Query 026836
Match_columns 232
No_of_seqs 132 out of 177
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 23:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rpp_A Muscleblind-like protei 95.6 0.0035 1.2E-07 47.5 1.4 27 67-93 16-43 (89)
2 3d2n_A Muscleblind-like protei 95.6 0.0036 1.2E-07 46.7 1.2 26 67-92 8-34 (83)
3 3d2q_A Muscleblind-like protei 95.5 0.0047 1.6E-07 44.0 1.5 25 68-92 6-31 (70)
4 2e5s_A Otthump00000018578; ZF- 93.5 0.0099 3.4E-07 45.4 -0.7 27 67-93 19-46 (98)
5 2rhk_C Cleavage and polyadenyl 93.4 0.023 7.9E-07 40.9 1.1 25 68-92 16-40 (72)
6 2d9n_A Cleavage and polyadenyl 92.8 0.042 1.4E-06 39.5 1.8 25 68-92 10-34 (77)
7 2cqe_A KIAA1064 protein; CCCH 88.7 0.13 4.3E-06 39.0 1.0 24 67-90 12-35 (98)
8 1m9o_A Tristetraproline; Cys3H 88.6 0.15 5.1E-06 35.6 1.3 27 68-94 12-39 (77)
9 2wbr_A GW182, gawky, LD47780P; 88.3 0.098 3.3E-06 39.7 0.2 24 24-47 55-78 (89)
10 3d2q_A Muscleblind-like protei 88.2 0.17 5.9E-06 35.8 1.4 25 67-92 41-65 (70)
11 2dnr_A Synaptojanin-1; RRM dom 86.6 0.14 4.8E-06 39.1 0.2 24 23-47 60-83 (91)
12 3d2n_A Muscleblind-like protei 85.4 0.3 1E-05 36.2 1.5 25 67-92 42-66 (83)
13 2dgx_A KIAA0430 protein; RRM d 85.4 0.18 6E-06 35.6 0.2 24 24-47 64-87 (96)
14 3egn_A RNA-binding protein 40; 85.0 0.21 7.3E-06 37.4 0.5 30 24-53 104-133 (143)
15 4fxv_A ELAV-like protein 1; RN 84.5 0.19 6.7E-06 36.2 0.1 24 24-47 73-96 (99)
16 2e5s_A Otthump00000018578; ZF- 84.2 0.36 1.2E-05 36.7 1.4 26 66-92 54-79 (98)
17 3s8s_A Histone-lysine N-methyl 84.0 0.21 7.2E-06 36.9 0.1 25 23-47 59-83 (110)
18 2diu_A KIAA0430 protein; struc 83.0 0.19 6.5E-06 38.8 -0.5 27 21-47 55-81 (96)
19 2hzc_A Splicing factor U2AF 65 82.1 0.47 1.6E-05 32.0 1.2 22 24-46 65-86 (87)
20 2nlw_A Eukaryotic translation 81.8 0.42 1.5E-05 34.2 1.0 27 24-50 73-100 (105)
21 1ufw_A Synaptojanin 2; RNP dom 81.7 0.2 6.8E-06 38.7 -0.9 23 23-46 69-91 (95)
22 2cpi_A CCR4-NOT transcription 81.6 0.34 1.1E-05 35.1 0.4 24 24-47 75-98 (111)
23 2a3j_A U1 small nuclear ribonu 81.3 0.18 6.2E-06 38.7 -1.3 25 23-47 83-107 (127)
24 3p5t_L Cleavage and polyadenyl 81.2 0.21 7.3E-06 34.7 -0.8 25 24-48 57-81 (90)
25 2e44_A Insulin-like growth fac 80.9 0.25 8.7E-06 34.2 -0.5 24 24-47 66-89 (96)
26 1wg1_A KIAA1579 protein, homol 80.7 0.35 1.2E-05 33.4 0.2 24 24-47 52-75 (88)
27 2d9m_A Zinc finger CCCH-type d 80.5 0.62 2.1E-05 34.4 1.4 24 69-92 21-44 (69)
28 1x5p_A Negative elongation fac 80.0 0.5 1.7E-05 33.1 0.8 25 24-48 61-85 (97)
29 2rpp_A Muscleblind-like protei 79.7 0.66 2.3E-05 35.0 1.4 25 67-92 50-74 (89)
30 1jmt_A Splicing factor U2AF 35 79.6 0.33 1.1E-05 35.7 -0.3 24 24-47 80-103 (104)
31 4a8x_A RNA-binding protein wit 78.9 0.49 1.7E-05 31.9 0.4 24 24-47 59-82 (88)
32 2dit_A HIV TAT specific factor 78.8 0.51 1.7E-05 34.3 0.5 24 24-47 76-99 (112)
33 2krb_A Eukaryotic translation 78.8 0.32 1.1E-05 33.0 -0.5 22 24-45 59-81 (81)
34 1fjc_A Nucleolin RBD2, protein 78.6 0.58 2E-05 32.3 0.8 25 24-48 65-89 (96)
35 2cqe_A KIAA1064 protein; CCCH 78.0 0.81 2.8E-05 34.5 1.5 25 68-92 36-61 (98)
36 3mdf_A Peptidyl-prolyl CIS-tra 77.7 0.47 1.6E-05 31.9 0.1 24 24-47 61-84 (85)
37 2dng_A Eukaryotic translation 77.6 0.96 3.3E-05 31.8 1.7 24 24-48 68-91 (103)
38 2la4_A Nuclear and cytoplasmic 77.5 0.4 1.4E-05 33.6 -0.3 24 24-47 75-98 (101)
39 2d9n_A Cleavage and polyadenyl 77.5 1 3.4E-05 32.3 1.8 24 68-92 38-62 (77)
40 2jvr_A Nucleolar protein 3; RN 77.4 0.61 2.1E-05 35.0 0.6 24 24-47 79-102 (111)
41 3v4m_A Splicing factor U2AF 65 77.1 0.46 1.6E-05 35.0 -0.1 24 24-47 71-94 (105)
42 2cpd_A Apobec-1 stimulating pr 77.1 0.56 1.9E-05 32.8 0.3 24 24-47 63-86 (99)
43 1x5t_A Splicing factor 3B subu 77.0 0.67 2.3E-05 31.9 0.7 24 24-47 60-83 (96)
44 3md1_A Nuclear and cytoplasmic 76.9 0.51 1.7E-05 31.6 0.1 24 24-47 55-78 (83)
45 2cqi_A Nucleolysin TIAR; RNA r 76.8 0.72 2.5E-05 32.4 0.8 26 24-49 67-92 (103)
46 2cpz_A CUG triplet repeat RNA- 76.8 0.55 1.9E-05 33.7 0.2 24 24-47 79-102 (115)
47 2e5h_A Zinc finger CCHC-type a 76.7 0.67 2.3E-05 31.8 0.6 24 24-47 70-93 (94)
48 2ywk_A Putative RNA-binding pr 76.6 0.61 2.1E-05 32.1 0.4 24 24-47 69-92 (95)
49 2cqp_A RNA-binding protein 12; 76.6 0.64 2.2E-05 32.2 0.5 24 24-47 69-92 (98)
50 4f25_A Polyadenylate-binding p 76.6 0.53 1.8E-05 34.4 0.1 24 24-47 57-80 (115)
51 2cq0_A Eukaryotic translation 76.1 0.67 2.3E-05 32.5 0.5 24 24-47 69-92 (103)
52 2e5j_A Methenyltetrahydrofolat 75.9 0.5 1.7E-05 33.1 -0.2 24 24-47 68-91 (97)
53 2x1f_A MRNA 3'-END-processing 75.9 0.56 1.9E-05 32.6 0.1 24 24-47 56-79 (96)
54 2fc9_A NCL protein; structure 75.7 0.72 2.5E-05 32.2 0.6 24 24-47 65-88 (101)
55 3ulh_A THO complex subunit 4; 75.5 0.54 1.8E-05 33.1 -0.1 23 25-47 83-105 (107)
56 2pe8_A Splicing factor 45; RRM 75.4 0.59 2E-05 34.5 0.1 24 24-47 68-91 (105)
57 2lcw_A RNA-binding protein FUS 77.0 0.6 2E-05 33.7 0.0 25 23-47 68-92 (116)
58 2fc8_A NCL protein; structure 75.0 0.61 2.1E-05 32.6 0.1 24 24-47 66-89 (102)
59 2ek1_A RNA-binding protein 12; 74.9 0.67 2.3E-05 31.9 0.2 24 24-47 69-92 (95)
60 2cqc_A Arginine/serine-rich sp 74.8 0.71 2.4E-05 31.6 0.4 24 24-47 69-92 (95)
61 3bs9_A Nucleolysin TIA-1 isofo 74.6 0.58 2E-05 31.5 -0.1 24 24-47 60-83 (87)
62 2cpf_A RNA binding motif prote 74.6 1.1 3.8E-05 31.0 1.3 25 24-48 62-86 (98)
63 2dgo_A Cytotoxic granule-assoc 74.6 0.98 3.4E-05 32.3 1.1 26 24-49 69-94 (115)
64 1x4a_A Splicing factor, argini 74.5 0.88 3E-05 32.3 0.8 25 24-48 73-97 (109)
65 2cqb_A Peptidyl-prolyl CIS-tra 74.3 0.91 3.1E-05 31.7 0.8 25 24-48 66-90 (102)
66 1oo0_B CG8781-PA, drosophila Y 74.1 0.73 2.5E-05 32.7 0.3 24 24-47 80-103 (110)
67 2cpe_A RNA-binding protein EWS 73.9 0.93 3.2E-05 32.3 0.8 26 24-49 77-102 (113)
68 1wf1_A RNA-binding protein RAL 73.8 0.74 2.5E-05 32.9 0.3 27 24-50 74-100 (110)
69 2dnp_A RNA-binding protein 14; 73.7 0.88 3E-05 31.3 0.6 25 24-48 55-79 (90)
70 2dnz_A Probable RNA-binding pr 73.7 0.49 1.7E-05 32.6 -0.7 24 24-47 59-82 (95)
71 2dgt_A RNA-binding protein 30; 73.5 0.75 2.5E-05 31.7 0.2 24 24-47 56-79 (92)
72 2xnq_A Nuclear polyadenylated 73.4 0.71 2.4E-05 32.8 0.1 24 24-47 69-92 (97)
73 2cqh_A IGF-II mRNA-binding pro 73.2 0.72 2.5E-05 31.8 0.1 24 24-47 56-80 (93)
74 3lqv_A PRE-mRNA branch site pr 73.0 0.87 3E-05 32.5 0.5 25 24-48 59-83 (115)
75 1whw_A Hypothetical protein ri 72.9 1 3.5E-05 31.2 0.8 25 24-48 62-86 (99)
76 2dnq_A RNA-binding protein 4B; 72.9 0.8 2.7E-05 31.5 0.2 25 24-48 54-78 (90)
77 1whx_A Hypothetical protein ri 72.9 0.53 1.8E-05 34.4 -0.8 25 24-48 58-82 (111)
78 1nu4_A U1A RNA binding domain; 72.9 0.74 2.5E-05 31.7 0.1 24 24-47 63-86 (97)
79 2cpx_A Hypothetical protein FL 72.6 0.93 3.2E-05 32.3 0.5 25 24-48 79-103 (115)
80 2dnm_A SRP46 splicing factor; 72.5 0.76 2.6E-05 32.2 0.0 26 24-49 67-92 (103)
81 2khc_A Testis-specific RNP-typ 72.5 0.82 2.8E-05 32.8 0.2 23 25-47 95-117 (118)
82 1p27_B RNA-binding protein 8A; 72.4 0.65 2.2E-05 32.7 -0.3 24 24-47 77-100 (106)
83 1x4c_A Splicing factor, argini 72.2 0.99 3.4E-05 32.3 0.6 25 24-48 62-91 (108)
84 2la6_A RNA-binding protein FUS 71.6 0.63 2.1E-05 32.6 -0.6 24 24-47 75-98 (99)
85 1h2v_Z 20 kDa nuclear CAP bind 71.5 1.2 3.9E-05 33.8 0.8 29 24-52 93-121 (156)
86 1x4g_A Nucleolysin TIAR; struc 71.3 0.92 3.1E-05 32.3 0.2 24 24-47 73-96 (109)
87 2cq3_A RNA-binding protein 9; 71.1 0.86 2.9E-05 32.0 0.1 24 24-47 67-90 (103)
88 2ki2_A SS-DNA binding protein 71.0 0.66 2.3E-05 31.7 -0.6 24 25-48 55-78 (90)
89 1u6f_A Tcubp1, RNA-binding pro 70.9 1 3.4E-05 33.3 0.4 25 24-48 96-120 (139)
90 1x5u_A Splicing factor 3B subu 70.9 0.83 2.8E-05 32.0 -0.1 24 24-47 69-92 (105)
91 3ns6_A Eukaryotic translation 70.4 0.7 2.4E-05 32.9 -0.6 24 24-47 66-90 (100)
92 2do4_A Squamous cell carcinoma 70.3 0.84 2.9E-05 31.8 -0.1 24 24-47 70-93 (100)
93 1p1t_A Cleavage stimulation fa 70.3 0.81 2.8E-05 31.9 -0.2 24 24-47 62-85 (104)
94 1m9o_A Tristetraproline; Cys3H 70.2 0.9 3.1E-05 31.6 0.0 25 68-92 50-75 (77)
95 1wel_A RNA-binding protein 12; 70.2 1.6 5.6E-05 31.9 1.4 23 24-47 79-101 (124)
96 2jwn_A Embryonic polyadenylate 70.2 1.7 5.8E-05 31.4 1.5 26 24-50 90-115 (124)
97 3beg_B Splicing factor, argini 70.0 0.56 1.9E-05 34.3 -1.2 24 24-47 63-86 (115)
98 3ucg_A Polyadenylate-binding p 69.8 1.9 6.4E-05 29.1 1.5 23 24-47 60-82 (89)
99 2do0_A HnRNP M, heterogeneous 69.6 1.3 4.4E-05 31.5 0.7 25 24-48 68-92 (114)
100 2jrs_A RNA-binding protein 39; 69.3 0.77 2.6E-05 33.3 -0.6 24 24-47 80-103 (108)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 69.3 1.1 3.7E-05 32.7 0.3 23 24-46 117-139 (140)
102 2kxn_B Transformer-2 protein h 69.3 0.97 3.3E-05 34.0 -0.0 25 24-48 100-124 (129)
103 2err_A Ataxin-2-binding protei 69.3 1 3.4E-05 32.6 0.1 24 24-47 81-104 (109)
104 2kn4_A Immunoglobulin G-bindin 69.1 1.4 4.8E-05 33.1 0.8 28 24-51 124-151 (158)
105 2dgv_A HnRNP M, heterogeneous 69.0 0.8 2.7E-05 31.3 -0.5 25 24-48 60-84 (92)
106 3n9u_C Cleavage and polyadenyl 69.0 1.2 4.2E-05 34.8 0.5 24 24-47 111-134 (156)
107 2jvo_A Nucleolar protein 3; nu 68.9 1.1 3.8E-05 32.5 0.2 24 24-47 77-100 (108)
108 1fj7_A Nucleolin RBD1, protein 68.8 0.84 2.9E-05 31.9 -0.4 24 24-48 70-93 (101)
109 3s6e_A RNA-binding protein 39; 68.8 0.96 3.3E-05 34.3 -0.1 24 24-47 67-90 (114)
110 2div_A TRNA selenocysteine ass 68.6 1.3 4.6E-05 30.6 0.6 25 24-48 64-92 (99)
111 1wi8_A EIF-4B, eukaryotic tran 68.6 1.4 4.7E-05 31.1 0.7 23 24-47 69-91 (104)
112 1rk8_A CG8781-PA, CG8781-PA pr 68.4 1.1 3.7E-05 34.6 0.1 24 24-47 126-149 (165)
113 3tyt_A Heterogeneous nuclear r 68.1 1.1 3.7E-05 36.2 0.1 25 23-47 53-77 (205)
114 1x5s_A Cold-inducible RNA-bind 67.8 0.69 2.3E-05 32.3 -1.0 24 24-47 66-89 (102)
115 2yh0_A Splicing factor U2AF 65 67.8 1.5 5.3E-05 33.1 0.9 29 24-53 63-91 (198)
116 2cq4_A RNA binding motif prote 67.8 1.2 4E-05 31.9 0.2 23 24-47 79-101 (114)
117 2dgw_A Probable RNA-binding pr 67.7 1.4 5E-05 30.1 0.6 23 24-47 62-84 (91)
118 2d9p_A Polyadenylate-binding p 67.7 1.1 3.7E-05 31.4 -0.0 26 24-49 67-92 (103)
119 2dgu_A Heterogeneous nuclear r 67.6 1.2 4.1E-05 31.4 0.2 24 24-47 57-80 (103)
120 2lxi_A RNA-binding protein 10; 67.6 1.8 6.2E-05 30.4 1.1 23 25-47 57-80 (91)
121 2fy1_A RNA-binding motif prote 67.5 1.1 3.6E-05 32.9 -0.1 24 24-47 60-83 (116)
122 3ex7_B RNA-binding protein 8A; 67.3 0.89 3E-05 33.0 -0.6 24 24-47 76-99 (126)
123 2kvi_A Nuclear polyadenylated 67.0 0.66 2.3E-05 32.5 -1.3 24 24-47 57-80 (96)
124 2e5i_A Heterogeneous nuclear r 66.9 1.2 4.1E-05 34.4 0.1 24 24-47 74-99 (124)
125 2e5g_A U6 snRNA-specific termi 66.9 1.8 6.1E-05 30.0 1.0 23 24-47 57-79 (94)
126 2ytc_A PRE-mRNA-splicing facto 66.7 1.4 4.7E-05 29.6 0.4 23 25-47 61-84 (85)
127 3zzy_A Polypyrimidine tract-bi 65.8 1.4 4.8E-05 34.7 0.3 24 24-47 78-103 (130)
128 4f02_A Polyadenylate-binding p 65.6 1.3 4.5E-05 35.1 0.1 25 23-47 154-178 (213)
129 2j76_E EIF-4B, EIF4B, eukaryot 65.5 1.1 3.9E-05 31.5 -0.3 23 24-47 73-95 (100)
130 2kt5_A RNA and export factor-b 65.5 1.4 4.8E-05 32.1 0.2 26 24-49 88-113 (124)
131 3ue2_A Poly(U)-binding-splicin 65.2 1.2 4.3E-05 33.7 -0.1 24 24-47 83-106 (118)
132 2lea_A Serine/arginine-rich sp 65.2 1.7 5.8E-05 32.9 0.6 26 24-49 101-126 (135)
133 2rhk_C Cleavage and polyadenyl 65.2 2.6 8.8E-05 30.1 1.6 24 68-92 44-68 (72)
134 2i2y_A Fusion protein consists 65.0 0.96 3.3E-05 34.0 -0.8 24 24-47 122-145 (150)
135 2bz2_A Negative elongation fac 64.7 1.1 3.8E-05 33.5 -0.5 24 24-47 85-108 (121)
136 1why_A Hypothetical protein ri 64.4 1.1 3.8E-05 31.1 -0.5 24 24-47 65-90 (97)
137 3pgw_S U1-70K; protein-RNA com 64.1 1.3 4.3E-05 40.5 -0.4 25 24-48 156-180 (437)
138 2cpj_A Non-POU domain-containi 64.1 1.2 4E-05 31.1 -0.4 24 24-47 63-86 (99)
139 2dis_A Unnamed protein product 61.8 2.6 8.8E-05 29.7 1.0 25 24-48 64-90 (109)
140 2g4b_A Splicing factor U2AF 65 60.3 4.2 0.00014 29.9 2.0 28 24-52 63-90 (172)
141 2cph_A RNA binding motif prote 59.4 1.5 5.2E-05 30.7 -0.5 24 24-47 70-94 (107)
142 2mss_A Protein (musashi1); RNA 58.7 2.3 7.9E-05 27.9 0.3 19 27-46 56-74 (75)
143 1x4h_A RNA-binding protein 28; 58.5 2.1 7.3E-05 30.1 0.1 24 24-47 69-98 (111)
144 3q2s_C Cleavage and polyadenyl 58.0 2.4 8.1E-05 35.1 0.3 25 24-48 124-148 (229)
145 1x4d_A Matrin 3; structural ge 57.6 1.2 4.1E-05 33.1 -1.4 29 24-52 64-94 (102)
146 2qfj_A FBP-interacting repress 57.1 1.2 3.9E-05 34.3 -1.6 24 24-47 179-202 (216)
147 2dhg_A TRNA selenocysteine ass 57.0 1.7 5.7E-05 30.4 -0.7 24 24-47 63-87 (104)
148 2lkz_A RNA-binding protein 5; 56.9 2 6.9E-05 31.1 -0.3 24 24-47 65-92 (95)
149 2dgs_A DAZ-associated protein 55.9 2 7E-05 29.8 -0.4 24 24-48 64-87 (99)
150 2dnh_A Bruno-like 5, RNA bindi 54.9 1.9 6.5E-05 30.2 -0.7 24 24-47 68-94 (105)
151 3u1l_A PRE-mRNA-splicing facto 54.6 3.7 0.00013 35.2 1.0 25 68-92 70-94 (240)
152 2hvz_A Splicing factor, argini 53.6 1.1 3.7E-05 31.3 -2.1 24 24-47 49-72 (101)
153 1sjr_A Polypyrimidine tract-bi 53.4 2.8 9.6E-05 34.3 0.0 25 23-47 95-121 (164)
154 2f3j_A RNA and export factor b 53.3 2.6 8.9E-05 33.5 -0.2 25 24-48 141-165 (177)
155 2cqd_A RNA-binding region cont 50.8 4.5 0.00015 28.9 0.8 23 24-47 71-93 (116)
156 3pgw_A U1-A; protein-RNA compl 49.5 4.1 0.00014 33.0 0.4 26 24-49 64-89 (282)
157 2dgp_A Bruno-like 4, RNA bindi 49.3 2.6 9.1E-05 29.4 -0.7 25 24-48 67-94 (106)
158 2cq2_A Hypothetical protein LO 47.6 4 0.00014 31.3 0.1 26 24-49 75-105 (114)
159 2m2b_A RNA-binding protein 10; 47.2 2.1 7.1E-05 31.7 -1.6 24 24-47 78-105 (131)
160 2db1_A Heterogeneous nuclear r 46.7 5.9 0.0002 29.0 0.8 22 25-47 74-95 (118)
161 2j8a_A Histone-lysine N-methyl 45.9 6 0.0002 32.3 0.8 23 25-47 69-93 (136)
162 2cq1_A PTB-like protein L; RRM 45.5 5.6 0.00019 29.0 0.6 23 25-47 64-88 (101)
163 1fje_B Nucleolin RBD12, protei 44.4 5.6 0.00019 29.5 0.4 24 24-48 66-89 (175)
164 1sjq_A Polypyrimidine tract-bi 41.6 5 0.00017 30.3 -0.2 24 24-47 64-89 (105)
165 3r27_A HnRNP L, heterogeneous 40.5 3.3 0.00011 31.1 -1.4 24 24-47 69-94 (100)
166 1b7f_A Protein (SXL-lethal pro 40.5 6 0.00021 28.9 0.1 25 24-48 57-81 (168)
167 2adc_A Polypyrimidine tract-bi 39.9 3.4 0.00012 33.0 -1.4 25 24-48 84-108 (229)
168 1x4f_A Matrin 3; structural ge 39.9 5.2 0.00018 30.4 -0.4 29 24-52 74-104 (112)
169 1x5o_A RNA binding motif, sing 39.4 4.4 0.00015 28.7 -0.8 24 24-47 78-109 (114)
170 1x4e_A RNA binding motif, sing 39.3 1.1 3.8E-05 30.2 -3.8 24 24-47 59-82 (85)
171 3md3_A Nuclear and cytoplasmic 39.0 6.5 0.00022 28.4 0.1 25 24-48 53-77 (166)
172 2dh8_A DAZ-associated protein 38.8 7.2 0.00025 27.2 0.2 23 24-47 70-92 (105)
173 1fxl_A Paraneoplastic encephal 38.1 6.9 0.00024 28.3 0.1 26 23-48 55-80 (167)
174 2dnn_A RNA-binding protein 12; 37.2 11 0.00036 27.9 0.9 22 25-47 69-90 (109)
175 3smz_A Protein raver-1, ribonu 37.0 7.3 0.00025 31.5 0.1 24 24-47 238-261 (284)
176 1s79_A Lupus LA protein; RRM, 36.4 4.7 0.00016 29.2 -1.1 27 24-51 64-90 (103)
177 2cpy_A RNA-binding protein 12; 36.0 11 0.00039 27.0 0.9 22 25-47 70-91 (114)
178 1x4b_A Heterogeneous nuclear r 36.0 12 0.0004 26.7 1.0 22 25-47 82-103 (116)
179 1qm9_A Polypyrimidine tract-bi 35.3 6.1 0.00021 30.2 -0.7 24 24-47 53-76 (198)
180 2hgl_A HNRPF protein, heteroge 35.1 8.2 0.00028 29.8 0.1 22 25-47 101-122 (136)
181 2lmi_A GRSF-1, G-rich sequence 34.1 6.5 0.00022 28.0 -0.6 23 24-47 67-89 (107)
182 2ad9_A Polypyrimidine tract-bi 32.5 5.9 0.0002 30.4 -1.1 24 24-47 79-104 (119)
183 1wez_A HnRNP H', FTP-3, hetero 30.2 12 0.0004 26.8 0.2 22 25-47 68-89 (102)
184 3u9g_A Zinc finger CCCH-type a 30.0 13 0.00046 32.6 0.6 28 69-96 90-121 (229)
185 3s7r_A Heterogeneous nuclear r 28.8 18 0.00063 24.1 1.0 20 26-46 67-86 (87)
186 2qfj_A FBP-interacting repress 28.2 11 0.00038 28.7 -0.2 28 24-51 82-109 (216)
187 3sde_A Paraspeckle component 1 27.7 13 0.00044 30.3 0.1 23 25-47 71-93 (261)
188 1wex_A Hypothetical protein (r 27.7 5.3 0.00018 29.3 -2.1 25 24-48 63-89 (104)
189 1uaw_A Mouse-musashi-1; RNP-ty 26.1 13 0.00045 24.1 -0.1 23 24-47 54-76 (77)
190 3smz_A Protein raver-1, ribonu 25.7 15 0.00051 29.7 0.1 25 24-48 149-173 (284)
191 2co3_A SAFA pilus subunit; adh 24.6 48 0.0016 27.3 2.9 41 5-47 5-45 (137)
192 2ghp_A U4/U6 snRNA-associated 23.6 17 0.00059 29.5 0.1 24 24-47 171-194 (292)
193 4f02_A Polyadenylate-binding p 22.6 12 0.00041 29.5 -1.1 25 24-48 69-93 (213)
194 3u9g_A Zinc finger CCCH-type a 22.5 32 0.0011 30.2 1.5 24 68-92 175-198 (229)
195 2hgn_A Heterogeneous nuclear r 22.2 16 0.00054 28.3 -0.4 22 25-47 99-120 (139)
196 2fc6_A Nuclear, target of EGR1 21.9 30 0.001 24.2 1.0 30 67-96 19-49 (50)
No 1
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.63 E-value=0.0035 Score=47.50 Aligned_cols=27 Identities=52% Similarity=1.084 Sum_probs=23.9
Q ss_pred hhhhhHhhhcCCCCCCC-CCcccccccc
Q 026836 67 ERGVCRAFQRGECTRGD-GCKFSHNEQR 93 (232)
Q Consensus 67 ~~~v~~alq~~~C~~~~-~ck~sh~~q~ 93 (232)
.-.||+.||+|.|.+++ .|+|+|+...
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 35699999999999998 9999998765
No 2
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.56 E-value=0.0036 Score=46.69 Aligned_cols=26 Identities=54% Similarity=1.114 Sum_probs=23.3
Q ss_pred hhhhhHhhhcCCCCCCC-CCccccccc
Q 026836 67 ERGVCRAFQRGECTRGD-GCKFSHNEQ 92 (232)
Q Consensus 67 ~~~v~~alq~~~C~~~~-~ck~sh~~q 92 (232)
.-.||+.|++|.|.+++ .|+|+|+..
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 45799999999999996 999999975
No 3
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.46 E-value=0.0047 Score=43.97 Aligned_cols=25 Identities=48% Similarity=1.216 Sum_probs=22.4
Q ss_pred hhhhHhhhcCCCCCCCC-Cccccccc
Q 026836 68 RGVCRAFQRGECTRGDG-CKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq~~~C~~~~~-ck~sh~~q 92 (232)
..||+.|++|.|.+|++ |+|+|+..
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 46999999999999995 99999864
No 4
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.54 E-value=0.0099 Score=45.38 Aligned_cols=27 Identities=48% Similarity=1.159 Sum_probs=23.5
Q ss_pred hhhhhHhhhcCCCCCCC-CCcccccccc
Q 026836 67 ERGVCRAFQRGECTRGD-GCKFSHNEQR 93 (232)
Q Consensus 67 ~~~v~~alq~~~C~~~~-~ck~sh~~q~ 93 (232)
...||+.|++|.|.+|+ .|+|+|+...
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 34699999999999999 6999999754
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.38 E-value=0.023 Score=40.92 Aligned_cols=25 Identities=40% Similarity=0.947 Sum_probs=22.6
Q ss_pred hhhhHhhhcCCCCCCCCCccccccc
Q 026836 68 RGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
..||+-|++|.|..|+.|+|+|+..
T Consensus 16 ~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 16 TVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred CeeCHHHhcCCCCCCCCCCCccccc
Confidence 4589999999999999999999854
No 6
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.83 E-value=0.042 Score=39.55 Aligned_cols=25 Identities=40% Similarity=0.947 Sum_probs=22.8
Q ss_pred hhhhHhhhcCCCCCCCCCccccccc
Q 026836 68 RGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
..||+-|++|.|..|+.|+|+|+..
T Consensus 10 ~~~C~~fl~G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 10 TVVCKHWLRGLCKKGDQCEFLHEYD 34 (77)
T ss_dssp TSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred ceeCHhHccCcCCCCCCCCCccccc
Confidence 4689999999999999999999875
No 7
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=88.74 E-value=0.13 Score=39.01 Aligned_cols=24 Identities=29% Similarity=0.915 Sum_probs=21.4
Q ss_pred hhhhhHhhhcCCCCCCCCCccccc
Q 026836 67 ERGVCRAFQRGECTRGDGCKFSHN 90 (232)
Q Consensus 67 ~~~v~~alq~~~C~~~~~ck~sh~ 90 (232)
...||+.|+.|.|..|+.|+|+|+
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCccCcccccCcCCCCCCCCCCCC
Confidence 345899999999999999999998
No 8
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=88.65 E-value=0.15 Score=35.63 Aligned_cols=27 Identities=30% Similarity=0.831 Sum_probs=22.6
Q ss_pred hhhhHhhh-cCCCCCCCCCccccccccc
Q 026836 68 RGVCRAFQ-RGECTRGDGCKFSHNEQRA 94 (232)
Q Consensus 68 ~~v~~alq-~~~C~~~~~ck~sh~~q~~ 94 (232)
..+|+.|+ .|.|..|+.|+|+|+....
T Consensus 12 t~~C~~f~~~G~C~~G~~C~f~H~~~e~ 39 (77)
T 1m9o_A 12 TELCRTYSESGRCRYGAKCQFAHGLGEL 39 (77)
T ss_dssp SCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred chhCHHhhhCCCcCCCCCccCCCCChhh
Confidence 45898885 8899999999999997543
No 9
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=88.28 E-value=0.098 Score=39.68 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+.-||..|||.+|.||+|+|+-.
T Consensus 55 eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 55 EANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp HHHHHHHHHTTEEETTEEEEEECC
T ss_pred HHHHHHHHhcCCEECCcEEEEEEC
Confidence 566799999999999999999877
No 10
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=88.23 E-value=0.17 Score=35.80 Aligned_cols=25 Identities=32% Similarity=0.797 Sum_probs=22.3
Q ss_pred hhhhhHhhhcCCCCCCCCCccccccc
Q 026836 67 ERGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 67 ~~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
.-.||.-|+.|.|+++ .|+|.|+.+
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred cceeccccCcCCCCCC-CcCeeCCHH
Confidence 4679999999999999 999999754
No 11
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.62 E-value=0.14 Score=39.13 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.2
Q ss_pred eeeeeeeecCCCceecCceeEeccc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
-|+..|+. |||++|.||+|+|...
T Consensus 60 ~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 60 SSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp HHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred HHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 34555665 9999999999999754
No 12
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=85.42 E-value=0.3 Score=36.24 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=22.5
Q ss_pred hhhhhHhhhcCCCCCCCCCccccccc
Q 026836 67 ERGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 67 ~~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
.-.||.-|+.|.|.++ .|+|+|+-+
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred ceeehhHhhhccccCC-CcceeCChH
Confidence 5689999999999999 999999854
No 13
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.38 E-value=0.18 Score=35.59 Aligned_cols=24 Identities=21% Similarity=0.015 Sum_probs=21.3
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 64 ~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 64 DAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEEC
T ss_pred HHHHHHHHhCCCEECCeEEEEEEc
Confidence 456788999999999999999987
No 14
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=85.02 E-value=0.21 Score=37.36 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=23.4
Q ss_pred eeeeeeecCCCceecCceeEeccccccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKYKKK 53 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Yk~~ 53 (232)
++..||..|||..|.|++|+|.+...-+++
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 455688899999999999999988443433
No 15
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=84.47 E-value=0.19 Score=36.20 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.2
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 73 ~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 73 DAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999875
No 16
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.23 E-value=0.36 Score=36.71 Aligned_cols=26 Identities=31% Similarity=0.751 Sum_probs=23.0
Q ss_pred HhhhhhHhhhcCCCCCCCCCccccccc
Q 026836 66 EERGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 66 e~~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
+.-.||.-|+.|.|+++ .|+|.|+.+
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CccccchhhccCCCCCC-CcCccCChH
Confidence 45679999999999999 999999864
No 17
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=84.01 E-value=0.21 Score=36.89 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.7
Q ss_pred eeeeeeeecCCCceecCceeEeccc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
-++..||.+|||..|.|++|+|++.
T Consensus 59 ~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 59 RGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3456689999999999999999987
No 18
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.01 E-value=0.19 Score=38.78 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=23.7
Q ss_pred cceeeeeeeecCCCceecCceeEeccc
Q 026836 21 KAIFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 21 ~~~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+-++..|+.+|||..|.||+|+|++.
T Consensus 55 ~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 55 NQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp SHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CHHHHHHHHHHhcCCccCCceEEEEec
Confidence 445666899999999999999999998
No 19
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=82.08 E-value=0.47 Score=32.01 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=19.0
Q ss_pred eeeeeeecCCCceecCceeEecc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDH 46 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDH 46 (232)
++..|+ .|||..|.|++|+|.+
T Consensus 65 ~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 65 ETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHHHHG-GGTTCEETTEECEEEC
T ss_pred HHHHHH-hcCCCEECCeEEEEeC
Confidence 455788 9999999999999975
No 20
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=81.85 E-value=0.42 Score=34.22 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=22.7
Q ss_pred eeeeeeecCCCceecCc-eeEecccccc
Q 026836 24 FSRFLPNNLNGAQILGR-TIRVDHVAKY 50 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR-~irVDHv~~Y 50 (232)
++..||..|||..|.|+ +|+|.....+
T Consensus 73 ~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 73 HAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 45678899999999999 9999887544
No 21
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.73 E-value=0.2 Score=38.70 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.1
Q ss_pred eeeeeeeecCCCceecCceeEecc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDH 46 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDH 46 (232)
-|+..|+. |||.+|.||+|+|..
T Consensus 69 ~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 69 HSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHH-GGGSEETTEEEEEEC
T ss_pred HHHHHHHh-cCCeeeCCeEEEEec
Confidence 35566786 999999999999965
No 22
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.63 E-value=0.34 Score=35.10 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=21.4
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 75 ~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 75 DALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp HHHHHHHHHTTEEETTEEEEEESC
T ss_pred HHHHHHHHhCCCEECCEEEEEEec
Confidence 456788899999999999999987
No 23
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=81.26 E-value=0.18 Score=38.72 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=22.2
Q ss_pred eeeeeeeecCCCceecCceeEeccc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
-++..||.+|||..|.|++|+|...
T Consensus 83 ~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 83 ESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp HHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred HHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 3567789999999999999999987
No 24
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=81.19 E-value=0.21 Score=34.66 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=21.3
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|+.|+|.+..
T Consensus 57 ~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 57 SSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp HHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred HHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4456889999999999999999884
No 25
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.86 E-value=0.25 Score=34.20 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.8
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 66 ~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 66 QARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp HHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEc
Confidence 355688899999999999999977
No 26
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=80.66 E-value=0.35 Score=33.39 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 52 ~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 52 QAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEEC
T ss_pred HHHHHHHHhCCCeECCcEEEEEEc
Confidence 455788899999999999999876
No 27
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.47 E-value=0.62 Score=34.35 Aligned_cols=24 Identities=33% Similarity=1.056 Sum_probs=22.3
Q ss_pred hhhHhhhcCCCCCCCCCccccccc
Q 026836 69 GVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 69 ~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
.+|..|+.|.|.-|+-|.|.|.+.
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred ccCcccCcCCCCCCCccCCcCCHH
Confidence 789999999999999999999864
No 28
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.04 E-value=0.5 Score=33.06 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.7
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|.+..
T Consensus 61 ~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 61 SADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp HHHHHHHHTTTEEETTEEEEEECCS
T ss_pred HHHHHHHHhCCCeECCeEEEEEECC
Confidence 4567888999999999999999873
No 29
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=79.68 E-value=0.66 Score=34.97 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=22.5
Q ss_pred hhhhhHhhhcCCCCCCCCCccccccc
Q 026836 67 ERGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 67 ~~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
.-.||.-|+.|.|++. .|+|.|+-+
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred ceeeehhhhhCcCCCC-CcceecCHH
Confidence 5689999999999998 899999854
No 30
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=79.64 E-value=0.33 Score=35.70 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..+.||+|+|+++
T Consensus 80 ~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 80 DAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHHCCCEECCEEEEEEEc
Confidence 456789999999999999999875
No 31
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=78.87 E-value=0.49 Score=31.89 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+..|||..|.|++|+|.++
T Consensus 59 ~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 59 EAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHcCCCeECCeEEEEEEC
Confidence 345578889999999999999987
No 32
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.78 E-value=0.51 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.4
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.||+|+|...
T Consensus 76 ~A~~Ai~~lng~~~~gr~l~v~~a 99 (112)
T 2dit_A 76 EADYCIQTLDGRWFGGRQITAQAW 99 (112)
T ss_dssp HHHHHHHHSTTCEETTEECEEEEC
T ss_pred HHHHHHHHcCCCEECCcEEEEEEe
Confidence 466789999999999999999986
No 33
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=78.78 E-value=0.32 Score=32.99 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.2
Q ss_pred eeeeeeecCCCceecCc-eeEec
Q 026836 24 FSRFLPNNLNGAQILGR-TIRVD 45 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR-~irVD 45 (232)
++..||..|||..|.|+ +|+|.
T Consensus 59 ~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 59 HAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHHHHTTSSSCCCSSSSCCCCC
T ss_pred HHHHHHHHhcCcccCCceeEEeC
Confidence 45678999999999999 99984
No 34
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=78.63 E-value=0.58 Score=32.33 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.4
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 65 ~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 65 DAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp HHHHHHHHTTEEEETTEEEEEEECS
T ss_pred HHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3556888999999999999999873
No 35
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=78.02 E-value=0.81 Score=34.50 Aligned_cols=25 Identities=36% Similarity=0.881 Sum_probs=21.8
Q ss_pred hhhhHhh-hcCCCCCCCCCccccccc
Q 026836 68 RGVCRAF-QRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~al-q~~~C~~~~~ck~sh~~q 92 (232)
..+|..| +.|.|..|+.|+|+|+..
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4689998 689999999999999854
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=77.72 E-value=0.47 Score=31.89 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.4
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 61 ~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 61 DAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEc
Confidence 345678899999999999999875
No 37
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.57 E-value=0.96 Score=31.81 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.4
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
.+..|| .|||..|.|++|+|....
T Consensus 68 ~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 68 SLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp HHHHHG-GGTTCEETTEECEEEECC
T ss_pred HHHHHH-hhCCCeECCeEEEEEEec
Confidence 455678 899999999999999874
No 38
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=77.51 E-value=0.4 Score=33.57 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.9
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 75 ~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 75 QAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp HHHHHHHHHTTCEETTEECCCCBC
T ss_pred HHHHHHHHhCCCeECCeEEEEEec
Confidence 355688899999999999999876
No 39
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.47 E-value=1 Score=32.26 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=21.4
Q ss_pred hhhhHhhhc-CCCCCCCCCccccccc
Q 026836 68 RGVCRAFQR-GECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq~-~~C~~~~~ck~sh~~q 92 (232)
..||.-|++ |.|. ++.|+|.|...
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~~ 62 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHIDP 62 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred CCCCcccCCCCccC-CCCeeccCCCc
Confidence 358999999 9999 89999999875
No 40
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=77.37 E-value=0.61 Score=35.04 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.||+|+|...
T Consensus 79 ~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 79 ILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp HHHHHHHHTTTEEETTEEEEEEES
T ss_pred HHHHHHHHcCCCEECCeEEEEEEC
Confidence 345688999999999999999887
No 41
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=77.09 E-value=0.46 Score=35.02 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++.-||..|||..+.||+|+|.+.
T Consensus 71 ~A~~Ai~~lnG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 71 DCQKAMQGLTGRKFANRVVVTKYC 94 (105)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHhCCCEeCCCEEEEEEe
Confidence 556799999999999999999886
No 42
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.08 E-value=0.56 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 63 ~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 63 DAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp HHHHHHHHHSSEEETTEEEEEECC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEC
Confidence 456788899999999999999987
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.02 E-value=0.67 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 60 ~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 60 ASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp HHHHHHHTTTTCEETTEECEEEES
T ss_pred HHHHHHHHcCCCEECCEEEEEEEe
Confidence 456688899999999999999987
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=76.88 E-value=0.51 Score=31.56 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+..|||..|.|++|+|.+.
T Consensus 55 ~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 55 DAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhcCCeeCCcEEEEEec
Confidence 345578889999999999999877
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.82 E-value=0.72 Score=32.36 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.2
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
.+..||..|||..|.|++|+|.+...
T Consensus 67 ~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 67 DAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 45678889999999999999998843
No 46
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=76.79 E-value=0.55 Score=33.71 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 79 ~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 79 SAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp HHHHHHHHHTTCEETTEECEEECC
T ss_pred HHHHHHHHcCCCEECCEEEEEEEc
Confidence 355688899999999999999987
No 47
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.68 E-value=0.67 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.5
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 70 ~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 70 SAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp HHHHHHHHTTTEEETTEEEEEEEC
T ss_pred HHHHHHHHcCCCeeCCcEEEEEec
Confidence 355688899999999999999864
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=76.65 E-value=0.61 Score=32.05 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.6
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 69 ~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 69 SVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp HHHHHHHHHTTCEETTEECEEECC
T ss_pred HHHHHHHHhCCCEECCCEEEEEEc
Confidence 345678899999999999999876
No 49
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.62 E-value=0.64 Score=32.24 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 69 ~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 69 EATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp HHHHHHHHTTTCEETTEECEEEES
T ss_pred HHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456688899999999999999986
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=76.56 E-value=0.53 Score=34.36 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.3
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 57 ~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 57 AAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp HHHHHHHHHTTCEETTEECEEEES
T ss_pred HHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999876
No 51
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.10 E-value=0.67 Score=32.52 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 69 ~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 69 DAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp HHHHHHHHTTTCEETTEECEEEES
T ss_pred HHHHHHHHcCCCeeCCcEEEEEEC
Confidence 456688899999999999999987
No 52
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.94 E-value=0.5 Score=33.06 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 68 ~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 68 AAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp HHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEc
Confidence 355688899999999999999987
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=75.91 E-value=0.56 Score=32.63 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 56 ~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 56 SSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCeECCeEEEEEEc
Confidence 355688899999999999999987
No 54
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.67 E-value=0.72 Score=32.25 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 65 ~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 65 DAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp HHHHHHHHTSSEEETTEEEEEEEC
T ss_pred HHHHHHHHhCCCEeCCeEEEEEEc
Confidence 345688899999999999999987
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=75.51 E-value=0.54 Score=33.13 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.9
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..||..|||..|.|++|+|.++
T Consensus 83 a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 83 ALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp HHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHhCCCEeCCcEEEEEEe
Confidence 34578889999999999999876
No 56
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=75.38 E-value=0.59 Score=34.53 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.4
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++.-||.+|||..+.||+|+|.+.
T Consensus 68 ~A~~Ai~~lnG~~~~Gr~i~v~~a 91 (105)
T 2pe8_A 68 SAIKAVVDLNGRYFGGRVVKACFY 91 (105)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHCCCEECCcEEEEEEc
Confidence 456789999999999999999887
No 57
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=77.05 E-value=0.6 Score=33.70 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.1
Q ss_pred eeeeeeeecCCCceecCceeEeccc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
-++..||..|||..|.|++|+|...
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 3567789999999999999999887
No 58
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.99 E-value=0.61 Score=32.57 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 66 ~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 66 DAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCeECCeEEEEEEe
Confidence 355678899999999999999987
No 59
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=74.93 E-value=0.67 Score=31.85 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.5
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 69 ~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 69 EATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp HHHHHHHHHTTCEETTEECEEECC
T ss_pred HHHHHHHHhCCCeECCcEEEEEec
Confidence 345678899999999999999875
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.79 E-value=0.71 Score=31.59 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 69 ~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 69 DAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp HHHHHHHHHTTEEETTEEEEEECC
T ss_pred HHHHHHHHhCCCEECCEEEEEEec
Confidence 455688889999999999999876
No 61
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=74.63 E-value=0.58 Score=31.53 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..|+..|||..|.|+.|+|.+.
T Consensus 60 ~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 60 DAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHcCCCEECCeEEEEEec
Confidence 345678889999999999999876
No 62
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.60 E-value=1.1 Score=30.96 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 62 ~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 62 QAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp HHHHHHHHSTTCEETTEECEEECSS
T ss_pred HHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 4556888999999999999999884
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=74.59 E-value=0.98 Score=32.28 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.0
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
.+..||..|||..|.|++|+|.+...
T Consensus 69 ~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 69 DAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp HHHHHHHHTTTCEETTEECEEEESSC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45668889999999999999999843
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.51 E-value=0.88 Score=32.34 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.5
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
.+..||..|||..|.|++|+|.+..
T Consensus 73 ~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 73 DAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp HHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3556888999999999999999873
No 65
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.29 E-value=0.91 Score=31.68 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.5
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 66 ~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 66 DAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEECC
T ss_pred HHHHHHHHhCCCEECCcEEEEEeCC
Confidence 4566888999999999999999873
No 66
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=74.08 E-value=0.73 Score=32.69 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 80 ~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 80 QALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp HHHHHHHHHTTCEETTEECEEEES
T ss_pred HHHHHHHHcCCCEECCcEEEEEEc
Confidence 355688899999999999999987
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.88 E-value=0.93 Score=32.29 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.0
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
++..||..|||..|.|++|+|.....
T Consensus 77 ~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 77 TAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp HHHHHHHHHTTCEETTEECEEECSSC
T ss_pred HHHHHHHHcCCCccCCCEEEEEECCC
Confidence 45668889999999999999998743
No 68
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=73.85 E-value=0.74 Score=32.88 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.4
Q ss_pred eeeeeeecCCCceecCceeEecccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKY 50 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Y 50 (232)
.+..||..|||..|.|++|+|.+....
T Consensus 74 ~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 74 HARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 355688899999999999999988433
No 69
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.75 E-value=0.88 Score=31.26 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 55 ~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 55 DAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHHhCCCEECCcEEEEEECC
Confidence 4566888999999999999999873
No 70
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.72 E-value=0.49 Score=32.57 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.9
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 59 ~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 59 CARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp HHHHHHHHHTTCCSSSSCCEEEES
T ss_pred HHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345678889999999999999987
No 71
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.47 E-value=0.75 Score=31.75 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.2
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 56 ~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 56 DAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEES
T ss_pred HHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456688899999999999999987
No 72
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=73.37 E-value=0.71 Score=32.78 Aligned_cols=24 Identities=8% Similarity=-0.000 Sum_probs=20.8
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 69 ~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 69 SVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp HHHHHHHHHTTSEETTEECEEEEC
T ss_pred HHHHHHHHcCCCEECCEEEEEEec
Confidence 455688899999999999999876
No 73
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.22 E-value=0.72 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.2
Q ss_pred eeeeeeecCCC-ceecCceeEeccc
Q 026836 24 FSRFLPNNLNG-AQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG-~~v~GR~irVDHv 47 (232)
.+..||..||| ..|.|++|+|...
T Consensus 56 ~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 56 WAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEEC
T ss_pred HHHHHHHHccCCeeECCEEEEEEEc
Confidence 35678889999 9999999999987
No 74
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=72.96 E-value=0.87 Score=32.54 Aligned_cols=25 Identities=16% Similarity=0.099 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|+.|+|.+..
T Consensus 59 ~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 59 DAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp HHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEec
Confidence 4556888999999999999999873
No 75
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.95 E-value=1 Score=31.21 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.5
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 62 ~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 62 HAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp HHHHHHHHTTTEESSSCEEEEEECC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3566888999999999999999873
No 76
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.93 E-value=0.8 Score=31.46 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.5
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 54 ~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 54 AAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp HHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred HHHHHHHHhcCCccCCcEEEEEECC
Confidence 4556888999999999999999873
No 77
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.86 E-value=0.53 Score=34.36 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=21.9
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|.+..
T Consensus 58 ~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 58 EARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred HHHHHHHHhCCCEECCeEEEEEECC
Confidence 4567899999999999999999873
No 78
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=72.85 E-value=0.74 Score=31.73 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+..|||..|.|++|+|.+.
T Consensus 63 ~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 63 SATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEc
Confidence 355688899999999999999887
No 79
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.63 E-value=0.93 Score=32.30 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=21.7
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|.+..
T Consensus 79 ~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 79 IAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp HHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4566888999999999999999883
No 80
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.51 E-value=0.76 Score=32.23 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.9
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
++..||..|||..|.|++|+|.....
T Consensus 67 ~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 67 DAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp HHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred HHHHHHHHcCCCEECCcEEEEEECCc
Confidence 45567888999999999999998843
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=72.46 E-value=0.82 Score=32.82 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.7
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..||..|||..|.|++|+|...
T Consensus 95 A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 95 AQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHHHcCCCEECCEEEEEEec
Confidence 45678899999999999999764
No 82
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=72.40 E-value=0.65 Score=32.66 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 77 ~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 77 EAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEES
T ss_pred HHHHHHHHhcCCEECCcEEEEEee
Confidence 345678899999999999999987
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.21 E-value=0.99 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecC-----ceeEecccc
Q 026836 24 FSRFLPNNLNGAQILG-----RTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~G-----R~irVDHv~ 48 (232)
.+..||..|||..|.| ++|+|....
T Consensus 62 ~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 62 DMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp HHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred HHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4557888999999999 999999873
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=71.64 E-value=0.63 Score=32.56 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.5
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 75 ~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 75 SAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEec
Confidence 455688899999999999999865
No 85
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=71.50 E-value=1.2 Score=33.80 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=23.8
Q ss_pred eeeeeeecCCCceecCceeEecccccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKYKK 52 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Yk~ 52 (232)
++..||..|||..|.|++|+|.....+++
T Consensus 93 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 93 DAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp HHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred HHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 45567888999999999999999855544
No 86
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.30 E-value=0.92 Score=32.34 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.2
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 73 ~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 73 SAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp HHHHHHHHHTTCEETTEECEEECC
T ss_pred HHHHHHHHcCCCEECCcEEEEEec
Confidence 356688899999999999999987
No 87
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.14 E-value=0.86 Score=31.96 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.9
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 67 ~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 67 DADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEc
Confidence 345678899999999999999987
No 88
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=71.02 E-value=0.66 Score=31.68 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred eeeeeecCCCceecCceeEecccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
+..||..|||..|.|++|+|....
T Consensus 55 a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 55 VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred HHHHHHHhCCCEECCeEEEEEEcC
Confidence 667899999999999999999873
No 89
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=70.91 E-value=1 Score=33.28 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.3
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 96 ~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 96 SAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp HHHHHHHHTTTEECSSCEEEEEESS
T ss_pred HHHHHHHHhCCCEECCeEEEEEECC
Confidence 3456888999999999999999873
No 90
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.85 E-value=0.83 Score=32.04 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=20.8
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 69 ~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 69 DADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp HHHHHHHHSSSCBCSSCBCEEEET
T ss_pred HHHHHHHHhCCCeECCeEEEEEEC
Confidence 345678889999999999999987
No 91
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=70.40 E-value=0.7 Score=32.89 Aligned_cols=24 Identities=4% Similarity=0.051 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecC-ceeEeccc
Q 026836 24 FSRFLPNNLNGAQILG-RTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~G-R~irVDHv 47 (232)
++..||..|||..|.| ++|+|...
T Consensus 66 ~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 66 DAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred HHHHHHHHhCCcccCCCeEEEEEEC
Confidence 4556888999999999 99999977
No 92
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.32 E-value=0.84 Score=31.84 Aligned_cols=24 Identities=17% Similarity=0.136 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|...
T Consensus 70 ~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 70 QASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp HHHHHHHHHTTEESSSCEEEEEEC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEC
Confidence 345688899999999999999876
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.25 E-value=0.81 Score=31.94 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 62 ~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 62 TALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHHHHHHSSSBSCSSSCBEEEET
T ss_pred HHHHHHHHhCCCeeCCcEEEEEeC
Confidence 455688899999999999999987
No 94
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=70.24 E-value=0.9 Score=31.58 Aligned_cols=25 Identities=36% Similarity=0.959 Sum_probs=0.0
Q ss_pred hhhhHhhh-cCCCCCCCCCccccccc
Q 026836 68 RGVCRAFQ-RGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq-~~~C~~~~~ck~sh~~q 92 (232)
..+|+.|. .|.|..|..|+|.|+.+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp --------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCC
Confidence 46898665 78899999999999864
No 95
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.20 E-value=1.6 Score=31.91 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=19.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||. |||..|.||+|+|.++
T Consensus 79 ~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 79 DYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp HHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred HHHHHHH-hCCCeECCcEEEEEEC
Confidence 3456778 9999999999999987
No 96
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=70.18 E-value=1.7 Score=31.40 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEecccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKY 50 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Y 50 (232)
++..|| .|||..|.|++|+|.+....
T Consensus 90 ~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 90 SVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred HHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 345677 89999999999999987443
No 97
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=70.05 E-value=0.56 Score=34.33 Aligned_cols=24 Identities=4% Similarity=0.030 Sum_probs=20.2
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.++
T Consensus 63 ~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 63 DMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp HHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred HHHHHHHHhCCCEECCcEeeeEEE
Confidence 345688899999999999888777
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=69.85 E-value=1.9 Score=29.10 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.8
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+ .|||..|.|++|+|...
T Consensus 60 ~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 60 SVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHHHG-GGTTCEETTEECEEEET
T ss_pred HHHHHH-hcCCCEECCcEEEEEEc
Confidence 345678 89999999999999876
No 99
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.56 E-value=1.3 Score=31.49 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.4
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
.+..||..|||..|.|++|+|....
T Consensus 68 ~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 68 EAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 4556888899999999999999873
No 100
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=69.34 E-value=0.77 Score=33.32 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.++
T Consensus 80 ~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 80 CAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp HHHHHHHHHTTCCSSSSCCEEECS
T ss_pred HHHHHHHHcCCCEECCEEEEEEEc
Confidence 445678899999999999999887
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=69.33 E-value=1.1 Score=32.71 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=19.3
Q ss_pred eeeeeeecCCCceecCceeEecc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDH 46 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDH 46 (232)
.+..||..|||..|.|++|+|..
T Consensus 117 ~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 117 DAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp HHHHHHHHSTEEEETTEEEEEEC
T ss_pred HHHHHHHHhCCCEECCEEEEEEe
Confidence 34557789999999999999975
No 102
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=69.26 E-value=0.97 Score=34.04 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
.+..||..|||..|.|++|+|....
T Consensus 100 ~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 100 DAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp HHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred HHHHHHHHhCCCEECCEEEEEEEec
Confidence 4557888999999999999999873
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.26 E-value=1 Score=32.55 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 81 ~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 81 DADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHcCCCEECCEEEEEEEC
Confidence 345688899999999999999876
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=69.07 E-value=1.4 Score=33.09 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=22.9
Q ss_pred eeeeeeecCCCceecCceeEeccccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKYK 51 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Yk 51 (232)
++..||..|||..|.|++|+|.....-+
T Consensus 124 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 124 DAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 4556888999999999999999884433
No 105
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=68.98 E-value=0.8 Score=31.27 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
.+..||..|||..|.|++|+|....
T Consensus 60 ~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 60 VAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp HHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred HHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3456788999999999999998873
No 106
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=68.98 E-value=1.2 Score=34.79 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 111 ~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 111 SVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp HHHHHHHHSTTCEETTEECEEEEC
T ss_pred HHHHHHHHcCCCEECCeEeEEEEc
Confidence 455688999999999999999977
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=68.92 E-value=1.1 Score=32.55 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 77 ~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 77 SAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp HHHHHHHHHTTCEETTEECEEESC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEe
Confidence 355688899999999999999887
No 108
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=68.84 E-value=0.84 Score=31.89 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||. |||..|.|++|+|....
T Consensus 70 ~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 70 DLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp HHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred HHHHHHh-cCCcEECCcEEEEEEcC
Confidence 3456787 99999999999999873
No 109
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=68.78 E-value=0.96 Score=34.27 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..+.||+|+|.+.
T Consensus 67 ~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 67 AAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHhCCCEECCEEEEEEEE
Confidence 566799999999999999999886
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.63 E-value=1.3 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.7
Q ss_pred eeeeeeecCCCceecCce----eEecccc
Q 026836 24 FSRFLPNNLNGAQILGRT----IRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~----irVDHv~ 48 (232)
.+..||..|||..|.|++ |+|.+..
T Consensus 64 ~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 64 TAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp HHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred HHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 456788899999999999 9999873
No 111
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.57 E-value=1.4 Score=31.06 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=19.9
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|| .|||..|.|++|+|...
T Consensus 69 ~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 69 SLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp HHHHHH-GGGTCEETTEECEEEEC
T ss_pred HHHHHH-hcCCCEeCCcEEEEEEc
Confidence 345678 89999999999999987
No 112
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=68.38 E-value=1.1 Score=34.60 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.3
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 126 ~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 126 QALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp HHHHHHHHHTTCEETTEECEEEES
T ss_pred HHHHHHHHhCCCEECCEEEEEEEe
Confidence 456788899999999999999987
No 113
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=68.12 E-value=1.1 Score=36.25 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=22.1
Q ss_pred eeeeeeeecCCCceecCceeEeccc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
-++..||.+|||..|.|++|+|.+.
T Consensus 53 ~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 53 YAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHhCCCEECCceEEEEEc
Confidence 4566799999999999999999987
No 114
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.84 E-value=0.69 Score=32.31 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 66 ~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 66 DAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp HHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred HHHHHHHHhCCCEECCeEEEEEEC
Confidence 346688899999999999999987
No 115
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=67.80 E-value=1.5 Score=33.07 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=23.8
Q ss_pred eeeeeeecCCCceecCceeEeccccccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKYKKK 53 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Yk~~ 53 (232)
++..|+ .|||..|.|++|+|.....|.+.
T Consensus 63 ~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~ 91 (198)
T 2yh0_A 63 ETTQAM-AFDGIIFQGQSLKIRRPHDYQPL 91 (198)
T ss_dssp HHHHHG-GGTTEEETTEEEEEECCCCCCCC
T ss_pred HHHHHH-HhcCCEEcCceEEEeCCCCCCCC
Confidence 456778 89999999999999988666544
No 116
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.79 E-value=1.2 Score=31.91 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|| .|||..|.|++|+|...
T Consensus 79 ~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 79 SVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp GHHHHH-HHTTEEETTEEEEEEEH
T ss_pred HHHHHH-HcCCCEeCCeEEEEEec
Confidence 456788 99999999999999876
No 117
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.71 E-value=1.4 Score=30.09 Aligned_cols=23 Identities=22% Similarity=0.026 Sum_probs=19.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+. |||..|.|+.|+|...
T Consensus 62 ~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 62 EVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp HHHHHHH-SCSEEETTEEEEEEEE
T ss_pred HHHHHHH-hCCceeCCcEEEEEEC
Confidence 3456788 9999999999999876
No 118
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.66 E-value=1.1 Score=31.43 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=21.8
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
++..||..|||..|.|++|+|.....
T Consensus 67 ~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 67 EATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 45567888999999999999998743
No 119
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=67.65 E-value=1.2 Score=31.43 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.8
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 57 ~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 57 GAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEEC
T ss_pred HHHHHHHHHCCCccCCCEEEEEEc
Confidence 345678889999999999999987
No 120
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=67.60 E-value=1.8 Score=30.38 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=17.9
Q ss_pred eeeeeecC-CCceecCceeEeccc
Q 026836 25 SRFLPNNL-NGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNl-NG~~v~GR~irVDHv 47 (232)
+..|+.-| ||+.|.||+|+|.+.
T Consensus 57 A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 57 ATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp HHHHHHTTTTEEEETTEEEEEECC
T ss_pred HHHHHHhcCCCeEECCEEEEEEEc
Confidence 34566644 788999999999987
No 121
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=67.53 E-value=1.1 Score=32.94 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 60 ~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 60 DAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp HHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEC
Confidence 345688899999999999999987
No 122
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=67.28 E-value=0.89 Score=33.02 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..|||..|.|++|+|.+.
T Consensus 76 ~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 76 EAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEES
T ss_pred HHHHHHHHhCCCeeCCeEEEEEEe
Confidence 345578899999999999999988
No 123
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=67.02 E-value=0.66 Score=32.47 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 57 ~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 57 SVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp HHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred HHHHHHHHcCCCeeCCcEEEEEEc
Confidence 455688899999999999999987
No 124
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=66.93 E-value=1.2 Score=34.44 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred eeeeeeecCCCceecC--ceeEeccc
Q 026836 24 FSRFLPNNLNGAQILG--RTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~G--R~irVDHv 47 (232)
.+..|+..|||..|.| ++|+|.+.
T Consensus 74 ~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 74 CAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp HHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred HHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 5677999999999998 69999987
No 125
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.89 E-value=1.8 Score=29.99 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=19.3
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||. |||..|.|++|+|...
T Consensus 57 ~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 57 AREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp HHHHHHT-CSCCEETTEECCCBCS
T ss_pred HHHHHHh-cCCeEECCEEEEEEEC
Confidence 3456777 9999999999999866
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.72 E-value=1.4 Score=29.61 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.3
Q ss_pred eeeeeecC-CCceecCceeEeccc
Q 026836 25 SRFLPNNL-NGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNl-NG~~v~GR~irVDHv 47 (232)
+..||..| ||..|.|++|+|...
T Consensus 61 A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 61 AEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HHHHHHTTTTTCEETTEECCEEEC
T ss_pred HHHHHHHhcCCeeECCCEEEEEec
Confidence 45577788 999999999999864
No 127
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=65.80 E-value=1.4 Score=34.66 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.2
Q ss_pred eeeeeeecCCCceecC--ceeEeccc
Q 026836 24 FSRFLPNNLNGAQILG--RTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~G--R~irVDHv 47 (232)
.+..|+..|||..|.| ++|+|++.
T Consensus 78 ~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 78 SAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp HHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred HHHHHHHHcCCCeecCCCcEEEEEec
Confidence 4567899999999999 99999987
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=65.62 E-value=1.3 Score=35.09 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.4
Q ss_pred eeeeeeeecCCCceecCceeEeccc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
-++..||..|||..|.|++|+|...
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3556789999999999999999865
No 129
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=65.51 E-value=1.1 Score=31.55 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=19.9
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|| .|||..|.|+.|+|.+.
T Consensus 73 ~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 73 SLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp HHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred HHHHHH-hcCCCEECCeEEEEEec
Confidence 455678 89999999999999887
No 130
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=65.47 E-value=1.4 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.8
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
++..||..|||..|.|++|+|..+..
T Consensus 88 ~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 88 DALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp HHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred HHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 35568889999999999999998743
No 131
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=65.25 E-value=1.2 Score=33.75 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.5
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++.-||..|||..+.||+|+|.+.
T Consensus 83 ~A~~Ai~~LnGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 83 ETHKAIQALNGRWFAGRKVVAEVY 106 (118)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHHCCCEECCcEEEEEEc
Confidence 466799999999999999999886
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=65.21 E-value=1.7 Score=32.86 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.0
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
.+..||..|||..|.|++|+|.....
T Consensus 101 ~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 101 DAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp HHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35568889999999999999998843
No 133
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=65.19 E-value=2.6 Score=30.07 Aligned_cols=24 Identities=29% Similarity=0.790 Sum_probs=21.3
Q ss_pred hhhhHhhhc-CCCCCCCCCccccccc
Q 026836 68 RGVCRAFQR-GECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq~-~~C~~~~~ck~sh~~q 92 (232)
..+|.-|++ |.|.. +.|+|.|+..
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~~p 68 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHIDP 68 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCCCC
T ss_pred CCcccccCCCCCCCC-CCeeccCCCc
Confidence 458999999 99999 9999999864
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=65.04 E-value=0.96 Score=34.03 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|.+.
T Consensus 122 ~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 122 DAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp HHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEc
Confidence 345688899999999999999876
No 135
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=64.69 E-value=1.1 Score=33.47 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.2
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 85 ~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 85 SADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp HHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred HHHHHHHHhCCCEECCeEEEEEEe
Confidence 455688899999999999999987
No 136
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.39 E-value=1.1 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.9
Q ss_pred eeeeeeecCCCceec--CceeEeccc
Q 026836 24 FSRFLPNNLNGAQIL--GRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~--GR~irVDHv 47 (232)
.+..||..|||..|. |++|+|.+.
T Consensus 65 ~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 65 AAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp HHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred HHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 355688899999999 999999987
No 137
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=64.10 E-value=1.3 Score=40.52 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.7
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||+.|.|++|.|++..
T Consensus 156 ~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 156 DMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred HHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4556888999999999999999883
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.09 E-value=1.2 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 63 ~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 63 LAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp HHHHHHHHHTTCCBTTBCCEEEES
T ss_pred HHHHHHHHhCCCEeCCceEEEEEc
Confidence 345688899999999999999887
No 139
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.79 E-value=2.6 Score=29.67 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=20.4
Q ss_pred eeeeeeecCC--CceecCceeEecccc
Q 026836 24 FSRFLPNNLN--GAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlN--G~~v~GR~irVDHv~ 48 (232)
.+..||..|| |..|.|++|+|++..
T Consensus 64 ~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 64 AAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp HHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred HHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 4556888895 599999999999873
No 140
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=60.26 E-value=4.2 Score=29.95 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=23.0
Q ss_pred eeeeeeecCCCceecCceeEecccccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKYKK 52 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Yk~ 52 (232)
++..|+ .|||..|.|++|+|.....|.+
T Consensus 63 ~A~~A~-~~~~~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 63 ETTQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp HHHHHG-GGTTCEETTEECEEECCSSCCC
T ss_pred HHHHHH-HhCCcEecCceeeecCCcccCC
Confidence 455677 8999999999999998866644
No 141
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.40 E-value=1.5 Score=30.65 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.9
Q ss_pred eeeeeeecC-CCceecCceeEeccc
Q 026836 24 FSRFLPNNL-NGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNl-NG~~v~GR~irVDHv 47 (232)
.+..||..| ||..|.|++|+|...
T Consensus 70 ~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 70 DAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp HHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred HHHHHHHHhccCCeECCCEEEEEeC
Confidence 355688889 999999999999987
No 142
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=58.70 E-value=2.3 Score=27.90 Aligned_cols=19 Identities=5% Similarity=0.074 Sum_probs=16.0
Q ss_pred eeeecCCCceecCceeEecc
Q 026836 27 FLPNNLNGAQILGRTIRVDH 46 (232)
Q Consensus 27 LAVDNlNG~~v~GR~irVDH 46 (232)
.|+. |||..|.|++|+|.+
T Consensus 56 ~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 56 KVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp HHHS-SSCCCSSSCCCEEEC
T ss_pred HHHH-CCCCEECCEEEEEEe
Confidence 3555 899999999999975
No 143
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.48 E-value=2.1 Score=30.09 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.6
Q ss_pred eeeeeeecCC------CceecCceeEeccc
Q 026836 24 FSRFLPNNLN------GAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlN------G~~v~GR~irVDHv 47 (232)
++..||..|| |..|.|++|+|.+.
T Consensus 69 ~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a 98 (111)
T 1x4h_A 69 AAQKCLAAASLEAEGGGLKLDGRQLKVDLA 98 (111)
T ss_dssp HHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred HHHHHHHHhccccccCCcEEcCEEEEEEEC
Confidence 3456788898 99999999999987
No 144
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=58.05 E-value=2.4 Score=35.06 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.5
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 124 ~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 124 SSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp HHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred HHHHHHHHcCCCeECCEEeEEEECC
Confidence 4556888999999999999999873
No 145
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.58 E-value=1.2 Score=33.10 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=22.5
Q ss_pred eeeeeeecCCC--ceecCceeEecccccccc
Q 026836 24 FSRFLPNNLNG--AQILGRTIRVDHVAKYKK 52 (232)
Q Consensus 24 StiLAVDNlNG--~~v~GR~irVDHv~~Yk~ 52 (232)
.+..||..||| +.|.||+|+|.+...|+.
T Consensus 64 ~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 64 DAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp HHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred HHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 45678898775 569999999999865554
No 146
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=57.15 E-value=1.2 Score=34.26 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|++.
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred HHHHHHHHccCCEeCCcEEEEEEe
Confidence 456688889999999999999987
No 147
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.98 E-value=1.7 Score=30.39 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.9
Q ss_pred eeeeeeecCCCce-ecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQ-ILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~-v~GR~irVDHv 47 (232)
++..||..|||.. |.|++|+|...
T Consensus 63 ~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 63 EQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp HHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred HHHHHHHHccCCcccCCEeEEEEEc
Confidence 3556888999999 99999999987
No 148
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=56.88 E-value=2 Score=31.05 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=19.8
Q ss_pred eeeeeeecCCCc----eecCceeEeccc
Q 026836 24 FSRFLPNNLNGA----QILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~----~v~GR~irVDHv 47 (232)
++.-||+.|||. .|.||+|.|++.
T Consensus 65 ~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 65 DASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp HHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 455688889986 589999999976
No 149
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.93 E-value=2 Score=29.78 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.6
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||. |||..|.|++|+|....
T Consensus 64 ~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 64 SVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp HHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred HHHHHHH-hCCCEECCeEEEEEECC
Confidence 3455676 99999999999998873
No 150
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=54.87 E-value=1.9 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred eeeeeeecCCCceecC---ceeEeccc
Q 026836 24 FSRFLPNNLNGAQILG---RTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~G---R~irVDHv 47 (232)
.+..||..|||..|.| ++|+|...
T Consensus 68 ~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 68 EAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp HHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred HHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 3556888999999998 99999887
No 151
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=54.62 E-value=3.7 Score=35.25 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=22.0
Q ss_pred hhhhHhhhcCCCCCCCCCccccccc
Q 026836 68 RGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
--+|.-|.+|.|..|+.|.|-|..-
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCC
Confidence 3499999999999999999999643
No 152
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=53.58 E-value=1.1 Score=31.33 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|++|+|...
T Consensus 49 ~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 49 DAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp HHHHHHHHHHHSCSSSCCCEEEES
T ss_pred HHHHHHHHHCCCeECCcEEEEEEc
Confidence 455688899999999999999987
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=53.41 E-value=2.8 Score=34.33 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.5
Q ss_pred eeeeeeeecCCCceecC--ceeEeccc
Q 026836 23 IFSRFLPNNLNGAQILG--RTIRVDHV 47 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~G--R~irVDHv 47 (232)
..+..|+.+|||..|.| ++|+|++.
T Consensus 95 ~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 95 VSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp HHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred HHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34667999999999977 99999987
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=53.29 E-value=2.6 Score=33.50 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
.+..||..|||..|.|++|+|..+.
T Consensus 141 ~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 141 DALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp HHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred HHHHHHHHhCCCEECCEEEEEEEec
Confidence 3556888999999999999999873
No 155
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.84 E-value=4.5 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
.+..||..||| .|.|++|+|...
T Consensus 71 ~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 71 AAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp HHHHHHTCSSC-EETTEECEEEES
T ss_pred HHHHHHHhCCC-cCCCEEEEEEEc
Confidence 45568899999 899999999987
No 156
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=49.50 E-value=4.1 Score=33.01 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=21.8
Q ss_pred eeeeeeecCCCceecCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~ 49 (232)
++..||..|||..|.|++|+|.+...
T Consensus 64 ~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 64 SATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 44568889999999999999998733
No 157
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=49.30 E-value=2.6 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=20.9
Q ss_pred eeeeeeecCCCcee---cCceeEecccc
Q 026836 24 FSRFLPNNLNGAQI---LGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v---~GR~irVDHv~ 48 (232)
++..||..|||..| .|++|+|....
T Consensus 67 ~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 67 SALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp HHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 34568889999998 89999998873
No 158
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.61 E-value=4 Score=31.29 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=21.6
Q ss_pred eeeeeeecCCCcee-----cCceeEeccccc
Q 026836 24 FSRFLPNNLNGAQI-----LGRTIRVDHVAK 49 (232)
Q Consensus 24 StiLAVDNlNG~~v-----~GR~irVDHv~~ 49 (232)
.+.-||.+|||..| .|++|.|+++..
T Consensus 75 ~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 75 ESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp HHHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred HHHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence 45678999999998 689999998853
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=47.18 E-value=2.1 Score=31.74 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.4
Q ss_pred eeeeeeecCCCc----eecCceeEeccc
Q 026836 24 FSRFLPNNLNGA----QILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~----~v~GR~irVDHv 47 (232)
.+..||..|||. .|.||+|+|.+.
T Consensus 78 ~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 78 EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 566788999999 999999999987
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.74 E-value=5.9 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=18.6
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..||. |||..|.||.|+|...
T Consensus 74 a~~Al~-~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 74 VKLALK-KDRESMGHRYIEVFKS 95 (118)
T ss_dssp HHHHGG-GTTEEETTEEEEEEEE
T ss_pred HHHHHh-cCCCeECCeEEEEEEC
Confidence 445677 8999999999999876
No 161
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=45.88 E-value=6 Score=32.31 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=19.3
Q ss_pred eeeeee--cCCCceecCceeEeccc
Q 026836 25 SRFLPN--NLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVD--NlNG~~v~GR~irVDHv 47 (232)
+.-||. .|||..|.||+|+|.-=
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred HHHHHHHhhhcCCeecCcEEEEEEC
Confidence 456777 89999999999999754
No 162
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.48 E-value=5.6 Score=29.05 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=18.8
Q ss_pred eeeeeecC--CCceecCceeEeccc
Q 026836 25 SRFLPNNL--NGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNl--NG~~v~GR~irVDHv 47 (232)
+..||..| ||+.|.|++|+|.+.
T Consensus 64 A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 64 AITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp HHHHHHHHHHSCCEETTEECEEEEC
T ss_pred HHHHHHHhccCCceECCcEEEEEEc
Confidence 45577744 789999999999988
No 163
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=44.37 E-value=5.6 Score=29.55 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.2
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..|| .|||..|.|++|+|....
T Consensus 66 ~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 66 DLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp HHHHHH-HGGGEEETTEEEEEECCC
T ss_pred HHHHHH-hcCCCEeCCeEEEEecCC
Confidence 455677 699999999999999874
No 164
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.58 E-value=5 Score=30.28 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=19.7
Q ss_pred eeeeeeecCC--CceecCceeEeccc
Q 026836 24 FSRFLPNNLN--GAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlN--G~~v~GR~irVDHv 47 (232)
++..||..|| |..|.||+|+|...
T Consensus 64 ~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 64 AANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp HHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred HHHHHHHHhccCCceECCEEEEEEEc
Confidence 4567888665 68999999999988
No 165
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=40.55 E-value=3.3 Score=31.11 Aligned_cols=24 Identities=21% Similarity=-0.004 Sum_probs=19.7
Q ss_pred eeeeeeecCCCce--ecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQ--ILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~--v~GR~irVDHv 47 (232)
++.-||+.|||.. |.||+|+|.+.
T Consensus 69 ~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 69 GACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp HHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred HHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4556899999876 77999999876
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=40.48 E-value=6 Score=28.85 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..|+..|||..|.|++|+|.+..
T Consensus 57 ~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 57 DSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4556788899999999999998763
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=39.94 E-value=3.4 Score=33.00 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.7
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..|.|++|+|....
T Consensus 84 ~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 84 QAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred HHHHHHHHhCCCeECCeEEEEEEec
Confidence 4567888999999999999999883
No 168
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.90 E-value=5.2 Score=30.36 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=22.0
Q ss_pred eeeeeeecC--CCceecCceeEecccccccc
Q 026836 24 FSRFLPNNL--NGAQILGRTIRVDHVAKYKK 52 (232)
Q Consensus 24 StiLAVDNl--NG~~v~GR~irVDHv~~Yk~ 52 (232)
++..||..| +++.|.||+|+|.+...++.
T Consensus 74 ~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 74 DAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp HHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred HHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 456788866 46779999999999855544
No 169
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.37 E-value=4.4 Score=28.72 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.4
Q ss_pred eeeeeeecCCCcee--------cCceeEeccc
Q 026836 24 FSRFLPNNLNGAQI--------LGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v--------~GR~irVDHv 47 (232)
.+..||..|||..| .|++|.|.+.
T Consensus 78 ~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a 109 (114)
T 1x5o_A 78 KCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFS 109 (114)
T ss_dssp HHHHHHHHHBTCCCCCCTTSCCCSSCBEEEEC
T ss_pred HHHHHHHHhCCCEEcCCccccCCCCceeEEcc
Confidence 35567889999999 6888999876
No 170
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.30 E-value=1.1 Score=30.21 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=19.6
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||..|||..|.|+.|+|..-
T Consensus 59 ~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 59 AAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp HHHHHHHHHHHHTCCEESCCSSCC
T ss_pred HHHHHHHHhcCCeEeeEEEeecCC
Confidence 355678889999999999998753
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=39.02 E-value=6.5 Score=28.39 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.3
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..|+..|||..|.|++|+|....
T Consensus 53 ~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 53 DANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCccCCCeeEEEEcC
Confidence 4556788999999999999998874
No 172
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.82 E-value=7.2 Score=27.20 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..||.. ||..|.|++|+|...
T Consensus 70 ~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 70 CVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp HHHHHHHH-CSEEETTEEEBCCCS
T ss_pred HHHHHHHh-CCCeECCEEEEEEEc
Confidence 34556777 999999999999887
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=38.08 E-value=6.9 Score=28.29 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.6
Q ss_pred eeeeeeeecCCCceecCceeEecccc
Q 026836 23 IFSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 23 ~StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
-++..|+..|||..|.|++|+|.+..
T Consensus 55 ~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 55 KDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCccCCceEEEEecC
Confidence 34567788899999999999998773
No 174
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.20 E-value=11 Score=27.94 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=17.6
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
...|| .|||..|.||.|.|.-.
T Consensus 69 a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 69 TFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHH-HTTTEEETTEEEEEEEC
T ss_pred HHHHH-hcCCCeECCeEEEEEEC
Confidence 34566 79999999999999554
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=36.99 E-value=7.3 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+..|||..|.|++|+|.+.
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCccCCeEEEEEEe
Confidence 456688899999999999999887
No 176
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.40 E-value=4.7 Score=29.23 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=20.9
Q ss_pred eeeeeeecCCCceecCceeEeccccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKYK 51 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Yk 51 (232)
++..||. +||..|.|++|.|.....|.
T Consensus 64 ~a~~Ai~-~~~~~~~gr~l~V~~~~~~~ 90 (103)
T 1s79_A 64 SAKKFVE-TPGQKYKETDLLILFKDDYF 90 (103)
T ss_dssp HHHHHHT-SSCCCCTTTTCEEEEHHHHH
T ss_pred HHHHHHH-cCCCEECCEEEEEEEchHHH
Confidence 3445777 89999999999998765543
No 177
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.98 E-value=11 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.1
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..||.. ||..|.||+|+|..+
T Consensus 70 a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 70 ARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp HHHHGGG-CSEEETTEEEEEEEE
T ss_pred HHHHHHh-CCCccCCeEEEEEEC
Confidence 3456666 999999999999887
No 178
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.98 E-value=12 Score=26.66 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=18.3
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..||.. ||..|.|++|+|...
T Consensus 82 a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 82 VDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHHTS-CSEEETTEEEEEECC
T ss_pred HHHHHHh-CCcEECCEEEEEEEC
Confidence 4456666 999999999999887
No 179
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=35.31 E-value=6.1 Score=30.15 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+..|||..|.|++|+|.+.
T Consensus 53 ~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 53 QAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp HHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred HHHHHHHHhCCCeecCeEEEEEEe
Confidence 455688899999999999999987
No 180
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=35.09 E-value=8.2 Score=29.76 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=18.9
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..||. |||..|.||+|+|...
T Consensus 101 a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 101 VKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp HHHHHT-TTEEESSSSEEEEEEC
T ss_pred HHHHHh-cCCCEECCEEEEEEEC
Confidence 446777 9999999999999876
No 181
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=34.07 E-value=6.5 Score=28.00 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=19.0
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+. |||..|.||.|+|...
T Consensus 67 ~a~~Al~-~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 67 DVQKALE-KHRMYMGQRYVEVYEI 89 (107)
T ss_dssp HHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred HHHHHHH-hCcceeCCeEEEEEEC
Confidence 3456777 9999999999999876
No 182
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.55 E-value=5.9 Score=30.35 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=19.7
Q ss_pred eeeeeeecCC--CceecCceeEeccc
Q 026836 24 FSRFLPNNLN--GAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlN--G~~v~GR~irVDHv 47 (232)
++..||..|| |+.|.|++|+|...
T Consensus 79 ~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 79 AANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp HHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred HHHHHHHHhccCCceECCeEEEEEEc
Confidence 4556788776 57899999999998
No 183
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.20 E-value=12 Score=26.83 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=18.0
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..|| .+||..|.||+|+|...
T Consensus 68 a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 68 AVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp HHHHH-TTSSCCSSSSCCEEEEE
T ss_pred HHHHH-HhCCCeECCcEEEEEEC
Confidence 44567 57999999999999765
No 184
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=29.96 E-value=13 Score=32.62 Aligned_cols=28 Identities=29% Similarity=0.633 Sum_probs=22.6
Q ss_pred hhhHhhhcCCCC----CCCCCcccccccccCC
Q 026836 69 GVCRAFQRGECT----RGDGCKFSHNEQRAAN 96 (232)
Q Consensus 69 ~v~~alq~~~C~----~~~~ck~sh~~q~~~~ 96 (232)
-+|+-|.-|.|. .+..|||||+..++-|
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N 121 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQN 121 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHH
T ss_pred eechhhhcCcCCcccCCCCCcccccccCchhH
Confidence 478889999993 4588999999987654
No 185
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=28.79 E-value=18 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=15.6
Q ss_pred eeeeecCCCceecCceeEecc
Q 026836 26 RFLPNNLNGAQILGRTIRVDH 46 (232)
Q Consensus 26 iLAVDNlNG~~v~GR~irVDH 46 (232)
..|+ .+||..|.|++|+|..
T Consensus 67 ~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 67 EKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp HHHH-HSSCEEETTEEEEEEE
T ss_pred HHHH-HhCCCEECCEEEEEEe
Confidence 3456 4688899999999974
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=28.19 E-value=11 Score=28.66 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=21.6
Q ss_pred eeeeeeecCCCceecCceeEeccccccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVAKYK 51 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~~Yk 51 (232)
++..|+..|||..|.|++|+|.....+.
T Consensus 82 ~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 82 AAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 4566788899999999999998775443
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=27.74 E-value=13 Score=30.30 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=19.8
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..|+..|||..|.|++|+|...
T Consensus 71 A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 71 AEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp HHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHcCCcEECCceeEeeec
Confidence 44577899999999999999876
No 188
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.72 E-value=5.3 Score=29.27 Aligned_cols=25 Identities=8% Similarity=-0.067 Sum_probs=19.4
Q ss_pred eeeeeeecCCC--ceecCceeEecccc
Q 026836 24 FSRFLPNNLNG--AQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG--~~v~GR~irVDHv~ 48 (232)
++..||..||| +.|.|++|+|.+..
T Consensus 63 ~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 63 SAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp HHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred HHHHHHHHhccCCceECCEEEEEEEcc
Confidence 45668887755 56999999999883
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.12 E-value=13 Score=24.08 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=18.7
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+..|| ..|.|++|+|...
T Consensus 54 ~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 54 GVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHhCC-CccCCEEEEEEec
Confidence 4556788888 9999999999754
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=25.66 E-value=15 Score=29.69 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.1
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..|+..|||..|.|++|.|....
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4456788999999999999998873
No 191
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold complementation; 1.78A {Salmonella typhimurium} SCOP: b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A 2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Probab=24.64 E-value=48 Score=27.31 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=36.3
Q ss_pred ceEEEeecccceeeeecceeeeeeeecCCCceecCceeEeccc
Q 026836 5 KIRLTFTSAASLSISLKAIFSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~StiLAVDNlNG~~v~GR~irVDHv 47 (232)
..-++|++.--|+++|.+.+.+.|=.|-+|+.|. .|.|+-+
T Consensus 5 SvDI~Fa~P~~Lt~sl~pV~GL~aG~~~~~~~IA--~ltV~st 45 (137)
T 2co3_A 5 SVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIA--KLVVNST 45 (137)
T ss_dssp EEEEEEBSCCSCEEEEEECTTCBSEECCTTCEEE--EEEEECS
T ss_pred eEEEeeCChhHeEEEEeecCccccCCCCCCcEEE--EEEEccc
Confidence 4568999999999999999999999999999998 5667764
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=23.65 E-value=17 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.4
Q ss_pred eeeeeeecCCCceecCceeEeccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv 47 (232)
++..|+..|||..|.|++|.|...
T Consensus 171 ~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEC
Confidence 445677889999999999999876
No 193
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=22.59 E-value=12 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.2
Q ss_pred eeeeeeecCCCceecCceeEecccc
Q 026836 24 FSRFLPNNLNGAQILGRTIRVDHVA 48 (232)
Q Consensus 24 StiLAVDNlNG~~v~GR~irVDHv~ 48 (232)
++..||..|||..+.|+.|+|.+..
T Consensus 69 ~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 69 DAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhhhhhcCCccccccccc
Confidence 4556888999999999999998773
No 194
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=22.47 E-value=32 Score=30.24 Aligned_cols=24 Identities=38% Similarity=0.719 Sum_probs=19.9
Q ss_pred hhhhHhhhcCCCCCCCCCccccccc
Q 026836 68 RGVCRAFQRGECTRGDGCKFSHNEQ 92 (232)
Q Consensus 68 ~~v~~alq~~~C~~~~~ck~sh~~q 92 (232)
--||..|.+|+|.- ..|+-+|+-.
T Consensus 175 LHIC~~Fl~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 175 LHICEHFTRGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp BCSCHHHHTTCCCC-SSCSSCCCTT
T ss_pred eeccchhhcCCcCC-CCccCccCcc
Confidence 35788999999998 7999999864
No 195
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=22.16 E-value=16 Score=28.31 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=18.6
Q ss_pred eeeeeecCCCceecCceeEeccc
Q 026836 25 SRFLPNNLNGAQILGRTIRVDHV 47 (232)
Q Consensus 25 tiLAVDNlNG~~v~GR~irVDHv 47 (232)
+..|| .|||..|.||+|.|...
T Consensus 99 A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 99 AVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp HHHHT-TCCSCSSSSCCCCCEEC
T ss_pred HHHHH-hhCCCEECCEEEEEEEC
Confidence 44577 89999999999999776
No 196
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=21.92 E-value=30 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=24.2
Q ss_pred hhhhhHhhhcCC-CCCCCCCcccccccccCC
Q 026836 67 ERGVCRAFQRGE-CTRGDGCKFSHNEQRAAN 96 (232)
Q Consensus 67 ~~~v~~alq~~~-C~~~~~ck~sh~~q~~~~ 96 (232)
...||..|-.-+ |-.|.-|.++||.+-+.+
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~~ 49 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGPSS 49 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCCCC
Confidence 456888887766 999999999999876543
Done!