BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026836
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 27 FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
+NLNGA +LGRTI+VDH YKK EEEDEETR++ RE RGVCRAFQRGECTRGD CK
Sbjct: 92 LAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCK 151
Query: 87 FSHNEQRAANTGGG-PQDRSSRWGHEK 112
FSH+E+RAANTG G +DRSS+W H+K
Sbjct: 152 FSHDEKRAANTGWGHEEDRSSKWDHDK 178
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 122/228 (53%), Gaps = 33/228 (14%)
Query: 27 FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
+NLNGA++LGR +RVDHV+KYKKKEEEDEE Q+ RE RGVC AFQ+GEC RG C+
Sbjct: 92 LAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCR 151
Query: 87 FSHNEQRAANTGGGPQDRS-SRW----------GHEKFEGFSWGKNDSSSRATGSGRVAL 135
+SH+EQR ANTG G ++ S +RW H+KF S G+ RA +
Sbjct: 152 YSHDEQRNANTGWGSKEESKARWEHDRHHEPPMSHKKFPS-SAGEQRFPDRAKEENKST- 209
Query: 136 EGNPNQSDRRE--EKRSIRHDHREKPREDHGR----REDKRSR--RHSDNNEFEARSRED 187
G QS R E + R R H ++ +DH R R +RSR R +N+ +
Sbjct: 210 -GREGQSSRSEAYKDRDSRLRHSDRGSKDHDRYRHDRSPERSRGDRQRNNDRYAQG---- 264
Query: 188 HYRRDEKRPKRHESESYLREDQDRRGGDKSSTG----RGDSSSHRHRE 231
RDEK + + DQ R D S+G RG+ S R+R+
Sbjct: 265 ---RDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERRGNEDSERYRK 309
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 30 NNLNGAQILGRTIRVDHVAKYKKKEE-EDEETRQRMREERGV 70
+N NG +I GRTIRVDHVA Y+ +E ED + R +E+G
Sbjct: 95 DNFNGIKIKGRTIRVDHVANYRAPQESEDVDDVTRELQEKGC 136
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 30 NNLNGAQILGRTIRVDHVAKY---KKKEEEDEETRQ 62
+N NG +I GRTIRVDHV+ Y K EE D+ TRQ
Sbjct: 95 DNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQ 130
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 27 FLPNNLNGAQILGRTIRVDHVAKYKKKEE-EDEETRQRMREERGV 70
+N NG +I GRTIRVDHV+ Y+ +E ED + R +E+G
Sbjct: 92 LAVDNFNGIKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEKGC 136
>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens
GN=ZC3H15 PE=1 SV=1
Length = 426
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 70 VCRAFQRGECTRGDGCKFSHN 90
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>sp|Q1RMM1|ZC3HF_BOVIN Zinc finger CCCH domain-containing protein 15 OS=Bos taurus
GN=ZC3H15 PE=2 SV=1
Length = 426
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 70 VCRAFQRGECTRGDGCKFSHN 90
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus
GN=Zc3h15 PE=2 SV=1
Length = 426
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 70 VCRAFQRGECTRGDGCKFSHN 90
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus
GN=Zc3h15 PE=1 SV=2
Length = 426
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 70 VCRAFQRGECTRGDGCKFSHN 90
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,501,961
Number of Sequences: 539616
Number of extensions: 4063148
Number of successful extensions: 24727
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 838
Number of HSP's that attempted gapping in prelim test: 16500
Number of HSP's gapped (non-prelim): 5532
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)