Your job contains 1 sequence.
>026839
MAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAV
NRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLE
KSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACV
YDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETIAILEKHSLVEEPAAG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026839
(232 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175173 - symbol:AT5G60590 "AT5G60590" species... 860 5.4e-86 1
UNIPROTKB|Q0VC80 - symbol:YRDC "YrdC domain-containing pr... 484 3.8e-46 1
ZFIN|ZDB-GENE-070410-65 - symbol:zgc:162301 "zgc:162301" ... 482 6.2e-46 1
UNIPROTKB|Q86U90 - symbol:YRDC "YrdC domain-containing pr... 476 2.7e-45 1
UNIPROTKB|E2R8D0 - symbol:YRDC "Uncharacterized protein" ... 475 3.4e-45 1
UNIPROTKB|F1NJF5 - symbol:YRDC "Uncharacterized protein" ... 466 3.1e-44 1
MGI|MGI:2387201 - symbol:Yrdc "yrdC domain containing (E.... 464 5.0e-44 1
RGD|708492 - symbol:Yrdc "yrdC domain containing (E.coli)... 453 7.3e-43 1
FB|FBgn0061361 - symbol:CG33786 species:7227 "Drosophila ... 420 2.3e-39 1
UNIPROTKB|Q2GG33 - symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC f... 274 6.8e-24 1
UNIPROTKB|Q81JX5 - symbol:BAS5174 "Sua5/yciO/yrdC/ywlC fa... 274 6.8e-24 1
TIGR_CMR|BA_5568 - symbol:BA_5568 "sua5/yciO/yrdC/ywlC fa... 274 6.8e-24 1
TIGR_CMR|ECH_0802 - symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC ... 274 6.8e-24 1
UNIPROTKB|Q3Z887 - symbol:DET0835 "Sua5/YciO/YrdC/YwlC fa... 271 1.4e-23 1
TIGR_CMR|DET_0835 - symbol:DET_0835 "Sua5/YciO/YrdC/YwlC ... 271 1.4e-23 1
UNIPROTKB|Q9KT26 - symbol:VC1079 "Putative uncharacterize... 270 1.8e-23 1
TIGR_CMR|VC_1079 - symbol:VC_1079 "conserved hypothetical... 270 1.8e-23 1
UNIPROTKB|Q71WN7 - symbol:LMOf2365_2514 "Sua5/YciO/YrdC/Y... 251 1.9e-21 1
UNIPROTKB|Q2GJU2 - symbol:APH_0782 "Sua5/YciO/YrdC/YwlC f... 245 8.0e-21 1
UNIPROTKB|Q3A930 - symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC f... 245 8.0e-21 1
TIGR_CMR|APH_0782 - symbol:APH_0782 "Sua5/YciO/YrdC/YwlC ... 245 8.0e-21 1
TIGR_CMR|CHY_2561 - symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC ... 245 8.0e-21 1
UNIPROTKB|Q2GDI6 - symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC f... 242 1.7e-20 1
TIGR_CMR|NSE_0579 - symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC ... 242 1.7e-20 1
UNIPROTKB|Q74CS6 - symbol:yrdC "tRNA (N6-threonylcarbamyl... 219 4.6e-18 1
TIGR_CMR|GSU_1596 - symbol:GSU_1596 "Sua5/YciO/YrdC/YwlC ... 219 4.6e-18 1
UNIPROTKB|Q5LX83 - symbol:SPO0297 "Sua5/YciO/YrdC family ... 218 5.8e-18 1
TIGR_CMR|SPO_0297 - symbol:SPO_0297 "Sua5/YciO/YrdC famil... 218 5.8e-18 1
UNIPROTKB|Q10618 - symbol:MT1340 "Uncharacterized protein... 213 2.0e-17 1
ASPGD|ASPL0000000720 - symbol:AN10771 species:162425 "Eme... 218 2.3e-17 1
UNIPROTKB|Q0C144 - symbol:HNE_1848 "Sua5/YciO/YrdC/YwlC f... 205 1.5e-16 1
CGD|CAL0002177 - symbol:orf19.7088 species:5476 "Candida ... 207 2.6e-16 1
SGD|S000003137 - symbol:SUA5 "Single-stranded telomeric D... 202 1.3e-15 1
UNIPROTKB|Q8ECV7 - symbol:yciO "RNA binding protein YciO"... 194 2.0e-15 1
TIGR_CMR|SO_3016 - symbol:SO_3016 "Sua5/YciO/YrdC/YwlC fa... 194 2.0e-15 1
UNIPROTKB|Q47YC6 - symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC f... 185 1.8e-14 1
TIGR_CMR|CPS_3520 - symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC ... 185 1.8e-14 1
UNIPROTKB|Q605R9 - symbol:MCA2209 "Sua5/YciO/YrdC/YwlC fa... 181 4.9e-14 1
UNIPROTKB|Q8EKQ3 - symbol:rimN "tRNA threonylcarbamoylade... 177 1.3e-13 1
TIGR_CMR|SO_0037 - symbol:SO_0037 "Sua5/YciO/YrdC/YwlC fa... 177 1.3e-13 1
UNIPROTKB|Q83D35 - symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC f... 176 1.6e-13 1
TIGR_CMR|CBU_0909 - symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC ... 176 1.6e-13 1
UNIPROTKB|Q9KVT5 - symbol:rimN "tRNA threonylcarbamoylade... 165 2.4e-12 1
TIGR_CMR|VC_0054 - symbol:VC_0054 "Sua5/YciO/YrdC family ... 165 2.4e-12 1
UNIPROTKB|Q885M0 - symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC... 163 3.9e-12 1
UNIPROTKB|Q9KSS8 - symbol:VC_1178 "Putative uncharacteriz... 160 8.2e-12 1
TIGR_CMR|VC_1178 - symbol:VC_1178 "conserved hypothetical... 160 8.2e-12 1
UNIPROTKB|Q603G8 - symbol:rimN "tRNA threonylcarbamoylade... 153 4.5e-11 1
UNIPROTKB|Q48AU1 - symbol:rimN "tRNA threonylcarbamoylade... 151 7.4e-11 1
TIGR_CMR|CPS_0027 - symbol:CPS_0027 "putative RNA-binding... 151 7.4e-11 1
UNIPROTKB|P45748 - symbol:tsaC "protein involved in synth... 146 2.5e-10 1
UNIPROTKB|Q88B46 - symbol:rimN "tRNA threonylcarbamoylade... 145 3.3e-10 1
UNIPROTKB|F1NT09 - symbol:LOC428714 "Uncharacterized prot... 163 7.8e-10 1
POMBASE|SPCC895.03c - symbol:SPCC895.03c "SUA5/yciO/yrdC ... 103 1.8e-09 2
DICTYBASE|DDB_G0278955 - symbol:DDB_G0278955 "YrdC domain... 150 1.6e-08 1
ZFIN|ZDB-GENE-030131-7332 - symbol:wu:fj08f03 "wu:fj08f03... 148 9.0e-08 1
UNIPROTKB|Q8X849 - symbol:hypF "Transcriptional regulator... 143 3.3e-07 1
TAIR|locus:2078668 - symbol:AT3G01920 species:3702 "Arabi... 137 3.7e-07 1
UNIPROTKB|P30131 - symbol:hypF "hydrogenase maturation pr... 141 5.7e-07 1
TIGR_CMR|GSU_0306 - symbol:GSU_0306 "hydrogenase maturati... 140 7.8e-07 1
UNIPROTKB|G4MQP5 - symbol:MGG_16276 "Uncharacterized prot... 130 5.8e-06 1
TIGR_CMR|CJE_0725 - symbol:CJE_0725 "[NiFe] hydrogenase m... 127 2.5e-05 1
UNIPROTKB|Q83AA2 - symbol:rimN "tRNA threonylcarbamoylade... 113 5.9e-05 1
TIGR_CMR|CBU_2003 - symbol:CBU_2003 "Sua5/YciO/YrdC/YwlC ... 113 5.9e-05 1
GENEDB_PFALCIPARUM|PFL0175c - symbol:PFL0175c "hypothetic... 116 0.00033 1
UNIPROTKB|Q8I610 - symbol:PFL0175c "Conserved Plasmodium ... 116 0.00033 1
UNIPROTKB|Q81NA2 - symbol:hypF "[NiFe] hydrogenase matura... 114 0.00088 1
TIGR_CMR|BA_3313 - symbol:BA_3313 "hydrogenase maturation... 114 0.00088 1
>TAIR|locus:2175173 [details] [associations]
symbol:AT5G60590 "AT5G60590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP002688 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00057 OMA:MSPARPC IPI:IPI00517786
RefSeq:NP_974970.1 UniGene:At.19096 ProteinModelPortal:F4K0E6
SMR:F4K0E6 PRIDE:F4K0E6 EnsemblPlants:AT5G60590.2 GeneID:836180
KEGG:ath:AT5G60590 Uniprot:F4K0E6
Length = 288
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 168/228 (73%), Positives = 195/228 (85%)
Query: 1 MAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAV 60
M +SLE + V +K+ LV PATEA+A+EAI+A+K+ KVIAVPTDTLYGFACDACS EAV
Sbjct: 50 MVWSLERAETCVVSKSCLVHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAV 109
Query: 61 NRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLE 120
+RIYEIKGRK TSPLAICVGDV DI R A T HLPHGLLDSLLPGPVT+VL RGESS LE
Sbjct: 110 SRIYEIKGRKLTSPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILE 169
Query: 121 KSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACV 180
KSLNPG+ +IGVRVPD F+R ++RG S LALTSANL+G SSV VKDFENLW+ CA V
Sbjct: 170 KSLNPGIGTIGVRVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYV 229
Query: 181 YDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETIAILEKHSLVEE 228
YDGG+LPSGRAGST+VDLT++GK+KI+RPGSAK+ T+AILEK+ L EE
Sbjct: 230 YDGGLLPSGRAGSTIVDLTKVGKYKIIRPGSAKQATVAILEKYLLEEE 277
>UNIPROTKB|Q0VC80 [details] [associations]
symbol:YRDC "YrdC domain-containing protein, mitochondrial"
species:9913 "Bos taurus" [GO:0016020 "membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005739 GO:GO:0016020 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051 eggNOG:COG0009
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 EMBL:BC120307
IPI:IPI00687357 RefSeq:NP_001069018.1 UniGene:Bt.61252
ProteinModelPortal:Q0VC80 STRING:Q0VC80 PRIDE:Q0VC80
Ensembl:ENSBTAT00000008529 GeneID:512062 KEGG:bta:512062 CTD:79693
HOGENOM:HOG000239829 HOVERGEN:HBG055700 InParanoid:Q0VC80
OMA:MSPARPC OrthoDB:EOG4KD6N1 NextBio:20870233 Uniprot:Q0VC80
Length = 276
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 103/215 (47%), Positives = 141/215 (65%)
Query: 23 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV 82
TEA A+ L+ G V+AVPTDTLYG AC A SEA+ +Y +KGR T PLA+C+G V
Sbjct: 65 TEA-LRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRV 123
Query: 83 SDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRV 142
+D+ R+ +P GLL LLPGPVT+V+ R E N K LNP +G+R+PD F++
Sbjct: 124 ADVYRYCHV-RVPEGLLKDLLPGPVTLVMERSEELN--KDLNPFTPLVGIRIPDHAFMQD 180
Query: 143 IARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSG-----RAGSTVVD 197
+A+ LALTSANL+ Q SS++V++F++LW + + DGG + G R GSTVVD
Sbjct: 181 LAQMFGGPLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVD 240
Query: 198 LTRLGKFKILRPGSAKEETIAILEKHSLVEEPAAG 232
L+ GKF I+RPG A E T AIL+++ L+ P+ G
Sbjct: 241 LSVPGKFGIIRPGCALESTSAILQEYGLL--PSHG 273
>ZFIN|ZDB-GENE-070410-65 [details] [associations]
symbol:zgc:162301 "zgc:162301" species:7955 "Danio
rerio" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 ZFIN:ZDB-GENE-070410-65
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 EMBL:CU855952
IPI:IPI00632527 Ensembl:ENSDART00000060729 Bgee:F1R994
Uniprot:F1R994
Length = 263
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 100/201 (49%), Positives = 139/201 (69%)
Query: 31 IQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAV 90
+ ALK G+V+AVPTDT+YG AC A +SEA+ R+Y+IKGR PLAICVG++ DI ++
Sbjct: 63 VNALKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCK 122
Query: 91 TDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESA 150
+ LL LLPGPVT+VL R S+ L LNP + IGVR+PD F+R + + ++
Sbjct: 123 VS-VKDRLLRDLLPGPVTLVLER--SATLNGDLNPFTKLIGVRIPDHPFMRRLCQMCDTP 179
Query: 151 LALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPS-GRAGSTVVDLTRLGKFKILRP 209
LALTSAN++ Q S+V+ +FE+LW R A V DGG + R GSTVVDL+ G+++I+RP
Sbjct: 180 LALTSANVSTQSSTVAANEFEDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRIIRP 239
Query: 210 GSAKEETIAILE-KHSLVEEP 229
G A T+ ILE ++ L+E+P
Sbjct: 240 GCALSATVQILEGRYGLLEDP 260
>UNIPROTKB|Q86U90 [details] [associations]
symbol:YRDC "YrdC domain-containing protein, mitochondrial"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IDA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005739 GO:GO:0016020
EMBL:CH471059 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
EMBL:AL929472 GO:GO:0051051 eggNOG:COG0009 TIGRFAMs:TIGR00057
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
OrthoDB:EOG4KD6N1 EMBL:AY172561 EMBL:BC008984 EMBL:BC067857
EMBL:BC068057 EMBL:BC080186 EMBL:AY286019 EMBL:AY286020
EMBL:AF250397 EMBL:AK027129 IPI:IPI00384180 RefSeq:NP_078916.3
UniGene:Hs.301564 ProteinModelPortal:Q86U90 SMR:Q86U90
STRING:Q86U90 PhosphoSite:Q86U90 DMDM:74750410 PaxDb:Q86U90
PRIDE:Q86U90 Ensembl:ENST00000373044 GeneID:79693 KEGG:hsa:79693
UCSC:uc001cca.1 GeneCards:GC01M038268 H-InvDB:HIX0023600
HGNC:HGNC:28905 HPA:HPA030147 MIM:612276 neXtProt:NX_Q86U90
PharmGKB:PA142670553 InParanoid:Q86U90 GenomeRNAi:79693
NextBio:68972 Bgee:Q86U90 CleanEx:HS_YRDC Genevestigator:Q86U90
Uniprot:Q86U90
Length = 279
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 103/215 (47%), Positives = 140/215 (65%)
Query: 23 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV 82
TEA A+ L+ G V+AVPTDTLYG AC A S A+ +Y +KGR PLA+C+G V
Sbjct: 67 TEA-LRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 125
Query: 83 SDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRV 142
+D+ R+ +P GLL LLPGPVT+V+ R E N K LNP +G+R+PD F++
Sbjct: 126 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEELN--KDLNPFTPLVGIRIPDHAFMQD 182
Query: 143 IARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSG-----RAGSTVVD 197
+A+ E LALTSANL+ Q SS++V++F++LW + + V DGG + G R GSTVVD
Sbjct: 183 LAQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVD 242
Query: 198 LTRLGKFKILRPGSAKEETIAILE-KHSLVEEPAA 231
L+ GKF I+RPG A E T AIL+ K+ L+ A+
Sbjct: 243 LSVPGKFGIIRPGCALESTTAILQQKYGLLPSHAS 277
>UNIPROTKB|E2R8D0 [details] [associations]
symbol:YRDC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 OMA:MSPARPC
EMBL:AAEX03009595 RefSeq:XP_003639549.1 Ensembl:ENSCAFT00000005221
GeneID:100855794 KEGG:cfa:100855794 Uniprot:E2R8D0
Length = 274
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 103/216 (47%), Positives = 141/216 (65%)
Query: 23 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV 82
TEA A+ L++G V+ VPTDTLYG AC A S A++ +Y +KGR H PLA+C+G V
Sbjct: 60 TEA-LRAAVSELRSGAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRV 118
Query: 83 SDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRV 142
+D+ R+ +P GLL LLPGPVT+VL R S L + LNP +GVR+PD F++
Sbjct: 119 ADVYRYCRVS-VPEGLLRDLLPGPVTLVLER--SQELNRDLNPCTPLVGVRIPDHAFIQD 175
Query: 143 IARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSG-----RAGSTVVD 197
+A+ LALTSANL+ Q SS++V++F++LW + + V DGG + G R GSTVVD
Sbjct: 176 LAQVFGEPLALTSANLSSQASSLTVEEFQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVD 235
Query: 198 LTRLGKFKILRPGSAKEETIAIL-EKHSLVEEPAAG 232
L+ GKF I+RPG A E T AIL +K+ L+ +G
Sbjct: 236 LSVPGKFGIIRPGCALESTTAILRQKYGLLPSHGSG 271
>UNIPROTKB|F1NJF5 [details] [associations]
symbol:YRDC "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 GO:GO:0051051 TIGRFAMs:TIGR00057
GeneTree:ENSGT00390000015364 OMA:MSPARPC EMBL:AADN02043911
IPI:IPI00573762 Ensembl:ENSGALT00000002509 Uniprot:F1NJF5
Length = 259
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 102/205 (49%), Positives = 134/205 (65%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ AL+ G ++AVPTDT+YG AC A S AV IY +KGR T PLAIC+GDV I R+
Sbjct: 56 AVGALQEGGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEHIYRYC 115
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
+ +P LL LLPGPVT+VL R E N K LNP +GVR+P+ F+R +AR
Sbjct: 116 HVN-VPDELLQDLLPGPVTLVLKRSEELN--KDLNPFTSLVGVRIPNHPFIRELARACPG 172
Query: 150 ALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKF 204
LALTSAN++ Q S+++V +F++LW + + V DGG + P R GSTVVDL+ GKF
Sbjct: 173 PLALTSANVSSQASTLTVSEFQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVDLSVSGKF 232
Query: 205 KILRPGSAKEETIAIL-EKHSLVEE 228
I+RPG A T+ IL +K+ LV E
Sbjct: 233 TIIRPGCALTSTVEILRQKYGLVPE 257
>MGI|MGI:2387201 [details] [associations]
symbol:Yrdc "yrdC domain containing (E.coli)" species:10090
"Mus musculus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0016020 "membrane"
evidence=IDA] [GO:0051051 "negative regulation of transport"
evidence=ISA] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
MGI:MGI:2387201 GO:GO:0005739 GO:GO:0016020 EMBL:AL606933
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
EMBL:AK153627 EMBL:AY283537 EMBL:BC023823 IPI:IPI00229852
RefSeq:NP_705794.2 UniGene:Mm.258568 ProteinModelPortal:Q3U5F4
SMR:Q3U5F4 STRING:Q3U5F4 PhosphoSite:Q3U5F4 PaxDb:Q3U5F4
PRIDE:Q3U5F4 Ensembl:ENSMUST00000102628 GeneID:230734
KEGG:mmu:230734 UCSC:uc008urf.2 InParanoid:Q3U5F4 ChiTaRS:YRDC
NextBio:380087 Bgee:Q3U5F4 Genevestigator:Q3U5F4 Uniprot:Q3U5F4
Length = 280
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 102/216 (47%), Positives = 139/216 (64%)
Query: 23 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV 82
TEA A+ L+ G V+AVPTDTLYG AC A SS A++ +Y +KGR PLA+C+G V
Sbjct: 68 TEA-LRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRV 126
Query: 83 SDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRV 142
+D+ R+ +P LL+ L PGPVT+V+ R E N K LNP +G+R+PD F+
Sbjct: 127 ADVYRYCQV-RVPRELLEDLFPGPVTLVMERSEELN--KDLNPFTRLVGIRIPDHAFMLD 183
Query: 143 IARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVD 197
+A+ LALTSANL+ Q SS+SV++F++LW + V DGG + P R GSTVVD
Sbjct: 184 LAQMFGGPLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVD 243
Query: 198 LTRLGKFKILRPGSAKEETIAILE-KHSLVEEPAAG 232
L+ GKF I+RPG A E T +IL+ K+ L+ P+ G
Sbjct: 244 LSVPGKFGIIRPGCALENTTSILQQKYGLL--PSQG 277
>RGD|708492 [details] [associations]
symbol:Yrdc "yrdC domain containing (E.coli)" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016020
"membrane" evidence=IEA;ISO] [GO:0051051 "negative regulation of
transport" evidence=IEA;ISO] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 RGD:708492 GO:GO:0005739 GO:GO:0016020
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
OrthoDB:EOG4KD6N1 EMBL:BC088428 EMBL:BC099797 IPI:IPI00654465
RefSeq:NP_783194.2 UniGene:Rn.9475 ProteinModelPortal:Q499R4
STRING:Q499R4 PhosphoSite:Q499R4 Ensembl:ENSRNOT00000039870
GeneID:319113 KEGG:rno:319113 UCSC:RGD:708492 InParanoid:Q5I0E4
NextBio:672105 Genevestigator:Q499R4 Uniprot:Q499R4
Length = 280
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 101/216 (46%), Positives = 137/216 (63%)
Query: 23 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV 82
TEA A+ L+ G V+AVPTDTLYG AC A S A++ +Y +KGR PLA+C+G V
Sbjct: 68 TEA-LRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRV 126
Query: 83 SDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRV 142
+D+ R+ +P LL+ L PGPVT+V+ R E N K LNP +G+R+PD F+
Sbjct: 127 ADVYRYCQV-RVPRELLEDLFPGPVTLVMERSEELN--KDLNPFTPLVGIRIPDHAFMLD 183
Query: 143 IARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVD 197
+A+ LALTSANL+ Q SS+SV++F++LW + V DGG + P R GSTVVD
Sbjct: 184 LAQMFGGPLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVD 243
Query: 198 LTRLGKFKILRPGSAKEETIAILE-KHSLVEEPAAG 232
L+ GKF I+R G A E T AIL+ K+ L+ P+ G
Sbjct: 244 LSVPGKFGIIRSGCALENTTAILQGKYGLL--PSQG 277
>FB|FBgn0061361 [details] [associations]
symbol:CG33786 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=ISS] [GO:0045182 "translation
regulator activity" evidence=ISS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE013599 GO:GO:0003899 GO:GO:0032774
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
OMA:MSPARPC UniGene:Dm.1509 EMBL:AY071501 RefSeq:NP_001027444.1
HSSP:O27727 SMR:Q8SYJ9 STRING:Q8SYJ9 EnsemblMetazoa:FBtr0091787
GeneID:3772640 KEGG:dme:Dmel_CG33786 UCSC:CG33786-RA
FlyBase:FBgn0061361 InParanoid:Q8SYJ9 GenomeRNAi:3772640
NextBio:854475 Uniprot:Q8SYJ9
Length = 248
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 91/209 (43%), Positives = 130/209 (62%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
EA + A Q L G+VIA+PTDT+YG ACDA + A+ ++YEIKGR P+AICV ++
Sbjct: 38 EAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAICVHNID 97
Query: 84 DINRFAVTDHLPHGLLDSLLPGPVTVVLSR-GESSNLEKSLNPGLESIGVRVPDSNFVR- 141
+ RF HL LL LLPGP+T+V+ R + SN + LNP IG+R+PD NF+R
Sbjct: 98 ALRRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSN--RFLNPSTSKIGIRIPDFNFMRD 155
Query: 142 VIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGG---VLPSGRAGSTVVDL 198
+ A E LALTSAN + PSS+ V +F +LW + V+D G + R STV+DL
Sbjct: 156 LCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGRIGLTEERRLASTVIDL 215
Query: 199 TRLGKFKILRPGSAKEETIAILEKHSLVE 227
G ++I+R G A + T++++E+ + E
Sbjct: 216 ATPGYYEIVRAGVALKPTLSLMEEFGIRE 244
>UNIPROTKB|Q2GG33 [details] [associations]
symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000236 GenomeReviews:CP000236_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_507600.1
ProteinModelPortal:Q2GG33 STRING:Q2GG33 GeneID:3926999
KEGG:ech:ECH_0802 PATRIC:20577032 OMA:EDICVIP
ProtClustDB:CLSK749649 BioCyc:ECHA205920:GJNR-805-MONOMER
Uniprot:Q2GG33
Length = 194
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 68/191 (35%), Positives = 109/191 (57%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
EA+QALK +I PT+T+Y A A S EAV +IY+IKGR + PL++ + ++ I +F
Sbjct: 4 EAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIKQF 63
Query: 89 A-VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
+ +T+H ++ L PGPVT VL + L + ++IG+R+PD I
Sbjct: 64 STLTEHT-FKIIQKLSPGPVTFVLPIHNYNKLPRQFFN--DTIGIRIPDHPIALEILSNF 120
Query: 148 ESALALTSANLTGQPS-SVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKI 206
++ + TS N++GQPS + S + E + + + + + L +G STV+DLT +KI
Sbjct: 121 DNPVVGTSVNISGQPSVTASHQVQETIKQHISVIIEDDSLVNG-IESTVIDLT---SYKI 176
Query: 207 LRPGSAKEETI 217
LR G+ E+ I
Sbjct: 177 LRTGAVSEKKI 187
>UNIPROTKB|Q81JX5 [details] [associations]
symbol:BAS5174 "Sua5/yciO/yrdC/ywlC family protein"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:ANTSTKP RefSeq:NP_847725.1 RefSeq:YP_022236.2
RefSeq:YP_031413.1 ProteinModelPortal:Q81JX5 DNASU:1085255
EnsemblBacteria:EBBACT00000012764 EnsemblBacteria:EBBACT00000015440
EnsemblBacteria:EBBACT00000024112 GeneID:1085255 GeneID:2816855
GeneID:2852074 KEGG:ban:BA_5568 KEGG:bar:GBAA_5568 KEGG:bat:BAS5174
ProtClustDB:CLSK917674 BioCyc:BANT260799:GJAJ-5249-MONOMER
BioCyc:BANT261594:GJ7F-5428-MONOMER Uniprot:Q81JX5
Length = 346
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 70/208 (33%), Positives = 115/208 (55%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
+EA + L+ + IA PT+T+YG +A + EA+ +I+E KGR +PL + +G S ++
Sbjct: 22 QEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD- 80
Query: 88 FAVTDHLP---HGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ +P L++ PGP+T++L R E + + + GL ++GVR+PD +
Sbjct: 81 -GIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137
Query: 145 RGLESALALTSANLTGQPS-SVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
+A SAN +G+PS +++ +E+L E+ A + DGG G STV+D T
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGVG-VESTVIDCTSAVP 196
Query: 204 FKILRPGS-AKEETIAILEKHSLVEEPA 230
ILRPG KE+ A++ SL +PA
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSL--DPA 221
>TIGR_CMR|BA_5568 [details] [associations]
symbol:BA_5568 "sua5/yciO/yrdC/ywlC family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:ANTSTKP RefSeq:NP_847725.1 RefSeq:YP_022236.2
RefSeq:YP_031413.1 ProteinModelPortal:Q81JX5 DNASU:1085255
EnsemblBacteria:EBBACT00000012764 EnsemblBacteria:EBBACT00000015440
EnsemblBacteria:EBBACT00000024112 GeneID:1085255 GeneID:2816855
GeneID:2852074 KEGG:ban:BA_5568 KEGG:bar:GBAA_5568 KEGG:bat:BAS5174
ProtClustDB:CLSK917674 BioCyc:BANT260799:GJAJ-5249-MONOMER
BioCyc:BANT261594:GJ7F-5428-MONOMER Uniprot:Q81JX5
Length = 346
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 70/208 (33%), Positives = 115/208 (55%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
+EA + L+ + IA PT+T+YG +A + EA+ +I+E KGR +PL + +G S ++
Sbjct: 22 QEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD- 80
Query: 88 FAVTDHLP---HGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ +P L++ PGP+T++L R E + + + GL ++GVR+PD +
Sbjct: 81 -GIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137
Query: 145 RGLESALALTSANLTGQPS-SVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
+A SAN +G+PS +++ +E+L E+ A + DGG G STV+D T
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGVG-VESTVIDCTSAVP 196
Query: 204 FKILRPGS-AKEETIAILEKHSLVEEPA 230
ILRPG KE+ A++ SL +PA
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSL--DPA 221
>TIGR_CMR|ECH_0802 [details] [associations]
symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000236 GenomeReviews:CP000236_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_507600.1
ProteinModelPortal:Q2GG33 STRING:Q2GG33 GeneID:3926999
KEGG:ech:ECH_0802 PATRIC:20577032 OMA:EDICVIP
ProtClustDB:CLSK749649 BioCyc:ECHA205920:GJNR-805-MONOMER
Uniprot:Q2GG33
Length = 194
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 68/191 (35%), Positives = 109/191 (57%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
EA+QALK +I PT+T+Y A A S EAV +IY+IKGR + PL++ + ++ I +F
Sbjct: 4 EAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIKQF 63
Query: 89 A-VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
+ +T+H ++ L PGPVT VL + L + ++IG+R+PD I
Sbjct: 64 STLTEHT-FKIIQKLSPGPVTFVLPIHNYNKLPRQFFN--DTIGIRIPDHPIALEILSNF 120
Query: 148 ESALALTSANLTGQPS-SVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKI 206
++ + TS N++GQPS + S + E + + + + + L +G STV+DLT +KI
Sbjct: 121 DNPVVGTSVNISGQPSVTASHQVQETIKQHISVIIEDDSLVNG-IESTVIDLT---SYKI 176
Query: 207 LRPGSAKEETI 217
LR G+ E+ I
Sbjct: 177 LRTGAVSEKKI 187
>UNIPROTKB|Q3Z887 [details] [associations]
symbol:DET0835 "Sua5/YciO/YrdC/YwlC family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_181562.1
ProteinModelPortal:Q3Z887 STRING:Q3Z887 GeneID:3229877
KEGG:det:DET0835 PATRIC:21608729 OMA:NETVAIR ProtClustDB:CLSK935606
BioCyc:DETH243164:GJNF-836-MONOMER Uniprot:Q3Z887
Length = 213
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 69/196 (35%), Positives = 111/196 (56%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
E+ ++A+ LK G V+ PTDT+Y A +++AV R+++IKGR +T L +GD+S
Sbjct: 11 ESQIDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDIS 70
Query: 84 DINRFA-VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRV 142
IN+ A V L L PG +T+VL + ++ LE L G E++ +R+P+ V
Sbjct: 71 QINQVAKVFPPLASKLAKEYWPGGLTLVLPKTDNIPLE--LTGGNETVAIRIPNQPAVIE 128
Query: 143 IARGLESALALTSANLTGQPSSVSVKDFEN-LWERCACVYDGGVLPSGRAGSTVVDLTRL 201
+ + + + TSANL+G SS++ + E L +R + DGG + SG ST++ +
Sbjct: 129 MLKRVGEPVTGTSANLSGCKSSLNAAEAEKQLGDRVDFILDGGQV-SGGVESTIIAVNPD 187
Query: 202 GKFKILRPGSAKEETI 217
G KI+R G+ KE I
Sbjct: 188 G-LKIIRQGAIKESDI 202
>TIGR_CMR|DET_0835 [details] [associations]
symbol:DET_0835 "Sua5/YciO/YrdC/YwlC family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_181562.1
ProteinModelPortal:Q3Z887 STRING:Q3Z887 GeneID:3229877
KEGG:det:DET0835 PATRIC:21608729 OMA:NETVAIR ProtClustDB:CLSK935606
BioCyc:DETH243164:GJNF-836-MONOMER Uniprot:Q3Z887
Length = 213
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 69/196 (35%), Positives = 111/196 (56%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
E+ ++A+ LK G V+ PTDT+Y A +++AV R+++IKGR +T L +GD+S
Sbjct: 11 ESQIDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDIS 70
Query: 84 DINRFA-VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRV 142
IN+ A V L L PG +T+VL + ++ LE L G E++ +R+P+ V
Sbjct: 71 QINQVAKVFPPLASKLAKEYWPGGLTLVLPKTDNIPLE--LTGGNETVAIRIPNQPAVIE 128
Query: 143 IARGLESALALTSANLTGQPSSVSVKDFEN-LWERCACVYDGGVLPSGRAGSTVVDLTRL 201
+ + + + TSANL+G SS++ + E L +R + DGG + SG ST++ +
Sbjct: 129 MLKRVGEPVTGTSANLSGCKSSLNAAEAEKQLGDRVDFILDGGQV-SGGVESTIIAVNPD 187
Query: 202 GKFKILRPGSAKEETI 217
G KI+R G+ KE I
Sbjct: 188 G-LKIIRQGAIKESDI 202
>UNIPROTKB|Q9KT26 [details] [associations]
symbol:VC1079 "Putative uncharacterized protein VC1079"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
GenomeReviews:AE003852_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:GQLASHY EMBL:AE004189 PIR:G82243 RefSeq:NP_230724.1
ProteinModelPortal:Q9KT26 DNASU:2614349 GeneID:2614349
KEGG:vch:VC1079 PATRIC:20081254 ProtClustDB:CLSK793940
Uniprot:Q9KT26
Length = 329
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 75/207 (36%), Positives = 110/207 (53%)
Query: 23 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV 82
T A E A Q LK G+++A+PT+T+YG A DA EAV +I+ KGR PL + +G
Sbjct: 18 TPADIECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSA 77
Query: 83 SDINRFAVTDHLPHG--LLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
++ +A TD P L ++ PGP+T++L + + + + GLES+G+RVP +
Sbjct: 78 EQLSEWA-TDIAPEAYQLAEAFWPGPLTLLLPKAKQ--VSPVVTGGLESVGIRVPAHPVL 134
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLT 199
I + A+A SAN + S S + + L R A V DGG G ST+VDLT
Sbjct: 135 LDILKTHRLAVAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQHGLE-STIVDLT 193
Query: 200 RLGKFKILRPGS-AKEETIAILEKHSL 225
F++LR G E A+L + L
Sbjct: 194 SK-PFRVLRAGPITASELSAVLGQEVL 219
>TIGR_CMR|VC_1079 [details] [associations]
symbol:VC_1079 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 GenomeReviews:AE003852_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727 OMA:GQLASHY
EMBL:AE004189 PIR:G82243 RefSeq:NP_230724.1
ProteinModelPortal:Q9KT26 DNASU:2614349 GeneID:2614349
KEGG:vch:VC1079 PATRIC:20081254 ProtClustDB:CLSK793940
Uniprot:Q9KT26
Length = 329
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 75/207 (36%), Positives = 110/207 (53%)
Query: 23 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV 82
T A E A Q LK G+++A+PT+T+YG A DA EAV +I+ KGR PL + +G
Sbjct: 18 TPADIECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSA 77
Query: 83 SDINRFAVTDHLPHG--LLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
++ +A TD P L ++ PGP+T++L + + + + GLES+G+RVP +
Sbjct: 78 EQLSEWA-TDIAPEAYQLAEAFWPGPLTLLLPKAKQ--VSPVVTGGLESVGIRVPAHPVL 134
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLT 199
I + A+A SAN + S S + + L R A V DGG G ST+VDLT
Sbjct: 135 LDILKTHRLAVAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQHGLE-STIVDLT 193
Query: 200 RLGKFKILRPGS-AKEETIAILEKHSL 225
F++LR G E A+L + L
Sbjct: 194 SK-PFRVLRAGPITASELSAVLGQEVL 219
>UNIPROTKB|Q71WN7 [details] [associations]
symbol:LMOf2365_2514 "Sua5/YciO/YrdC/YwlC family protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE017262 GenomeReviews:AE017262_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 OMA:LICHMAD RefSeq:YP_015102.1
ProteinModelPortal:Q71WN7 STRING:Q71WN7 GeneID:2799707
KEGG:lmf:LMOf2365_2514 PATRIC:20326399 ProtClustDB:CLSK564996
Uniprot:Q71WN7
Length = 345
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 64/192 (33%), Positives = 104/192 (54%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
+EA + L++G+ +A PT+T+YG DA + AV +IYE KGR +PL + + ++
Sbjct: 19 QEAAKLLRSGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDP 78
Query: 88 FAVTDHLPH-GLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
F + + L++ PGP+TV+L + S L +++ GL ++GVR+P+ +
Sbjct: 79 FVASYPVKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVSLALIDA 137
Query: 147 LESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFK 205
+A SAN +G+PS + E+L + A + DGG G STV+D + L
Sbjct: 138 ANIPVAAPSANRSGKPSPTTASHVIEDLDGKIAGIIDGGATGVGLE-STVIDCS-LDIPV 195
Query: 206 ILRPGSAKEETI 217
ILRPG +E I
Sbjct: 196 ILRPGGVTKEQI 207
>UNIPROTKB|Q2GJU2 [details] [associations]
symbol:APH_0782 "Sua5/YciO/YrdC/YwlC family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000235 GenomeReviews:CP000235_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 OMA:EDICVIP
ProtClustDB:CLSK749649 RefSeq:YP_505359.1 ProteinModelPortal:Q2GJU2
STRING:Q2GJU2 GeneID:3930676 KEGG:aph:APH_0782 PATRIC:20950250
BioCyc:APHA212042:GHPM-796-MONOMER Uniprot:Q2GJU2
Length = 200
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 58/184 (31%), Positives = 98/184 (53%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
EE + AL+ +++ PT+TLY AC+A S AV ++Y+IK R + P ++ +GD+ + +
Sbjct: 3 EEIVNALRNEEIVCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVKK 62
Query: 88 FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
F+ + +++ L PGP+T +L + NL + +++GVR+PD I
Sbjct: 63 FSNMKNTDLRIMEMLSPGPITFILPLHYAQNLPRRFFK--DTLGVRIPDHALACNILSRF 120
Query: 148 ESALALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKI 206
E + TSANL+G+ ++ D E L + +++ SG STV D+ KI
Sbjct: 121 EFPVVATSANLSGERDALKASDIPEELRMHVSKLWEDDSSVSGMC-STVFDMVSQ---KI 176
Query: 207 LRPG 210
LR G
Sbjct: 177 LRTG 180
>UNIPROTKB|Q3A930 [details] [associations]
symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 RefSeq:YP_361354.1 ProteinModelPortal:Q3A930
STRING:Q3A930 GeneID:3727660 KEGG:chy:CHY_2561 PATRIC:21278171
OMA:ANTSTKP BioCyc:CHYD246194:GJCN-2560-MONOMER Uniprot:Q3A930
Length = 342
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 65/191 (34%), Positives = 101/191 (52%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
EA + +K G+++A PT+T+YG DA + AV +I+ KGR +PL + + DI R
Sbjct: 20 EAAEYIKKGELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQDNPLIVHIARHEDIYRV 79
Query: 89 AV-TDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
A D L++ PGP+T+VL R E +L ++ GL ++ VR+PD ++
Sbjct: 80 AARVDVRAQKLMEKFWPGPLTIVLPRRE--DLPAVVSAGLPTVAVRLPDHPVAVMLIEAA 137
Query: 148 ESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKI 206
++ +A SAN +G+PS S + ++L V GG G STV+DLT +
Sbjct: 138 QTPIAAPSANRSGRPSPTSYEHVLDDLSGIIPVVLAGGNCRVG-VESTVLDLTVTPPV-V 195
Query: 207 LRPGSAKEETI 217
LRPG E +
Sbjct: 196 LRPGGITPEML 206
>TIGR_CMR|APH_0782 [details] [associations]
symbol:APH_0782 "Sua5/YciO/YrdC/YwlC family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000235 GenomeReviews:CP000235_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 OMA:EDICVIP
ProtClustDB:CLSK749649 RefSeq:YP_505359.1 ProteinModelPortal:Q2GJU2
STRING:Q2GJU2 GeneID:3930676 KEGG:aph:APH_0782 PATRIC:20950250
BioCyc:APHA212042:GHPM-796-MONOMER Uniprot:Q2GJU2
Length = 200
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 58/184 (31%), Positives = 98/184 (53%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
EE + AL+ +++ PT+TLY AC+A S AV ++Y+IK R + P ++ +GD+ + +
Sbjct: 3 EEIVNALRNEEIVCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVKK 62
Query: 88 FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
F+ + +++ L PGP+T +L + NL + +++GVR+PD I
Sbjct: 63 FSNMKNTDLRIMEMLSPGPITFILPLHYAQNLPRRFFK--DTLGVRIPDHALACNILSRF 120
Query: 148 ESALALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKI 206
E + TSANL+G+ ++ D E L + +++ SG STV D+ KI
Sbjct: 121 EFPVVATSANLSGERDALKASDIPEELRMHVSKLWEDDSSVSGMC-STVFDMVSQ---KI 176
Query: 207 LRPG 210
LR G
Sbjct: 177 LRTG 180
>TIGR_CMR|CHY_2561 [details] [associations]
symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 RefSeq:YP_361354.1 ProteinModelPortal:Q3A930
STRING:Q3A930 GeneID:3727660 KEGG:chy:CHY_2561 PATRIC:21278171
OMA:ANTSTKP BioCyc:CHYD246194:GJCN-2560-MONOMER Uniprot:Q3A930
Length = 342
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 65/191 (34%), Positives = 101/191 (52%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
EA + +K G+++A PT+T+YG DA + AV +I+ KGR +PL + + DI R
Sbjct: 20 EAAEYIKKGELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQDNPLIVHIARHEDIYRV 79
Query: 89 AV-TDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
A D L++ PGP+T+VL R E +L ++ GL ++ VR+PD ++
Sbjct: 80 AARVDVRAQKLMEKFWPGPLTIVLPRRE--DLPAVVSAGLPTVAVRLPDHPVAVMLIEAA 137
Query: 148 ESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKI 206
++ +A SAN +G+PS S + ++L V GG G STV+DLT +
Sbjct: 138 QTPIAAPSANRSGRPSPTSYEHVLDDLSGIIPVVLAGGNCRVG-VESTVLDLTVTPPV-V 195
Query: 207 LRPGSAKEETI 217
LRPG E +
Sbjct: 196 LRPGGITPEML 206
>UNIPROTKB|Q2GDI6 [details] [associations]
symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_506460.1
ProteinModelPortal:Q2GDI6 STRING:Q2GDI6 GeneID:3931732
KEGG:nse:NSE_0579 PATRIC:22681197 OMA:YDIKQRN
ProtClustDB:CLSK2527989 BioCyc:NSEN222891:GHFU-596-MONOMER
Uniprot:Q2GDI6
Length = 195
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 65/195 (33%), Positives = 101/195 (51%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
E + L+ G V+ PT+T+Y ACDA + A+ RIY+IK R L I V +SD+ F
Sbjct: 4 ETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSF 63
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 148
A + L+ PGPVT +L R +S++L P E + VRVPDS I RG +
Sbjct: 64 ASFNESQARLIQECCPGPVTFILKRKKSAHLRFRF-P--EKVAVRVPDSKVALKILRGFK 120
Query: 149 SALALTSANLTGQPSSVSVKDFEN-LWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKIL 207
+ TS NL+G+P+ + + + +R + + G A S+++D++ GK +L
Sbjct: 121 RPVFATSVNLSGRPAVSNFTQIGSYIKKRVSRIICDNREVKGTA-SSIIDIS--GKRAVL 177
Query: 208 -RPGSAKEETIAILE 221
R G+ + LE
Sbjct: 178 VRKGAFSTSFVENLE 192
>TIGR_CMR|NSE_0579 [details] [associations]
symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_506460.1
ProteinModelPortal:Q2GDI6 STRING:Q2GDI6 GeneID:3931732
KEGG:nse:NSE_0579 PATRIC:22681197 OMA:YDIKQRN
ProtClustDB:CLSK2527989 BioCyc:NSEN222891:GHFU-596-MONOMER
Uniprot:Q2GDI6
Length = 195
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 65/195 (33%), Positives = 101/195 (51%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
E + L+ G V+ PT+T+Y ACDA + A+ RIY+IK R L I V +SD+ F
Sbjct: 4 ETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSF 63
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 148
A + L+ PGPVT +L R +S++L P E + VRVPDS I RG +
Sbjct: 64 ASFNESQARLIQECCPGPVTFILKRKKSAHLRFRF-P--EKVAVRVPDSKVALKILRGFK 120
Query: 149 SALALTSANLTGQPSSVSVKDFEN-LWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKIL 207
+ TS NL+G+P+ + + + +R + + G A S+++D++ GK +L
Sbjct: 121 RPVFATSVNLSGRPAVSNFTQIGSYIKKRVSRIICDNREVKGTA-SSIIDIS--GKRAVL 177
Query: 208 -RPGSAKEETIAILE 221
R G+ + LE
Sbjct: 178 VRKGAFSTSFVENLE 192
>UNIPROTKB|Q74CS6 [details] [associations]
symbol:yrdC "tRNA (N6-threonylcarbamyl-A37) modification
ATPase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:NP_952647.1
ProteinModelPortal:Q74CS6 GeneID:2687124 KEGG:gsu:GSU1596
PATRIC:22026037 ProtClustDB:CLSK924523
BioCyc:GSUL243231:GH27-1540-MONOMER Uniprot:Q74CS6
Length = 203
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 57/181 (31%), Positives = 95/181 (52%)
Query: 32 QALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVT 91
+ L G VIA PTDT YG C S + + RIY +K R+ P + ++S++ R+A
Sbjct: 20 EVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKV 79
Query: 92 DHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESAL 151
+ + +L LPGP T V+ +S + L +++G+R+PD+ + + L +
Sbjct: 80 SNYAYKILKRYLPGPYTFVIDA--TSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPI 137
Query: 152 ALTSANLTGQ-PSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKF-KILRP 209
TSANL+G+ P ++ L ++ V DGG L + S+VV L +G + ++LR
Sbjct: 138 VTTSANLSGEEPIGDPLEVERTLGKQLDLVVDGGNLTADV--SSVVSL--IGDYPQVLRR 193
Query: 210 G 210
G
Sbjct: 194 G 194
>TIGR_CMR|GSU_1596 [details] [associations]
symbol:GSU_1596 "Sua5/YciO/YrdC/YwlC family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:NP_952647.1
ProteinModelPortal:Q74CS6 GeneID:2687124 KEGG:gsu:GSU1596
PATRIC:22026037 ProtClustDB:CLSK924523
BioCyc:GSUL243231:GH27-1540-MONOMER Uniprot:Q74CS6
Length = 203
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 57/181 (31%), Positives = 95/181 (52%)
Query: 32 QALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVT 91
+ L G VIA PTDT YG C S + + RIY +K R+ P + ++S++ R+A
Sbjct: 20 EVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKV 79
Query: 92 DHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESAL 151
+ + +L LPGP T V+ +S + L +++G+R+PD+ + + L +
Sbjct: 80 SNYAYKILKRYLPGPYTFVIDA--TSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPI 137
Query: 152 ALTSANLTGQ-PSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKF-KILRP 209
TSANL+G+ P ++ L ++ V DGG L + S+VV L +G + ++LR
Sbjct: 138 VTTSANLSGEEPIGDPLEVERTLGKQLDLVVDGGNLTADV--SSVVSL--IGDYPQVLRR 193
Query: 210 G 210
G
Sbjct: 194 G 194
>UNIPROTKB|Q5LX83 [details] [associations]
symbol:SPO0297 "Sua5/YciO/YrdC family protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HOGENOM:HOG000076160 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 RefSeq:YP_165560.1
ProteinModelPortal:Q5LX83 GeneID:3193859 KEGG:sil:SPO0297
PATRIC:23373847 OMA:LICHMAD ProtClustDB:CLSK835631 Uniprot:Q5LX83
Length = 316
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 62/192 (32%), Positives = 91/192 (47%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A + L+ G+++A PT+T+YG DA + +AV IY KGR +PL V R
Sbjct: 19 AAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASAEAARRHV 78
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
L + PGP+T+VL + + + + GL+++ VRVP R + L+
Sbjct: 79 HWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTARTLLATLDR 138
Query: 150 ALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILR 208
+A SAN +G+ S + L R A V D G G ST+V L+ G +LR
Sbjct: 139 PVAAPSANPSGRISPTTADHVLAGLDGRIAAVLDAGPCGVG-VESTIVGLS--GTPILLR 195
Query: 209 PGSAKEETIAIL 220
PG E I L
Sbjct: 196 PGGLPTEEIEAL 207
>TIGR_CMR|SPO_0297 [details] [associations]
symbol:SPO_0297 "Sua5/YciO/YrdC family protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HOGENOM:HOG000076160 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 RefSeq:YP_165560.1
ProteinModelPortal:Q5LX83 GeneID:3193859 KEGG:sil:SPO0297
PATRIC:23373847 OMA:LICHMAD ProtClustDB:CLSK835631 Uniprot:Q5LX83
Length = 316
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 62/192 (32%), Positives = 91/192 (47%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A + L+ G+++A PT+T+YG DA + +AV IY KGR +PL V R
Sbjct: 19 AAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASAEAARRHV 78
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
L + PGP+T+VL + + + + GL+++ VRVP R + L+
Sbjct: 79 HWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTARTLLATLDR 138
Query: 150 ALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILR 208
+A SAN +G+ S + L R A V D G G ST+V L+ G +LR
Sbjct: 139 PVAAPSANPSGRISPTTADHVLAGLDGRIAAVLDAGPCGVG-VESTIVGLS--GTPILLR 195
Query: 209 PGSAKEETIAIL 220
PG E I L
Sbjct: 196 PGGLPTEEIEAL 207
>UNIPROTKB|Q10618 [details] [associations]
symbol:MT1340 "Uncharacterized protein Rv1301/MT1340"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 PIR:A70774 RefSeq:NP_215817.1 RefSeq:NP_335788.1
RefSeq:YP_006514678.1 ProteinModelPortal:Q10618 SMR:Q10618
PRIDE:Q10618 EnsemblBacteria:EBMYCT00000003315
EnsemblBacteria:EBMYCT00000069301 GeneID:13319883 GeneID:886970
GeneID:924728 KEGG:mtc:MT1340 KEGG:mtu:Rv1301 KEGG:mtv:RVBD_1301
PATRIC:18124714 TubercuList:Rv1301 HOGENOM:HOG000076161 OMA:LAFSKQQ
ProtClustDB:CLSK791088 Uniprot:Q10618
Length = 217
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 62/194 (31%), Positives = 100/194 (51%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ A+K G+++ +PTDT+YG DA S AV + KGR P+ + VG I
Sbjct: 20 AVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLV 79
Query: 90 VTDHLPHG---LLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
+ +P G L+ + PG +++V+ + S L+ L ++ +R+P + R
Sbjct: 80 YS--MPDGARELIRAFWPGALSLVVVQAPS--LQWDLGDAHGTVMLRMPLHPVAIELLRE 135
Query: 147 LESALALTSANLTGQPSSVSVKDFEN-LWERCACVYDGGVLPSGR-AGSTVVDLTRLGKF 204
+ +A++SAN++G P V + + L + A D G PS + AGST+VDLT
Sbjct: 136 V-GPMAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAG--PSEQQAGSTIVDLTGATP- 191
Query: 205 KILRPGSAKEETIA 218
++LRPG E IA
Sbjct: 192 RVLRPGPVSTERIA 205
>ASPGD|ASPL0000000720 [details] [associations]
symbol:AN10771 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:BN001301 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 OMA:PLIVHID
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 EnsemblFungi:CADANIAT00006938 Uniprot:C8V2S3
Length = 427
Score = 218 (81.8 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 70/216 (32%), Positives = 100/216 (46%)
Query: 20 RPATEAHA-EEAIQALKTGKV-IAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAI 77
R EA A EA L+T V +A PT+T+YG DA S+AV IY+ K R +PL +
Sbjct: 36 RNTPEAVAIAEAANLLRTSDVPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIV 95
Query: 78 CVGDVSDINRF------------AVTDHLP---HGLLDSLLPGPVTVVLSRGESSNLEKS 122
+ + +NR V +P L++ PGP+T++L S L
Sbjct: 96 HIDSLQMLNRLLNPASDTSCPTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPE 155
Query: 123 LNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKD-FENLWERCACVY 181
+ L + GVR+P S R++ + LA SAN + +PS + + F +L R +
Sbjct: 156 VTSNLTTFGVRMPLSPLARLLIHVADRPLAAPSANASTKPSPTAAEHVFHDLQGRIELIL 215
Query: 182 DGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETI 217
DGG G STVVD ILRPG E +
Sbjct: 216 DGGPCGVG-VESTVVDGLS-NPPSILRPGGVSIEEL 249
>UNIPROTKB|Q0C144 [details] [associations]
symbol:HNE_1848 "Sua5/YciO/YrdC/YwlC family protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000158 GenomeReviews:CP000158_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930
RefSeq:YP_760549.1 ProteinModelPortal:Q0C144 STRING:Q0C144
GeneID:4287782 KEGG:hne:HNE_1848 PATRIC:32216527 OMA:GQLASHY
ProtClustDB:CLSK777606 BioCyc:HNEP228405:GI69-1874-MONOMER
Uniprot:Q0C144
Length = 313
Score = 205 (77.2 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 60/205 (29%), Positives = 98/205 (47%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A++ L G ++A+PT+T+YG A DA + +AV R+Y+ KGR +PL V +R A
Sbjct: 16 AVEILSGGGLVAMPTETVYGLAADAANPDAVVRLYQAKGRPRFNPLIAHVSGTEMASREA 75
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
V L L + PGP+T+VL + + GL+++G+R P +
Sbjct: 76 VFSPLAERLAEKFWPGPLTLVLPVNPNGTVCDLARSGLQTVGLRCPSHPAANALITEFGR 135
Query: 150 ALALTSANLTGQPSSVSVKDFE-NLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFK-IL 207
+ SAN +G S + +L +R + DGG G ST++ + G+ +L
Sbjct: 136 PVVAPSANRSGHVSPTRAEHVAADLSDRIDLILDGGPCDVG-IESTILAVE--GETATLL 192
Query: 208 RPGSAKEETIAILEKHSLVEEPAAG 232
R G+ + + SL E A+G
Sbjct: 193 RSGAIPSDVLETFIGKSL--ERASG 215
>CGD|CAL0002177 [details] [associations]
symbol:orf19.7088 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006450 "regulation of translational fidelity" evidence=IEA]
[GO:0070525 "threonylcarbamoyladenosine metabolic process"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 CGD:CAL0002177
EMBL:AACQ01000024 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 RefSeq:XP_720379.1 RefSeq:XP_888667.1
ProteinModelPortal:Q5AFI0 STRING:Q5AFI0 GeneID:3638042
GeneID:3703980 KEGG:cal:CaO19.7088 KEGG:cal:CaO19_7088
Uniprot:Q5AFI0
Length = 382
Score = 207 (77.9 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 60/211 (28%), Positives = 100/211 (47%)
Query: 12 VENKAGLVRPATEAHAEEAIQALKTG-KVIAVPTDTLYGFACDACSSEAVNRIYEIKGRK 70
V +K + T + E A + L T I PT+T+YG A A S E+V IY+ K R
Sbjct: 27 VNDKPQISDNETLINLEIAAKELTTTHNAIGFPTETVYGLAGSALSDESVKSIYKAKNRP 86
Query: 71 HTSPLAICVGDVSDINRFAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGL 127
+PL + + + + R + +P LD + PGP+T++L + S + K +
Sbjct: 87 ADNPLIVHISSIEQLKRKLINYEIPQVYLDLISHFWPGPLTILLPITKDSPISKLVTANQ 146
Query: 128 ESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVL 186
++ VR+P+ R + ++ +A SAN + +PS + + +L + + DGG
Sbjct: 147 DTFAVRMPNHPVARALIAMSDTPIAAPSANASTRPSPTLAEHVYHDLNGKIPLILDGGAC 206
Query: 187 PSGRAGSTVVDLTRLGKFKILRPGSAKEETI 217
G STV+D + +LRPG E I
Sbjct: 207 NVG-VESTVID-GLVDPPMLLRPGGVSLEDI 235
>SGD|S000003137 [details] [associations]
symbol:SUA5 "Single-stranded telomeric DNA-binding protein"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006450 "regulation of translational
fidelity" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IMP] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IDA] [GO:0070525
"threonylcarbamoyladenosine metabolic process" evidence=IMP]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 SGD:S000003137 GO:GO:0005634
GO:GO:0005737 EMBL:BK006941 GO:GO:0008033 EMBL:X85757 EMBL:X64319
GO:GO:0000781 GO:GO:0000723 GO:GO:0070525 GO:GO:0043047
GO:GO:0006450 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
OrthoDB:EOG4C8C27 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 EMBL:Z72691 PIR:S41991
RefSeq:NP_011346.1 ProteinModelPortal:P32579 SMR:P32579
DIP:DIP-2794N IntAct:P32579 MINT:MINT-497166 STRING:P32579
PaxDb:P32579 PeptideAtlas:P32579 EnsemblFungi:YGL169W GeneID:852707
KEGG:sce:YGL169W CYGD:YGL169w GeneTree:ENSGT00390000015364
OMA:LLITKET NextBio:972064 Genevestigator:P32579 GermOnline:YGL169W
Uniprot:P32579
Length = 426
Score = 202 (76.2 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 66/217 (30%), Positives = 104/217 (47%)
Query: 21 PATEAHAEEAIQALK-TGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICV 79
P TEA EA + ++ T + +A PT+T+YG A + +V IY K R +PL V
Sbjct: 46 PETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPLITHV 105
Query: 80 GDVSDINR--F--------AVTDHLP---HGLLDSLLPGPVTVVLS--RGESSNLEKSLN 124
+ +NR F ++ D++P L+ SL PGP+T++L E S L K
Sbjct: 106 SSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALSKLTT 165
Query: 125 PGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPS-SVSVKDFENLWERCACVYDG 183
+ VR+P + R + ++ +A SAN + +PS +++ + +L ++ + DG
Sbjct: 166 ADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVYHDLKDKIPIILDG 225
Query: 184 GVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETIAIL 220
G G STVVD +LRPG E I L
Sbjct: 226 GACKVG-VESTVVD-GLCNPPTLLRPGGFTYEEIVKL 260
>UNIPROTKB|Q8ECV7 [details] [associations]
symbol:yciO "RNA binding protein YciO" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847
HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_718584.1
ProteinModelPortal:Q8ECV7 SMR:Q8ECV7 GeneID:1170704
KEGG:son:SO_3016 PATRIC:23525668 ProtClustDB:CLSK906958
Uniprot:Q8ECV7
Length = 206
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 54/186 (29%), Positives = 94/186 (50%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A+ LK+G VI PTD+ Y C +A+ RI I+ +H ++ D+S++ +
Sbjct: 19 QAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELATY 78
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSL-NPGLESIGVRVPDSNFVRVIARGL 147
A D+ + +L S PGP T + S + + L N ++IG+RVPD+ + L
Sbjct: 79 AKVDNQAYRILKSCTPGPYTFIFKA--SKEVPRRLQNDKKKTIGIRVPDNVIALALLEAL 136
Query: 148 ESALALTSANLTGQPSSVS-VKDFENLWE-RCACVYDGGVLPSGRAGSTVVDLTRLGKFK 205
++ L TS + + S + +L E + + GG L G +TV+D++ G F+
Sbjct: 137 DAPLMSTSLVMPDAEFAESDPEQIRDLLEHQVDVIIHGGYL--GEKPTTVIDMSEDG-FE 193
Query: 206 ILRPGS 211
+LR G+
Sbjct: 194 VLREGA 199
>TIGR_CMR|SO_3016 [details] [associations]
symbol:SO_3016 "Sua5/YciO/YrdC/YwlC family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_718584.1
ProteinModelPortal:Q8ECV7 SMR:Q8ECV7 GeneID:1170704
KEGG:son:SO_3016 PATRIC:23525668 ProtClustDB:CLSK906958
Uniprot:Q8ECV7
Length = 206
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 54/186 (29%), Positives = 94/186 (50%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A+ LK+G VI PTD+ Y C +A+ RI I+ +H ++ D+S++ +
Sbjct: 19 QAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELATY 78
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSL-NPGLESIGVRVPDSNFVRVIARGL 147
A D+ + +L S PGP T + S + + L N ++IG+RVPD+ + L
Sbjct: 79 AKVDNQAYRILKSCTPGPYTFIFKA--SKEVPRRLQNDKKKTIGIRVPDNVIALALLEAL 136
Query: 148 ESALALTSANLTGQPSSVS-VKDFENLWE-RCACVYDGGVLPSGRAGSTVVDLTRLGKFK 205
++ L TS + + S + +L E + + GG L G +TV+D++ G F+
Sbjct: 137 DAPLMSTSLVMPDAEFAESDPEQIRDLLEHQVDVIIHGGYL--GEKPTTVIDMSEDG-FE 193
Query: 206 ILRPGS 211
+LR G+
Sbjct: 194 VLREGA 199
>UNIPROTKB|Q47YC6 [details] [associations]
symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 RefSeq:YP_270194.1 ProteinModelPortal:Q47YC6
SMR:Q47YC6 STRING:Q47YC6 GeneID:3519220 KEGG:cps:CPS_3520
PATRIC:21469977 HOGENOM:HOG000076162 OMA:GWCGTEP
BioCyc:CPSY167879:GI48-3548-MONOMER Uniprot:Q47YC6
Length = 206
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 54/187 (28%), Positives = 91/187 (48%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKG--RKHTSPLAICVGDVSDI 85
++A +K G VI PTD+ Y C +A+ RI I+ + H L +C D+S I
Sbjct: 18 KQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKDHNFTL-VCQ-DLSQI 75
Query: 86 NRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
+ + D+ + LL S PG T + +G ++ LNP ++IG+RVPD+ + +
Sbjct: 76 SEYTRVDNTAYRLLKSNTPGAYTFIF-KGSKEVPKRLLNPKKKTIGIRVPDNTIAQALLT 134
Query: 146 GLESALALTSANLTGQP-SSVSVKDFENLWE-RCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L + TS + GQ + + +L E + + +GG L G +TV+D +
Sbjct: 135 ELAEPIMSTSLIMPGQEMAEYDPEQIRDLLEHQVDLIVNGGYL--GEHPTTVIDFSN-DS 191
Query: 204 FKILRPG 210
+I+R G
Sbjct: 192 IEIIRVG 198
>TIGR_CMR|CPS_3520 [details] [associations]
symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 RefSeq:YP_270194.1 ProteinModelPortal:Q47YC6
SMR:Q47YC6 STRING:Q47YC6 GeneID:3519220 KEGG:cps:CPS_3520
PATRIC:21469977 HOGENOM:HOG000076162 OMA:GWCGTEP
BioCyc:CPSY167879:GI48-3548-MONOMER Uniprot:Q47YC6
Length = 206
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 54/187 (28%), Positives = 91/187 (48%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKG--RKHTSPLAICVGDVSDI 85
++A +K G VI PTD+ Y C +A+ RI I+ + H L +C D+S I
Sbjct: 18 KQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKDHNFTL-VCQ-DLSQI 75
Query: 86 NRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
+ + D+ + LL S PG T + +G ++ LNP ++IG+RVPD+ + +
Sbjct: 76 SEYTRVDNTAYRLLKSNTPGAYTFIF-KGSKEVPKRLLNPKKKTIGIRVPDNTIAQALLT 134
Query: 146 GLESALALTSANLTGQP-SSVSVKDFENLWE-RCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L + TS + GQ + + +L E + + +GG L G +TV+D +
Sbjct: 135 ELAEPIMSTSLIMPGQEMAEYDPEQIRDLLEHQVDLIVNGGYL--GEHPTTVIDFSN-DS 191
Query: 204 FKILRPG 210
+I+R G
Sbjct: 192 IEIIRVG 198
>UNIPROTKB|Q605R9 [details] [associations]
symbol:MCA2209 "Sua5/YciO/YrdC/YwlC family protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017282 GenomeReviews:AE017282_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:YP_114629.1
ProteinModelPortal:Q605R9 SMR:Q605R9 GeneID:3102131
KEGG:mca:MCA2209 PATRIC:22608270 Uniprot:Q605R9
Length = 207
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 56/188 (29%), Positives = 100/188 (53%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIK--GRKHTSPLAICVGDVSDIN 86
+A + ++ G VI PTD+ Y F C +A++RI I+ +H L IC D+S ++
Sbjct: 19 QAAEIVRQGGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTL-IC-HDLSQVS 76
Query: 87 RFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSL-NPGLESIGVRVPDSNFVRVIAR 145
FA ++ L+ +L PGP T +L + + + L +P ++IG+R+PD+ +++
Sbjct: 77 AFARINNEAFRLIKTLTPGPYTFLLEA--TREVPRRLQHPKRKTIGIRLPDNAVSQMLVA 134
Query: 146 GLESALALTSANLTGQPSSVS-VKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L L ++ L G+ ++ +D E + R + GV+P A +T+VDLT G+
Sbjct: 135 ELGEPLFSSTLILPGETEGLADPEDIRERVGTRVELILAAGVIPF--AETTIVDLT--GE 190
Query: 204 FKIL-RPG 210
F ++ R G
Sbjct: 191 FPVIVRQG 198
>UNIPROTKB|Q8EKQ3 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:211586 "Shewanella oneidensis MR-1"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
TIGRFAMs:TIGR00057 HSSP:P45748 RefSeq:NP_715679.1
ProteinModelPortal:Q8EKQ3 SMR:Q8EKQ3 GeneID:1167935
KEGG:son:SO_0037 PATRIC:23519765 ProtClustDB:CLSK905558
Uniprot:Q8EKQ3
Length = 188
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 56/190 (29%), Positives = 86/190 (45%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + + S
Sbjct: 3 QLHPSDIKDVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ ++ + L +SI VRV V
Sbjct: 63 QLLAYVDESQLTDEQLELAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
R + + L L TSANL G+ ++S + N++E G L R ST++D R
Sbjct: 121 RALCQALGKPLVSTSANLAGEDPALSGDEILNVFEGKIDALVLGQLGEQRQPSTIID-AR 179
Query: 201 LGKFKILRPG 210
GK ILR G
Sbjct: 180 SGK--ILRNG 187
>TIGR_CMR|SO_0037 [details] [associations]
symbol:SO_0037 "Sua5/YciO/YrdC/YwlC family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
TIGRFAMs:TIGR00057 HSSP:P45748 RefSeq:NP_715679.1
ProteinModelPortal:Q8EKQ3 SMR:Q8EKQ3 GeneID:1167935
KEGG:son:SO_0037 PATRIC:23519765 ProtClustDB:CLSK905558
Uniprot:Q8EKQ3
Length = 188
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 56/190 (29%), Positives = 86/190 (45%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + + S
Sbjct: 3 QLHPSDIKDVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ ++ + L +SI VRV V
Sbjct: 63 QLLAYVDESQLTDEQLELAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
R + + L L TSANL G+ ++S + N++E G L R ST++D R
Sbjct: 121 RALCQALGKPLVSTSANLAGEDPALSGDEILNVFEGKIDALVLGQLGEQRQPSTIID-AR 179
Query: 201 LGKFKILRPG 210
GK ILR G
Sbjct: 180 SGK--ILRNG 187
>UNIPROTKB|Q83D35 [details] [associations]
symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_819924.1
ProteinModelPortal:Q83D35 SMR:Q83D35 GeneID:1208802
KEGG:cbu:CBU_0909 PATRIC:17930519 ProtClustDB:CLSK914406
BioCyc:CBUR227377:GJ7S-900-MONOMER Uniprot:Q83D35
Length = 204
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 53/187 (28%), Positives = 91/187 (48%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++A++ +KTG ++A TD+ Y C + RI ++ P + D+S+I
Sbjct: 17 KQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIAV 76
Query: 88 FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSL-NPGLESIGVRVPDSNFVRVIARG 146
+A + L + PGP T +LS + + + L +P ++IG+RVPD ++ I
Sbjct: 77 YARIANPVFRFLKAHTPGPYTFILSATRA--VPRQLQHPKRKTIGIRVPDHRVIQAILEQ 134
Query: 147 LESALALTSANLTGQ---PSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L+ L + G+ PS +S ++ E L + + D GV G +TV+DL G+
Sbjct: 135 LQEPLMNVTLIFPGEQWAPSEISEREDE-LAAQVDLIVDSGVC--GVEPTTVIDLVD-GE 190
Query: 204 FKILRPG 210
ILR G
Sbjct: 191 PTILREG 197
>TIGR_CMR|CBU_0909 [details] [associations]
symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_819924.1
ProteinModelPortal:Q83D35 SMR:Q83D35 GeneID:1208802
KEGG:cbu:CBU_0909 PATRIC:17930519 ProtClustDB:CLSK914406
BioCyc:CBUR227377:GJ7S-900-MONOMER Uniprot:Q83D35
Length = 204
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 53/187 (28%), Positives = 91/187 (48%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++A++ +KTG ++A TD+ Y C + RI ++ P + D+S+I
Sbjct: 17 KQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIAV 76
Query: 88 FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSL-NPGLESIGVRVPDSNFVRVIARG 146
+A + L + PGP T +LS + + + L +P ++IG+RVPD ++ I
Sbjct: 77 YARIANPVFRFLKAHTPGPYTFILSATRA--VPRQLQHPKRKTIGIRVPDHRVIQAILEQ 134
Query: 147 LESALALTSANLTGQ---PSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L+ L + G+ PS +S ++ E L + + D GV G +TV+DL G+
Sbjct: 135 LQEPLMNVTLIFPGEQWAPSEISEREDE-LAAQVDLIVDSGVC--GVEPTTVIDLVD-GE 190
Query: 204 FKILRPG 210
ILR G
Sbjct: 191 PTILREG 197
>UNIPROTKB|Q9KVT5 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 EMBL:AF459402
eggNOG:COG0009 KO:K07566 OMA:FGLGCNP TIGRFAMs:TIGR00057 HSSP:P45748
PIR:E82370 RefSeq:NP_229713.1 ProteinModelPortal:Q9KVT5
DNASU:2614432 GeneID:2614432 KEGG:vch:VC0054 PATRIC:20079154
ProtClustDB:CLSK793439 Uniprot:Q9KVT5
Length = 188
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/187 (27%), Positives = 88/187 (47%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++A+ AL+ G VIA PT+ ++G CD + A+ R+ IK R + + + +
Sbjct: 8 QQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRP 67
Query: 88 FAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ L L +L P P+T V+ S + + +++ VRV D V+ +
Sbjct: 68 YVDETQLTAEQLTQVLASWPAPLTWVMPA--SGDTPSWVRGQFDTVAVRVSDHPVVQKLC 125
Query: 145 RGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L TSANL+GQP+ V+ ++ L + A V +G SGR G + + R
Sbjct: 126 LAFGKPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEGKT--SGRHGPSEIRDAR--S 181
Query: 204 FKILRPG 210
++LR G
Sbjct: 182 LQVLRQG 188
>TIGR_CMR|VC_0054 [details] [associations]
symbol:VC_0054 "Sua5/YciO/YrdC family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 EMBL:AF459402
eggNOG:COG0009 KO:K07566 OMA:FGLGCNP TIGRFAMs:TIGR00057 HSSP:P45748
PIR:E82370 RefSeq:NP_229713.1 ProteinModelPortal:Q9KVT5
DNASU:2614432 GeneID:2614432 KEGG:vch:VC0054 PATRIC:20079154
ProtClustDB:CLSK793439 Uniprot:Q9KVT5
Length = 188
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/187 (27%), Positives = 88/187 (47%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++A+ AL+ G VIA PT+ ++G CD + A+ R+ IK R + + + +
Sbjct: 8 QQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRP 67
Query: 88 FAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ L L +L P P+T V+ S + + +++ VRV D V+ +
Sbjct: 68 YVDETQLTAEQLTQVLASWPAPLTWVMPA--SGDTPSWVRGQFDTVAVRVSDHPVVQKLC 125
Query: 145 RGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L TSANL+GQP+ V+ ++ L + A V +G SGR G + + R
Sbjct: 126 LAFGKPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEGKT--SGRHGPSEIRDAR--S 181
Query: 204 FKILRPG 210
++LR G
Sbjct: 182 LQVLRQG 188
>UNIPROTKB|Q885M0 [details] [associations]
symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC family protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847
HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_791636.1
ProteinModelPortal:Q885M0 SMR:Q885M0 GeneID:1183452
KEGG:pst:PSPTO_1811 PATRIC:19994886 ProtClustDB:CLSK867809
BioCyc:PSYR223283:GJIX-1846-MONOMER Uniprot:Q885M0
Length = 209
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIK--GRKHTSPLAICVGDVSDI 85
++A + +K G ++ PTD+ Y C A+ RI ++ KH L C D+S +
Sbjct: 18 KQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCC--DLSQL 75
Query: 86 NRFAVTDHLPHGLLDSLLPGPVTVVLSRG-ESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
FA D L + PGP T +L+ E L L+P +IG+RVP + +
Sbjct: 76 GLFAKVDTGAFRALKAHTPGPYTFILNATREVPRL--ILHPKRRTIGLRVPSHPIAQALL 133
Query: 145 RGLESALALTSANLTGQ--PSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLG 202
L L S + G P S + + L + DGG+ G + STV++L+ G
Sbjct: 134 EQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHHVDLIIDGGI--GGISASTVINLSE-G 190
Query: 203 KFKILRPG 210
+ +I+R G
Sbjct: 191 EPQIVRVG 198
>UNIPROTKB|Q9KSS8 [details] [associations]
symbol:VC_1178 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 PIR:E82233 RefSeq:NP_230823.1 ProteinModelPortal:Q9KSS8
SMR:Q9KSS8 DNASU:2614611 GeneID:2614611 KEGG:vch:VC1178
PATRIC:20081446 OMA:RYFDVHP ProtClustDB:CLSK874245 Uniprot:Q9KSS8
Length = 206
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIK--GRKHTSPLAICVGDVSDIN 86
+A+ ++ G V+ PTD+ Y C + + RI +I+ KH L +C D+S+++
Sbjct: 19 QAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTL-LC-RDLSELS 76
Query: 87 RFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
+A D+ LL + PGP T + +G + +N ++IG+RVP++ +
Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIF-KGTKEVPRRLMNEKRKTIGIRVPNNKIALDLLEA 135
Query: 147 LESALALTSANLTGQPSSVSVKDFENLWERCACVYD----GGVLPSGRAGSTVVDLT 199
L L TS L G + S D E + +R D GG L G+ +TV+D +
Sbjct: 136 LGEPLMSTSLILPGNDFTES--DPEEIRDRLEHAVDVILNGGYL--GQQPTTVIDFS 188
>TIGR_CMR|VC_1178 [details] [associations]
symbol:VC_1178 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847 PIR:E82233
RefSeq:NP_230823.1 ProteinModelPortal:Q9KSS8 SMR:Q9KSS8
DNASU:2614611 GeneID:2614611 KEGG:vch:VC1178 PATRIC:20081446
OMA:RYFDVHP ProtClustDB:CLSK874245 Uniprot:Q9KSS8
Length = 206
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIK--GRKHTSPLAICVGDVSDIN 86
+A+ ++ G V+ PTD+ Y C + + RI +I+ KH L +C D+S+++
Sbjct: 19 QAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTL-LC-RDLSELS 76
Query: 87 RFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
+A D+ LL + PGP T + +G + +N ++IG+RVP++ +
Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIF-KGTKEVPRRLMNEKRKTIGIRVPNNKIALDLLEA 135
Query: 147 LESALALTSANLTGQPSSVSVKDFENLWERCACVYD----GGVLPSGRAGSTVVDLT 199
L L TS L G + S D E + +R D GG L G+ +TV+D +
Sbjct: 136 LGEPLMSTSLILPGNDFTES--DPEEIRDRLEHAVDVILNGGYL--GQQPTTVIDFS 188
>UNIPROTKB|Q603G8 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:243233 "Methylococcus capsulatus str. Bath"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 GO:GO:0008033 GO:GO:0000049 EMBL:AE017282
GenomeReviews:AE017282_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566
HSSP:P45748 RefSeq:YP_115232.1 ProteinModelPortal:Q603G8
GeneID:3104487 KEGG:mca:MCA2838 PATRIC:22609550 OMA:LYPTDTI
Uniprot:Q603G8
Length = 186
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 41/149 (27%), Positives = 69/149 (46%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A AL+ G+++A PT+ +YG CD + +AV ++ +K R L + DV +
Sbjct: 12 AANALRNGRIVAYPTEAVYGLGCDPFNEDAVRKLLALKRRSQIKGLILIAADVEAVESLV 71
Query: 90 VTDHLPHGL-LDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 148
+P G + + PGP T ++ + L +S+ VRV + R
Sbjct: 72 DLARVPLGAEVRAGWPGPTTWLIP--PRPGIPDWLRGAHDSLAVRVTAHPVAAALCRVFG 129
Query: 149 SALALTSANLTG-QPSSVSVKDFENLWER 176
A+ TSANL+G +P+ V+ LW +
Sbjct: 130 GAIVSTSANLSGHRPARTPVR----LWRQ 154
>UNIPROTKB|Q48AU1 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:167879 "Colwellia psychrerythraea 34H"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 RefSeq:YP_266809.1 ProteinModelPortal:Q48AU1
STRING:Q48AU1 GeneID:3520388 KEGG:cps:CPS_0027 PATRIC:21463489
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
BioCyc:CPSY167879:GI48-144-MONOMER TIGRFAMs:TIGR00057
Uniprot:Q48AU1
Length = 183
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 36/137 (26%), Positives = 68/137 (49%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
+ ++A K G +IA PT+ ++G CD + EA+ R+ ++K R L + G S +
Sbjct: 4 KNVVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLP 63
Query: 88 FAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ +P +LL P +T ++ + ++N+ L+ ++I VR+ V +
Sbjct: 64 YIDDSKIPQDKRLTLLSRWPDGITQLVPK--NNNISSLLSGSFDTIAVRITSQPDVVALC 121
Query: 145 RGLESALALTSANLTGQ 161
+ + TSANL+GQ
Sbjct: 122 QQTNKPIVSTSANLSGQ 138
>TIGR_CMR|CPS_0027 [details] [associations]
symbol:CPS_0027 "putative RNA-binding protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
RefSeq:YP_266809.1 ProteinModelPortal:Q48AU1 STRING:Q48AU1
GeneID:3520388 KEGG:cps:CPS_0027 PATRIC:21463489 eggNOG:COG0009
HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
BioCyc:CPSY167879:GI48-144-MONOMER TIGRFAMs:TIGR00057
Uniprot:Q48AU1
Length = 183
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 36/137 (26%), Positives = 68/137 (49%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
+ ++A K G +IA PT+ ++G CD + EA+ R+ ++K R L + G S +
Sbjct: 4 KNVVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLP 63
Query: 88 FAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ +P +LL P +T ++ + ++N+ L+ ++I VR+ V +
Sbjct: 64 YIDDSKIPQDKRLTLLSRWPDGITQLVPK--NNNISSLLSGSFDTIAVRITSQPDVVALC 121
Query: 145 RGLESALALTSANLTGQ 161
+ + TSANL+GQ
Sbjct: 122 QQTNKPIVSTSANLSGQ 138
>UNIPROTKB|P45748 [details] [associations]
symbol:tsaC "protein involved in synthesis of
threonylcarbamoyladenosine-modified tRNA" species:83333
"Escherichia coli K-12" [GO:0070526 "threonylcarbamoyladenosine
biosynthetic process" evidence=IGI;IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000049 "tRNA binding" evidence=IEA;IDA]
[GO:0003725 "double-stranded RNA binding" evidence=IDA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:U18997 GO:GO:0003725 GO:GO:0000049 GO:GO:0006364 GO:GO:0070526
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
PIR:E65120 RefSeq:NP_417741.1 RefSeq:YP_492150.1 PDB:1HRU
PDBsum:1HRU ProteinModelPortal:P45748 SMR:P45748 DIP:DIP-12916N
IntAct:P45748 MINT:MINT-1230775 PRIDE:P45748
EnsemblBacteria:EBESCT00000004855 EnsemblBacteria:EBESCT00000017773
GeneID:12933460 GeneID:947783 KEGG:ecj:Y75_p3894 KEGG:eco:b3282
PATRIC:32121998 EchoBASE:EB2689 EcoGene:EG12840
ProtClustDB:PRK10634 BioCyc:EcoCyc:G7698-MONOMER
BioCyc:ECOL316407:JW3243-MONOMER EvolutionaryTrace:P45748
Genevestigator:P45748 Uniprot:P45748
Length = 190
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 44/144 (30%), Positives = 67/144 (46%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
AI L +VIA PT+ ++G CD S AV R+ E+K R L + + + +
Sbjct: 13 AIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI 72
Query: 90 ----VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
+TD + + S PGPVT V ++ + L +S+ VRV D V + +
Sbjct: 73 DDTMLTD-VQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVVALCQ 129
Query: 146 GLESALALTSANLTGQPSSVSVKD 169
L TSANL+G P +V +
Sbjct: 130 AYGKPLVSTSANLSGLPPCRTVDE 153
>UNIPROTKB|Q88B46 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:223283 "Pseudomonas syringae pv. tomato str.
DC3000" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 GO:GO:0008033 EMBL:AE016853 GenomeReviews:AE016853_GR
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
HSSP:P45748 RefSeq:NP_790033.1 ProteinModelPortal:Q88B46
GeneID:1181782 KEGG:pst:PSPTO_0174 PATRIC:19991500
ProtClustDB:CLSK865536 BioCyc:PSYR223283:GJIX-173-MONOMER
Uniprot:Q88B46
Length = 185
Score = 145 (56.1 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 57/187 (30%), Positives = 85/187 (45%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++A Q ++ G VIA PT+ ++G CD EAV R+ IK R L + ++ +
Sbjct: 8 QQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKLRPVEKGLILIADNIRQFD- 66
Query: 88 FAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGL-ESIGVRVPDSNFVRVI 143
F D P LD S PGP T ++ NL G+ E++ +RV D VR +
Sbjct: 67 FLFED-FPELWLDRMASTWPGPNTWLVPH---QNLLPEWITGIHETVALRVTDHPTVREL 122
Query: 144 ARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L L TSAN G+P++ S E + GG L R S + D+ G+
Sbjct: 123 C-ALVGPLISTSANPAGRPAARSRLRVEQYFRGQINGVLGGSLGGRRNPSVIRDIAT-GQ 180
Query: 204 FKILRPG 210
++R G
Sbjct: 181 --VMRAG 185
>UNIPROTKB|F1NT09 [details] [associations]
symbol:LOC428714 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR000791 InterPro:IPR006070 Pfam:PF01184 Pfam:PF01300
PROSITE:PS51163 GO:GO:0016020 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 EMBL:AADN02013506 IPI:IPI00602003
Ensembl:ENSGALT00000012180 GeneTree:ENSGT00390000010336 OMA:YSKYADA
Uniprot:F1NT09
Length = 825
Score = 163 (62.4 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 60/217 (27%), Positives = 102/217 (47%)
Query: 21 PATEAHAEEAI-QALKTGKVIAVPTDTLYGFACDACSS-EAVNRIYEIKGRKHTSPLAIC 78
PA +A + + I LK G +PTDT+Y AC+ +AV + + K + P+++
Sbjct: 611 PARKASSVKRIADILKNGGTCGIPTDTVYVLVA-ACNRPDAVEKAHRSKRQAQERPMSLW 669
Query: 79 VGDVSDINRFAVTDHLPHGLL----DSLLPGPVTVVLSRGESSNL----EKSLNPGL-ES 129
+ S + + HL LL D+ P P+++V+ RGE + + + G +S
Sbjct: 670 I---SSLKQLEPAKHLFSPLLWDFMDAAWPSPISLVIPRGEWVDFLGMKDSAKYVGTPQS 726
Query: 130 IGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPS 188
+ +R+PD + + L + +TSAN TG+ + + L ++ V G P
Sbjct: 727 VAIRIPDCSVTTHLI-DLVGPIVVTSANPTGEADTTHHNQVYAKLGDKVDAVLCDGPSPE 785
Query: 189 GRAGSTVVDLTRL--GKFKILRPGSA-KEETIAILEK 222
A STVVD T++ G R G K + + ILE+
Sbjct: 786 NIA-STVVDCTKIDSGNIGFFRVGIIPKSQVLQILEQ 821
>POMBASE|SPCC895.03c [details] [associations]
symbol:SPCC895.03c "SUA5/yciO/yrdC family protein Sua5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 PomBase:SPCC895.03c GO:GO:0005829
GO:GO:0005634 GO:GO:0006417 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0006400 GO:GO:0000781 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 PIR:T41641 RefSeq:NP_588044.1
ProteinModelPortal:O94530 STRING:O94530 EnsemblFungi:SPCC895.03c.1
GeneID:2539596 KEGG:spo:SPCC895.03c HOGENOM:HOG000076160
OMA:PLIVHID OrthoDB:EOG4C8C27 NextBio:20800753 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 Uniprot:O94530
Length = 408
Score = 103 (41.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 23 TEAHAEEAIQALK-TGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 81
T + E A L+ T +A PT+T+YG DA +EAV IY+ K R +PL + V
Sbjct: 38 TRSALENAANILRNTDYPVAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVAS 97
Query: 82 VSDINRFAVT 91
+ + R ++
Sbjct: 98 LDQLRRLLLS 107
Score = 101 (40.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 38/128 (29%), Positives = 59/128 (46%)
Query: 93 HLPHGLLDSLLPGPVTVVLSRGESSNLEKS--LNPGLESIGVRVPDSNFVRVIARGLESA 150
+LP L+ PGP++++L + +N S + G ++ VR+P + +S
Sbjct: 131 YLP--LIKKFWPGPLSILLPVVDEANPPVSPIVTAGQKTFAVRMPQHPVALALISISDSP 188
Query: 151 LALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRP 209
LA SAN + +PS K + +L + + DGG G STVV+ ILRP
Sbjct: 189 LAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGGACGVG-VESTVVN-GLCDPPVILRP 246
Query: 210 GSAKEETI 217
G E I
Sbjct: 247 GGISLEEI 254
>DICTYBASE|DDB_G0278955 [details] [associations]
symbol:DDB_G0278955 "YrdC domain-containing protein,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 dictyBase:DDB_G0278955
EMBL:AAFI02000024 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 eggNOG:COG0009 TIGRFAMs:TIGR00057
InterPro:IPR005145 Pfam:PF03481 RefSeq:XP_647810.1
ProteinModelPortal:Q54XJ3 STRING:Q54XJ3 EnsemblProtists:DDB0218132
GeneID:8621770 KEGG:ddi:DDB_G0278955 InParanoid:Q54XJ3 OMA:TDPVIVH
ProtClustDB:CLSZ2729382 Uniprot:Q54XJ3
Length = 403
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 44/155 (28%), Positives = 75/155 (48%)
Query: 13 ENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHT 72
+N A +V P E + EA +K G ++A PT+T+YG +A +AV I++ KGR T
Sbjct: 5 KNFAKIVNPTLE-NLIEAGNKIKNGGLVAFPTETVYGLGANALDKDAVLSIFKAKGRPLT 63
Query: 73 SPLAICVGDVS-DINRFAVTD---HLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLE 128
P+ + + + + +T+ + L D+ PGP+T+V E + + G
Sbjct: 64 DPVIVHIIESEYALKLLKLTEKQKEIFQVLSDNFWPGPLTIVAKSSELIPMIVTAETGY- 122
Query: 129 SIGVRVPDSNFVRVIARGLESALALTSANLTGQPS 163
+GVR P+ + + + +A SAN G S
Sbjct: 123 -VGVRFPNHPLAQQLIKHSGKPIAAPSANRFGHVS 156
>ZFIN|ZDB-GENE-030131-7332 [details] [associations]
symbol:wu:fj08f03 "wu:fj08f03" species:7955 "Danio
rerio" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
ZFIN:ZDB-GENE-030131-7332 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 EMBL:CR381540 GeneTree:ENSGT00390000010336
IPI:IPI00485023 Ensembl:ENSDART00000110424 Bgee:F1QWR2
Uniprot:F1QWR2
Length = 831
Score = 148 (57.2 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 56/215 (26%), Positives = 101/215 (46%)
Query: 20 RPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSS-EAVNRIYEIKGRKHTSPLAIC 78
R +T H + + +K G + +PTDT+Y AC+ +AV + Y +K + P+++
Sbjct: 609 RKSTSVH--QIAEIMKNGGICGMPTDTVYVLVA-ACNRPQAVEKAYSVKKQAKERPMSLW 665
Query: 79 VGDVSDIN--RFAVTDHLPHGLLDSLLPGPVTVVLSRG---ESSNL-EKSLNPGL-ESIG 131
V + + R ++ L +++ P +++V++R E L + S G +SI
Sbjct: 666 VASIKQLEPVRKQISPIL-WDFMEAAWPSSISLVIARAPWMEFFGLGDSSKYIGTPQSIA 724
Query: 132 VRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGR 190
+R PD + + +A+TSAN TG+ + + L ++ V G P
Sbjct: 725 IRNPDCTVATHLINAV-GPIAVTSANPTGEADTTHHNQVYAKLGDKVDGVLCDGPSPENI 783
Query: 191 AGSTVVDLTRL--GKFKILRPGSA-KEETIAILEK 222
A STVVD T++ G+ R G K + + I E+
Sbjct: 784 A-STVVDCTKIESGQIGFFRVGLIPKSKVLQIFEE 817
>UNIPROTKB|Q8X849 [details] [associations]
symbol:hypF "Transcriptional regulatory protein"
species:83334 "Escherichia coli O157:H7" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR004421 InterPro:IPR006070
InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503 PIRSF:PIRSF006256
PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792 GO:GO:0046872
GO:GO:0008270 InterPro:IPR017968 SUPFAM:SSF54975 PROSITE:PS00150
PROSITE:PS51160 EMBL:AE005174 GenomeReviews:AE005174_GR KO:K04656
GO:GO:0016743 GO:GO:0046944 PANTHER:PTHR10029:SF4
HOGENOM:HOG000278743 OMA:DRENTSM ProtClustDB:CLSK880463
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00143 HSSP:P30131 PIR:G85919 PIR:H91074
RefSeq:NP_289261.1 ProteinModelPortal:Q8X849 SMR:Q8X849
EnsemblBacteria:EBESCT00000027972 GeneID:957086 KEGG:ece:Z4020
PATRIC:18356601 Uniprot:Q8X849
Length = 750
Score = 143 (55.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 44/146 (30%), Positives = 70/146 (47%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKH--TSPLAICVGD 81
EA + AI LK G ++A+ + ACDA +S AV + + RKH PLA+ +
Sbjct: 200 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATL---RARKHRPAKPLAVML-- 254
Query: 82 VSDINRFAVTDHLPHGLLDSLL-PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
V D LP L P V++ + L + PGL +GV +P +
Sbjct: 255 -------PVADGLPDAARQLLTTPAAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQ 307
Query: 141 RVIARGLESALALTSANLTGQPSSVS 166
++ + L+ L +TS NL+G+P ++S
Sbjct: 308 HLLLQELQCPLVMTSGNLSGKPPAIS 333
>TAIR|locus:2078668 [details] [associations]
symbol:AT3G01920 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AC010797 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 UniGene:At.48610
UniGene:At.41213 EMBL:AY079025 EMBL:AY143853 IPI:IPI00545644
RefSeq:NP_566156.2 HSSP:P45847 ProteinModelPortal:Q9SGI3 SMR:Q9SGI3
IntAct:Q9SGI3 STRING:Q9SGI3 PRIDE:Q9SGI3 EnsemblPlants:AT3G01920.1
GeneID:821220 KEGG:ath:AT3G01920 TAIR:At3g01920
HOGENOM:HOG000265231 InParanoid:Q9SGI3 OMA:LTLMCRD PhylomeDB:Q9SGI3
ProtClustDB:CLSN2690515 Genevestigator:Q9SGI3 Uniprot:Q9SGI3
Length = 307
Score = 137 (53.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 45/145 (31%), Positives = 67/145 (46%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
+ I LK G V +PTDT+Y ACD + AV R+ IK + + PL+I + DI+
Sbjct: 84 QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143
Query: 88 FAVT----DHLPHG----LLDSLLPGPVTVVLSRGESSNLEKS-LNPGLESI-------- 130
F + D H + LPGP T +L+ S L K + G S+
Sbjct: 144 FTMGFPRGDGHGHANVFRAVKQCLPGPYTFILTA--SKELPKQCVGYGTTSVKYASRKNV 201
Query: 131 GVRVPDSNFVRVIARGLESALALTS 155
GVR+ D + I + +++ L TS
Sbjct: 202 GVRISDDALCQAILQQMDAPLICTS 226
>UNIPROTKB|P30131 [details] [associations]
symbol:hypF "hydrogenase maturation protein,
carbamoyltransferase" species:83333 "Escherichia coli K-12"
[GO:0051604 "protein maturation" evidence=IMP;IDA] [GO:0016743
"carboxyl- or carbamoyltransferase activity" evidence=IEA;IDA]
[GO:0046944 "protein carbamoylation" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA;IDA] InterPro:IPR004421 InterPro:IPR006070
InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503 PIRSF:PIRSF006256
PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0008270 InterPro:IPR017968 SUPFAM:SSF54975
PROSITE:PS00150 PROSITE:PS00151 PROSITE:PS51160 GO:GO:0051604
EMBL:U29579 EMBL:D14422 eggNOG:COG0068 KO:K04656 GO:GO:0016743
GO:GO:0046944 PANTHER:PTHR10029:SF4 PIR:D65051 RefSeq:NP_417192.1
RefSeq:YP_490921.1 PDB:1GXT PDB:1GXU PDBsum:1GXT PDBsum:1GXU
ProteinModelPortal:P30131 SMR:P30131 DIP:DIP-10000N
MINT:MINT-1276849 PRIDE:P30131 EnsemblBacteria:EBESCT00000000313
EnsemblBacteria:EBESCT00000000314 EnsemblBacteria:EBESCT00000000315
EnsemblBacteria:EBESCT00000000316 EnsemblBacteria:EBESCT00000017271
GeneID:12930433 GeneID:944963 KEGG:ecj:Y75_p2650 KEGG:eco:b2712
PATRIC:32120822 EchoBASE:EB1512 EcoGene:EG11551
HOGENOM:HOG000278743 OMA:DRENTSM ProtClustDB:CLSK880463
BioCyc:EcoCyc:EG11551-MONOMER BioCyc:ECOL316407:JW5433-MONOMER
BioCyc:MetaCyc:EG11551-MONOMER UniPathway:UPA00335
EvolutionaryTrace:P30131 Genevestigator:P30131 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 TIGRFAMs:TIGR00143
Uniprot:P30131
Length = 750
Score = 141 (54.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 44/146 (30%), Positives = 70/146 (47%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKH--TSPLAICVGD 81
EA + AI LK GK++A+ + ACDA +S AV + + RKH PLA+ +
Sbjct: 200 EAALQAAIAQLKMGKIVAIKGIGGFHLACDARNSNAVATL---RARKHRPAKPLAVML-- 254
Query: 82 VSDINRFAVTDHLPHGLLDSLL-PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
V D LP L P V++ + L + P L +GV +P +
Sbjct: 255 -------PVADGLPDAARQLLTTPAAPIVLVDKKYVPELCDDIAPDLNEVGVMLPANPLQ 307
Query: 141 RVIARGLESALALTSANLTGQPSSVS 166
++ + L+ L +TS NL+G+P ++S
Sbjct: 308 HLLLQELQCPLVMTSGNLSGKPPAIS 333
>TIGR_CMR|GSU_0306 [details] [associations]
symbol:GSU_0306 "hydrogenase maturation protein HypF"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003998
"acylphosphatase activity" evidence=ISS] [GO:0006464 "cellular
protein modification process" evidence=ISS] InterPro:IPR004421
InterPro:IPR006070 InterPro:IPR011125 InterPro:IPR018485
Pfam:PF01300 Pfam:PF02782 Pfam:PF07503 PIRSF:PIRSF006256
PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792 GO:GO:0046872
GO:GO:0005975 GO:GO:0008270 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR017968 SUPFAM:SSF54975 PROSITE:PS00150 PROSITE:PS51160
GO:GO:0016773 KO:K04656 GO:GO:0016743 GO:GO:0046944
PANTHER:PTHR10029:SF4 HOGENOM:HOG000278743 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 TIGRFAMs:TIGR00143
RefSeq:NP_951366.1 ProteinModelPortal:Q74GE0 GeneID:2686937
KEGG:gsu:GSU0306 PATRIC:22023356 OMA:MACFPLC ProtClustDB:CLSK827735
BioCyc:GSUL243231:GH27-245-MONOMER Uniprot:Q74GE0
Length = 763
Score = 140 (54.3 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 45/157 (28%), Positives = 77/157 (49%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTS--PLAICVGDVSDI 85
++ ++ L GK++A+ Y A DA + AV E++ RKH P A+ D+ +
Sbjct: 202 DQTVELLTEGKIVAIKGLGGYHLAVDAANDAAVA---ELRRRKHRDEKPFAVMARDMEAV 258
Query: 86 NRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
RFA+ D + LL P V+L + S+ L + P IG +P + ++
Sbjct: 259 ARFALVDSVEARLLTG--PEHPIVLLRKRPSTILSGRVAPANGYIGTMLPYTPLHHLLLE 316
Query: 146 GLESALALTSANLTGQPSSVSVKDFENLWERCACVYD 182
+AL +TS NL+ +P +S +D E + ER + + D
Sbjct: 317 ERFAALVMTSGNLSDEP--ISYRDDEAV-ERLSAIAD 350
>UNIPROTKB|G4MQP5 [details] [associations]
symbol:MGG_16276 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 EMBL:CM001231 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930
RefSeq:XP_003709944.1 ProteinModelPortal:G4MQP5
EnsemblFungi:MGG_16276T0 GeneID:12985299 KEGG:mgr:MGG_16276
Uniprot:G4MQP5
Length = 461
Score = 130 (50.8 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 60/217 (27%), Positives = 91/217 (41%)
Query: 13 ENKAGLVRPATEAHAEEAIQALKTGK------VIAV-PTDTLYGFACDACSS-EAVNRIY 64
E GL AT + A I A K G+ ++ V D L AC S N
Sbjct: 85 ETVYGLGADATRSAAVRGIYAAK-GRPSDNPLIVHVCDLDMLRALLSPACDSGNGTNS-- 141
Query: 65 EIKGRKHTSPLAICVGDVSDINRFAVTDHLPH---GLLDSLLPGPVTVVLSRGESSNLEK 121
+ + P G +S+ ++ ++ D +P L++ PGP+T++L + S L
Sbjct: 142 QAVSEEAAEPATTANG-MSN-SKTSIDDPIPSIYLPLMERFWPGPLTILLPNPQPSRLAP 199
Query: 122 SLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKD-FENLWERCACV 180
+ GL + G R+P S + R LA SAN + +PS + ++L R +
Sbjct: 200 EVTAGLPTFGARMPASPLALTLIRLAGVPLAAPSANASTRPSPTTAHHVLDDLDGRLELI 259
Query: 181 YDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETI 217
DGG G STVVD +LRPG E +
Sbjct: 260 LDGGPCGVG-VESTVVD-GLCDPPAVLRPGGVAIEDL 294
>TIGR_CMR|CJE_0725 [details] [associations]
symbol:CJE_0725 "[NiFe] hydrogenase maturation protein
HypF" species:195099 "Campylobacter jejuni RM1221" [GO:0003998
"acylphosphatase activity" evidence=ISS] [GO:0006464 "cellular
protein modification process" evidence=ISS] InterPro:IPR004421
InterPro:IPR006070 InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503
PIRSF:PIRSF006256 PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792
GO:GO:0046872 GO:GO:0008270 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR017968 SUPFAM:SSF54975 PROSITE:PS00150 PROSITE:PS51160
eggNOG:COG0068 KO:K04656 GO:GO:0016743 GO:GO:0046944
PANTHER:PTHR10029:SF4 HOGENOM:HOG000278743 OMA:DRENTSM
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00143 RefSeq:YP_178736.1 ProteinModelPortal:Q5HVE9
STRING:Q5HVE9 GeneID:3231953 KEGG:cjr:CJE0725 PATRIC:20043179
ProtClustDB:CLSK878869 BioCyc:CJEJ195099:GJC0-742-MONOMER
Uniprot:Q5HVE9
Length = 729
Score = 127 (49.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 45/174 (25%), Positives = 85/174 (48%)
Query: 10 VSVENKAG-LVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKG 68
V ++N G ++ EA + A + LK GK++A+ + CDA + EA+ + ++
Sbjct: 187 VFLKNPKGEILAKDQEAFIQSA-KFLKEGKILAIKGMGGFHLMCDAFNEEALKTL-RLRK 244
Query: 69 RKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLE 128
+ P A+ D+ A D LL +L P+ V+L ++ +L + P ++
Sbjct: 245 NRPKKPFALMCKDLQSAKELAFIDEKEEALLGGVL-API-VILKAKKAFSL---IAPDVD 299
Query: 129 SIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYD 182
IG+ + + ++ + L TSANL+G+ S+ +KD NL ++ V+D
Sbjct: 300 KIGIMLAYTPLHLLLFEYFKGNLVATSANLSGE--SI-IKDEFNLRQKLDKVFD 350
>UNIPROTKB|Q83AA2 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:227377 "Coxiella burnetii RSA 493"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 TIGRFAMs:TIGR00057
RefSeq:NP_820978.1 HSSP:P45748 ProteinModelPortal:Q83AA2
GeneID:1209916 KEGG:cbu:CBU_2003 PATRIC:17932747 OMA:IAIRVTA
ProtClustDB:CLSK915181 BioCyc:CBUR227377:GJ7S-1976-MONOMER
Uniprot:Q83AA2
Length = 186
Score = 113 (44.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 36/143 (25%), Positives = 62/143 (43%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A++ L+ G VIA PT+ +YG CD + +AV ++ IK R + + +
Sbjct: 10 DAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVE-- 67
Query: 89 AVTDHL-PHGL--LDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
+T+ + P L + PGP T S + +I +RV +++ +
Sbjct: 68 PLTEPIDPKALARVFDTWPGPFTWTFPA--SKEAPHWITGQHSTIAIRVTAHPLAKLLCQ 125
Query: 146 GLESALALTSANLTGQPSSVSVK 168
L +SAN G+P VK
Sbjct: 126 RFAGPLISSSANQEGEPPIRDVK 148
>TIGR_CMR|CBU_2003 [details] [associations]
symbol:CBU_2003 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 TIGRFAMs:TIGR00057
RefSeq:NP_820978.1 HSSP:P45748 ProteinModelPortal:Q83AA2
GeneID:1209916 KEGG:cbu:CBU_2003 PATRIC:17932747 OMA:IAIRVTA
ProtClustDB:CLSK915181 BioCyc:CBUR227377:GJ7S-1976-MONOMER
Uniprot:Q83AA2
Length = 186
Score = 113 (44.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 36/143 (25%), Positives = 62/143 (43%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A++ L+ G VIA PT+ +YG CD + +AV ++ IK R + + +
Sbjct: 10 DAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVE-- 67
Query: 89 AVTDHL-PHGL--LDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
+T+ + P L + PGP T S + +I +RV +++ +
Sbjct: 68 PLTEPIDPKALARVFDTWPGPFTWTFPA--SKEAPHWITGQHSTIAIRVTAHPLAKLLCQ 125
Query: 146 GLESALALTSANLTGQPSSVSVK 168
L +SAN G+P VK
Sbjct: 126 RFAGPLISSSANQEGEPPIRDVK 148
>GENEDB_PFALCIPARUM|PFL0175c [details] [associations]
symbol:PFL0175c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE014188
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
InterPro:IPR005145 Pfam:PF03481 RefSeq:XP_001350444.1
ProteinModelPortal:Q8I610 PRIDE:Q8I610
EnsemblProtists:PFL0175c:mRNA GeneID:811088 KEGG:pfa:PFL0175c
EuPathDB:PlasmoDB:PF3D7_1203500 HOGENOM:HOG000281153
ProtClustDB:CLSZ2431888 Uniprot:Q8I610
Length = 556
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 38/169 (22%), Positives = 78/169 (46%)
Query: 38 KVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV----SDINRFAVTD- 92
K+I +PT+T+YG ++ S ++ I+ +K R + P+ V ++ + + +
Sbjct: 28 KLIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPIISHVYNIYQAYDQLYHINIYEK 87
Query: 93 HLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALA 152
++ + L PGP++++ + + L L + VR+PD+ R I + + +A
Sbjct: 88 YIIYILSKYFWPGPLSIIAKAKKEAPL--ILTAYTQFCAVRIPDNKITREIIKICNTPIA 145
Query: 153 LTSANLTGQPSSV-SVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
SAN S S+ ++ ++D G G STV+ +T+
Sbjct: 146 APSANKFQHISPTNSLHVYDEFKNEDLLIFDDGQCDVG-IESTVLKITK 193
>UNIPROTKB|Q8I610 [details] [associations]
symbol:PFL0175c "Conserved Plasmodium protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE014188
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
InterPro:IPR005145 Pfam:PF03481 RefSeq:XP_001350444.1
ProteinModelPortal:Q8I610 PRIDE:Q8I610
EnsemblProtists:PFL0175c:mRNA GeneID:811088 KEGG:pfa:PFL0175c
EuPathDB:PlasmoDB:PF3D7_1203500 HOGENOM:HOG000281153
ProtClustDB:CLSZ2431888 Uniprot:Q8I610
Length = 556
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 38/169 (22%), Positives = 78/169 (46%)
Query: 38 KVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDV----SDINRFAVTD- 92
K+I +PT+T+YG ++ S ++ I+ +K R + P+ V ++ + + +
Sbjct: 28 KLIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPIISHVYNIYQAYDQLYHINIYEK 87
Query: 93 HLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALA 152
++ + L PGP++++ + + L L + VR+PD+ R I + + +A
Sbjct: 88 YIIYILSKYFWPGPLSIIAKAKKEAPL--ILTAYTQFCAVRIPDNKITREIIKICNTPIA 145
Query: 153 LTSANLTGQPSSV-SVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
SAN S S+ ++ ++D G G STV+ +T+
Sbjct: 146 APSANKFQHISPTNSLHVYDEFKNEDLLIFDDGQCDVG-IESTVLKITK 193
>UNIPROTKB|Q81NA2 [details] [associations]
symbol:hypF "[NiFe] hydrogenase maturation protein HypF"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR004421 InterPro:IPR006070
InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503 PIRSF:PIRSF006256
PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
InterPro:IPR017968 SUPFAM:SSF54975 PROSITE:PS00150 PROSITE:PS51160
KO:K04656 GO:GO:0016743 GO:GO:0046944 PANTHER:PTHR10029:SF4
HOGENOM:HOG000278743 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00143 OMA:MACFPLC RefSeq:NP_845601.1
RefSeq:YP_019947.1 RefSeq:YP_029327.1 HSSP:P30131
ProteinModelPortal:Q81NA2 IntAct:Q81NA2 DNASU:1088507
EnsemblBacteria:EBBACT00000008690 EnsemblBacteria:EBBACT00000018158
EnsemblBacteria:EBBACT00000020900 GeneID:1088507 GeneID:2816819
GeneID:2848313 KEGG:ban:BA_3313 KEGG:bar:GBAA_3313 KEGG:bat:BAS3070
ProtClustDB:CLSK584522 BioCyc:BANT260799:GJAJ-3132-MONOMER
BioCyc:BANT261594:GJ7F-3241-MONOMER Uniprot:Q81NA2
Length = 776
Score = 114 (45.2 bits), Expect = 0.00088, P = 0.00088
Identities = 40/154 (25%), Positives = 70/154 (45%)
Query: 9 QVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKG 68
QV ++ G +T+ E+ I LK GK++A+ Y D + EAV + + K
Sbjct: 193 QVQLKTTDG-TNVSTDNPIEKTIDLLKKGKILAIKGLGGYHLVVDPMNHEAVKELRKRKK 251
Query: 69 RKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLE 128
R P A+ + D+ FA LL S P+ V+L++ ++ + +
Sbjct: 252 RDE-KPFALMSSQLDDVKNFAEITKNEETLLVSK-ERPI-VLLNKKDNEYISSDVASSNN 308
Query: 129 SIGVRVPDSNFVRVIARGLESALALTSANLTGQP 162
+ GV + + +I RG +L TSAN++ +P
Sbjct: 309 TYGVMLAYTPLHHLILRGNFISLIATSANVSDEP 342
>TIGR_CMR|BA_3313 [details] [associations]
symbol:BA_3313 "hydrogenase maturation protein HypF"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006464 "cellular protein
modification process" evidence=ISS] InterPro:IPR004421
InterPro:IPR006070 InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503
PIRSF:PIRSF006256 PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008270 InterPro:IPR017968
SUPFAM:SSF54975 PROSITE:PS00150 PROSITE:PS51160 KO:K04656
GO:GO:0016743 GO:GO:0046944 PANTHER:PTHR10029:SF4
HOGENOM:HOG000278743 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00143 OMA:MACFPLC RefSeq:NP_845601.1
RefSeq:YP_019947.1 RefSeq:YP_029327.1 HSSP:P30131
ProteinModelPortal:Q81NA2 IntAct:Q81NA2 DNASU:1088507
EnsemblBacteria:EBBACT00000008690 EnsemblBacteria:EBBACT00000018158
EnsemblBacteria:EBBACT00000020900 GeneID:1088507 GeneID:2816819
GeneID:2848313 KEGG:ban:BA_3313 KEGG:bar:GBAA_3313 KEGG:bat:BAS3070
ProtClustDB:CLSK584522 BioCyc:BANT260799:GJAJ-3132-MONOMER
BioCyc:BANT261594:GJ7F-3241-MONOMER Uniprot:Q81NA2
Length = 776
Score = 114 (45.2 bits), Expect = 0.00088, P = 0.00088
Identities = 40/154 (25%), Positives = 70/154 (45%)
Query: 9 QVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKG 68
QV ++ G +T+ E+ I LK GK++A+ Y D + EAV + + K
Sbjct: 193 QVQLKTTDG-TNVSTDNPIEKTIDLLKKGKILAIKGLGGYHLVVDPMNHEAVKELRKRKK 251
Query: 69 RKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLE 128
R P A+ + D+ FA LL S P+ V+L++ ++ + +
Sbjct: 252 RDE-KPFALMSSQLDDVKNFAEITKNEETLLVSK-ERPI-VLLNKKDNEYISSDVASSNN 308
Query: 129 SIGVRVPDSNFVRVIARGLESALALTSANLTGQP 162
+ GV + + +I RG +L TSAN++ +P
Sbjct: 309 TYGVMLAYTPLHHLILRGNFISLIATSANVSDEP 342
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 232 232 0.00085 113 3 11 23 0.46 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 592 (63 KB)
Total size of DFA: 162 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.91u 0.11s 20.02t Elapsed: 00:00:01
Total cpu time: 19.92u 0.11s 20.03t Elapsed: 00:00:01
Start: Sat May 11 07:38:28 2013 End: Sat May 11 07:38:29 2013