BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026836
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2
          Domain
          Length = 83

 Score = 31.6 bits (70), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 70 VCRAFQRGECTRGDG-CKFSH 89
          VCR FQRG C+R D  CKF+H
Sbjct: 11 VCREFQRGTCSRPDTECKFAH 31


>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In
          Muscleblind-Like Protein 2
          Length = 89

 Score = 31.2 bits (69), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 70 VCRAFQRGECTRGD-GCKFSH 89
          VCR FQRG C+R D  CKF+H
Sbjct: 19 VCRQFQRGTCSRSDEECKFAH 39


>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of
          Muscleblind- Like 2, Isoform 1 [homo Sapiens]
          Length = 98

 Score = 30.8 bits (68), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 70 VCRAFQRGECTRGDG-CKFSH 89
          VCR FQRG C RG+  C+F+H
Sbjct: 22 VCREFQRGNCARGETDCRFAH 42


>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
 pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
 pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
 pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
          Length = 70

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 70 VCRAFQRGECTRGDG-CKFSH 89
          VCR +QRG C RG+  C+F+H
Sbjct: 8  VCREYQRGNCNRGENDCRFAH 28


>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
          With F2f3 Fragment Of Human Cellular Factor Cpsf30,
          Northeast Structural Genomics Targets Or8c And Hr6309a
 pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
          With F2f3 Fragment Of Human Cellular Factor Cpsf30,
          Northeast Structural Genomics Targets Or8c And Hr6309a
          Length = 72

 Score = 28.9 bits (63), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 70 VCRAFQRGECTRGDGCKFSH 89
          VC+ + RG C +GD C+F H
Sbjct: 18 VCKHWLRGLCKKGDQCEFLH 37


>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
          Cleavage And Polyadenylation Specificity Factor
          Length = 77

 Score = 27.7 bits (60), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 70 VCRAFQRGECTRGDGCKFSH 89
          VC+ + RG C +GD C+F H
Sbjct: 12 VCKHWLRGLCKKGDQCEFLH 31


>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
          Length = 899

 Score = 27.3 bits (59), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 164 GRRED---KRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSST 219
           G +ED   KR ++  D        R ++YRR ++R    ESESY+     +R  +  ST
Sbjct: 391 GNQEDDIFKRLKQQEDR-------RNENYRRRQQRESNQESESYVDNVVIQRSVETQST 442


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,378,709
Number of Sequences: 62578
Number of extensions: 248243
Number of successful extensions: 385
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 28
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)