Query 026835
Match_columns 232
No_of_seqs 140 out of 1105
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 23:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026835.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026835hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qalc2 d.53.1.1 (C:106-206) R 100.0 5.7E-40 4.2E-44 253.8 8.8 97 92-191 1-99 (101)
2 d2uubc2 d.53.1.1 (C:107-207) R 100.0 1.8E-38 1.3E-42 245.3 12.1 97 92-191 1-99 (101)
3 d1wh9a_ d.52.3.1 (A:) Ribosoma 99.8 1.1E-21 8.3E-26 148.3 8.7 84 16-99 7-90 (92)
4 d2uubc1 d.52.3.1 (C:2-106) Rib 99.8 1.8E-21 1.3E-25 150.4 2.2 83 6-91 16-105 (105)
5 d2qalc1 d.52.3.1 (C:1-105) Rib 99.8 9.5E-21 6.9E-25 146.3 1.9 83 6-91 16-105 (105)
6 d1wf3a2 d.52.3.1 (A:181-298) G 86.5 2.1 0.00015 31.4 8.8 70 21-93 17-102 (118)
7 d1egaa2 d.52.3.1 (A:183-295) G 85.2 1.3 9.1E-05 32.4 6.9 46 45-93 48-101 (113)
8 d1tuaa1 d.51.1.1 (A:1-84) Hypo 81.1 0.24 1.8E-05 34.7 1.2 74 46-119 5-79 (84)
9 d2asba3 d.52.3.1 (A:263-329) T 69.6 2.4 0.00018 28.2 3.9 53 22-78 3-56 (67)
10 d1hh2p3 d.52.3.1 (P:277-344) T 66.4 2.4 0.00017 28.4 3.3 47 21-67 3-50 (68)
11 d1zzka1 d.51.1.1 (A:11-85) HnR 64.6 1.6 0.00012 28.6 2.1 27 46-72 6-32 (75)
12 d2asba2 d.52.3.1 (A:184-262) T 64.3 2.6 0.00019 29.1 3.3 54 21-74 6-68 (79)
13 d1dtja_ d.51.1.1 (A:) Neuro-on 63.0 1.3 9.2E-05 29.3 1.3 27 46-72 5-31 (74)
14 d2axya1 d.51.1.1 (A:11-81) Pol 62.4 0.8 5.8E-05 30.2 0.2 30 45-74 5-34 (71)
15 d1iv3a_ d.79.5.1 (A:) 2C-methy 61.6 12 0.00089 28.2 7.1 49 28-88 82-130 (150)
16 d1hh2p2 d.52.3.1 (P:199-276) T 60.1 4.1 0.0003 28.0 3.6 54 21-74 6-68 (78)
17 d1w55a2 d.79.5.1 (A:208-370) I 60.1 15 0.0011 28.0 7.6 56 21-88 78-133 (163)
18 d1t0aa_ d.79.5.1 (A:) 2C-methy 59.1 17 0.0012 27.7 7.6 51 26-88 82-132 (158)
19 d1gx1a_ d.79.5.1 (A:) 2C-methy 58.9 15 0.0011 27.9 7.3 51 26-88 82-132 (157)
20 d1j4wa1 d.51.1.1 (A:1-74) Far 57.1 1.1 8.2E-05 29.5 0.2 27 46-72 5-31 (74)
21 d1j4wa2 d.51.1.1 (A:104-174) F 56.2 1.9 0.00014 28.1 1.3 27 46-72 3-29 (71)
22 d1viga_ d.51.1.1 (A:) Vigilin 54.7 1.6 0.00012 28.6 0.7 28 46-73 7-34 (71)
23 d1wvna1 d.51.1.1 (A:5-74) Poly 51.7 2.2 0.00016 27.8 1.0 28 46-73 4-31 (70)
24 d1e3ha4 d.52.3.1 (A:579-632) P 49.7 1.5 0.00011 28.0 -0.1 27 46-72 5-31 (54)
25 d2ctla1 d.51.1.1 (A:8-91) Vigi 49.1 2.7 0.0002 28.2 1.1 30 45-74 11-40 (84)
26 d1we8a_ d.51.1.1 (A:) Tudor an 46.8 2.7 0.00019 29.4 0.8 30 45-74 16-45 (104)
27 d2ctea1 d.51.1.1 (A:8-88) Vigi 46.5 3 0.00022 27.8 1.0 33 46-78 12-44 (81)
28 d1x4ma1 d.51.1.1 (A:8-88) Far 40.5 3 0.00022 27.8 0.2 27 47-73 11-37 (81)
29 d1x4na1 d.51.1.1 (A:8-86) Far 35.1 5 0.00036 26.4 0.6 26 47-72 11-36 (79)
30 d2ctja1 d.51.1.1 (A:8-89) Vigi 31.9 3.7 0.00027 27.3 -0.5 21 53-73 19-39 (82)
31 d2ctka1 d.51.1.1 (A:8-98) Vigi 31.4 3.5 0.00025 28.1 -0.7 28 46-73 12-39 (91)
32 d2cpqa1 d.51.1.1 (A:212-289) F 30.2 2.4 0.00018 28.6 -1.7 25 47-71 11-35 (78)
33 d1otfa_ d.80.1.1 (A:) 4-oxaloc 29.9 22 0.0016 21.9 3.2 32 62-93 16-47 (59)
34 d2ctma1 d.51.1.1 (A:8-88) Vigi 28.4 6 0.00043 26.3 0.1 26 48-73 14-39 (81)
35 d2z0sa2 d.51.1.1 (A:148-234) E 28.4 61 0.0044 21.9 5.7 60 48-114 5-67 (87)
36 d1yh5a1 d.206.1.1 (A:1-100) Hy 28.3 67 0.0049 22.2 6.0 58 39-96 8-90 (100)
37 d2ba0a3 d.51.1.1 (A:136-219) E 27.4 5.2 0.00038 27.2 -0.4 27 48-74 5-31 (84)
38 d2je6i3 d.51.1.1 (I:153-221) E 26.8 3.4 0.00025 27.1 -1.4 23 50-72 7-29 (69)
39 d2ctfa1 d.51.1.1 (A:7-96) Vigi 26.1 8 0.00058 26.3 0.4 29 44-72 19-49 (90)
40 d1mwwa_ d.80.1.4 (A:) Hypothet 21.5 41 0.003 23.2 3.8 52 41-93 55-106 (120)
41 d1s0ya_ d.80.1.1 (A:) Trans-3- 21.2 39 0.0028 20.8 3.2 33 61-93 15-47 (62)
42 d2aala1 d.80.1.6 (A:1-129) Mal 20.2 43 0.0031 23.8 3.7 53 40-94 60-112 (129)
43 d1hsta_ a.4.5.13 (A:) Histone 20.1 64 0.0047 20.8 4.3 44 95-141 21-64 (74)
No 1
>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.7e-40 Score=253.78 Aligned_cols=97 Identities=29% Similarity=0.360 Sum_probs=95.6
Q ss_pred cCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEccccccc-ceeeeeeecCee-eeccccccccee
Q 026835 92 NNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM-ISSGQPVNEYID 169 (232)
Q Consensus 92 ~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v-l~tG~~~~~~Id 169 (232)
++|++||+++|++||+|||++++|||+++++++++|++||+||+|+|||||||+ |||+|+|++|++ ||| ++++||
T Consensus 1 k~P~l~A~~vA~~IA~~LErr~~fRr~~~~~i~~~m~~ga~GikI~isGRl~gae~Ar~e~~~~G~ipl~t---~~~~Id 77 (101)
T d2qalc2 1 RKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHT---LRADID 77 (101)
T ss_dssp SCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEEECSCGGGCSSCCCCCCEEECCCTTC---GGGCEE
T ss_pred CCCCcCHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhcchheEEEEEeccccchhhheeEEEEEecccccc---cceeEE
Confidence 589999999999999999999999999999999999999999999999999999 999999999999 999 999999
Q ss_pred EEEEEEecCCeeeeEEEEEEcC
Q 026835 170 SAVRHVLLRQGVLGIKVKIMLE 191 (232)
Q Consensus 170 ya~~~a~Tk~GviGIKVWI~~~ 191 (232)
|++++|+|+||++|||||||+|
T Consensus 78 y~~~~a~t~~Gv~GVKVwI~~~ 99 (101)
T d2qalc2 78 YNTSEAHTTYGVIGVKVWIFKG 99 (101)
T ss_dssp EEECCCCBTTBCCCEEEEEECC
T ss_pred EEEEEEEcCceeEEEEEEEECC
Confidence 9999999999999999999998
No 2
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.8e-38 Score=245.34 Aligned_cols=97 Identities=33% Similarity=0.434 Sum_probs=95.4
Q ss_pred cCCCcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEccccccc-ceeeeeeecCee-eeccccccccee
Q 026835 92 NNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM-ISSGQPVNEYID 169 (232)
Q Consensus 92 ~~p~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v-l~tG~~~~~~Id 169 (232)
+||++||+++|++||++||+|++|||+++++++++|++||+||+|+|||||+|+ |||+|++.+|.+ +|| ++++||
T Consensus 1 ~nP~l~A~~vA~~Ia~~Ler~~~fRra~~~~l~~~m~~ga~GikI~isGrl~g~~~ar~~~~~~G~~~~~t---~~~~Id 77 (101)
T d2uubc2 1 QNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHT---LRANID 77 (101)
T ss_dssp SSTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEEEEESGGGCSSCEEEEEEEECCCTTC---TTSCEE
T ss_pred CCCccCHHHHHHHHHHHHHccchHHHHHHHHHHHhhhcCccEEEEEEecccCCccceeEEEEEeeeecCcc---eeccee
Confidence 589999999999999999999999999999999999999999999999999999 999999999999 998 999999
Q ss_pred EEEEEEecCCeeeeEEEEEEcC
Q 026835 170 SAVRHVLLRQGVLGIKVKIMLE 191 (232)
Q Consensus 170 ya~~~a~Tk~GviGIKVWI~~~ 191 (232)
|++.+|+|+||++|||||||+|
T Consensus 78 y~~~~a~tk~GviGVKVwI~~~ 99 (101)
T d2uubc2 78 YGFALARTTYGVLGVKAYIFLG 99 (101)
T ss_dssp EEEEEEECSSCEEEEEEEEECC
T ss_pred EEEEEEEcCCccEEEEEEEECC
Confidence 9999999999999999999987
No 3
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.85 E-value=1.1e-21 Score=148.30 Aligned_cols=84 Identities=83% Similarity=1.096 Sum_probs=81.3
Q ss_pred cChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEEEEecCCC
Q 026835 16 VFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95 (232)
Q Consensus 16 ~~~~~Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~p~ 95 (232)
.++++|||||.++|.+||||+|+|+|++++++|+||++|||+|||++|++|++|++.|+++|++++.+++|++.+|.+-.
T Consensus 7 ~f~a~Ire~l~k~l~~Agis~ieI~Rt~~~i~I~I~tarPGivIGrkG~~I~~L~~~l~k~~~~~~~~i~lnae~Ia~r~ 86 (92)
T d1wh9a_ 7 GFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRG 86 (92)
T ss_dssp SHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCSC
T ss_pred cHHHHHHHHHHHHHHhCCcceEEEEECCCeEEEEEEeCCCceeeccCchhHHHHHHHHHHHHCCCCCcEEEEEEeecccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChH
Q 026835 96 LCAI 99 (232)
Q Consensus 96 ~~a~ 99 (232)
|||.
T Consensus 87 l~~~ 90 (92)
T d1wh9a_ 87 SGPS 90 (92)
T ss_dssp CCSC
T ss_pred CCcc
Confidence 9973
No 4
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.81 E-value=1.8e-21 Score=150.36 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=77.7
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
+|+|+|||++.+|++ ||+||.++|.+||||+|+|+|+++.++|+|||+|||++||++|+++++|++.|++.++
T Consensus 16 ~w~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~~agIs~IeIeR~~~~i~I~I~tarPG~iIGkkG~~i~~L~~~l~k~~~ 95 (105)
T d2uubc1 16 DWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 95 (105)
T ss_dssp CCSCBCCCCTTTTTHHHHHHHHHHHHHHHSTTTTTEEEECCEESSSCEECCEEESCHHHHHCSTTSHHHHHHHHHHHHSS
T ss_pred CCCceEcCChhhhHHHHHHHHHHHHHHHhhccccCcceEEEEEccCcEEEEEEECCCceEEcCCchhHHHHHHHHHHHhC
Confidence 599999999999985 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEe
Q 026835 79 FPENSVELYAEKV 91 (232)
Q Consensus 79 ~~~~~v~I~v~ev 91 (232)
+++.|+|.||
T Consensus 96 ---k~v~inI~EV 105 (105)
T d2uubc1 96 ---KNVALNVQEV 105 (105)
T ss_dssp ---CCCCCCCCBC
T ss_pred ---CCceEEEEEC
Confidence 6777777664
No 5
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.78 E-value=9.5e-21 Score=146.30 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=78.4
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
+|+|.|||++.+|+. ||+||.++|.+||||+|+|+|+++.+.|+|||++||++||++|+++++|++.|++.++
T Consensus 16 ~~~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~~a~Is~IeIeR~~~~i~V~I~tarPGviIG~~G~~i~~L~~~l~k~~~ 95 (105)
T d2qalc1 16 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95 (105)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEEECCCCSSCBCCEEEESCHHHHHCTTSHHHHHHHHHHHHHHT
T ss_pred CCCCEEcCCccchHHHHHHHHHHHHHHHHHHHhcccceEEEEecCCcEEEEEEeCCCccEeccCcccHHHHHHHHHHHhC
Confidence 599999999999985 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEe
Q 026835 79 FPENSVELYAEKV 91 (232)
Q Consensus 79 ~~~~~v~I~v~ev 91 (232)
.++.|+|.||
T Consensus 96 ---~~v~inI~EV 105 (105)
T d2qalc1 96 ---VPAQINIAEV 105 (105)
T ss_dssp ---SCBCCEEECC
T ss_pred ---CCceEEEEEC
Confidence 5788888775
No 6
>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=86.48 E-value=2.1 Score=31.44 Aligned_cols=70 Identities=24% Similarity=0.230 Sum_probs=45.4
Q ss_pred HHHHHHhhhcc-----CCeeeeEEE-EcC--CeEEEEEEecCCc---eeecCCcchHH----HHHHHHHHHhCCCCCeeE
Q 026835 21 LNEVLTRELAE-----DGYSGVEVR-VTP--VRTEIIIRATRTQ---NVLGEKGRRIR----ELTSVVQKRFKFPENSVE 85 (232)
Q Consensus 21 Ire~i~~~~~~-----agis~ieI~-rt~--~~i~I~I~~~rPg---~iIG~~g~~i~----~l~~~L~k~~~~~~~~v~ 85 (232)
|||-+...|.. ..+.-.+.. +.. ..+..+|++.+.+ ++||++|+.|+ +-+..|++.|+ .+|.
T Consensus 17 IREkil~~l~~EiPY~~~v~ie~~~e~~~~~l~I~~~I~V~~~sqK~IiIGk~G~~ik~Ig~~aR~~le~~~~---~kV~ 93 (118)
T d1wf3a2 17 LREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLG---KKVY 93 (118)
T ss_dssp HHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SEEE
T ss_pred HHHHHHHhcccccCceEEEEEEEeeecCCceEEEEEEEEeCccchhhhhhccCchhHHHHHHHHHHHHHHHhC---CCeE
Confidence 77776665554 222222233 222 3567789998876 59999999998 45667888998 6777
Q ss_pred EEE-EEecC
Q 026835 86 LYA-EKVNN 93 (232)
Q Consensus 86 I~v-~ev~~ 93 (232)
+.+ ++|++
T Consensus 94 L~L~VKV~k 102 (118)
T d1wf3a2 94 LDLEVKVYP 102 (118)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEECC
Confidence 664 34544
No 7
>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=85.22 E-value=1.3 Score=32.39 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=34.2
Q ss_pred eEEEEEEecCCc---eeecCCcchHHHH----HHHHHHHhCCCCCeeEEEE-EEecC
Q 026835 45 RTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA-EKVNN 93 (232)
Q Consensus 45 ~i~I~I~~~rPg---~iIG~~g~~i~~l----~~~L~k~~~~~~~~v~I~v-~ev~~ 93 (232)
.+...||+.+++ ++||++|+.|+++ +..|++.|+ .+|.+.+ ++|++
T Consensus 48 ~I~a~I~V~~~sqk~IiIGk~G~~ik~I~~~ar~~le~~~~---~kV~L~L~VKV~~ 101 (113)
T d1egaa2 48 DINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFE---APVHLELWVKVKS 101 (113)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTT---SCEEEEEEEEETT
T ss_pred EEEEEEEECCcchhhhhhcccchHHHHHHHHHHHHHHHHhC---CCeEEEEEEEECC
Confidence 477889999887 5999999999766 456777887 6776664 33443
No 8
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=81.06 E-value=0.24 Score=34.70 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=42.2
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEEEEec-CCCcChHHHHHHHHHHHhCCccchhhh
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVN-NRGLCAIAQAESLRYKLLGGLAVRRAC 119 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~-~p~~~a~~iA~~Ia~~Lekr~~fRr~~ 119 (232)
+.|.|-..+-|.|||++|+.|++|++.-.-...+....-.+.+.-.. .....|...|..+..++.++.+--+++
T Consensus 5 i~i~ip~~~ig~vIG~gG~~Ik~i~~~tg~~I~Id~d~g~v~i~~~~~~~~~~a~~~a~~iI~aI~rGf~Pe~a~ 79 (84)
T d1tuaa1 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAF 79 (84)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHG
T ss_pred EEEEeCHHHcCeeecCCchhHHHHHHHHCCEEEEEcCCCeEEEecCCccccHHHHHHHHHHHHHHhCCCChHHHH
Confidence 45555667788999999998887665433222111111111122111 122345567888888998887655555
No 9
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=69.59 E-value=2.4 Score=28.24 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHhhhccCCeeeeEEE-EcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 22 NEVLTRELAEDGYSGVEVR-VTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 22 re~i~~~~~~agis~ieI~-rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
.+|+.+.|.-|.+.+|+|. .......|++--..-...||++|++++ ...+++|
T Consensus 3 ~~fi~nAL~Pa~v~~V~i~de~~~~~~v~V~~~qls~AIGk~G~Nvr----Las~Ltg 56 (67)
T d2asba3 3 ARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNAR----LAARLTG 56 (67)
T ss_dssp HHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHH----HHHHHHS
T ss_pred HHHHHHhCCCCeeeEEEEecCCCcEEEEEECcccccchhcCCceeHH----HHHHHHC
Confidence 4789999998999999874 334445554444456678999999983 3344555
No 10
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=66.39 E-value=2.4 Score=28.35 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=34.8
Q ss_pred HHHHHHhhhccCCeeeeEEEEc-CCeEEEEEEecCCceeecCCcchHH
Q 026835 21 LNEVLTRELAEDGYSGVEVRVT-PVRTEIIIRATRTQNVLGEKGRRIR 67 (232)
Q Consensus 21 Ire~i~~~~~~agis~ieI~rt-~~~i~I~I~~~rPg~iIG~~g~~i~ 67 (232)
..+|+.+.|.-|.+.+|+|.-. .....|++--..-+..||++|++++
T Consensus 3 p~~fI~nAL~PA~v~~V~i~de~~~~~~v~V~~~qls~AIGk~G~Nvr 50 (68)
T d1hh2p3 3 PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNAR 50 (68)
T ss_dssp HHHHHHHHTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHH
T ss_pred HHHHHHHhCCCCeeeEEEEEcCCCCEEEEEECcccccccccCCcchHH
Confidence 3579999999999999988433 3445555544566679999999983
No 11
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.61 E-value=1.6 Score=28.61 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.+|.|-...-|.|||++|..|++|++.
T Consensus 6 ~~i~VP~~~vg~iIG~~G~~I~~I~~~ 32 (75)
T d1zzka1 6 TQVTIPKDLAGSIIGKGGQRIKQIRHE 32 (75)
T ss_dssp EEEEEETTTGGGGTCGGGHHHHHHHHH
T ss_pred EEEEEChHhcCeeECCCCchHHHHHhh
Confidence 456667778889999999999887765
No 12
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=64.29 E-value=2.6 Score=29.09 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=39.1
Q ss_pred HHHHHHhhhcc--CCeeee-EEEEcC-CeEEEEEEecCCce-----eecCCcchHHHHHHHHH
Q 026835 21 LNEVLTRELAE--DGYSGV-EVRVTP-VRTEIIIRATRTQN-----VLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 21 Ire~i~~~~~~--agis~i-eI~rt~-~~i~I~I~~~rPg~-----iIG~~g~~i~~l~~~L~ 74 (232)
+++.|+.+... .|.-.| .|.|.| .+++|-+++..|+. .+|.+|.+++.+.+.|.
T Consensus 6 v~~Lfe~EVPEI~~G~veI~~iaR~pG~RtKVAV~s~~~~vDpvGacvG~~GsRI~~I~~eL~ 68 (79)
T d2asba2 6 VRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS 68 (79)
T ss_dssp HHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT
T ss_pred HHHHHHhhCccccCCeEEEEEeeccCCceeEEEEEecCCCCCceeEEECCCccHHHHHHHHhC
Confidence 56666665543 333333 366665 79999999998875 89999999999888875
No 13
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.01 E-value=1.3 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.4
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
+++.|-...-|.+||++|+.|++|++.
T Consensus 5 i~i~VP~~~vg~iIGk~G~~Ik~I~~~ 31 (74)
T d1dtja_ 5 VEMAVPENLVGAILGKGGKTLVEYQEL 31 (74)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHHH
T ss_pred EEEEeCHHHcceeECCCChhHHHHHHH
Confidence 456666677788999999999887664
No 14
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.44 E-value=0.8 Score=30.19 Aligned_cols=30 Identities=10% Similarity=0.432 Sum_probs=23.2
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
.+++.+....-|.|||++|+.|++|++.-.
T Consensus 5 t~~i~vp~~~~g~IIGk~G~~I~~I~~~tg 34 (71)
T d2axya1 5 TIRLLMHGKEVGSIIGKKGESVKKMREESG 34 (71)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEECHHHcCeEECCCChhHHHHHHHhC
Confidence 356667777788999999999988776543
No 15
>d1iv3a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Thermus thermophilus [TaxId: 274]}
Probab=61.56 E-value=12 Score=28.22 Aligned_cols=49 Identities=12% Similarity=0.327 Sum_probs=38.1
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 28 ~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+...||. ..++.++|-+.+|.+ ....+++++.|.+.++++..+|+|..
T Consensus 82 ~i~~~g~~-------I~NiD~tIi~e~PKi-----~p~~~~m~~~Ls~lL~i~~~~I~IKA 130 (150)
T d1iv3a_ 82 LVEARGAK-------LLQASLVLTLDRPKL-----GPHRKALVDSLSRLMRLPQDRIGLTF 130 (150)
T ss_dssp HHHHTTCC-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHhhee-------eeechhhhhhhHHHh-----HHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 44566654 246778999999976 67789999999999998777777664
No 16
>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=60.11 E-value=4.1 Score=27.98 Aligned_cols=54 Identities=22% Similarity=0.460 Sum_probs=38.4
Q ss_pred HHHHHHhhhcc--CCeeee-EEEEcC-CeEEEEEEecCCce-----eecCCcchHHHHHHHHH
Q 026835 21 LNEVLTRELAE--DGYSGV-EVRVTP-VRTEIIIRATRTQN-----VLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 21 Ire~i~~~~~~--agis~i-eI~rt~-~~i~I~I~~~rPg~-----iIG~~g~~i~~l~~~L~ 74 (232)
+++.|+.+... .|+-.| .|.|.| .+++|-+++..|+. .+|.+|.+++.+.+.|.
T Consensus 6 v~~Lfe~EVPEI~~G~VeI~~iaR~pG~RtKVAV~s~~~~iDpvGacVG~~G~RI~~I~~eL~ 68 (78)
T d1hh2p2 6 VIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELK 68 (78)
T ss_dssp HHHHHHHHCHHHHHSSEEEEEEEEETTTEEEEEEEESSTTSCHHHHHHCTTSTTHHHHHHHTT
T ss_pred HHHHHHhhCccccCCeEEEEEeecCCCceEEEEEEecCCCCCeeEEEECCCchHHHHHHHHhC
Confidence 55556554443 233222 256664 79999999998875 89999999999888875
No 17
>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=60.05 E-value=15 Score=27.99 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 21 Ire~i~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
+=+...+.+.+.|+. ..++.++|-+.+|.+ +...+++++.|.+.++++..+|+|..
T Consensus 78 ~L~~~~~~l~~~g~~-------I~NID~tIi~e~PKi-----~p~~~~i~~~ls~~L~i~~~~IsIKA 133 (163)
T d1w55a2 78 LLKQAYDKVREIGFE-------LINIDICVMAQSPKL-----KDFKQAMQSNIAHTLDLDEFRINVKA 133 (163)
T ss_dssp HHHHHHHHHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHHHcCCE-------eehhhhhhhhhhhhh-----HHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 333334455666665 236788999999977 67789999999999998767777654
No 18
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Probab=59.12 E-value=17 Score=27.67 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=39.8
Q ss_pred HhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 26 TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 26 ~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+.+.+.||. ..++.++|-+.+|.+ ....+++++.|.+.++++..+|+|..
T Consensus 82 ~~~~~~~g~~-------I~NiD~tIi~e~PKi-----~p~~~~m~~~la~~L~i~~~~IsIKA 132 (158)
T d1t0aa_ 82 YALAKAKGFE-------LGNLDVTIIAQAPKM-----APHIEDMRQVLAADLNADVADINVKA 132 (158)
T ss_dssp HHHHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHcCCE-------Eeeeehhhhhhhhhh-----hHHHHHHHHHHHHHhCCCcccEEEEE
Confidence 4455667765 246778999999977 67889999999999999777777654
No 19
>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Escherichia coli [TaxId: 562]}
Probab=58.94 E-value=15 Score=27.86 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=39.0
Q ss_pred HhhhccCCeeeeEEEEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEE
Q 026835 26 TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (232)
Q Consensus 26 ~~~~~~agis~ieI~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (232)
.+.+.+.||. ..++.++|-+.+|.+ ....+++++.|.+.++++..+|+|..
T Consensus 82 ~~~l~~~g~~-------I~NiD~tIi~e~PKi-----~~~~~~i~~~ls~~L~i~~~~VsIKA 132 (157)
T d1gx1a_ 82 WRRIQAKGYT-------LGNVDVTIIAQAPKM-----LPHIPQMRVFIAEDLGCHMDDVNVKA 132 (157)
T ss_dssp HHHHHHTTCE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHhCCE-------ehhhhhHhHHHHhhh-----HHHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3455666765 346788999999976 67789999999999998766777654
No 20
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.09 E-value=1.1 Score=29.48 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
++|.|-...-|.|||++|..|++|++.
T Consensus 5 ~~i~VP~~~vg~iIGk~G~~I~~I~~~ 31 (74)
T d1j4wa1 5 IDVPIPRFAVGIVIGRNGEMIKKIQND 31 (74)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEeCHHHCCeeECCCCcHHHHHHHH
Confidence 455555566788999999999887654
No 21
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.21 E-value=1.9 Score=28.12 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
.++.|-...-|.|||++|+.|++|++.
T Consensus 3 ~~~~IP~~~vg~IIGk~G~~Ik~I~~~ 29 (71)
T d1j4wa2 3 FNFIVPTGKTGLIIGKGGETIKSISQQ 29 (71)
T ss_dssp EEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEChHhcceEECCCCcChHHHHhh
Confidence 455666777789999999999887654
No 22
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.73 E-value=1.6 Score=28.59 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
++|.|-...-+.|||++|+.|++|++.-
T Consensus 7 ~ei~V~~~~~~~iIG~~G~~i~~I~~~t 34 (71)
T d1viga_ 7 VEINIDHKFHRHLIGKSGANINRIKDQY 34 (71)
T ss_dssp EEEEECSSHHHHHTCSSCCHHHHHHHHT
T ss_pred EEEEECHHHhcccCCCCCchHHHHHHHh
Confidence 4455555566789999999998876543
No 23
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.70 E-value=2.2 Score=27.81 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
.++.|-...-|.+||++|..|++|++.-
T Consensus 4 ~~i~VP~~~vg~iIGk~G~~I~~I~~~t 31 (70)
T d1wvna1 4 HELTIPNNLIGCIIGRQGANINEIRQMS 31 (70)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEChHhcceeECCCChHHHHHHHHc
Confidence 3455666677889999999998876653
No 24
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=49.67 E-value=1.5 Score=28.01 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=3.3
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
..+.|-..+-+.|||++|+.|++|++.
T Consensus 5 ~~i~Ip~~kig~vIG~GG~~Ik~I~~~ 31 (54)
T d1e3ha4 5 ITVKIPVDKIGEVIGPKRQMINQIQED 31 (54)
T ss_dssp C---------------------CHHHH
T ss_pred EEEEeCHHHeeEEECCccHHHHHHHHH
Confidence 345566778899999999998876553
No 25
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.09 E-value=2.7 Score=28.21 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=22.4
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
.+.+.|-...-+.|||++|+.|++|++.-.
T Consensus 11 ~~~i~Vp~~~~~~iIG~~G~~i~~I~~~t~ 40 (84)
T d2ctla1 11 KLSVTVDPKYHPKIIGRKGAVITQIRLEHD 40 (84)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHHHHT
T ss_pred EEEEEECHHHHhhhcCCCchhHHHHHHHhC
Confidence 345555556777899999999988776654
No 26
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.81 E-value=2.7 Score=29.45 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=22.9
Q ss_pred eEEEEEEecCCceeecCCcchHHHHHHHHH
Q 026835 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 45 ~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
..++.|-...-+.|||++|..|++|++.=.
T Consensus 16 ~~~i~IP~~~vg~vIGk~G~~Ik~I~~~tg 45 (104)
T d1we8a_ 16 FEQLSVPQRSVGRIIGRGGETIRSICKASG 45 (104)
T ss_dssp EEEEEEETTTHHHHHTTTSHHHHHHHHHHC
T ss_pred EEEEEECHHHhcceECCCCcchHHHHHHcC
Confidence 345666667778899999999988776543
No 27
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.51 E-value=3 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=23.0
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHHHHHhC
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~ 78 (232)
.+|.|-...-+.|||++|..|++|++.-.-...
T Consensus 12 ~~i~Ip~~~~~~iIG~~G~~i~~I~~~tg~~I~ 44 (81)
T d2ctea1 12 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQ 44 (81)
T ss_dssp EEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCB
T ss_pred EEEEECHHHHhhccCCCChhHHHHHHHhCCEEE
Confidence 344445556678999999999988776543333
No 28
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.54 E-value=3 Score=27.78 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEecCCceeecCCcchHHHHHHHH
Q 026835 47 EIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 47 ~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
++.|-...-+.|||++|+.|++|++.-
T Consensus 11 ~i~Vp~~~~g~iIGk~G~~Ik~I~~~t 37 (81)
T d1x4ma1 11 EIMIPASKAGLVIGKGGETIKQLQERA 37 (81)
T ss_dssp EEEECHHHHHHHSCSSSSHHHHHHHHH
T ss_pred EEEECHHHcCeeECCCCchHHHHHHHh
Confidence 344444566789999999999887763
No 29
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.05 E-value=5 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEEecCCceeecCCcchHHHHHHH
Q 026835 47 EIIIRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 47 ~I~I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
+|.|-...-|.|||++|..|++|++.
T Consensus 11 ~i~IP~~~~g~iIG~~G~~i~~I~~~ 36 (79)
T d1x4na1 11 EYKVPDGMVGFIIGRGGEQISRIQQE 36 (79)
T ss_dssp EEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEChHhhcceECCCchhHHHHHHH
Confidence 44444556678999999999886654
No 30
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.87 E-value=3.7 Score=27.31 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=16.6
Q ss_pred cCCceeecCCcchHHHHHHHH
Q 026835 53 TRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 53 ~rPg~iIG~~g~~i~~l~~~L 73 (232)
..-+.|||++|+.|++|++.-
T Consensus 19 ~~~~~iIGk~G~~I~~I~~~~ 39 (82)
T d2ctja1 19 KLHNSLIGTKGRLIRSIMEEC 39 (82)
T ss_dssp HHHHHHHCSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCccHHHHHHHc
Confidence 456789999999998887544
No 31
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.44 E-value=3.5 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEEecCCceeecCCcchHHHHHHHH
Q 026835 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 46 i~I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
..|.|-....+.|||++|..|++|++.-
T Consensus 12 ~~i~Vp~~~~~~iIG~~G~~i~~I~~~t 39 (91)
T d2ctka1 12 IEVEVPFDLHRYVIGQKGSGIRKMMDEF 39 (91)
T ss_dssp EEEECCHHHHHHHHCSSSHHHHHHHHHT
T ss_pred EEEEECHHHHhHhcCCCchhHHHHHHHh
Confidence 3444444566789999999998876543
No 32
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.20 E-value=2.4 Score=28.60 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=18.2
Q ss_pred EEEEEecCCceeecCCcchHHHHHH
Q 026835 47 EIIIRATRTQNVLGEKGRRIRELTS 71 (232)
Q Consensus 47 ~I~I~~~rPg~iIG~~g~~i~~l~~ 71 (232)
++.|-...-|.+||++|+.|++|++
T Consensus 11 ~i~Ip~~~ig~vIG~gG~~I~~I~~ 35 (78)
T d2cpqa1 11 EFVVREDLMGLAIGTHGSNIQQARK 35 (78)
T ss_dssp EEECCHHHHHHHHTTTTHHHHHHHT
T ss_pred EEEECHHHHHHHcCCChHHHHHHHH
Confidence 3444455667899999999887654
No 33
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=29.88 E-value=22 Score=21.86 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026835 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (232)
Q Consensus 62 ~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~ 93 (232)
|.+-++.+++.+.+.+|.+...+.|.+.|+..
T Consensus 16 K~~l~~~it~~~~~~~g~~~~~v~V~i~E~~~ 47 (59)
T d1otfa_ 16 KETLIRQVSEAMANSLDAPLERVRVLITEMPK 47 (59)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEEEEECG
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEEeCh
Confidence 45567889999999999988899999988765
No 34
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.44 E-value=6 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=18.8
Q ss_pred EEEEecCCceeecCCcchHHHHHHHH
Q 026835 48 IIIRATRTQNVLGEKGRRIRELTSVV 73 (232)
Q Consensus 48 I~I~~~rPg~iIG~~g~~i~~l~~~L 73 (232)
|.|=....+.|||++|..|++|++.=
T Consensus 14 i~Vp~~~~~~iIG~~G~~i~~I~~~t 39 (81)
T d2ctma1 14 VPLDHRVHARIIGARGKAIRKIMDEF 39 (81)
T ss_dssp EECCTTTHHHHHCSSSCHHHHHHHHH
T ss_pred EEECHHHHhhccCCCCccHHHHHHHh
Confidence 33334456789999999999887553
No 35
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=28.41 E-value=61 Score=21.86 Aligned_cols=60 Identities=12% Similarity=-0.013 Sum_probs=39.5
Q ss_pred EEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEE---EEEecCCCcChHHHHHHHHHHHhCCcc
Q 026835 48 IIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY---AEKVNNRGLCAIAQAESLRYKLLGGLA 114 (232)
Q Consensus 48 I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~---v~ev~~p~~~a~~iA~~Ia~~Lekr~~ 114 (232)
|.|-..+-+.+||++|+.|+.|++. ++. ++.|. .+.|.-++.++...|...-..+.+...
T Consensus 5 i~I~~~ki~~vIG~gG~~ik~i~~~----t~~---~I~I~d~G~V~I~g~~~~~~~~A~~~I~~I~~ea~ 67 (87)
T d2z0sa2 5 VEISPAKVPRVIGRKMSMLKTLEEK----TEC---KIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAY 67 (87)
T ss_dssp EECCGGGSGGGTCGGGHHHHHHHHH----HCC---EEEEETTTEEEEECSCHHHHHHHHHHHHHHHHCSC
T ss_pred EEEChhhcceeECCCCcHHHHHHHH----HCC---EEEECCCcEEEEEeCCHHHHHHHHHHHHHHHHhch
Confidence 4455677889999999888776554 442 23322 234556777777778777777766543
No 36
>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]}
Probab=28.30 E-value=67 Score=22.19 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=37.7
Q ss_pred EEEcCCeEEEEEEec---CCceeecCC--------------cchHHHHHHHHHHHhCCCCCeeEEE--------EEEecC
Q 026835 39 VRVTPVRTEIIIRAT---RTQNVLGEK--------------GRRIRELTSVVQKRFKFPENSVELY--------AEKVNN 93 (232)
Q Consensus 39 I~rt~~~i~I~I~~~---rPg~iIG~~--------------g~~i~~l~~~L~k~~~~~~~~v~I~--------v~ev~~ 93 (232)
|..+.+++.|.|++. +-..+.|.. |+-=+.|.+.|.+.|+++..++.|. +.+|.+
T Consensus 8 i~~~~~gv~i~v~V~P~ak~~~i~~~~~~~l~v~v~app~~GkAN~ali~~Lak~l~v~ks~I~I~~G~tSr~K~i~I~~ 87 (100)
T d1yh5a1 8 VTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIIN 87 (100)
T ss_dssp EEECSSEEEEEEECCBSCSSCCCCCCCSSCEECCBSSCSCTTTHHHHHHHHHHHHHTCCTTTEEEEECCSSSEEEEEEES
T ss_pred eEEcCCeEEEEEEEEeCCcccccccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCCcccEEEEecCCCCceEEEEeC
Confidence 556677777777772 222344432 4444899999999999987666653 455666
Q ss_pred CCc
Q 026835 94 RGL 96 (232)
Q Consensus 94 p~~ 96 (232)
|..
T Consensus 88 ~~~ 90 (100)
T d1yh5a1 88 PQQ 90 (100)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 37
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.37 E-value=5.2 Score=27.24 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=20.2
Q ss_pred EEEEecCCceeecCCcchHHHHHHHHH
Q 026835 48 IIIRATRTQNVLGEKGRRIRELTSVVQ 74 (232)
Q Consensus 48 I~I~~~rPg~iIG~~g~~i~~l~~~L~ 74 (232)
|.|-...-+.|||++|+.|++|++.-.
T Consensus 5 i~Ip~~~ig~IIG~gG~~I~~I~~~tg 31 (84)
T d2ba0a3 5 VAINPARVPRVIGKKGSMIKLLKSELD 31 (84)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred EEEChhhcceeeCCcHHHHHHHHHHHC
Confidence 444556667899999999988776644
No 38
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=26.84 E-value=3.4 Score=27.14 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=16.8
Q ss_pred EEecCCceeecCCcchHHHHHHH
Q 026835 50 IRATRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 50 I~~~rPg~iIG~~g~~i~~l~~~ 72 (232)
|=..+-+.|||++|+.+++|++.
T Consensus 7 Ip~~~ig~iIGkgG~~Ik~i~~~ 29 (69)
T d2je6i3 7 IMPVKVPRVIGKNKSMYETLTSK 29 (69)
T ss_dssp CCGGGHHHHHCGGGHHHHHHHTT
T ss_pred EChhhccceECCchhHHHHHHHH
Confidence 33455678999999988876654
No 39
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.07 E-value=8 Score=26.33 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=20.5
Q ss_pred CeEEEEEEe--cCCceeecCCcchHHHHHHH
Q 026835 44 VRTEIIIRA--TRTQNVLGEKGRRIRELTSV 72 (232)
Q Consensus 44 ~~i~I~I~~--~rPg~iIG~~g~~i~~l~~~ 72 (232)
+.+.+.+.+ ...+.|||++|+.|++|++.
T Consensus 19 ~~~t~~v~VP~~~h~~iIG~~G~~I~~i~~~ 49 (90)
T d2ctfa1 19 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQ 49 (90)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred CcEEEEEEcCHHHHhhcCCCCchhHHHHHHH
Confidence 344445554 34567999999999998775
No 40
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=21.52 E-value=41 Score=23.21 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=33.6
Q ss_pred EcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026835 41 VTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (232)
Q Consensus 41 rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~ 93 (232)
|+...+-|.|.+ .+|.=-..|.+-.+.|.+.|.+.+|.+..++.|.+.++..
T Consensus 55 rs~~~~~I~i~~-~~grs~eqK~~l~~~lt~~l~~~lgi~~~~v~I~i~e~~~ 106 (120)
T d1mwwa_ 55 RSDDYTVIEINL-MAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPA 106 (120)
T ss_dssp SCTTCEEEEEEE-ETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECG
T ss_pred CCCCEEEEEEEE-cCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCH
Confidence 444445454443 2222222234456888899999999988899999988764
No 41
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=21.18 E-value=39 Score=20.84 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=27.0
Q ss_pred CCcchHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026835 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (232)
Q Consensus 61 ~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~ 93 (232)
.|.+-++.+++.+.+.+|.+...+.|.+.|+..
T Consensus 15 qK~~l~~~it~~~~~~~g~~~e~v~V~i~E~~~ 47 (62)
T d1s0ya_ 15 QKRALSAGLLRVISEATGEPRENIFFVIREGSG 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCh
Confidence 345566888999999999988899999988764
No 42
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=20.20 E-value=43 Score=23.77 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=36.0
Q ss_pred EEcCCeEEEEEEecCCceeecCCcchHHHHHHHHHHHhCCCCCeeEEEEEEecCC
Q 026835 40 RVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNR 94 (232)
Q Consensus 40 ~rt~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ev~~p 94 (232)
.|+...+-|.|. .+ |.=...|.+-++.|.+.|.+.+|.++..+.|.+.++..-
T Consensus 60 ~rs~~~v~I~I~-~~-GRs~eqK~~l~~~l~~~l~~~~gi~~e~v~V~i~E~~~~ 112 (129)
T d2aala1 60 GRSSAVVLLTVI-SR-PRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSDA 112 (129)
T ss_dssp CCCTTCEEEEEE-ES-CCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGG
T ss_pred CCCCceEEEEEE-eC-CCCHHHHHHHHHHHHHHHHHHhCcCcCcEEEEEEECCHH
Confidence 344455555552 22 333333455668889999999999889999999988754
No 43
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.11 E-value=64 Score=20.76 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=26.8
Q ss_pred CcChHHHHHHHHHHHhCCccchhhhHHHHHHHHhcCCceeEEEEccc
Q 026835 95 GLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGK 141 (232)
Q Consensus 95 ~~~a~~iA~~Ia~~Lekr~~fRr~~k~~l~~~m~~gakGikI~iSGR 141 (232)
..|-..|..+|...-.-...|+..++.+|++..+. |.-++++|.
T Consensus 21 GsS~~AI~kyI~~~y~~~~~~~~~l~~aLk~~v~~---G~l~q~kg~ 64 (74)
T d1hsta_ 21 GSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAA---GVLKQTKGV 64 (74)
T ss_dssp CEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHT---TSEEEECCS
T ss_pred CcCHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHc---CcEEeeccC
Confidence 44566667777665433345666666666665554 556788763
Done!