Query 026835
Match_columns 232
No_of_seqs 140 out of 1105
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 23:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_B 40S ribosomal protein S 100.0 1.3E-77 4.5E-82 525.0 5.3 218 1-218 1-218 (227)
2 3u5c_D RP13, YS3, 40S ribosoma 100.0 2.8E-75 9.5E-80 513.1 17.6 217 1-220 1-218 (240)
3 2zkq_c 40S ribosomal protein S 100.0 2.3E-75 7.8E-80 515.0 10.0 217 1-217 1-217 (243)
4 2xzm_C KH domain containing pr 100.0 2.8E-72 9.4E-77 495.6 16.9 216 3-218 6-223 (243)
5 3j20_C 30S ribosomal protein S 100.0 1.5E-65 5.3E-70 444.6 13.8 205 5-223 1-208 (210)
6 2vqe_C 30S ribosomal protein S 100.0 4.7E-62 1.6E-66 430.0 14.5 195 6-206 17-221 (239)
7 3i1m_C 30S ribosomal protein S 100.0 2.2E-62 7.5E-67 430.4 11.2 196 6-217 17-221 (233)
8 3r8n_C 30S ribosomal protein S 100.0 3.1E-62 1.1E-66 423.1 10.4 180 6-191 16-204 (206)
9 3bbn_C Ribosomal protein S3; s 100.0 4.9E-61 1.7E-65 418.9 10.5 183 6-191 17-216 (218)
10 1wh9_A 40S ribosomal protein S 99.9 4.5E-23 1.5E-27 157.8 7.9 87 13-99 4-90 (92)
11 2pt7_G HP1451, hypothetical pr 96.1 0.011 3.7E-07 48.5 6.2 61 18-78 4-67 (152)
12 3gku_A Probable RNA-binding pr 92.0 0.21 7.2E-06 43.3 5.5 61 18-78 63-126 (225)
13 1zzk_A Heterogeneous nuclear r 64.2 3.8 0.00013 29.0 2.3 29 45-73 8-36 (82)
14 1dtj_A RNA-binding neurooncolo 62.6 2.7 9.4E-05 29.1 1.3 27 46-72 5-31 (76)
15 2opv_A KHSRP protein; KH domai 62.3 2.1 7.3E-05 30.6 0.7 29 45-73 15-43 (85)
16 2hh2_A KH-type splicing regula 61.1 4.9 0.00017 30.1 2.6 28 45-72 8-35 (107)
17 1we8_A Tudor and KH domain con 60.8 2.4 8.2E-05 31.6 0.7 30 44-73 15-44 (104)
18 2cxc_A NUSA; transcription ter 58.0 8.5 0.00029 30.9 3.6 59 21-79 78-138 (144)
19 2axy_A Poly(RC)-binding protei 57.8 1.9 6.4E-05 30.2 -0.3 28 45-72 6-33 (73)
20 1wvn_A Poly(RC)-binding protei 57.4 3.3 0.00011 29.3 1.0 27 46-72 8-34 (82)
21 3iev_A GTP-binding protein ERA 56.3 12 0.00042 32.3 4.6 46 45-93 239-292 (308)
22 1x4m_A FAR upstream element bi 54.4 2.9 9.9E-05 30.6 0.2 29 46-74 17-45 (94)
23 2p2r_A Poly(RC)-binding protei 54.3 2.8 9.7E-05 29.2 0.2 27 46-72 7-33 (76)
24 1vig_A Vigilin; RNA-binding pr 51.8 4.2 0.00014 28.2 0.7 27 46-72 7-33 (71)
25 1x4n_A FAR upstream element bi 51.6 3 0.0001 30.3 -0.0 29 44-72 15-43 (92)
26 2cxc_A NUSA; transcription ter 51.4 13 0.00044 29.8 3.6 48 26-73 18-65 (144)
27 1ec6_A RNA-binding protein NOV 49.9 4.2 0.00014 29.1 0.5 29 45-73 4-32 (87)
28 3krm_A Insulin-like growth fac 49.6 5.1 0.00017 31.5 1.0 31 44-74 3-33 (163)
29 1j5k_A Heterogeneous nuclear r 49.1 3.8 0.00013 29.5 0.2 27 46-72 16-42 (89)
30 1wf3_A GTP-binding protein; GT 48.7 15 0.0005 31.9 3.9 46 45-93 229-282 (301)
31 2hh3_A KH-type splicing regula 47.5 19 0.00067 26.9 3.9 31 43-73 10-40 (106)
32 1ega_A Protein (GTP-binding pr 45.9 56 0.0019 28.0 7.2 47 44-93 229-283 (301)
33 2ctl_A Vigilin; K homology typ 44.2 7.5 0.00026 28.6 1.1 30 45-74 18-47 (97)
34 2dgr_A Ring finger and KH doma 43.6 3.7 0.00013 29.7 -0.7 27 47-73 13-39 (83)
35 2jvf_A De novo protein M7; tet 43.3 55 0.0019 23.7 5.6 42 37-88 10-54 (96)
36 2cte_A Vigilin; K homology typ 43.3 5.7 0.0002 29.0 0.3 34 46-79 19-52 (94)
37 2ctk_A Vigilin; K homology typ 39.3 4.7 0.00016 30.2 -0.7 30 43-72 16-45 (104)
38 2ctm_A Vigilin; K homology typ 37.4 8.1 0.00028 28.4 0.3 30 45-74 18-47 (95)
39 2ycb_A Beta-CAsp RNAse, cleava 37.1 21 0.00073 34.3 3.4 54 19-77 7-61 (636)
40 1t0a_A 2C-methyl-D-erythritol 36.3 1.4E+02 0.0046 24.4 7.6 49 28-88 85-133 (159)
41 3af5_A Putative uncharacterize 35.9 21 0.00071 34.5 3.1 54 19-77 16-70 (651)
42 1gx1_A 2-C-methyl-D-erythritol 33.8 1.4E+02 0.0049 24.3 7.3 49 28-88 84-132 (160)
43 2anr_A Neuro-oncological ventr 33.4 10 0.00035 30.1 0.4 30 45-74 7-36 (178)
44 3f0d_A 2-C-methyl-D-erythritol 33.1 1.6E+02 0.0054 24.5 7.6 50 27-88 105-154 (183)
45 2jzx_A Poly(RC)-binding protei 32.5 8.4 0.00029 30.1 -0.3 30 45-74 6-35 (160)
46 2jvz_A KH type-splicing, FAR u 32.2 12 0.00042 29.0 0.6 28 46-73 4-31 (164)
47 3m20_A 4-oxalocrotonate tautom 31.5 36 0.0012 22.2 2.9 32 62-93 15-46 (62)
48 2xr1_A Cleavage and polyadenyl 30.1 20 0.00068 34.7 1.8 54 19-77 11-65 (640)
49 1iv3_A 2-C-methyl-D-erythritol 29.7 1.1E+02 0.0037 24.8 5.9 49 28-88 83-131 (152)
50 2anr_A Neuro-oncological ventr 29.6 13 0.00044 29.5 0.4 28 45-72 105-132 (178)
51 1j4w_A FUSE binding protein; s 29.5 17 0.00058 28.8 1.1 28 45-72 105-132 (174)
52 3krm_A Insulin-like growth fac 28.6 20 0.00067 28.0 1.3 28 46-73 87-114 (163)
53 3b6n_A 2-C-methyl-D-erythritol 27.7 1.5E+02 0.0052 24.7 6.6 49 28-88 111-159 (187)
54 2pmp_A 2-C-methyl-D-erythritol 27.6 1.2E+02 0.0042 24.7 5.9 49 28-88 86-134 (160)
55 1j4w_A FUSE binding protein; s 26.7 16 0.00053 29.0 0.4 28 46-73 5-32 (174)
56 2jzx_A Poly(RC)-binding protei 26.7 14 0.00048 28.7 0.1 31 44-74 89-119 (160)
57 3re3_A 2-C-methyl-D-erythritol 26.6 1.3E+02 0.0043 24.6 5.8 50 27-88 88-137 (162)
58 3m21_A Probable tautomerase HP 26.0 74 0.0025 20.9 3.7 32 63-94 20-51 (67)
59 3h90_A Ferrous-iron efflux pum 25.7 1.4E+02 0.005 25.1 6.4 71 18-90 208-279 (283)
60 2ycb_A Beta-CAsp RNAse, cleava 25.0 72 0.0025 30.6 4.8 75 20-107 75-150 (636)
61 3elg_A Uncharacterized peripla 24.4 1.1E+02 0.0036 23.4 4.8 33 17-49 13-48 (128)
62 3af5_A Putative uncharacterize 24.4 82 0.0028 30.3 5.0 50 20-71 84-134 (651)
63 2jvz_A KH type-splicing, FAR u 24.0 15 0.00053 28.4 -0.2 27 46-72 93-119 (164)
64 2xr1_A Cleavage and polyadenyl 23.3 75 0.0026 30.6 4.5 50 20-71 79-129 (640)
65 1n91_A ORF, hypothetical prote 23.0 2.3E+02 0.0077 21.4 6.3 40 63-102 49-96 (108)
66 3mb2_A 4-oxalocrotonate tautom 22.0 86 0.0029 20.9 3.5 31 63-93 18-48 (72)
67 2asb_A Transcription elongatio 21.7 1.1E+02 0.0037 26.6 4.8 59 16-74 80-147 (251)
68 2ctf_A Vigilin; K homology typ 21.4 23 0.00078 26.3 0.4 23 50-72 33-55 (102)
69 1wju_A NEDD8 ultimate buster-1 21.3 1.5E+02 0.005 22.0 4.9 53 27-87 8-63 (100)
70 3abf_A 4-oxalocrotonate tautom 21.2 1.2E+02 0.004 19.3 3.9 31 63-93 18-48 (64)
71 2qnd_A FMR1 protein; KH domain 21.1 30 0.001 27.0 1.0 27 46-72 69-95 (144)
72 2aal_A Malonate semialdehyde d 20.3 93 0.0032 23.2 3.7 51 41-93 62-112 (131)
No 1
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-77 Score=525.01 Aligned_cols=218 Identities=92% Similarity=1.342 Sum_probs=204.5
Q ss_pred CccccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCC
Q 026835 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (232)
Q Consensus 1 ~~~~~~~~s~w~a~~~~~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~ 80 (232)
|+.+|+.+++|++|+.++++||+||.++|.+||||+|+|+|++++++|+||+++||++||++|+++++|++.|++.|+++
T Consensus 1 ~~~~~~~~rkfv~dg~~~a~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~~ 80 (227)
T 3iz6_B 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFL 80 (227)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCCC
T ss_pred CccchhhhhhhhhcCeehHHHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEcccccccceeeeeeecCeeeec
Q 026835 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (232)
Q Consensus 81 ~~~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~t 160 (232)
+++++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+|+|||+|||++|+|+||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGakGikI~iSGRL~GaiARtE~~~eG~vlhT 160 (227)
T 3iz6_B 81 ENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (227)
T ss_dssp SCCCCCEEECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCCSEEECCBCSCGGGSSCCCBCCEEECCCSS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCceEEEEEecccCCceeeEeeeeCCeeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEccCCcccc
Q 026835 161 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVY 218 (232)
Q Consensus 161 G~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~lpd~i~i~~~~~~~~ 218 (232)
|||++++||||+++|+|+||+||||||||+++||+|++||.++|||+|+|++|++++.
T Consensus 161 lqtlra~IDya~~~a~T~yGviGVKVWI~~~~dp~g~~g~~~~lpD~v~i~~pk~~~~ 218 (227)
T 3iz6_B 161 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEENE 218 (227)
T ss_dssp SSCTTSCEEECCCCCBCSSSBCCCCCEEECSCTTSCCCCCSSCCCCCCSCCCCSSCCC
T ss_pred CChhhheeeEEEEEEEcCCeeEEEEEEEECCCCcccccCCCCCCCCeEEEeCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999853
No 2
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=2.8e-75 Score=513.09 Aligned_cols=217 Identities=70% Similarity=1.089 Sum_probs=211.2
Q ss_pred CccccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCC
Q 026835 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (232)
Q Consensus 1 ~~~~~~~~s~w~a~~~~~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~ 80 (232)
|+.+|+.+++||+++.++++||+||.++|.++|||+|+|+|++++++|+||+++||+|||++|++|++|++.|+++|+++
T Consensus 1 ~~~~~~~~~k~vadg~~~~~ire~l~k~l~~agis~IeI~Rt~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~ 80 (240)
T 3u5c_D 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYA 80 (240)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSSCEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCC
T ss_pred CcccccccceEeecCchHHHHHHHHHHHHHhCCcceEEEEEcCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEcccccccceeeeeeecCeeeec
Q 026835 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (232)
Q Consensus 81 ~~~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~t 160 (232)
+++++|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+|||+|||++|+||||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGakGikI~iSGRL~Ga~ARtE~~~eG~vlhT 160 (240)
T 3u5c_D 81 PGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHS 160 (240)
T ss_dssp TTSSEEEEECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTCSEEEEEEEECSSSSSCEEEEEEEECCCCS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCceeEEEEecccCCceeeEEeeecCeeccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEEEecCCeeeeEEEEEEcCCCCC-CCCCCCCCCCCeEEEccCCcccccC
Q 026835 161 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQK-GKQGPTTPLPDLVTIHPLKEEVYVA 220 (232)
Q Consensus 161 G~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~-g~~g~~~~lpd~i~i~~~~~~~~~~ 220 (232)
|||++++||||+++|+|+||+||||||||+ ||+ |++|| .+|||+|+|++|++++.+.
T Consensus 161 gqtlra~IDYa~~~a~T~yGviGVKVWI~~--dp~~g~~g~-~~lpD~v~i~epk~~~~~~ 218 (240)
T 3u5c_D 161 GQPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGP-KALPDAVTIIEPKEEEPIL 218 (240)
T ss_dssp SHHHHHHEEEEEEEEECSSCEEEEEEEEEC--CGGGCSSSC-SSCTTCCEECCCCCCCCCC
T ss_pred CChhhheeeEEEEEEEcCCeeEEEEEEEEe--CcccccCCC-CCCCCeEEEECCccccCCC
Confidence 999999999999999999999999999999 999 99999 9999999999999986433
No 3
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.3e-75 Score=514.98 Aligned_cols=217 Identities=85% Similarity=1.245 Sum_probs=190.1
Q ss_pred CccccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCC
Q 026835 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (232)
Q Consensus 1 ~~~~~~~~s~w~a~~~~~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~ 80 (232)
|+.+|+..++|++|+.++.+||+||.++|.++|||+|+|+|++++++|+||+++||.+||++|+++++|++.|+++|++.
T Consensus 1 ~~~~~~~~rkfv~dgv~~~~IR~~l~k~l~~agis~IeIeRt~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~ 80 (243)
T 2zkq_c 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFP 80 (243)
T ss_dssp -CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTT
T ss_pred CCcchhhhhHHHhcChHHHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHhCcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEcccccccceeeeeeecCeeeec
Q 026835 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (232)
Q Consensus 81 ~~~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~t 160 (232)
+++++|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+|||+|||++|+||||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGakGikI~iSGRL~GaiARtE~~~eG~vLhT 160 (243)
T 2zkq_c 81 EGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160 (243)
T ss_dssp TCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEEECSSGGGSSCCCBCCEEESSHHH
T ss_pred CceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCceEEEEEecchhhHhhhhhhhcCcEEeec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEccCCccc
Q 026835 161 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 217 (232)
Q Consensus 161 G~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~lpd~i~i~~~~~~~ 217 (232)
|+|++++||||+++|+|+||+||||||||+++||+|++||+++|||+|+|++|+|+.
T Consensus 161 g~plra~IDYa~~~a~T~yGvlGVKVWI~~~~dp~g~~gp~~~lpD~v~i~e~k~~~ 217 (243)
T 2zkq_c 161 GDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217 (243)
T ss_dssp HSSTTCCEEEEEECCCCSSCCCCEEEEEECCCC------------------------
T ss_pred CchhhhceeEEEEEEEcCCceEEEEEEEecCCCcCCcCCCCCCCCCeEEEeCCcccc
Confidence 999999999999999999999999999999999999999999999999999999985
No 4
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=2.8e-72 Score=495.59 Aligned_cols=216 Identities=51% Similarity=0.902 Sum_probs=211.6
Q ss_pred cccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCC
Q 026835 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN 82 (232)
Q Consensus 3 ~~~~~~s~w~a~~~~~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~ 82 (232)
.+|+..++||+++..+++||+||.++|.++|||+|+|+|++++++|+||+++||++||++|+++++|++.|++.|++.++
T Consensus 6 ~~~~~~kkfv~~~l~ed~Ir~~l~~~l~~agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~ 85 (243)
T 2xzm_C 6 RAINKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDD 85 (243)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCCTTT
T ss_pred hhhhhHHHHHHhHhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhCcCCc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEcccccccceeeeeeecCeeeeccc
Q 026835 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ 162 (232)
Q Consensus 83 ~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~tG~ 162 (232)
+++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+|+|||+|||++|+|||||+
T Consensus 86 ~v~I~i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGakGIkI~iSGRL~GaiARtE~~~eG~vL~T~r 165 (243)
T 2xzm_C 86 QIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQ 165 (243)
T ss_dssp TSEEEEEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEEEEECTTSSSCEEEEEEEECCCCSSS
T ss_pred eEEEEEEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCCceEEEEEeCCccchhheeeeeeCCeEeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCC--CCCCCCCCeEEEccCCcccc
Q 026835 163 PVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQ--GPTTPLPDLVTIHPLKEEVY 218 (232)
Q Consensus 163 ~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~--g~~~~lpd~i~i~~~~~~~~ 218 (232)
|++++||||+++|+|+||+||||||||+++||+|++ ||+++|||+|+|++|++++.
T Consensus 166 plra~IDYa~~~a~T~yGvlGVKVWI~~~~~~~g~~~~gp~~~lpD~v~i~e~k~~~~ 223 (243)
T 2xzm_C 166 PKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPKQITD 223 (243)
T ss_dssp HHHHSEEEEEEEEECSSSEEEEEEEEECCCCCCTTCCSSCCSCCSSCCBCCCCCCCCC
T ss_pred chhhheEEEEEEEEcCCceEEEEEEEecCCCcCCcccCCCCCCCCCeEEEeCCCcccc
Confidence 999999999999999999999999999999999999 99999999999999999864
No 5
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-65 Score=444.59 Aligned_cols=205 Identities=37% Similarity=0.576 Sum_probs=177.7
Q ss_pred cCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCee
Q 026835 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84 (232)
Q Consensus 5 ~~~~s~w~a~~~~~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v 84 (232)
|+.+++|.+++..+.+||+||.++|.++|||+|+|+|++++++|+||+++||.+||++|++|++|++.|++.|++ +++
T Consensus 1 m~~~k~fv~~~~~d~~Ir~~l~k~l~~agis~ieI~r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~--~~v 78 (210)
T 3j20_C 1 MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGL--ENP 78 (210)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSC--SSC
T ss_pred CcchHHHHHhhhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC--Cce
Confidence 677888999999999999999999999999999999999999999999999999999999999999999999996 568
Q ss_pred EEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEcccccccceeeeeeecCee-eecccc
Q 026835 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYM-ISSGQP 163 (232)
Q Consensus 85 ~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~rARte~~~~G~v-l~tG~~ 163 (232)
+|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|.|||+|||++|+| |||
T Consensus 79 ~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~GakGikI~iSGRL~GeiARtE~~~eG~vpl~t--- 155 (210)
T 3j20_C 79 QIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVG--- 155 (210)
T ss_dssp EEEEEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSEEEEEEEECTTTTSCEEEEEEEECCCCSS---
T ss_pred EEEEEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCceEEEEEecccCcceeeEEeeecceeeccC---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred ccc--ceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEccCCcccccCCCC
Q 026835 164 VNE--YIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPAT 223 (232)
Q Consensus 164 ~~~--~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~lpd~i~i~~~~~~~~~~~~~ 223 (232)
+++ +||||+++|+|+||+||||||||+| +.+|||+++|++++.++.+++..
T Consensus 156 l~a~~~IDya~~~a~T~yGviGVKVwI~~~---------e~~lpd~~~i~~~~~~~~~~~~~ 208 (210)
T 3j20_C 156 NPAETLVSKGYAQALLKLGVIGVKVAIMPP---------GARLPDEIEIIEKPVEEEVVSNE 208 (210)
T ss_dssp SHHHHHSEEEEEEEECSSCEEEEEEEEECC---------C----------------------
T ss_pred CcchhcEEEEEEEEEcCCcEEEEEEEEECC---------CCCCCCcEEEeCcchhhhhhccc
Confidence 887 8999999999999999999999997 57899999999999887666543
No 6
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=4.7e-62 Score=429.98 Aligned_cols=195 Identities=27% Similarity=0.369 Sum_probs=177.1
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
+|+|+||+++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++||++||++|+++++|++.|+++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~l~k~l~~agis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~ 96 (239)
T 2vqe_C 17 DWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 96 (239)
T ss_dssp CCSBCCCCCTTTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSSSSHHHHHHHHHHHHST
T ss_pred CcceEEeCCHhHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCeEEEEEEeCCCcceecCCchHHHHHHHHHHHHhC
Confidence 599999999888885 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEccccccc-ceeeeeeecCee
Q 026835 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (232)
Q Consensus 79 ~~~~~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v 157 (232)
.+++|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+ |||+|||++|+|
T Consensus 97 ---~~v~I~i~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~gakGIkI~iSGRL~GaeiARtE~~~eG~v 173 (239)
T 2vqe_C 97 ---KNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRV 173 (239)
T ss_dssp ---TCCCCEEEECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEEECSCTTTCSSCCCBCCEEECC
T ss_pred ---CeeEEEEEEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCCCceEEEEcCCcchhhhhhhhhhhcCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -eecccccccceeEEEEEEecCCeeeeEEEEEEcCC-CCCCCCCCCCCCCC
Q 026835 158 -ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEW-DQKGKQGPTTPLPD 206 (232)
Q Consensus 158 -l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~-~p~g~~g~~~~lpd 206 (232)
||| ++++||||+++|+|+||+||||||||+++ .|.+..+|..++|-
T Consensus 174 pL~T---lra~IDYa~~~a~T~yGviGVKVWI~~ge~l~~~~~~~~~~~~~ 221 (239)
T 2vqe_C 174 PLHT---LRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELPK 221 (239)
T ss_dssp CTTC---GGGCEEEEEECCBCSSCBCCEEEEEECCCC--------------
T ss_pred ccCC---ccceeEEEEEEEEcCCeeEEEEEEEEcCCcCCCcCCCCCCCCcc
Confidence 999 99999999999999999999999999985 56666666555543
No 7
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=2.2e-62 Score=430.40 Aligned_cols=196 Identities=24% Similarity=0.332 Sum_probs=176.7
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
+|+|+|||++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++||+|||++|++|++|++.|++.|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~kIr~~l~k~l~~agis~IeI~R~~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~ 96 (233)
T 3i1m_C 17 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 96 (233)
T ss_dssp CCSBCCCCCHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHT
T ss_pred CceeEEecCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 599999999888875 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEccccccc-ceeeeeeecCee
Q 026835 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (232)
Q Consensus 79 ~~~~~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v 157 (232)
.+++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+|+ |||+|||++|+|
T Consensus 97 ---~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGakGikI~iSGRL~GaeiARtE~~~eG~v 173 (233)
T 3i1m_C 97 ---VPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRV 173 (233)
T ss_dssp ---SCBCCEEEECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEEEESSTTSCSSCCCCBCCEECC
T ss_pred ---CceEEEEEeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCCceEEEEEccccCCCcceeEEEEecCee
Confidence 4599999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -eecccccccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEccCCccc
Q 026835 158 -ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 217 (232)
Q Consensus 158 -l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~lpd~i~i~~~~~~~ 217 (232)
||| ++++||||+++|+|+||+||||||||++ +.+|+.-.+.+.++..
T Consensus 174 PL~T---lra~IDY~~~~a~T~yGviGVKVWI~~g----------e~~~~~~~~~~~~~~~ 221 (233)
T 3i1m_C 174 PLHT---LRADIDYNTSEAHTTYGVIGVKVWIFKG----------EILGGMAAVEQPEKPA 221 (233)
T ss_dssp CTTC---SSSEEEEEEECCEETTEECEEEEEEEEE----------CC--------------
T ss_pred eccc---cccccEEEEEEEEcCCeeEEEEEEEECC----------CcCCchhhhhcccccc
Confidence 999 9999999999999999999999999997 3466554444444433
No 8
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=3.1e-62 Score=423.06 Aligned_cols=180 Identities=26% Similarity=0.350 Sum_probs=175.7
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
+|+|+|||++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++||++||++|+++++|++.|++.|+
T Consensus 16 ~w~S~W~a~~k~y~~~l~eD~~Ir~~l~k~l~~agis~ieI~r~~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~ 95 (206)
T 3r8n_C 16 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95 (206)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEECCCCSSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHS
T ss_pred CceeEEcCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 699999999888875 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEccccccc-ceeeeeeecCee
Q 026835 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (232)
Q Consensus 79 ~~~~~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v 157 (232)
.+++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+|+ |||+|||++|+|
T Consensus 96 ---~~v~I~i~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~e~~~eG~v 172 (206)
T 3r8n_C 96 ---VPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRV 172 (206)
T ss_dssp ---SCBCCBCCBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEECCSSSTTCSSCCCCCCEESCC
T ss_pred ---CceEEEEEecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCCCceEEEEccccCCCcceeEEEEeccee
Confidence 4599999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -eecccccccceeEEEEEEecCCeeeeEEEEEEcC
Q 026835 158 -ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE 191 (232)
Q Consensus 158 -l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~ 191 (232)
||| ++++||||+++|+|+||+||||||||++
T Consensus 173 pl~t---lra~IDy~~~~a~T~yGviGVKVwI~~g 204 (206)
T 3r8n_C 173 PLHT---LRADIDYNTSEAHTTYGVIGVKVWIFKG 204 (206)
T ss_dssp CTTC---SSSCEEEEEEEEEETTEEEEEEEEEECC
T ss_pred eccc---cccccEEEEEEEEcCCeeEEEEEEEEcC
Confidence 999 9999999999999999999999999987
No 9
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.9e-61 Score=418.88 Aligned_cols=183 Identities=17% Similarity=0.268 Sum_probs=177.8
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhcc-----C---CeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHH
Q 026835 6 SKKRKFVADGVFFAE-------LNEVLTRELAE-----D---GYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70 (232)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~~~~~~-----a---gis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~ 70 (232)
+|+|+||+++++|++ ||+||.++|.+ | |||+|+|+|+++.++|+||+++|+++||++|+++++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~i~~~l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vIGk~g~~i~~L~ 96 (218)
T 3bbn_C 17 SHYSLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLK 96 (218)
T ss_dssp CCSBCCCCCTTSSHHHHHHHHHHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTSCSSSCTTHHHH
T ss_pred CcceEEeCChhHHHHHHHHHHHHHHHHHHHHhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEecCCcHHHHHHH
Confidence 599999999888875 99999999997 8 99999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEccccccc-ceee
Q 026835 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKS 149 (232)
Q Consensus 71 ~~L~k~~~~~~~~v~I~v~ev~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~-rARt 149 (232)
+.|++.|++.+++++|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+ |||+
T Consensus 97 ~~l~k~~~~~~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~ 176 (218)
T 3bbn_C 97 INVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARI 176 (218)
T ss_dssp HHHHHHSCSSCCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCSEEEEECCSCCTTCSSCCC
T ss_pred HHHHHHhccCCceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCCCeEEEEEccCcchhhheeE
Confidence 999999976668999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred eeeecCee-eecccccccceeEEEEEEecCCeeeeEEEEEEcC
Q 026835 150 MKFKDGYM-ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE 191 (232)
Q Consensus 150 e~~~~G~v-l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~ 191 (232)
|||++|+| ||| ++++||||+++|+|+||+||||||||+|
T Consensus 177 e~~~eG~vpl~t---lra~IDy~~~~a~T~yGviGVKVWI~~~ 216 (218)
T 3bbn_C 177 EWIREGRVPLQT---IRAKIDYCAYTVRTIYGVLGIKIWIFMG 216 (218)
T ss_dssp CEEEEECCCSSC---STTCCBCCEEECCCSSCCCEEEEEEECC
T ss_pred EeEecccccCCc---cccceEEEEEEEEcCCeeEEEEEEEecC
Confidence 99999999 999 9999999999999999999999999997
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=99.88 E-value=4.5e-23 Score=157.79 Aligned_cols=87 Identities=80% Similarity=1.064 Sum_probs=84.2
Q ss_pred ecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEEEEec
Q 026835 13 ADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVN 92 (232)
Q Consensus 13 a~~~~~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~ 92 (232)
+|+.++++||+||.++|.+||||+|+|+|+++.++|+||+++||++||++|++|++|+..|++.|++.+++++|++.||+
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~ 83 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred CCCcChH
Q 026835 93 NRGLCAI 99 (232)
Q Consensus 93 ~p~~~a~ 99 (232)
+|++||+
T Consensus 84 ~P~ldA~ 90 (92)
T 1wh9_A 84 TRGSGPS 90 (92)
T ss_dssp CSCCCSC
T ss_pred CCCcCCC
Confidence 9999985
No 11
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=96.06 E-value=0.011 Score=48.48 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhhccCCee--eeEE-EEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 18 FAELNEVLTRELAEDGYS--GVEV-RVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 18 ~~~Ire~i~~~~~~agis--~ieI-~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
..++.+||...|...|+. .+++ ....+.+.+.|.....|++||+.|++++.|+..+....+
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHHhh
Confidence 456899999999999985 4666 456778999999999999999999999999999987775
No 12
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=92.04 E-value=0.21 Score=43.27 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=49.5
Q ss_pred hHHHHHHHHhhhccCCee-eeEEEEc--CCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 18 FAELNEVLTRELAEDGYS-GVEVRVT--PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 18 ~~~Ire~i~~~~~~agis-~ieI~rt--~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
.....+||+..|...|+. .|++... .+.+.|.|.....+.+||++|+.++.|+..+....+
T Consensus 63 ~~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 345789999999988874 4455432 367889998889999999999999999999998775
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=64.21 E-value=3.8 Score=29.05 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=23.2
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
..++.|....-+.|||++|+.|++|++.-
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~t 36 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 36 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHHH
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHHH
Confidence 35667777888999999999998877663
No 14
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=62.64 E-value=2.7 Score=29.08 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
+++.|-...-|.|||++|+.|++|++.
T Consensus 5 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 31 (76)
T 1dtj_A 5 VEMAVPENLVGAILGKGGKTLVEYQEL 31 (76)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCchHHHHHHHH
Confidence 456666778889999999999887765
No 15
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=62.35 E-value=2.1 Score=30.63 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=22.9
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
...+.|...+-|.|||++|+.|++|++.-
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 43 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERA 43 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHH
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHH
Confidence 35666677888999999999998877653
No 16
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=61.14 E-value=4.9 Score=30.11 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.7
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.+++.|-...-+.|||++|+.|++|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~ 35 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQ 35 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHH
Confidence 4677888889999999999999887665
No 17
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=60.79 E-value=2.4 Score=31.61 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 44 ~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
...++.|-..+-|.|||++|+.|++|++.-
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 44 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKAS 44 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHH
Confidence 346677778888999999999998877664
No 18
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=58.01 E-value=8.5 Score=30.85 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=43.3
Q ss_pred HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEe--cCCceeecCCcchHHHHHHHHHHHhCC
Q 026835 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRA--TRTQNVLGEKGRRIRELTSVVQKRFKF 79 (232)
Q Consensus 21 Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~--~rPg~iIG~~g~~i~~l~~~L~k~~~~ 79 (232)
..+|+.+.|.-|.+.+|.+.-....-...+.+ ..-+..||++|+.++-..+.....++.
T Consensus 78 ~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 78 LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 78899999999999999887533333344444 345679999999998777777766653
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=57.84 E-value=1.9 Score=30.15 Aligned_cols=28 Identities=11% Similarity=0.487 Sum_probs=22.9
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.+++.|....-|.|||++|+.|++|++.
T Consensus 6 ~~~i~ip~~~ig~iIGkgG~~Ik~I~~~ 33 (73)
T 2axy_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREE 33 (73)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChhHeeeEECCCCHHHHHHHHH
Confidence 4566777788889999999999887765
No 20
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=57.38 E-value=3.3 Score=29.30 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=21.8
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.++.|-...-|.|||++|+.|++|++.
T Consensus 8 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 34 (82)
T 1wvn_A 8 HELTIPNNLIGCIIGRQGANINEIRQM 34 (82)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEchHhccceeCCCchhHHHHHHH
Confidence 456666778889999999999887765
No 21
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=56.27 E-value=12 Score=32.34 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=35.5
Q ss_pred eEEEEEEecCCc---eeecCCcchHHHH----HHHHHHHhCCCCCeeEEEE-EEecC
Q 026835 45 RTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA-EKVNN 93 (232)
Q Consensus 45 ~i~I~I~~~rPg---~iIG~~g~~i~~l----~~~L~k~~~~~~~~v~I~v-~ev~~ 93 (232)
.+.-+|+++|++ ++||++|+.|+++ +..|++.|+ .+|.+++ ++|++
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~---~~v~l~l~vkv~~ 292 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILG---RPVYLELWVKVVP 292 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SCEEEEEEEEECT
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhC---CceEEEEEEEECC
Confidence 678899999887 5999999999766 557888898 6777664 44544
No 22
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=54.41 E-value=2.9 Score=30.57 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=22.8
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
+++.|-..+-+.|||++|+.|++|++.-.
T Consensus 17 ~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tg 45 (94)
T 1x4m_A 17 QEIMIPASKAGLVIGKGGETIKQLQERAG 45 (94)
T ss_dssp EEEEECHHHHHHHSCSSSSHHHHHHHHHT
T ss_pred EEEEEChhhcceEECCCCHHHHHHHHHHC
Confidence 45555667888999999999999887644
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=54.30 E-value=2.8 Score=29.19 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.++.|-...-|.|||++|+.|++|++.
T Consensus 7 ~~i~Ip~~~vg~iIGkgG~~Ik~I~~~ 33 (76)
T 2p2r_A 7 HELTIPNDLIGCIIGRQGAKINEIRQM 33 (76)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCChHHHHHHHH
Confidence 455666677789999999999887665
No 24
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=51.79 E-value=4.2 Score=28.19 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
..+.|-..+-+.|||++|+.|++|++.
T Consensus 7 ~~i~I~~~~ig~iIG~gG~~I~~I~e~ 33 (71)
T 1vig_A 7 VEINIDHKFHRHLIGKSGANINRIKDQ 33 (71)
T ss_dssp EEEEECSSHHHHHTCSSCCHHHHHHHH
T ss_pred EEEEECHHHhhhhcCCCCccHHHHHHH
Confidence 445556677788999999999888776
No 25
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=51.64 E-value=3 Score=30.33 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCceeecCCcchHHHHHHH
Q 026835 44 VRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 44 ~~i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
...++.|-...-+.|||++|+.|++|++.
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~ 43 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQE 43 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEEChHHcceeECCCchHHHHHHHH
Confidence 34556666678889999999999887665
No 26
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=51.37 E-value=13 Score=29.80 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=38.6
Q ss_pred HhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 26 TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 26 ~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
+..+.++.+-++-+.-..+++.+.+.....|..+|.+|++++.+++.|
T Consensus 18 fe~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~el 65 (144)
T 2cxc_A 18 FHSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREAL 65 (144)
T ss_dssp HHHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHh
Confidence 345567888888776666888888877777999999999999988777
No 27
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=49.87 E-value=4.2 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.4
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
.+++.|-...-|.|||++|+.|++|++.-
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~t 32 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELT 32 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHh
Confidence 34566666778899999999998877653
No 28
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=49.63 E-value=5.1 Score=31.46 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=25.5
Q ss_pred CeEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 44 ~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
..+++.|....-|.+||++|+.|++|++.-.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg 33 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFAS 33 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHC
Confidence 4567788888889999999999988877654
No 29
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=49.13 E-value=3.8 Score=29.54 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=21.1
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.++.|....-+.|||++|+.|++|++.
T Consensus 16 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 42 (89)
T 1j5k_A 16 TQVTIPKDLAGSIIGKGGQRIKQIRHE 42 (89)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEChhhcceeECCCCHhHHHHHHH
Confidence 455666677788999999999887665
No 30
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=48.68 E-value=15 Score=31.93 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=34.4
Q ss_pred eEEEEEEecCCc---eeecCCcchHHHH----HHHHHHHhCCCCCeeEEEE-EEecC
Q 026835 45 RTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA-EKVNN 93 (232)
Q Consensus 45 ~i~I~I~~~rPg---~iIG~~g~~i~~l----~~~L~k~~~~~~~~v~I~v-~ev~~ 93 (232)
.+..+|+++|++ ++||++|+.|+++ +..|++.|+ .+|.+++ ++|++
T Consensus 229 ~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~---~~v~l~l~vkv~~ 282 (301)
T 1wf3_A 229 YIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLG---KKVYLDLEVKVYP 282 (301)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SEEEEEEEEEECT
T ss_pred EEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHC---CceEEEEEEEECC
Confidence 466689999886 5999999999765 567888888 6777664 34443
No 31
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=47.49 E-value=19 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 43 ~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
+..+++.|...+-+.|||++|+.|++|++.-
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~T 40 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 40 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHH
Confidence 4456778888899999999999998877664
No 32
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=45.88 E-value=56 Score=28.01 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=34.1
Q ss_pred CeEEEEEEecCCc---eeecCCcchHHHH----HHHHHHHhCCCCCeeEEEE-EEecC
Q 026835 44 VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA-EKVNN 93 (232)
Q Consensus 44 ~~i~I~I~~~rPg---~iIG~~g~~i~~l----~~~L~k~~~~~~~~v~I~v-~ev~~ 93 (232)
..+..+|++.+.+ ++||++|+.|+++ +..|++.|+ .++.++. ++|++
T Consensus 229 ~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~---~~v~l~l~vkv~~ 283 (301)
T 1ega_A 229 YDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFE---APVHLELWVKVKS 283 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTT---SCEEEEEEEEETT
T ss_pred EEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHC---CCeEEEEEEEECC
Confidence 3577889997765 5999999999766 567888888 5666654 33433
No 33
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=44.19 E-value=7.5 Score=28.64 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=23.3
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
.+.+.|-...-+.|||++|+.|++|++.-.
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg 47 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGAVITQIRLEHD 47 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHHHHT
T ss_pred eEEEEECHHHhhhcCCCCchhHHHHHHHHC
Confidence 455566667778899999999999887654
No 34
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.62 E-value=3.7 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEEecCCceeecCCcchHHHHHHHH
Q 026835 47 EIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 47 ~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
++.|-...-|.|||++|+.|++|++.=
T Consensus 13 ~i~VP~~~vG~IIGkgG~tIk~Iqe~T 39 (83)
T 2dgr_A 13 QVRVPYRVVGLVVGPKGATIKRIQQRT 39 (83)
T ss_dssp EEECCHHHHHHHHTTTTSSHHHHHHHT
T ss_pred EEEeChHHeeeeECCCchHHHHHHHHh
Confidence 344444566789999999999987763
No 35
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=43.30 E-value=55 Score=23.72 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=27.7
Q ss_pred eEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHh---CCCCCeeEEEE
Q 026835 37 VEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF---KFPENSVELYA 88 (232)
Q Consensus 37 ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~---~~~~~~v~I~v 88 (232)
|.|+|....++|.|.+.- |++++.--..|++.+ |- .+++|.+
T Consensus 10 ikiqrdgqeieidirvst--------gkeleralqelekalaraga--rnvqiti 54 (96)
T 2jvf_A 10 IKIQRDGQEIEIDIRVST--------GKELERALQELEKALARAGA--RNVQITI 54 (96)
T ss_dssp EEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHTC--SEEEEEE
T ss_pred EEEeeCCeEEEEEEEEcc--------cHHHHHHHHHHHHHHHhccc--cceEEEE
Confidence 678898889999888865 555554444444433 32 6777665
No 36
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=43.30 E-value=5.7 Score=28.97 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=24.1
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHHHHHhCC
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~ 79 (232)
..+.|-..+-+.|||++|+.|++|++.-.-...+
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i 52 (94)
T 2cte_A 19 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQI 52 (94)
T ss_dssp EEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBC
T ss_pred EEEEEChHHeeeeECCCChhHHHHHHHHCCEEEe
Confidence 4445555677889999999999988765433333
No 37
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.30 E-value=4.7 Score=30.21 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCceeecCCcchHHHHHHH
Q 026835 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 43 ~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
|....+.|-..+-+.|||++|+.|++|++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~ee 45 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDE 45 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHH
Confidence 344556666677788999999999887765
No 38
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.37 E-value=8.1 Score=28.39 Aligned_cols=30 Identities=13% Similarity=0.428 Sum_probs=23.3
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
...+.|-..+-+.|||++|+.|++|++.-.
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg 47 (95)
T 2ctm_A 18 SEDVPLDHRVHARIIGARGKAIRKIMDEFK 47 (95)
T ss_dssp CEEEECCTTTHHHHHCSSSCHHHHHHHHHT
T ss_pred EEEEEECHHHccccCCCCcchHHHHHHHHC
Confidence 455566667788999999999998877644
No 39
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.12 E-value=21 Score=34.32 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=41.4
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHh
Q 026835 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (232)
Q Consensus 19 ~~Ire~i~~~~-~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~ 77 (232)
.+|++-+.+.+ .++.+++||.+- -+|.||+..|..+.. ++.-+++|-+.|+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 61 (636)
T 2ycb_A 7 EEIKRTIMQRLPERVQVAKVEFEG----PEVVIYTKNPEIITE-NGNLIRDIAKDIRKRI 61 (636)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEEET----TEEEEEESCTHHHHS-CTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CEEEEEeCCHHHhhc-ccHHHHHHHHHhhceE
Confidence 56888888888 678999999875 578999999998763 4566777777776643
No 40
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=36.27 E-value=1.4e+02 Score=24.36 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=38.3
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 28 ~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++++..+|+|..
T Consensus 85 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 133 (159)
T 1t0a_A 85 LAKAKGFE-------LGNLDVTIIAQAPKM-----APHIEDMRQVLAADLNADVADINVKA 133 (159)
T ss_dssp HHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcC-----hHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 45667765 236777889999977 78899999999999998766777654
No 41
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=35.89 E-value=21 Score=34.54 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=37.5
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHh
Q 026835 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (232)
Q Consensus 19 ~~Ire~i~~~~-~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~ 77 (232)
.+|++-+.+.+ .++.+++||.+- -+|.||+..|..+.. ++.-+++|-+.|+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 70 (651)
T 3af5_A 16 RDIRAVVNQMVPKEAKITEIEFEG----PELVIYVKNPEAIMK-DGELIKDLAKVLKKRI 70 (651)
T ss_dssp HHHHHHHTTTSCTTSCEEEEEECS----SSEEEEESSCC------CCSHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CeEEEEeCCHHHhhc-ccHHHHHHHHHhhceE
Confidence 45777777787 578899998864 568899999998874 4566777777777644
No 42
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=33.82 E-value=1.4e+02 Score=24.26 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=37.9
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 28 ~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++++..+|+|..
T Consensus 84 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 132 (160)
T 1gx1_A 84 RIQAKGYT-------LGNVDVTIIAQAPKM-----LPHIPQMRVFIAEDLGCHMDDVNVKA 132 (160)
T ss_dssp HHHHTTCE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcc-----hHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 45566764 235677888999977 78899999999999998766777654
No 43
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=33.35 E-value=10 Score=30.15 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.8
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
.+++.|....-|.+||++|+.|++|++.-.
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg 36 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKETG 36 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHhC
Confidence 355666777888999999999998877643
No 44
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=33.05 E-value=1.6e+02 Score=24.55 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=38.6
Q ss_pred hhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 27 ~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
+.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++++..+|+|..
T Consensus 105 ~lv~~~G~~-------I~NvD~tIiaq~PKl-----~p~~~~mr~~la~~L~i~~~~VnVKA 154 (183)
T 3f0d_A 105 SRVAQAGFA-------IRNVDSTIIAQAPKL-----APHIDAMRANIAADLDLPLDRVNVKA 154 (183)
T ss_dssp HHHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHcCCE-------EEEEEEEEEcCCCcc-----hhHHHHHHHHHHHHHCCCcceEEEEE
Confidence 455667765 235777889999976 67899999999999998766777654
No 45
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=32.49 E-value=8.4 Score=30.06 Aligned_cols=30 Identities=10% Similarity=0.432 Sum_probs=23.4
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
.+++.|....-|.+||++|+.|++|++.-.
T Consensus 6 ~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg 35 (160)
T 2jzx_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREESG 35 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHHHC
Confidence 456666677888999999999988777643
No 46
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=32.22 E-value=12 Score=29.04 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
.++.|-...-|.+||++|+.|++|++.-
T Consensus 4 ~~~~Vp~~~~g~iIGk~G~~Ik~i~~~t 31 (164)
T 2jvz_A 4 QEIMIPAGKAGLVIGKGGETIKQLQERA 31 (164)
T ss_dssp EEEEECTTCHHHHTCTTTHHHHHHHHTS
T ss_pred EEEEechhheeEEECCChHHHHHHHHHh
Confidence 3455566778889999999998877653
No 47
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=31.50 E-value=36 Score=22.25 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026835 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (232)
Q Consensus 62 ~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~ 93 (232)
+.+-++.+.+.+.+.++.+...+.|.+.++..
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~ 46 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHEPPA 46 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEECCCG
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEEeCH
Confidence 44556888999999999988899998888754
No 48
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=30.07 E-value=20 Score=34.66 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=40.6
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHh
Q 026835 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (232)
Q Consensus 19 ~~Ire~i~~~~-~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~ 77 (232)
.+|++-+.+.+ .++.+++||.+- -+|.||+..|..+.. ++.-+++|-+.|+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 65 (640)
T 2xr1_A 11 LDLKHKIEKNLPAGVTITDVEFEG----PQLVLYTEEPRKFAD-DGNIIRNLAKELRTRI 65 (640)
T ss_dssp HHHHHHHHHHSCTTCCCCCEEEET----TEEEEEESCHHHHHH-CTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CEEEEEeCCHHHhcc-ccHHHHHHHHHhhceE
Confidence 46788888888 678999999875 578999999998763 4456677777666643
No 49
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=29.73 E-value=1.1e+02 Score=24.79 Aligned_cols=49 Identities=12% Similarity=0.327 Sum_probs=37.7
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 28 ~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++++..+|+|..
T Consensus 83 ~~~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 131 (152)
T 1iv3_A 83 LVEARGAK-------LLQASLVLTLDRPKL-----GPHRKALVDSLSRLMRLPQDRIGLTF 131 (152)
T ss_dssp HHHHTTCC-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEecCCcC-----HHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 44556654 235677889999977 77899999999999998766777654
No 50
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=29.59 E-value=13 Score=29.53 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=22.7
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.+++.|....-|.+||++|+.|++|++.
T Consensus 105 ~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 105 QVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 5677777788899999999999887654
No 51
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=29.55 E-value=17 Score=28.78 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=22.4
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.+++.|-...-|.|||++|+.|++|++.
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 4566777778889999999999887655
No 52
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=28.63 E-value=20 Score=27.97 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=22.4
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
.++.|-...-|.+||++|+.|++|++.-
T Consensus 87 ~~i~vp~~~~g~iIGkgG~~I~~i~~~t 114 (163)
T 3krm_A 87 THIRVPASAAGRVIGKGGKTVNELQNLT 114 (163)
T ss_dssp EEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEcChhheeeEEcCCChHHHHHHHHh
Confidence 4566677788899999999998887654
No 53
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=27.71 E-value=1.5e+02 Score=24.70 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=37.7
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 28 ~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+...||.= .++.++|-+.+|.+ +..+.++++.|.+.++++..+|+|..
T Consensus 111 l~~~~Gy~I-------~NvD~tiiaq~PKi-----~p~~~~m~~nia~~L~i~~~~VnVKA 159 (187)
T 3b6n_A 111 LLYKRNYAI-------ANVDIIVIAEVPKI-----SPIREEIVRNISSALGISESQVSLKG 159 (187)
T ss_dssp HHHHTTEEE-------EEEEEEEECSSSCS-----HHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHcCCEE-------EEEEEEEEeCCCcc-----hHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 555667652 35677889999976 67889999999999998766777654
No 54
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=27.56 E-value=1.2e+02 Score=24.67 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 28 ~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++++..+|+|..
T Consensus 86 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 134 (160)
T 2pmp_A 86 LMDEAGYE-------IGNLDATLILQRPKI-----SPHKETIRSNLSKLLGADPSVVNLKA 134 (160)
T ss_dssp HHHHHTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEecCCcC-----HHHHHHHHHHHHHHHCCCcceEEEEE
Confidence 44556665 235777889999977 78899999999999998766777654
No 55
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=26.74 E-value=16 Score=28.99 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.5
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
+++.|-...-|.+||++|+.|++|++.-
T Consensus 5 ~~~~vp~~~vg~iIGkgG~~Ik~i~~~t 32 (174)
T 1j4w_A 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDA 32 (174)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEChhheeeeecCCchHHHHHHHHh
Confidence 4566667788899999999998877764
No 56
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=26.65 E-value=14 Score=28.71 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 44 ~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
...++.|-...-|.+||++|+.|++|++.-.
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tg 119 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTG 119 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHS
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhC
Confidence 3556666677788999999999988877643
No 57
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=26.65 E-value=1.3e+02 Score=24.62 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=38.1
Q ss_pred hhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 27 ~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
+.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++++..+|+|..
T Consensus 88 ~~v~~~G~~-------i~NvD~tii~q~PKl-----~p~~~~m~~~la~~L~~~~~~V~vKA 137 (162)
T 3re3_A 88 KMLDKKQYS-------ISNIDCTIIAQAPKM-----LPHIEKMRACLANILEIQISQINIKA 137 (162)
T ss_dssp HHHHHTTCE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred HHHHHcCCE-------EEEEEEEEEcCCCcc-----hhHHHHHHHHHHHHHCCCCceEEEEE
Confidence 355566765 235677889999976 67899999999999998766777654
No 58
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=25.99 E-value=74 Score=20.92 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHhCCCCCeeEEEEEEecCC
Q 026835 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNR 94 (232)
Q Consensus 63 g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~p 94 (232)
.+-++.+.+.|.+.++.+...+.|.+.++...
T Consensus 20 ~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~ 51 (67)
T 3m21_A 20 QQLIEGVSDLMVKVLNKNKASIVVIIDEVDSN 51 (67)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHCcCcccEEEEEEEeCHH
Confidence 44568888889999999888999999988653
No 59
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=25.69 E-value=1.4e+02 Score=25.12 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=42.9
Q ss_pred hHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCcee-ecCCcchHHHHHHHHHHHhCCCCCeeEEEEEE
Q 026835 18 FAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNV-LGEKGRRIRELTSVVQKRFKFPENSVELYAEK 90 (232)
Q Consensus 18 ~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~i-IG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~e 90 (232)
..+|++.+.+.-.-.++.++.+.+......+.+|..-|... +..-.+-.+++++.|++.++. ..+.|.++.
T Consensus 208 ~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~v~ih~ep 279 (283)
T 3h90_A 208 RQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SDVIIHQDP 279 (283)
T ss_dssp HHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CEEEEEEEC
T ss_pred HHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--CeEEEEecc
Confidence 34567766653222457777787777778888888766532 111123346777777777763 566666653
No 60
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.03 E-value=72 Score=30.58 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEEEEecCCCcCh
Q 026835 20 ELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA 98 (232)
Q Consensus 20 ~Ire~i~~~~~-~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~p~~~a 98 (232)
+-+++|.+... .||+.+|.. .++.-+|.+++.+||+++|+.|..++++ .+..+.. . ..+..|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~g~~~~~~~~i----~~~~~~~---~----~~~~~p~~~~ 141 (636)
T 2ycb_A 75 KAIRKIHEIVPEEAKITNISF--DDVTCEVIIEARKPGLVIGKYGSTSREI----VKNTGWA---P----KILRTPPISS 141 (636)
T ss_dssp HHHHHHHHTSCSTTCEEEEEE--ETTTTEEEEEESCTHHHHCTTSHHHHHH----HHHHCCE---E----EEEECCSSCC
T ss_pred HHHHHHHHhCCCccCccceEe--cCCCceEEEEECCCCccccccchhHHHH----hhccCCc---c----ceeecCCcch
Confidence 45666666553 578876544 5567788999999999999987655544 3445531 1 1223555555
Q ss_pred HHHHHHHHH
Q 026835 99 IAQAESLRY 107 (232)
Q Consensus 99 ~~iA~~Ia~ 107 (232)
..+..-.+.
T Consensus 142 ~~~~~i~~~ 150 (636)
T 2ycb_A 142 EIIERIRRT 150 (636)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555544433
No 61
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=24.39 E-value=1.1e+02 Score=23.35 Aligned_cols=33 Identities=3% Similarity=0.153 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhhhccCCeeeeEEEEc---CCeEEEE
Q 026835 17 FFAELNEVLTRELAEDGYSGVEVRVT---PVRTEII 49 (232)
Q Consensus 17 ~~~~Ire~i~~~~~~agis~ieI~rt---~~~i~I~ 49 (232)
.-+.+++|+.+.|.++.+..+++.+. ....+|.
T Consensus 13 LP~~~~~fi~~~fp~~~i~~v~~e~~~~~~~~YeV~ 48 (128)
T 3elg_A 13 LPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVK 48 (128)
T ss_dssp SCHHHHHHHHHHCTTSCEEEEEEEECTTCCEEEEEE
T ss_pred CCHHHHHHHHHHCCCCceEEEEEEcccCcCceEEEE
Confidence 34569999999999999999999997 2345444
No 62
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=24.38 E-value=82 Score=30.34 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=35.5
Q ss_pred HHHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHH
Q 026835 20 ELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71 (232)
Q Consensus 20 ~Ire~i~~~~~-~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~ 71 (232)
+-+++|.+... .||+.+|.. .++.-+|.+++.+|++++|+.|..++++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 134 (651)
T 3af5_A 84 EAEKLIFEIVPKEAEITNIAF--DPSVGEVLIEAKKPGLVIGKNGETLRLITQ 134 (651)
T ss_dssp HHHHHHHHHSCGGGCCCEEEE--ETTTTEEEEEESSTTTTSCTTSHHHHHHHH
T ss_pred HHHHHHHHhCCCccCccceee--cCCCceEEEEECCCCccccccchhHHHHhh
Confidence 35566666553 578876544 566778899999999999998766655443
No 63
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=23.96 E-value=15 Score=28.42 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=21.9
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
+++.|....-|.+||++|+.|++|++.
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEChhhccccCCCCcHhHHHHHHH
Confidence 566677778899999999999887755
No 64
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=23.32 E-value=75 Score=30.57 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=36.1
Q ss_pred HHHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHH
Q 026835 20 ELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71 (232)
Q Consensus 20 ~Ire~i~~~~~-~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~ 71 (232)
+-+++|.+... .||+.+| .-.++.-+|.+++.+|++++|+.|..++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 129 (640)
T 2xr1_A 79 DSISIIEEVVPKESVISSY--YFDPDSGEVIIEAEKPGLVIGKHGATLREITK 129 (640)
T ss_dssp HHHHHHHHHSCGGGCEEEE--EECTTTSEEEEEESSHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCccCccce--eecCCCceEEEEeCCCCcccccchhhHHHHHh
Confidence 45666666553 5788754 45566788999999999999999766655443
No 65
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=23.02 E-value=2.3e+02 Score=21.40 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=28.3
Q ss_pred cchHHHHHHHHHHHhCCCCCeeEE--------EEEEecCCCcChHHHH
Q 026835 63 GRRIRELTSVVQKRFKFPENSVEL--------YAEKVNNRGLCAIAQA 102 (232)
Q Consensus 63 g~~i~~l~~~L~k~~~~~~~~v~I--------~v~ev~~p~~~a~~iA 102 (232)
|+-=+.|.+.|.+.|+++..+|.| ....|..|...+.-+.
T Consensus 49 GkAN~ali~~LAk~l~V~ks~V~Iv~G~tSR~K~v~I~~~~~~~~~i~ 96 (108)
T 1n91_A 49 GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEVA 96 (108)
T ss_dssp HHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEEEEESCCCCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCccceEEEEecCCCCccEEEEeCCcCCHHHHH
Confidence 444589999999999998766664 3456667766665443
No 66
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=21.99 E-value=86 Score=20.94 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026835 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (232)
Q Consensus 63 g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~ 93 (232)
.+-++.+.+.+.+.++.+...+.|.+.++..
T Consensus 18 ~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~ 48 (72)
T 3mb2_A 18 AELARALSAAAAAAFDVPLAEVRLIIQEVPP 48 (72)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEEEECG
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 4456788888889999988899999988864
No 67
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=21.65 E-value=1.1e+02 Score=26.61 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=42.4
Q ss_pred cChHHHHHHHHhhhcc--CCeeeeE-EEEcC-CeEEEEEEecCCce-----eecCCcchHHHHHHHHH
Q 026835 16 VFFAELNEVLTRELAE--DGYSGVE-VRVTP-VRTEIIIRATRTQN-----VLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 16 ~~~~~Ire~i~~~~~~--agis~ie-I~rt~-~~i~I~I~~~rPg~-----iIG~~g~~i~~l~~~L~ 74 (232)
.....++++|+.+... .|.-.|. |-|.| .+++|-+++..|+. -||.+|.+++.+.+.|.
T Consensus 80 t~p~lvk~Lfe~EVPEI~dG~veI~~iaRe~G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~ 147 (251)
T 2asb_A 80 THPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS 147 (251)
T ss_dssp SCHHHHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcchHhhcCeEEEEEEecCCCceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhC
Confidence 3344588888887765 3433332 56664 79999999998875 89999999988766653
No 68
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.45 E-value=23 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.357 Sum_probs=17.9
Q ss_pred EEecCCceeecCCcchHHHHHHH
Q 026835 50 IRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 50 I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
|-....+.+||++|+.|++|++.
T Consensus 33 vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 33 APSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp CCSTTHHHHHTTTTCHHHHHHHH
T ss_pred eCHHHHhhhcCCCCccHHHHHHH
Confidence 33345557999999999998886
No 69
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.25 E-value=1.5e+02 Score=21.98 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=34.7
Q ss_pred hhhccCCeeeeEEEEcCC---eEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEE
Q 026835 27 RELAEDGYSGVEVRVTPV---RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY 87 (232)
Q Consensus 27 ~~~~~agis~ieI~rt~~---~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~ 87 (232)
++|..-|++.+.|..... .-.+.+-+. -...+.+|++.|+..++++..+..+.
T Consensus 8 ~~f~~tg~ati~V~~~~~~~~~~~~~lev~--------~~~TV~~lK~kI~~k~gip~~qQrLI 63 (100)
T 1wju_A 8 DNYRTTGIATIEVFLPPRLKKDRKNLLETR--------LHITGRELRSKIAETFGLQENYIKIV 63 (100)
T ss_dssp CSSSCCCEEEEEEECCTTTCCSSSEEEEEE--------SSSBHHHHHHHHHHHTTCCSTTCEEE
T ss_pred hhhhhcceEEEEEEecCCCCCCcEEEEEeC--------CcCHHHHHHHHHHHHHCcCHHHeEEE
Confidence 467788898888865331 222232222 15678999999999999876655543
No 70
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.23 E-value=1.2e+02 Score=19.26 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026835 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (232)
Q Consensus 63 g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~ 93 (232)
.+-++.|.+.|.+.++.+...+.|.+.++..
T Consensus 18 ~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~ 48 (64)
T 3abf_A 18 RELVRRLTEMASRLLGEPYEEVRVILYEVRR 48 (64)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEEEECG
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 3456888899999999888899999988764
No 71
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=21.10 E-value=30 Score=27.03 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=20.9
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
..|.+-...-+.+||++|+.++.+++.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 566666677789999999998776554
No 72
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=20.26 E-value=93 Score=23.20 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=33.4
Q ss_pred EcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026835 41 VTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (232)
Q Consensus 41 rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~ 93 (232)
|+..-+.|.|. .+|.=...|.+-++.+.+.|.+.++.+...+.|.+.++..
T Consensus 62 ~~~~~~~I~i~--~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~ 112 (131)
T 2aal_A 62 RSSAVVLLTVI--SRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSD 112 (131)
T ss_dssp CCTTCEEEEEE--ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCG
T ss_pred CCCCeEEEEEE--eCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCH
Confidence 33344455554 2332222234456888889999999988899999998864
Done!