RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026835
(232 letters)
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 92
Score = 118 bits (297), Expect = 4e-35
Identities = 70/87 (80%), Positives = 72/87 (82%)
Query: 14 DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73
F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VV
Sbjct: 5 SSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVV 64
Query: 74 QKRFKFPENSVELYAEKVNNRGLCAIA 100
QKRF FPE SVELYAEKV RG +
Sbjct: 65 QKRFGFPEGSVELYAEKVATRGSGPSS 91
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 101
Score = 73.7 bits (181), Expect = 8e-18
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 93 NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKF 152
N L A A+ + ++ AVRRA ++ +MESGAKG +VIVSG++ ++
Sbjct: 2 NPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEW 61
Query: 153 KDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 190
+ + ID GVLG+K I L
Sbjct: 62 AAQGRVPL-HTLRANIDYGFALARTTYGVLGVKAYIFL 98
>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 101
Score = 58.7 bits (142), Expect = 3e-12
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 96 LCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLR-AQRAKSMKFKD 154
L A A+S+ +L + RRA ++ M GAKG +V VSG+L A+ A++ +++
Sbjct: 5 LDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYRE 64
Query: 155 GYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 189
G + + ID GV+G+KV I
Sbjct: 65 GRVPLHTLRAD--IDYNTSEAHTTYGVIGVKVWIF 97
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 37.1 bits (86), Expect = 2e-04
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
L +EL G + V++ + + + V+G G RIR L + K
Sbjct: 42 LEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 95
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 35.2 bits (81), Expect = 0.001
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
LT+ELA+ S + + + I R V+G+KG + +L VV
Sbjct: 42 LTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 28.9 bits (65), Expect = 0.34
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 173
A G E +V L A+ G I S V + A+
Sbjct: 140 ANGTEAVVGAGLITDLAEEAGMT-GIFIYSAATVRQAFSDALD 181
>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 628
Score = 29.5 bits (66), Expect = 0.41
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 14 DGVFFAELNEVLTRELAEDGYSGVEVRVTP 43
G F E+ + + +L Y E R++
Sbjct: 276 QGRFLGEITKQVFSDLEASKYQMAEYRISI 305
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 250
Score = 25.9 bits (56), Expect = 3.8
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRV 41
+ AD V L LA G VE+R
Sbjct: 11 YGADLVRSRGQASFL-PLLAMAGAQRVELRE 40
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding
domain {Influenza A virus [TaxId: 11320]}
Length = 54
Score = 23.3 bits (50), Expect = 7.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 59 LGEKGRRIRELTSVVQKRFKFPENSVE 85
LG+K IR L V+ R K ENS E
Sbjct: 7 LGQKFEEIRWLIEEVRHRLKITENSFE 33
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 25.4 bits (55), Expect = 7.9
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 128 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVK 187
+ G E +R + + D M+ + +N + + + G+ I +
Sbjct: 280 DVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLC 339
Query: 188 IMLEWDQKGKQGPTTPLP----DLVTIHPLKEE 216
+ + + G+ P P+ E+
Sbjct: 340 VNFKNKKTGELLEKGCYPVEEEISEEYEPVYEK 372
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 23.9 bits (52), Expect = 8.9
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 141 KLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 188
++R + ++ F G M+ +G ++ A R LG K
Sbjct: 47 RIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKF 94
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 24.0 bits (52), Expect = 9.0
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 42 TPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPE 81
PV E+ + + V+G+KG IR++ + P
Sbjct: 8 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPA 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.380
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 833,796
Number of extensions: 38204
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 23
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)