-PCKHKFHANCIEKWL----GINGSCPVCR 165 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~-l-pC~H~fh~~Ci~~wl----~~~~tCP~CR 165 (232)
.|.||...+..+..++. - .|...||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57789888754443332 3 488899999974221 2456799885
No 90
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.09 E-value=1.6 Score=39.17 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=34.7
Q ss_pred CCCCcccccccccCceeeeeCCCCc--ccHHHHHHHHhcC--CCCCCcCcccCCCccc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHK--FHANCIEKWLGIN--GSCPVCRYKMPVEEEE 174 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~--fh~~Ci~~wl~~~--~tCP~CR~~~~~~~~~ 174 (232)
...|+|-+..+..+ ++...|.|. |-..-+..+.... -.||+|.+.+...+-.
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 46899988888765 566789998 4443344433333 3699999887655543
No 91
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.99 E-value=1.2 Score=44.70 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=41.4
Q ss_pred CCCCcccccccccCceeeeeCCC-CcccHHHHHHHHhcCCCCCCcCcccCCCc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCK-HKFHANCIEKWLGINGSCPVCRYKMPVEE 172 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~tCP~CR~~~~~~~ 172 (232)
...|+|-++.|.++. ++|-| +.|-+.+|.+|+..+.+||.=|.++...+
T Consensus 891 ~F~cPIs~~lM~DPV---ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 891 EFLDPLMYTIMKDPV---ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HhCCcchhhHHhCCe---EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 457999999998763 48887 68999999999988999999999886543
No 92
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.68 E-value=1 Score=32.31 Aligned_cols=44 Identities=27% Similarity=0.530 Sum_probs=26.7
Q ss_pred cCCCCcccccccccCceeeeeC--CC-CcccHHHHHHHHhc----CCCCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREMP--CK-HKFHANCIEKWLGI----NGSCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lp--C~-H~fh~~Ci~~wl~~----~~tCP~CR~~ 167 (232)
+...| ||..... +..+..=. |. ..||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34567 9988643 32222122 55 689999996 322 3369999764
No 93
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=76.60 E-value=1.8 Score=38.61 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=34.5
Q ss_pred CCCCcccccccccCceeeeeCCCCc--ccHHHHHHHHhcC--CCCCCcCcccCCCcc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHK--FHANCIEKWLGIN--GSCPVCRYKMPVEEE 173 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~--fh~~Ci~~wl~~~--~tCP~CR~~~~~~~~ 173 (232)
...|+|-+..+..+ ++...|.|. |-..-+..+.... -.||+|.+.+..++-
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 35799988888765 556789998 5444444444333 369999988765543
No 94
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=76.02 E-value=1.4 Score=29.03 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=29.6
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVC 164 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~C 164 (232)
..|..|...|......+.-.|++.||.+|=.---..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998543333344599999999954322444579988
No 95
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.87 E-value=0.78 Score=31.41 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=30.0
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHH---------hcCCCCCCcCcc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWL---------GINGSCPVCRYK 167 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl---------~~~~tCP~CR~~ 167 (232)
...| ||...+.....+..-.|...||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3566 898876533333334599999999984211 245689999753
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.23 E-value=0.6 Score=33.23 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=31.2
Q ss_pred cCCCCccccccc-ccCceee-eeCCCCcccHHHHHHHHh--cCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEY-EVGEVAR-EMPCKHKFHANCIEKWLG--INGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~-~~~~~~~-~lpC~H~fh~~Ci~~wl~--~~~tCP~CR~~~~ 169 (232)
++..|.||...- .....+. .-.|.-.||..|+..-+. ..-.||.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 457899998753 1122222 224889999999975432 1226999976543
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.21 E-value=1.6 Score=30.07 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=30.0
Q ss_pred CCCCcccccccccCc-eeeeeCCCCcccHHHHHHHHh-----cCCCCCCcCccc
Q 026833 121 GGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLG-----INGSCPVCRYKM 168 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~-----~~~tCP~CR~~~ 168 (232)
...| ||...+.... .+..-.|...||..|+.--.. ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4456 9988875333 323334999999999842211 345799998643
No 98
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=73.74 E-value=2.3 Score=28.88 Aligned_cols=44 Identities=27% Similarity=0.530 Sum_probs=26.8
Q ss_pred cCCCCcccccccccCceeeeeC--CC-CcccHHHHHHHHhc----CCCCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREMP--CK-HKFHANCIEKWLGI----NGSCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lp--C~-H~fh~~Ci~~wl~~----~~tCP~CR~~ 167 (232)
+...| ||..... +..+..=. |. ..||..|+. |.. .-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8988643 33222123 55 689999996 322 2369999754
No 99
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.61 E-value=0.93 Score=33.24 Aligned_cols=46 Identities=22% Similarity=0.547 Sum_probs=29.7
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhc----CCCCCCcC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI----NGSCPVCR 165 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~tCP~CR 165 (232)
.+..|.||...=+....+.--.|...||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46789999876322222333459999999999877632 12466553
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.83 E-value=4.1 Score=31.53 Aligned_cols=45 Identities=27% Similarity=0.555 Sum_probs=31.9
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh---------c--CCCCCCcCc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG---------I--NGSCPVCRY 166 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~---------~--~~tCP~CR~ 166 (232)
..+..|.||.+- ++.+..-.|-..||..||.+-|. . .-.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346899999875 44433345889999999997652 1 226999974
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.66 E-value=0.87 Score=36.87 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=30.4
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCcc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYK 167 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~ 167 (232)
+..|.+|... +..+..-.|...||..|+.+=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999864 3333334588999999997655322 269999865
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=71.54 E-value=2.8 Score=29.46 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCCCcccccccccCceeeeeC--CCCcccHHHHHHHHhcC-----CCCCCc
Q 026833 121 GGECVVCLEEYEVGEVAREMP--CKHKFHANCIEKWLGIN-----GSCPVC 164 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp--C~H~fh~~Ci~~wl~~~-----~tCP~C 164 (232)
...|.+|.+.++...- +.-| =.|.||..|-+..++.+ -.||-=
T Consensus 15 ~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 15 PLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp SCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred eeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 4789999999986543 2223 36999999999988642 246655
No 103
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.37 E-value=3 Score=27.77 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=23.1
Q ss_pred cCCCCcccccccccCceeee-e-CCCCcccHHHH
Q 026833 120 LGGECVVCLEEYEVGEVARE-M-PCKHKFHANCI 151 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~-l-pC~H~fh~~Ci 151 (232)
....|.+|...+.....++. - .|...||..|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 45689999998765544332 3 68999999998
No 104
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=70.22 E-value=0.53 Score=31.49 Aligned_cols=44 Identities=30% Similarity=0.537 Sum_probs=29.8
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~ 166 (232)
.+..|.||... +..+..-.|...||..|+.+-|... -.||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 46789999864 3333333488999999998655322 25999964
No 105
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.14 E-value=1.2 Score=30.68 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=29.8
Q ss_pred cCCCCcccccccccCceeeee--CCCCcccHHHHHHHHh---------cCCCCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREM--PCKHKFHANCIEKWLG---------INGSCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~wl~---------~~~tCP~CR~~ 167 (232)
....| ||......+..+..- .|...||..|+.---. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34567 898874444333333 5999999999843211 24579999753
No 106
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.10 E-value=0.53 Score=33.77 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=31.2
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~ 167 (232)
++..|.||...-.....+..-.|...||..|+.+=|... -.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 356899998864332233333488999999997544322 259999653
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.77 E-value=0.82 Score=32.45 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=32.8
Q ss_pred hcCCCCccccccccc--CceeeeeCCCCcccHHHHHHHHhc--------CCCCCCcCccc
Q 026833 119 ALGGECVVCLEEYEV--GEVAREMPCKHKFHANCIEKWLGI--------NGSCPVCRYKM 168 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~--~~~~~~lpC~H~fh~~Ci~~wl~~--------~~tCP~CR~~~ 168 (232)
+.+..|.||...-.. ...+..=.|...||..|+.+-|.. .-.|+.|+...
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 356799999986332 222222248999999999875531 22699997644
No 108
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=66.19 E-value=1.3 Score=30.14 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=29.1
Q ss_pred cCCCCccccccc--ccCceeeeeCCCCcccHHHHHHHHh--cCCCCCCcCc
Q 026833 120 LGGECVVCLEEY--EVGEVAREMPCKHKFHANCIEKWLG--INGSCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~--~~~~~~~~lpC~H~fh~~Ci~~wl~--~~~tCP~CR~ 166 (232)
.+..|.||...- ..+..+..-.|.-.||..|+..-.. ..=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 467899998763 2222222234889999999975331 1225888854
No 109
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.68 E-value=1.2 Score=30.13 Aligned_cols=44 Identities=25% Similarity=0.529 Sum_probs=25.8
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhc-----CCCCCCcCc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-----NGSCPVCRY 166 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-----~~tCP~CR~ 166 (232)
.|.||...-..+..+.--.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45566643222222222248899999999865532 226888864
No 110
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.26 E-value=1.2 Score=30.94 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=25.2
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcC-----CCCCCcCc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN-----GSCPVCRY 166 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-----~tCP~CR~ 166 (232)
.|.||...-.....+.--.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355555443222222222488999999998766321 26888874
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.04 E-value=7.2 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCCccccccc------ccCceeeeeCCCCcccHHHHH
Q 026833 121 GGECVVCLEEY------EVGEVAREMPCKHKFHANCIE 152 (232)
Q Consensus 121 ~~~C~IC~e~~------~~~~~~~~lpC~H~fh~~Ci~ 152 (232)
...|.+|+..- ..++-+.-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 46899998752 111233334599999999995
No 112
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=63.69 E-value=1 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=28.8
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHh---cCCCCCCcCc
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLG---INGSCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~---~~~tCP~CR~ 166 (232)
+...| ||...+.....+..-.|...||..|+.--.. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 35678 9988765322333345899999999853221 2346888853
No 113
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=63.20 E-value=1.1 Score=35.26 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=29.8
Q ss_pred cCCCCcccccccccCc-eeeeeCCCCcccHHHHHHHH-----hcCCCCCCcCc
Q 026833 120 LGGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWL-----GINGSCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl-----~~~~tCP~CR~ 166 (232)
+...| ||........ .+..-.|...||..|+.--. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34578 9988764333 22333589999999984221 12447999975
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.93 E-value=2.3 Score=31.26 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=27.7
Q ss_pred CCccccccc-ccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCc
Q 026833 123 ECVVCLEEY-EVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRY 166 (232)
Q Consensus 123 ~C~IC~e~~-~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~ 166 (232)
.|.||...- ..+..+.--.|...||..|+.+-|... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 677887642 222222223488999999997765432 26999974
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=60.80 E-value=3.4 Score=30.16 Aligned_cols=47 Identities=23% Similarity=0.387 Sum_probs=31.3
Q ss_pred CCCcccccccccCceeeee--CCCCcccHHHHHHHH---h-------cCCCCCCcCccc
Q 026833 122 GECVVCLEEYEVGEVAREM--PCKHKFHANCIEKWL---G-------INGSCPVCRYKM 168 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~wl---~-------~~~tCP~CR~~~ 168 (232)
..|.||...+.....+..- .|...||..|+.--. + ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999987554333332 588999999983211 0 234799997643
No 116
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=58.65 E-value=3.1 Score=27.36 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=31.8
Q ss_pred cCCCCccccccccc--CceeeeeCCCCcccHHHHHHHHh-------cCCCCCCcCccc
Q 026833 120 LGGECVVCLEEYEV--GEVAREMPCKHKFHANCIEKWLG-------INGSCPVCRYKM 168 (232)
Q Consensus 120 ~~~~C~IC~e~~~~--~~~~~~lpC~H~fh~~Ci~~wl~-------~~~tCP~CR~~~ 168 (232)
++..|.||...... ...+..-.|...||..|+.+-+. ..-.|+.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 46789999986433 22322334899999999876442 123688886543
No 117
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=58.15 E-value=1.1 Score=33.78 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCCCcccccccccCc-eeeeeCCCCcccHHHHHHHHhcCCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLGINGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~ 166 (232)
...|.+|...|..-. +-..-.||.+||..|....+.....|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 368999999986543 2233569999999997766555667888844
No 118
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=57.88 E-value=4.7 Score=27.13 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.2
Q ss_pred cCCCCcccccccccCceeeeeCC-CCcccHHHHHHH
Q 026833 120 LGGECVVCLEEYEVGEVAREMPC-KHKFHANCIEKW 154 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC-~H~fh~~Ci~~w 154 (232)
+..-|.||.++ ..++.+.| +-.||..|+...
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 45789999987 34677888 789999997664
No 119
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=57.55 E-value=0.88 Score=30.87 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=29.2
Q ss_pred CCCCcccccccccCc-eeeeeCCCCcccHHHHHHHH----hcCCCCCCcCcc
Q 026833 121 GGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWL----GINGSCPVCRYK 167 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl----~~~~tCP~CR~~ 167 (232)
...| ||......+. .+..-.|...||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4568 7988765443 33333589999999985422 223469999653
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.98 E-value=2.5 Score=29.19 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=28.0
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-----CCCCCCcCc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-----NGSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-----~~tCP~CR~ 166 (232)
..|.||...-..+..+.--.|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888764323333333348899999999865532 225888863
No 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.27 E-value=7.2 Score=27.49 Aligned_cols=35 Identities=14% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKWL 155 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~wl 155 (232)
...|.+|...|..-.+ -..-.||++||..|...++
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4689999999875432 2334599999999976554
No 122
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.39 E-value=12 Score=28.41 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=29.8
Q ss_pred hcCCCCcccccccccCceeeeeCCCCcccHHHHHHHH------hc-----CCCCCCcCc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWL------GI-----NGSCPVCRY 166 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl------~~-----~~tCP~CR~ 166 (232)
..+..|.||.+- ++.+-.=.|-..||..||.+-+ +. .=.|++|+-
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345789999875 3322223488999999999752 11 126999954
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.17 E-value=7.2 Score=29.26 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKW 154 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~w 154 (232)
...|.+|...|....+ -..-.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4689999999875432 223459999999996543
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=52.96 E-value=1.8 Score=31.58 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=26.9
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhc----CCCCCCcCc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI----NGSCPVCRY 166 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~tCP~CR~ 166 (232)
.|.||...-.....+..-.|...||..|+.+-|.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 56777765333223333348999999999765532 225777753
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.75 E-value=7.3 Score=26.88 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=24.4
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKW 154 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~w 154 (232)
...|.+|...|....+ -..-.||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4689999999875432 223459999999997543
No 126
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=52.58 E-value=19 Score=25.61 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=33.6
Q ss_pred CCCCcccccccccCc---ee-eeeCCCCcccHHHHHHHH-hcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGE---VA-REMPCKHKFHANCIEKWL-GINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~---~~-~~lpC~H~fh~~Ci~~wl-~~~~tCP~CR~~~~ 169 (232)
...|.||-+.+.... .. ..--|+--.|+.|+.--. ..+..||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 468999999964332 11 112377778999986544 55678999987664
No 127
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=51.33 E-value=3.3 Score=31.37 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=39.5
Q ss_pred eCCCCcccHHHHHHHHhc-----CCCCCCcCcccCCCcccccchhhhhcccceEEeeecCCCCCCC
Q 026833 140 MPCKHKFHANCIEKWLGI-----NGSCPVCRYKMPVEEEESGNKRDERRREIWVSFSISGGGRRSG 200 (232)
Q Consensus 140 lpC~H~fh~~Ci~~wl~~-----~~tCP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (232)
..|.|.++..++..|-.. ...|+.|+..-..... .........++|+++.++..|+++.
T Consensus 5 ~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~--~~~~~~~~~~Lw~CL~CG~vgCgr~ 68 (126)
T 2i50_A 5 PVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK--AEEETEEKPSVWLCLKCGHQGCGRN 68 (126)
T ss_dssp CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCS--SCTTTCCCCCEEEETTTCCEEECTT
T ss_pred CCCcChhhccccccccccccCCCCCcCcccccccccccc--ccccccccccceeeeeCCccccCCC
Confidence 569999998888777521 2469999764221111 1113334678999999999999764
No 128
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.23 E-value=3.8 Score=34.20 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=25.1
Q ss_pred CCCcccccccccCceeeeeCCCCcccHHHHHHHHhc-----CCCCCCcCc
Q 026833 122 GECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGI-----NGSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-----~~tCP~CR~ 166 (232)
..|.+|...-..+..+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 357788764222222222348899999999865532 125999964
No 129
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.13 E-value=7.3 Score=28.59 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=29.6
Q ss_pred hcCCCCcccccccccCceeeee--CCCCcccHHHHHHHHhcC----CCCCCcCcccCCC
Q 026833 119 ALGGECVVCLEEYEVGEVAREM--PCKHKFHANCIEKWLGIN----GSCPVCRYKMPVE 171 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~wl~~~----~tCP~CR~~~~~~ 171 (232)
..+..|.+|.+. ++.+..- .|-..||..|+. |... -.||.|+..+..+
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 346789999843 3322222 377899999996 4322 2588776555433
No 130
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=51.06 E-value=4 Score=40.43 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=29.4
Q ss_pred eeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC---------cccccchhhhhcccceEEeeecCCCCCCC
Q 026833 139 EMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE---------EEESGNKRDERRREIWVSFSISGGGRRSG 200 (232)
Q Consensus 139 ~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (232)
++.+.+.++..|+..|-. ..||+|++..... ...+.+..+....++|.++.++..||++.
T Consensus 173 i~~~~~~~~~~~~~~w~~--~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~ 241 (854)
T 3ihp_A 173 LLSADSASRKQEVQAWDG--EVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRR 241 (854)
T ss_dssp HTC------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCB
T ss_pred HHhcCCHHHHHHHHhhcC--ccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCcccccc
Confidence 356778899999999963 3478887753221 12245566667889999999999888753
No 131
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.73 E-value=8.4 Score=26.71 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=24.8
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKW 154 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~w 154 (232)
...|.+|...|..-.+ -..-.||.+||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 5689999999875432 223459999999997554
No 132
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.08 E-value=6 Score=26.30 Aligned_cols=38 Identities=21% Similarity=0.533 Sum_probs=19.3
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
.|..|-..+..++.+.. -+..||..|+ .|-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a--~~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS--LGKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE--TTEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE--CCccccCCCC--------CccccCccCCC
Confidence 35666665543333322 2555665553 46666665543
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.91 E-value=9.4 Score=25.69 Aligned_cols=32 Identities=13% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCcccccccccCce-eeeeCCCCcccHHHHHH
Q 026833 122 GECVVCLEEYEVGEV-AREMPCKHKFHANCIEK 153 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~ 153 (232)
..|.+|...|..-.+ -..-.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999875432 22245999999999643
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.61 E-value=7.5 Score=31.78 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=23.7
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEK 153 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~ 153 (232)
+..|.+|...|..-.+ -..-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999865432 22345999999988654
No 135
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.40 E-value=8.6 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.468 Sum_probs=29.3
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
...|..|-..+...+.+. .-+..||..|+ +|..|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 468999999887555443 34678888774 69999888764
No 136
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.89 E-value=9.2 Score=26.45 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEK 153 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~ 153 (232)
...|.+|...|..-.+ -..-.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4689999999865432 22345999999998543
No 137
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.70 E-value=8.2 Score=28.09 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=10.6
Q ss_pred cccHHHHHHHHh
Q 026833 145 KFHANCIEKWLG 156 (232)
Q Consensus 145 ~fh~~Ci~~wl~ 156 (232)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999994
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.61 E-value=9.3 Score=26.84 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKW 154 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~w 154 (232)
...|.+|...|..-.+ -..-.||.+||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4589999999875432 223459999999997543
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.45 E-value=8.5 Score=31.73 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=24.5
Q ss_pred CCCCcccccccccCce-eeeeCCCCcccHHHHHHH
Q 026833 121 GGECVVCLEEYEVGEV-AREMPCKHKFHANCIEKW 154 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~-~~~lpC~H~fh~~Ci~~w 154 (232)
+..|.+|...|..-.+ -..-.||++||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3589999999875432 223459999999997544
No 140
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=45.35 E-value=8.4 Score=27.99 Aligned_cols=12 Identities=50% Similarity=1.154 Sum_probs=10.6
Q ss_pred cccHHHHHHHHh
Q 026833 145 KFHANCIEKWLG 156 (232)
Q Consensus 145 ~fh~~Ci~~wl~ 156 (232)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 141
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.28 E-value=1.5 Score=32.50 Aligned_cols=45 Identities=18% Similarity=0.415 Sum_probs=28.8
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcC----CCCCCcCcc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIN----GSCPVCRYK 167 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~----~tCP~CR~~ 167 (232)
.|.||...-..+..+.--.|...||..|+.+=|... -.||.|+..
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 588887754333343334588999999998644322 258888653
No 142
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=44.28 E-value=1.2 Score=29.87 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=25.8
Q ss_pred CCCcccccccccCceeeee--CCCCcccHHHHHHHH---h-----cCCCCCCcCc
Q 026833 122 GECVVCLEEYEVGEVAREM--PCKHKFHANCIEKWL---G-----INGSCPVCRY 166 (232)
Q Consensus 122 ~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~wl---~-----~~~tCP~CR~ 166 (232)
..| ||......+..+..= .|...||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 797655444332221 388899999973110 0 1346999974
No 143
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=44.25 E-value=5.5 Score=30.29 Aligned_cols=51 Identities=8% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCCcCcccCCCc---------ccccchhhhhcccceEEeeecCCCCCCCC
Q 026833 149 NCIEKWLGINGSCPVCRYKMPVEE---------EESGNKRDERRREIWVSFSISGGGRRSGE 201 (232)
Q Consensus 149 ~Ci~~wl~~~~tCP~CR~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (232)
.|+..|- ...||.|++...... ............++|+++.++..|+++.+
T Consensus 2 ~~~~~W~--~e~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~ 61 (129)
T 2g45_A 2 QEVQAWD--GEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRY 61 (129)
T ss_dssp -----------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBC
T ss_pred hHHHhhc--CCCCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccc
Confidence 4677775 234566655322111 12334455566789999999998887643
No 144
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.84 E-value=3 Score=27.27 Aligned_cols=42 Identities=29% Similarity=0.568 Sum_probs=24.2
Q ss_pred CCCCcccccccccCceeeeeC--CC-CcccHHHHHHHHhc----CCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVAREMP--CK-HKFHANCIEKWLGI----NGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp--C~-H~fh~~Ci~~wl~~----~~tCP~CR~ 166 (232)
...| ||..... +..+..=. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8987632 32221123 54 689999996 422 236888853
No 145
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.50 E-value=3.1 Score=27.13 Aligned_cols=42 Identities=29% Similarity=0.576 Sum_probs=24.8
Q ss_pred CCCCcccccccccCceeeeeC--CC-CcccHHHHHHHHhc----CCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVAREMP--CK-HKFHANCIEKWLGI----NGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp--C~-H~fh~~Ci~~wl~~----~~tCP~CR~ 166 (232)
...| ||..... +..+..=. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 8988642 32222223 65 689999996 322 236888854
No 146
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.45 E-value=3.4 Score=27.09 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCCCcccccccccCc---eeeeeC--CCCcccHHHHHHHHhc
Q 026833 121 GGECVVCLEEYEVGE---VAREMP--CKHKFHANCIEKWLGI 157 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~---~~~~lp--C~H~fh~~Ci~~wl~~ 157 (232)
...||-|...++... .+.... |++.||..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 357888888776544 222223 7888888888888643
No 147
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.36 E-value=11 Score=25.54 Aligned_cols=41 Identities=29% Similarity=0.504 Sum_probs=29.2
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+...+.+. .-+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 468999999876554433 34678898874 688998877543
No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.84 E-value=10 Score=28.94 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=22.4
Q ss_pred CCCCcccccccc--cCceeeeeCCCCcccHHHHH
Q 026833 121 GGECVVCLEEYE--VGEVAREMPCKHKFHANCIE 152 (232)
Q Consensus 121 ~~~C~IC~e~~~--~~~~~~~lpC~H~fh~~Ci~ 152 (232)
+..|.+|...|. .........|.|.+|..|-.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 578999999983 22333445688888887753
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.54 E-value=10 Score=25.72 Aligned_cols=39 Identities=23% Similarity=0.625 Sum_probs=28.3
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+...+.+.. -+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 4689999998765554433 4677888774 7889988775
No 150
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.72 E-value=11 Score=27.38 Aligned_cols=42 Identities=19% Similarity=0.451 Sum_probs=25.7
Q ss_pred cCCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 120 LGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
++..||+|..++.... ++.+|..|-.. +.....||-|..+|.
T Consensus 31 M~~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 4579999998875321 22234444322 244567999988773
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.43 E-value=6.6 Score=34.99 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCcccccccccCc-eeeeeCCCCcccHHHHHHHH
Q 026833 121 GGECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWL 155 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl 155 (232)
...|.+|...|..-. +-..-.||++||..|...++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 468999999986442 22334599999999987654
No 152
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.56 E-value=11 Score=20.95 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=10.5
Q ss_pred CCCCCcCcccCCCc
Q 026833 159 GSCPVCRYKMPVEE 172 (232)
Q Consensus 159 ~tCP~CR~~~~~~~ 172 (232)
..||+|+..++..+
T Consensus 4 ~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 4 FCCPKCQYQAPDMD 17 (28)
T ss_dssp EECTTSSCEESSHH
T ss_pred ccCccccccCcChH
Confidence 46999998877543
No 153
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=36.46 E-value=20 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=18.7
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHH
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANC 150 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~C 150 (232)
...|+.|-..+...+++ ..-+..||..|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred CCcCCccCCEEecceeE--EECCeEecccC
Confidence 35788888886555443 23467888877
No 154
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=36.12 E-value=11 Score=26.68 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=25.9
Q ss_pred hcCCCCcccccccccCceeeeeCCC---CcccHHHHHHHH--hcCCCCCC-cCc
Q 026833 119 ALGGECVVCLEEYEVGEVAREMPCK---HKFHANCIEKWL--GINGSCPV-CRY 166 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~lpC~---H~fh~~Ci~~wl--~~~~tCP~-CR~ 166 (232)
.+...| ||..... +..+..=.|. ..||..|+.--. ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 345667 9987533 3322222344 689999985111 12336999 964
No 155
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=34.95 E-value=24 Score=24.35 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=16.5
Q ss_pred EEeeecCCCCCCCCCCCCCCC
Q 026833 188 VSFSISGGGRRSGENSNQNES 208 (232)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ 208 (232)
+.+++.+..++.+.++|+...
T Consensus 49 v~~h~lg~kC~~C~SyNTr~~ 69 (79)
T 2k2d_A 49 VQFHILGMKCKICESYNTAQA 69 (79)
T ss_dssp EECCTTCCCCTTTSCCCEEES
T ss_pred CCceeecccCcCCCCcCeEec
Confidence 566777888999999998643
No 156
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.75 E-value=26 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.458 Sum_probs=29.0
Q ss_pred cCCCCcccccccccCceeeee--CCCCcccHHHHHHHHhcC----------CCCCCcC
Q 026833 120 LGGECVVCLEEYEVGEVAREM--PCKHKFHANCIEKWLGIN----------GSCPVCR 165 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~wl~~~----------~tCP~CR 165 (232)
.+..|.||-+- ++.+..- .|...||..||..++... =.|=+|.
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 45678888764 3333333 588999999999998321 2688885
No 157
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.15 E-value=26 Score=27.54 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=25.1
Q ss_pred hcCCCCcccccccccCceeeee--CCCCcccHHHHHHHHhc
Q 026833 119 ALGGECVVCLEEYEVGEVAREM--PCKHKFHANCIEKWLGI 157 (232)
Q Consensus 119 ~~~~~C~IC~e~~~~~~~~~~l--pC~H~fh~~Ci~~wl~~ 157 (232)
..+..|.||-+- +..+..- .|...||..||..++..
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 346789999864 2222222 48899999999998843
No 158
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.96 E-value=8.8 Score=28.16 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=15.8
Q ss_pred eCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 140 MPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 140 lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
..||+.|. .-+.....||.|+...
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 56899881 1223456899998654
No 159
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=32.18 E-value=6 Score=26.00 Aligned_cols=44 Identities=27% Similarity=0.472 Sum_probs=24.7
Q ss_pred CCCCcccccccccCceeeeeC--CC-CcccHHHHHHHH--hcCCCCCCcCc
Q 026833 121 GGECVVCLEEYEVGEVAREMP--CK-HKFHANCIEKWL--GINGSCPVCRY 166 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lp--C~-H~fh~~Ci~~wl--~~~~tCP~CR~ 166 (232)
...| ||..... +..+..=. |. ..||..|+.--- ...-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 3456 8988632 32221123 54 799999986211 12236888854
No 160
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.83 E-value=22 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+.. .. +..-+..||..|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cE--EEECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999998764 22 2345788998875 6889988774
No 161
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.64 E-value=22 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.405 Sum_probs=29.9
Q ss_pred cCCCCcccccccc--cCceeeeeCCCCcccHHHHHHHHhcCC--CCCCcCc
Q 026833 120 LGGECVVCLEEYE--VGEVAREMPCKHKFHANCIEKWLGING--SCPVCRY 166 (232)
Q Consensus 120 ~~~~C~IC~e~~~--~~~~~~~lpC~H~fh~~Ci~~wl~~~~--tCP~CR~ 166 (232)
.+..|.+|...|. .+.......|.|.+|..|- .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 3579999999864 3334445669999999996 2332222 3777754
No 162
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.79 E-value=18 Score=26.76 Aligned_cols=39 Identities=15% Similarity=0.432 Sum_probs=28.2
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+.....+ ..-+..||..|+ +|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v--~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLL--YAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEE--EETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEE--EeCCcEEccccc--------CcCcCCCccc
Confidence 36899999987654333 335778898874 7999988874
No 163
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.73 E-value=31 Score=22.87 Aligned_cols=42 Identities=17% Similarity=0.472 Sum_probs=28.7
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+...+.+ +..-+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 35799999887654432 2234678887774 788998887543
No 164
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.51 E-value=54 Score=23.71 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=32.3
Q ss_pred CCCccccccccc-CceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 122 GECVVCLEEYEV-GEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 122 ~~C~IC~e~~~~-~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
..|..|...+.. +.. ....=+..||..|..+.+..+..|-.|...|..
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 468888777752 111 113346678999988877655589999888764
No 165
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=28.91 E-value=7.1 Score=36.19 Aligned_cols=44 Identities=30% Similarity=0.555 Sum_probs=28.0
Q ss_pred CCcccccccccCc-eeeeeCCCCcccHHHHHHHHh-----cCCCCCCcCcc
Q 026833 123 ECVVCLEEYEVGE-VAREMPCKHKFHANCIEKWLG-----INGSCPVCRYK 167 (232)
Q Consensus 123 ~C~IC~e~~~~~~-~~~~lpC~H~fh~~Ci~~wl~-----~~~tCP~CR~~ 167 (232)
.| ||...+.... .+..-.|.-.||..|+.---. ..-.||.|+..
T Consensus 39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 45 8988764333 333335999999999843221 23479999754
No 166
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.50 E-value=35 Score=21.91 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=27.9
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+...+.+. ..-+..||..|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKM-EYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEE-EETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEE-EECcCeecccCC--------cccccCCccCCC
Confidence 357999998877543221 224677887764 688898877543
No 167
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.36 E-value=30 Score=23.52 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+.. .. +..-+..||..|+ .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCCCCC
Confidence 4679999988764 22 2346788898774 688998887543
No 168
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.32 E-value=32 Score=22.21 Aligned_cols=40 Identities=18% Similarity=0.473 Sum_probs=27.5
Q ss_pred CCCCccccccccc--CceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEV--GEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~--~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+.. ...+ +..-+..||..|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 3579999988764 2222 2235788898774 7889988775
No 169
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.61 E-value=32 Score=22.04 Aligned_cols=38 Identities=21% Similarity=0.568 Sum_probs=26.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+.. .. +..-+..||..|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCCC--------ccCCCCCcCC
Confidence 3578999888763 33 2345778887774 6888988774
No 170
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.59 E-value=37 Score=21.80 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=25.8
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+..... .+..-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGA-GVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSC-CEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCce-EEEECCCeEcccCC--------cccccCCcCC
Confidence 3578888887654321 12234677887764 6888888774
No 171
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.14 E-value=20 Score=20.79 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=7.1
Q ss_pred CCCCcCcccCC
Q 026833 160 SCPVCRYKMPV 170 (232)
Q Consensus 160 tCP~CR~~~~~ 170 (232)
.||+|.+.+..
T Consensus 7 iCP~C~~~l~s 17 (34)
T 3mjh_B 7 ICPQCMKSLGS 17 (34)
T ss_dssp ECTTTCCEESS
T ss_pred CCcHHHHHcCC
Confidence 57777766543
No 172
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.06 E-value=18 Score=24.10 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=28.6
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+...+.+ ..-+..||..|+ +|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeE--EeCCcccccccC--------ccCCCCCCCCCC
Confidence 36799999988655543 235677887774 688898887544
No 173
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.63 E-value=28 Score=24.27 Aligned_cols=40 Identities=23% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
+..|++|..++..... +.+|..|-.. +.....||-|..+|
T Consensus 2 ~~~CP~C~~~l~~~~~-------~~~C~~C~~~-~~~~afCPeCgq~L 41 (81)
T 2jrp_A 2 EITCPVCHHALERNGD-------TAHCETCAKD-FSLQALCPDCRQPL 41 (81)
T ss_dssp CCCCSSSCSCCEECSS-------EEECTTTCCE-EEEEEECSSSCSCC
T ss_pred CCCCCCCCCccccCCC-------ceECcccccc-CCCcccCcchhhHH
Confidence 3679999888764322 1223333222 22233688887766
No 174
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.52 E-value=26 Score=23.95 Aligned_cols=39 Identities=18% Similarity=0.461 Sum_probs=27.8
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
...|..|-..+. +..+ ..-+..||..|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCCC
Confidence 468999998874 3332 335788888774 78899888764
No 175
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.43 E-value=33 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=27.9
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
...|..|-..+.....+ +..-+..||..|+ +|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCC
Confidence 45799999987653222 2335778888774 68889887754
No 176
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.41 E-value=26 Score=22.97 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=20.5
Q ss_pred cCCCCcccccc-cccCceeeeeCCCCcccHHHHHHH
Q 026833 120 LGGECVVCLEE-YEVGEVAREMPCKHKFHANCIEKW 154 (232)
Q Consensus 120 ~~~~C~IC~e~-~~~~~~~~~lpC~H~fh~~Ci~~w 154 (232)
+...|.||+.. |.++..-...-|.-.||..|-..|
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 46799999876 555533222335555666554444
No 177
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.90 E-value=33 Score=22.73 Aligned_cols=39 Identities=36% Similarity=0.843 Sum_probs=27.1
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
...|..|-..+. +..+ ..-+..||..|+ +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVV--SALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC-SCCE--EETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEec-cceE--EECCceeCccCC--------ccccCCCCCCC
Confidence 357999998876 3332 235677887774 68899888754
No 178
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.83 E-value=37 Score=23.15 Aligned_cols=41 Identities=24% Similarity=0.567 Sum_probs=28.8
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+...+.+ ..-+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 46899999987655443 345778888774 688888777543
No 179
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.39 E-value=25 Score=25.64 Aligned_cols=37 Identities=19% Similarity=0.526 Sum_probs=22.0
Q ss_pred CCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCccc
Q 026833 123 ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKM 168 (232)
Q Consensus 123 ~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~ 168 (232)
.|..|-..+...+.+. ..-+..||..|. .|-.|+..|
T Consensus 10 ~C~~C~~~I~~~e~~~-~a~~~~~H~~CF--------~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM-RVKDKVYHLECF--------KCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCC-CCSSCCCCTTTC--------BCTTTCCBC
T ss_pred cccCCCCeecCCceEE-EECCcccccccC--------ccccCCCCC
Confidence 6888877765432221 123566777664 577777666
No 180
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.05 E-value=17 Score=24.42 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=5.3
Q ss_pred CCCCcCcccCC
Q 026833 160 SCPVCRYKMPV 170 (232)
Q Consensus 160 tCP~CR~~~~~ 170 (232)
.|+.|+..++.
T Consensus 28 iC~~cg~~YPI 38 (69)
T 2pk7_A 28 ISKGAGLAYPI 38 (69)
T ss_dssp EETTTTEEEEE
T ss_pred EcCCCCcEecC
Confidence 45555544433
No 181
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.95 E-value=37 Score=22.25 Aligned_cols=40 Identities=20% Similarity=0.504 Sum_probs=27.7
Q ss_pred CCCCccccccccc--CceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEV--GEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~--~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+.. .... +..-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCC
Confidence 4579999998764 2121 2335678998885 7889988875
No 182
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.69 E-value=30 Score=22.04 Aligned_cols=41 Identities=20% Similarity=0.528 Sum_probs=28.5
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
...|..|...+...+.+.. .-+..||..|. .|-.|...|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCC
Confidence 4689999998775544322 34667888775 68889887754
No 183
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.60 E-value=7.5 Score=33.86 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=29.0
Q ss_pred cCCCCcccccccccCceeee--eCCC--CcccHHHHHHHHhcCCCCCCcCcc
Q 026833 120 LGGECVVCLEEYEVGEVARE--MPCK--HKFHANCIEKWLGINGSCPVCRYK 167 (232)
Q Consensus 120 ~~~~C~IC~e~~~~~~~~~~--lpC~--H~fh~~Ci~~wl~~~~tCP~CR~~ 167 (232)
....|+||-..-... .++. -.=| +.+|..|-..|-..+..||.|...
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 357999998774322 1110 0011 456667777888778899999653
No 184
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.16 E-value=34 Score=21.94 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=26.9
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+.. ..+ ..-+..||..|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCCCC
Confidence 3578999888763 332 234677887774 688898877643
No 185
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.02 E-value=45 Score=21.74 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=26.2
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|.-|-..+.. .. +..-+..||..|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~--v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RV--LEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CC--BCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecC-ee--EEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3578888887754 22 2345678888774 7888888775
No 186
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.99 E-value=36 Score=26.74 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=16.1
Q ss_pred ceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcc
Q 026833 135 EVAREMPCKHKFHANCIEKWLGINGSCPVCRYK 167 (232)
Q Consensus 135 ~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~ 167 (232)
...+...|||++-. .....||+|..+
T Consensus 137 ~~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34455668887641 223489999753
No 187
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.83 E-value=22 Score=19.32 Aligned_cols=12 Identities=50% Similarity=1.237 Sum_probs=8.5
Q ss_pred CCCCcCcccCCC
Q 026833 160 SCPVCRYKMPVE 171 (232)
Q Consensus 160 tCP~CR~~~~~~ 171 (232)
.||+|.+.++..
T Consensus 8 qcpvcqq~mpaa 19 (29)
T 3vhs_A 8 QCPVCQQMMPAA 19 (29)
T ss_dssp ECTTTCCEEEGG
T ss_pred eChHHHHhCcHH
Confidence 588887776543
No 188
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.64 E-value=34 Score=22.28 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=27.2
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
...|..|-..+...+.+. ..-+..||..|. +|-.|+..|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCC
Confidence 468999999876433321 224667887764 68888877754
No 189
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.62 E-value=43 Score=22.24 Aligned_cols=40 Identities=13% Similarity=0.359 Sum_probs=28.3
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCCC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~~ 171 (232)
...|..|-..+. +..+ ..-+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccCCC
Confidence 467999999877 3332 335778887774 799998888643
No 190
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.44 E-value=6.9 Score=26.92 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.5
Q ss_pred CCCCcccHHHHHHHHh
Q 026833 141 PCKHKFHANCIEKWLG 156 (232)
Q Consensus 141 pC~H~fh~~Ci~~wl~ 156 (232)
.|++.||..|...|=.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5899999999988843
No 191
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.17 E-value=62 Score=23.39 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=29.6
Q ss_pred CCCccccccccc-CceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccCC
Q 026833 122 GECVVCLEEYEV-GEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPV 170 (232)
Q Consensus 122 ~~C~IC~e~~~~-~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~~ 170 (232)
..|..|...+.. +... ...=+..||..|..+-+.....|..|...|..
T Consensus 30 F~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeE-EEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 467777776642 2111 12245678888877755444479999888764
No 192
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.50 E-value=33 Score=21.91 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=25.1
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+.. ..+ ..-+..||..|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGI--TYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCE--EETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceE--EECccccccCcC--------EECCCCCCCC
Confidence 3578888887753 332 234677887764 6888887775
No 193
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.17 E-value=19 Score=24.13 Aligned_cols=19 Identities=16% Similarity=-0.026 Sum_probs=13.4
Q ss_pred HHHhcCCCCCCcCcccCCC
Q 026833 153 KWLGINGSCPVCRYKMPVE 171 (232)
Q Consensus 153 ~wl~~~~tCP~CR~~~~~~ 171 (232)
+||..--.||+|+.++...
T Consensus 5 ~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEE
T ss_pred HHHHHHhCCCCCCCcCeEe
Confidence 4565566899999877543
No 194
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=21.00 E-value=46 Score=23.13 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=21.1
Q ss_pred CCCCcccccccccCceeee--eCCCCcccHHHHHH
Q 026833 121 GGECVVCLEEYEVGEVARE--MPCKHKFHANCIEK 153 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~--lpC~H~fh~~Ci~~ 153 (232)
...|.||...- .+..+.. -.|...||..|-..
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 46899997541 1333322 34899999999765
No 195
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.03 E-value=55 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.523 Sum_probs=26.2
Q ss_pred CCCCcccccccccCceeeeeCCCCcccHHHHHHHHhcCCCCCCcCcccC
Q 026833 121 GGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 169 (232)
Q Consensus 121 ~~~C~IC~e~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~tCP~CR~~~~ 169 (232)
...|..|-..+... . +..-+..||..|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~-~--v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG-G--VTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC-C--EESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCc-E--EEECCchhhhhhC--------CcccCCCcCC
Confidence 35788888877542 2 2345677887764 6888988874
Done!