BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026839
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus
GN=Yrdc PE=2 SV=1
Length = 280
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ L+ G V+AVPTDTLYG AC A S A++ +Y +KGR PLA+C+G V+D+ R+
Sbjct: 74 AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
+P LL+ L PGPVT+V+ R E L K LNP +G+R+PD F+ +A+
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSE--ELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 190
Query: 150 ALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKF 204
LALTSANL+ Q SS+SV++F++LW + V DGG + P R GSTVVDL+ GKF
Sbjct: 191 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 250
Query: 205 KILRPGSAKEETIAILE-KHSLV 226
I+R G A E T AIL+ K+ L+
Sbjct: 251 GIIRSGCALENTTAILQGKYGLL 273
>sp|Q86U90|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens
GN=YRDC PE=1 SV=1
Length = 279
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 132/199 (66%), Gaps = 8/199 (4%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ L+ G V+AVPTDTLYG AC A S A+ +Y +KGR PLA+C+G V+D+ R+
Sbjct: 73 AVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC 132
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
+P GLL LLPGPVT+V+ R E L K LNP +G+R+PD F++ +A+ E
Sbjct: 133 RV-RVPEGLLKDLLPGPVTLVMERSE--ELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEG 189
Query: 150 ALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKF 204
LALTSANL+ Q SS++V++F++LW + + V DGG + P R GSTVVDL+ GKF
Sbjct: 190 PLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKF 249
Query: 205 KILRPGSAKEETIAILEKH 223
I+RPG A E T AIL++
Sbjct: 250 GIIRPGCALESTTAILQQK 268
>sp|Q0VC80|YRDC_BOVIN YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC
PE=2 SV=1
Length = 276
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 135/202 (66%), Gaps = 8/202 (3%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ L+ G V+AVPTDTLYG AC A SEA+ +Y +KGR T PLA+C+G V+D+ R+
Sbjct: 71 AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
+P GLL LLPGPVT+V+ R E L K LNP +G+R+PD F++ +A+
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSE--ELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 187
Query: 150 ALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKF 204
LALTSANL+ Q SS++V++F++LW + + DGG + P R GSTVVDL+ GKF
Sbjct: 188 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 247
Query: 205 KILRPGSAKEETIAILEKHSLV 226
I+RPG A E T AIL+++ L+
Sbjct: 248 GIIRPGCALESTSAILQEYGLL 269
>sp|Q3U5F4|YRDC_MOUSE YrdC domain-containing protein, mitochondrial OS=Mus musculus
GN=Yrdc PE=1 SV=1
Length = 280
Score = 167 bits (422), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 130/199 (65%), Gaps = 8/199 (4%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ L+ G V+AVPTDTLYG AC A SS A++ +Y +KGR PLA+C+G V+D+ R+
Sbjct: 74 AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133
Query: 90 VTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES 149
+P LL+ L PGPVT+V+ R E L K LNP +G+R+PD F+ +A+
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSE--ELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 190
Query: 150 ALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKF 204
LALTSANL+ Q SS+SV++F++LW + V DGG + P R GSTVVDL+ GKF
Sbjct: 191 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 250
Query: 205 KILRPGSAKEETIAILEKH 223
I+RPG A E T +IL++
Sbjct: 251 GIIRPGCALENTTSILQQK 269
>sp|Q60369|Y062_METJA Uncharacterized protein MJ0062 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0062 PE=3 SV=1
Length = 207
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 24/184 (13%)
Query: 12 VENKAGLVRPATEAHAEEAIQALK----TGKVIAVPTDTLYGFACDACSSEAVNRIYEIK 67
++NK + E ++ ++ LK GK++ TDTLYG + +A + +AV ++Y IK
Sbjct: 3 LKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIK 62
Query: 68 GRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGL 127
R+ PL+ICV D ++I ++A + L ++D LPGP+T++L + PG+
Sbjct: 63 RREFNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKK----------KPGI 112
Query: 128 ------ESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFEN-LWERCACV 180
+ IG+R+PD +R ++ L TSAN++G+ S +V + + + ++ V
Sbjct: 113 PDIVAKDYIGIRIPDEPIIRELSI---VPLTTTSANISGKESPTTVDEIDKEVLKKVDYV 169
Query: 181 YDGG 184
D G
Sbjct: 170 IDIG 173
>sp|P39153|YWLC_BACSU Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
OS=Bacillus subtilis (strain 168) GN=ywlC PE=3 SV=1
Length = 346
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 9/193 (4%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A L+ +V+A PT+T+YG +A +++AV +IYE KGR +PL + + D+S +
Sbjct: 23 QAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDL 82
Query: 89 AVTDHLPHG---LLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
T P L+ PG +T++L + L + GLE++ +R+PD + R
Sbjct: 83 --TGPAPEKAKTLMKRFWPGALTLILP-CKPDALSPRVTAGLETVAIRMPDHPLALALIR 139
Query: 146 GLESALALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKF 204
+A SANL+G+PS + +L R A + DGG P+G + V
Sbjct: 140 ESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGG--PTGIGVESTVLSCADDIP 197
Query: 205 KILRPGSAKEETI 217
+LRPG +E I
Sbjct: 198 VLLRPGGITKEQI 210
>sp|Q10618|Y1301_MYCTU Uncharacterized protein Rv1301/MT1340 OS=Mycobacterium tuberculosis
GN=Rv1301 PE=3 SV=1
Length = 217
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 13/194 (6%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ A+K G+++ +PTDT+YG DA S AV + KGR P+ + VG I
Sbjct: 20 AVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLV 79
Query: 90 VTDHLPHG---LLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
+ +P G L+ + PG +++V+ + S L+ L ++ +R+P + R
Sbjct: 80 YS--MPDGARELIRAFWPGALSLVVVQAPS--LQWDLGDAHGTVMLRMPLHPVAIELLRE 135
Query: 147 LESALALTSANLTGQPSSVSVKDFEN-LWERCACVYDGGVLPS-GRAGSTVVDLTRLGKF 204
+ +A++SAN++G P V + + L + A D G PS +AGST+VDLT
Sbjct: 136 V-GPMAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAG--PSEQQAGSTIVDLTG-ATP 191
Query: 205 KILRPGSAKEETIA 218
++LRPG E IA
Sbjct: 192 RVLRPGPVSTERIA 205
>sp|A7N129|RIMN_VIBHB tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
harveyi (strain ATCC BAA-1116 / BB120) GN=rimN PE=3 SV=1
Length = 185
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
E+ ++AL+TG+VIA PT+ ++G CD + EA+ ++ E+K R L + +
Sbjct: 5 EQVLKALQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLP 64
Query: 88 FAVTDHLPHGLLDSL---LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ L LD + PGP T ++ S + ++ +SI VRV D V+ +
Sbjct: 65 YIDESQLTQEQLDQVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMC 122
Query: 145 RGLESALALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGR 190
L TSANLTGQP ++ ++ E L +R + G SGR
Sbjct: 123 NAFGKPLTSTSANLTGQPPCMTTEEVEEQLGDRLVAILRGET--SGR 167
>sp|P32579|SUA5_YEAST tRNA threonylcarbamoyladenosine biosynthesis protein SUA5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SUA5 PE=1 SV=1
Length = 426
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 18 LVRPATEAHAEEAIQALK-TGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLA 76
+ P TEA EA + ++ T + +A PT+T+YG A + +V IY K R +PL
Sbjct: 43 ITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPLI 102
Query: 77 ICVGDVSDINR----------FAVTDHLP---HGLLDSLLPGPVTVVL--SRGESSNLEK 121
V + +NR ++ D++P L+ SL PGP+T++L E S L K
Sbjct: 103 THVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALSK 162
Query: 122 SLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPS-SVSVKDFENLWERCACV 180
+ VR+P + R + ++ +A SAN + +PS +++ + +L ++ +
Sbjct: 163 LTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVYHDLKDKIPII 222
Query: 181 YDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETIAIL 220
DGG G STVVD +LRPG E I L
Sbjct: 223 LDGGACKVG-VESTVVD-GLCNPPTLLRPGGFTYEEIVKL 260
>sp|P45831|Y1136_MYCLE Uncharacterized protein ML1136 OS=Mycobacterium leprae (strain TN)
GN=ML1136 PE=3 SV=1
Length = 220
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 15/195 (7%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ ALK G+++ +PTDT+YG DA AV + KGR P+ + VG I
Sbjct: 23 AVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWHTIEGLV 82
Query: 90 VTDHLPHG---LLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVP-DSNFVRVIAR 145
T +P G L+ + PG +++V+ S N + L ++ +R+P S + ++
Sbjct: 83 YT--MPDGARELIRAFWPGALSLVVVHAPSLNWD--LGDAHGTVMLRMPLHSVAIELLCE 138
Query: 146 GLESALALTSANLTGQPSSVSVKDFE-NLWERCACVYDGGVLPSG-RAGSTVVDLTRLGK 203
+A++SAN++GQP++V V L E D G PS +A ST+VDLT
Sbjct: 139 --VGPMAVSSANVSGQPAAVDVDGARGQLGELVGVYLDAG--PSAQQAASTIVDLTE-AT 193
Query: 204 FKILRPGSAKEETIA 218
+ILR G IA
Sbjct: 194 PRILRAGPVSVARIA 208
>sp|A8GYH9|RIMN_SHEPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=rimN PE=3 SV=1
Length = 187
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A + ++ G VIA PT+ +YG CD + EA+N++ +IK R L + GD + +
Sbjct: 8 DAAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPY 67
Query: 89 AVTDHLPHGLL---DSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
L L S PGP T ++ L K L+ +SI VRV V+ +
Sbjct: 68 IDESQLNAQQLAFAQSKWPGPFTFIMPV--KPGLSKLLSGAFDSIAVRVTAHAGVKALCA 125
Query: 146 GLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVD 197
+ + TSANL+GQ ++S + +E G L S + ST++D
Sbjct: 126 AIHKPIVSTSANLSGQEPALSPLAVKQQFEGIISGLVVGELGSQASPSTIID 177
>sp|A8GKG1|RIMN_SERP5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Serratia proteamaculans (strain 568) GN=rimN PE=3
SV=1
Length = 189
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 31 IQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF-- 88
I AL +VIA PT+ ++G CD S +AVN + +K R L + D + + +
Sbjct: 13 IDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPYID 72
Query: 89 -AVTDHLPHGLLDSLLPGPVTVVL-SRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
+ + + PGPVT V+ +R E+S L L S+ VRV D V+ + R
Sbjct: 73 DTALNEQQRATMFASWPGPVTWVIPARSETSRL---LTGRFNSLAVRVSDHPLVQQLCRQ 129
Query: 147 LESALALTSANLTGQ 161
L TSANL+GQ
Sbjct: 130 FGKPLVSTSANLSGQ 144
>sp|A0KR66|RIMN_SHESA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain ANA-3) GN=rimN PE=3 SV=1
Length = 188
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 8/191 (4%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H E + G VIA PT+ +YG CD + A+ ++ +K R L + + S
Sbjct: 3 QLHPSEIKDLVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ ++ + L +SI VRV + V
Sbjct: 63 QLVDYVDESQLSAEQLEFAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHDGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
R + + L L TSANL G+ ++S + N +E G L R ST++D R
Sbjct: 121 RALCQALGKPLVSTSANLAGEDPALSGDEILNAFEGKIDALVLGALGEQRQPSTIID-AR 179
Query: 201 LGKFKILRPGS 211
G KILR G
Sbjct: 180 SG--KILRNGQ 188
>sp|Q6LLJ9|RIMN_PHOPR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Photobacterium profundum GN=rimN PE=3 SV=2
Length = 185
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++ + AL++G+VIA PT+ ++G CD + +AV ++ +K R L + + +
Sbjct: 5 QQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANYQQLQP 64
Query: 88 F---AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGL----ESIGVRVPDSNFV 140
+ A L + S PGPVT V+ ++K ++P L SI VRV D V
Sbjct: 65 YIDDAQLSDLQKQKIFSTWPGPVTWVMP------VKKDISPLLTGKFTSIAVRVSDHPLV 118
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFEN-LWERCACVYDG 183
+ + + TSANLTG P +V + +N L E + + +G
Sbjct: 119 QKLCHQFGKPITSTSANLTGLPPCKTVTEVQNQLGEHLSAILEG 162
>sp|Q8EKQ3|RIMN_SHEON tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella oneidensis (strain MR-1) GN=rimN PE=3 SV=1
Length = 188
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 8/191 (4%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + + S
Sbjct: 3 QLHPSDIKDVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ ++ + L +SI VRV V
Sbjct: 63 QLLAYVDESQLTDEQLELAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
R + + L L TSANL G+ ++S + N++E G L R ST++D R
Sbjct: 121 RALCQALGKPLVSTSANLAGEDPALSGDEILNVFEGKIDALVLGQLGEQRQPSTIID-AR 179
Query: 201 LGKFKILRPGS 211
G KILR G
Sbjct: 180 SG--KILRNGQ 188
>sp|Q0I0R7|RIMN_SHESR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain MR-7) GN=rimN PE=3 SV=1
Length = 188
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 8/191 (4%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H E + G VIA PT+ +YG CD + A+ ++ +K R L + + S
Sbjct: 3 QLHPSEIKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ ++ + L +SI VRV V
Sbjct: 63 QLVDYVDESQLSAEQLEFAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
R + + L L TSANL G+ ++S + N +E G L R ST++D R
Sbjct: 121 RALCQALGKPLVSTSANLAGEDPALSGDEILNAFEGKIDALVLGSLGEQRQPSTIID-AR 179
Query: 201 LGKFKILRPGS 211
G KILR G
Sbjct: 180 SG--KILRNGQ 188
>sp|Q0HPA1|RIMN_SHESM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain MR-4) GN=rimN PE=3 SV=1
Length = 188
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 8/191 (4%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H E + G VIA PT+ +YG CD + A+ ++ +K R L + + S
Sbjct: 3 QLHPSEIKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ ++ + L +SI VRV V
Sbjct: 63 QLVDYVDESQLSAEQLEFAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTR 200
R + + L L TSANL G+ ++S + N +E G L R ST++D R
Sbjct: 121 RALCQALGKPLVSTSANLAGEDPALSGDEILNAFEGKIDALVLGSLGEQRQPSTIID-AR 179
Query: 201 LGKFKILRPGS 211
G KILR G
Sbjct: 180 SG--KILRNGQ 188
>sp|A0KEX6|RIMN_AERHH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC
7966 / NCIB 9240) GN=rimN PE=3 SV=1
Length = 186
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
E A+ AL+ VIA T+ ++G CD S AV+R+ IK R L + D++ +
Sbjct: 6 ELAVAALQRDGVIAYATEAVFGLGCDPDSESAVHRLLAIKQRPVEKGLILIAADLAQLQD 65
Query: 88 FAVTDHLPHGLL---DSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ D L L ++ PGP T ++ SN L ++ VRV V+ +
Sbjct: 66 YIDLDQLTSEQLARVEASWPGPFTWIMP--ARSNTPAWLTGQFTTLAVRVTAHPQVQALC 123
Query: 145 RGLESALALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
R L TSANLTG+ + V D E L + A + G V G+A + + R G
Sbjct: 124 RAFGKPLVSTSANLTGEEPARRVADIGELLASQLAYILPGEV--GGQANPSEIKDARTG- 180
Query: 204 FKILRP 209
I+RP
Sbjct: 181 -AIIRP 185
>sp|Q1QTJ8|RIMN_CHRSD tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB 13768) GN=rimN PE=3 SV=1
Length = 185
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 6/172 (3%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A+ AL+ G ++A PT+ ++G CD A+ R+ +K R L + GD+ + +
Sbjct: 10 DAVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAKGLILIAGDMDQLEPW 69
Query: 89 -AVTDHLPHGLLDSLLPGPVT-VVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
A D L L PGP T +V G + L + + S+ VRV D VR +
Sbjct: 70 LAGLDALQRARLAESWPGPNTWLVPDNGRARPLLRGEH---TSLAVRVSDHPLVRQLCAA 126
Query: 147 LESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDL 198
L +SAN G+P ++S D + + DG + R ST+ DL
Sbjct: 127 FGGPLVSSSANRAGEPPAMSAADVRAAFGEAVTLLDGALGGYARP-STIRDL 177
>sp|A1JRY6|RIMN_YERE8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=rimN PE=3 SV=1
Length = 190
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 18 LVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAI 77
+ R A + +QAL+ +VIA PT+ ++G CD S +AVN + +K R L +
Sbjct: 1 MSRNENRAALSDVLQALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLIL 60
Query: 78 CVGDVSDINRF----AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVR 133
+ + + A+TD + S+ PGPVT V+ + + L +S+ VR
Sbjct: 61 IAANYEQLKPYVDDSALTDSQRETIF-SVWPGPVTWVIPTHPET--PRWLTGSFDSLAVR 117
Query: 134 VPDSNFVRVIARGLESALALTSANLTGQ 161
V D V+ + L TSANL+GQ
Sbjct: 118 VSDHPLVQQLCSQYGKPLVSTSANLSGQ 145
>sp|Q9KVT5|RIMN_VIBCH tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=rimN PE=3 SV=1
Length = 188
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++A+ AL+ G VIA PT+ ++G CD + A+ R+ IK R + + + +
Sbjct: 8 QQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRP 67
Query: 88 FAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ L L +L P P+T V+ S + + +++ VRV D V+ +
Sbjct: 68 YVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQKLC 125
Query: 145 RGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L TSANL+GQP+ V+ ++ L + A V +G SGR G + + R
Sbjct: 126 LAFGKPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEGKT--SGRHGPSEIRDAR--S 181
Query: 204 FKILRPG 210
++LR G
Sbjct: 182 LQVLRQG 188
>sp|A5F4C5|RIMN_VIBC3 tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 /
O395) GN=rimN PE=3 SV=1
Length = 188
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
++A+ AL+ G VIA PT+ ++G CD + A+ R+ IK R + + + +
Sbjct: 8 QQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRP 67
Query: 88 FAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ L L +L P P+T V+ S + + +++ VRV D V+ +
Sbjct: 68 YVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQKLC 125
Query: 145 RGLESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L TSANL+GQP+ V+ ++ L + A V +G SGR G + + R
Sbjct: 126 LAFGKPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEGKT--SGRHGPSEIRDAR--S 181
Query: 204 FKILRPG 210
++LR G
Sbjct: 182 LQVLRQG 188
>sp|Q5QXJ5|RIMN_IDILO tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rimN PE=3 SV=1
Length = 186
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 69/147 (46%), Gaps = 26/147 (17%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDI-- 85
E A A+KTG +IA PT+ ++G CD + AV ++ +K R L + D S +
Sbjct: 6 EAAHSAIKTG-IIAYPTEAVFGLGCDPRNEVAVQKLLSLKQRPAEKGLILIAADYSQLLP 64
Query: 86 ----------NRFAVTDHLPHGLLDSLLPGPVTVVLS-RGESSNLEKSLNPGLESIGVRV 134
RF+V H PGPVT++L R S L L G ++I VRV
Sbjct: 65 YVEDSAIAQDKRFSVLSH---------WPGPVTLILPVRKGVSTL---LTGGRDTIAVRV 112
Query: 135 PDSNFVRVIARGLESALALTSANLTGQ 161
R + R L AL TSANLTGQ
Sbjct: 113 TAHEPARALCRELGHALVSTSANLTGQ 139
>sp|B0TLD6|RIMN_SHEHH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella halifaxensis (strain HAW-EB4) GN=rimN PE=3
SV=1
Length = 187
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 34 LKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDH 93
++ G VIA PT+ +YG CD + +A+ R+ EIK R L + GD + +
Sbjct: 13 VEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYIDESQ 72
Query: 94 LPH---GLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESA 150
L + S PGP T ++ L L+ +SI VRV V+ + +
Sbjct: 73 LSAEQLAFVHSKWPGPFTFIMPV--KPGLSNLLSGSFDSIAVRVTAHEGVKALCAAINKP 130
Query: 151 LALTSANLTGQPSSVS 166
+ TSANLTGQ ++S
Sbjct: 131 IVSTSANLTGQDPALS 146
>sp|A8FP81|RIMN_SHESH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sediminis (strain HAW-EB3) GN=rimN PE=3
SV=1
Length = 185
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
E +E + ++ G V+A PT+ +YG CD + EA+ R+ +K R L + D
Sbjct: 3 EQAPDEVQEIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALKKRPWQKGLILVASDYQ 62
Query: 84 DINRFAVTDHLPHGLLDSLL---PGPVTVVL--SRGESSNLEKSLNPGLESIGVRVPDSN 138
+ + L + L+ + PGP T ++ G S+ L S N S+ VRV
Sbjct: 63 QLLPYIDESRLTNEQLNKVFVKWPGPFTFIMPIKPGLSNLLCGSFN----SLAVRVSSHP 118
Query: 139 FVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVD 197
++ I + L L TSAN G+P ++S ++ ++ G L + R ST+VD
Sbjct: 119 TIQAICQRLGKPLVSTSANHAGEPPAMSCEEIIAKFDGEIDALISGSLGAERKPSTIVD 177
>sp|Q87AQ5|RIMN_XYLFT tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
GN=rimN PE=3 SV=1
Length = 187
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 22 ATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 81
AT EA+ AL+ G VIA PT+ ++G CD AV+ + IK R L + +
Sbjct: 2 ATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAE 61
Query: 82 VSDINRFAVTDHL-PHGL--LDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSN 138
++ + + D L P L + + PGP T VL S+ + + VR+
Sbjct: 62 LNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHP 119
Query: 139 FVRVIARGLESALALTSANLTGQPSSVSVKDFE-NLWERCACVYDGGVLPSG 189
V + R AL TSAN+ GQP + +D + +L A + DG P+G
Sbjct: 120 LVSALCRAWNMALISTSANVAGQPPARRREDLDPSLLPHLAGIVDG---PTG 168
>sp|B2I8S9|RIMN_XYLF2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xylella fastidiosa (strain M23) GN=rimN PE=3 SV=2
Length = 187
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 22 ATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 81
AT EA+ AL+ G VIA PT+ ++G CD AV+ + IK R L + +
Sbjct: 2 ATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAE 61
Query: 82 VSDINRFAVTDHL-PHGL--LDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSN 138
++ + + D L P L + + PGP T VL S+ + + VR+
Sbjct: 62 LNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHP 119
Query: 139 FVRVIARGLESALALTSANLTGQPSSVSVKDFE-NLWERCACVYDGGVLPSG 189
V + R AL TSAN+ GQP + +D + +L A + DG P+G
Sbjct: 120 LVSALCRAWNMALISTSANVAGQPPARRREDLDPSLLPHLAGIVDG---PTG 168
>sp|Q9PEV9|RIMN_XYLFA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xylella fastidiosa (strain 9a5c) GN=rimN PE=3 SV=1
Length = 187
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 22 ATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 81
AT EA+ AL+ G VIA PT+ ++G CD AV+ + IK R L + +
Sbjct: 2 ATTLTLSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAE 61
Query: 82 VSDINRFAVTDHL-PHGL--LDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSN 138
++ + + D L P L + + PGP T VL S+ + + VR+
Sbjct: 62 LNTLQDWLDLDTLSPERLHEVQTSWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHP 119
Query: 139 FVRVIARGLESALALTSANLTGQPSSVSVKDFE-NLWERCACVYDGGVLPSG 189
V + R AL TSAN+ GQP + +D + +L A + DG P+G
Sbjct: 120 LVSALCRAWNMALISTSANVAGQPPARRREDLDPSLLPHLAGIVDG---PTG 168
>sp|A1SR31|RIMN_PSYIN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Psychromonas ingrahamii (strain 37) GN=rimN PE=3 SV=1
Length = 191
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
++ +A++ LK+ VIA PT++++G CD A+ +I +K R L + +
Sbjct: 7 QSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIE 66
Query: 84 DINRFAVTDHLPHGLLDSL---LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ ++A L L + PGP+T ++ + NL K ++ ES+ VRV V
Sbjct: 67 QLEKYADFSLLTAAQLTVIKKTWPGPITWIVPSQK--NLSKLISGDFESVAVRVTAHPIV 124
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLWE 175
R I + + TSANL+ +++S + +++
Sbjct: 125 RQICLAFDKPIISTSANLSSLEAALSSQQVNKMFK 159
>sp|A3QJE8|RIMN_SHELP tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=rimN PE=3 SV=1
Length = 185
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 31 IQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAV 90
++ + G VIA PT+ +YG CD + EA+ ++ ++K R L + D + + +
Sbjct: 10 VETVLQGGVIAYPTEAVYGLGCDPDNDEAIQKLLDLKQRPWQKGLILVASDFNQLTPYID 69
Query: 91 TDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
+ L L S PGP T ++ + L L+ +S+ VRV + V+ + + L
Sbjct: 70 SSVLTEAQLQSAFDKWPGPFTFIMPK--RPGLSSLLSGQFDSLAVRVSNHPGVQALCQAL 127
Query: 148 ESALALTSANLTGQ 161
+ TSANLTG+
Sbjct: 128 GKPIVSTSANLTGE 141
>sp|Q87KE2|RIMN_VIBPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rimN PE=3 SV=1
Length = 185
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
E+ + AL+ G+VIA PT+ ++G CD + +A+ ++ ++K R L + +
Sbjct: 5 EQVLNALQQGEVIAYPTEGVFGVGCDPDNPDAIQKLLDLKQRPVEKGLILIAASYEQLLP 64
Query: 88 FAVTDHL-PHGL--LDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIA 144
+ L P L + + PGP T ++ S + ++ +SI VRV D V+ +
Sbjct: 65 YIDESQLTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQKMC 122
Query: 145 RGLESALALTSANLTGQPSSVSVKDFEN 172
L TSANL+G P ++ ++ E
Sbjct: 123 NAFGKPLTSTSANLSGLPPCMTTEEVEQ 150
>sp|A6WHB6|RIMN_SHEB8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS185) GN=rimN PE=3 SV=1
Length = 188
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 16/195 (8%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + D
Sbjct: 3 QLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ +++ K L +SI VRV V
Sbjct: 63 QLLAYVDESQLTAEQLEFAFSKWPGPFTFVMPI--KAHVSKYLCGEFDSIAVRVSAHAGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVS----VKDFENLWERCACVYDGGVLPSGRAGSTVV 196
+ + R L L TSANL G+ +++ + DF + G L R ST++
Sbjct: 121 QALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDALVL----GELGEQRQPSTII 176
Query: 197 DLTRLGKFKILRPGS 211
D R G KILR G
Sbjct: 177 D-ARSG--KILRNGQ 188
>sp|A3CYL0|RIMN_SHEB5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=rimN PE=3 SV=1
Length = 188
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 16/195 (8%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + D
Sbjct: 3 QLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ +++ K L +SI VRV V
Sbjct: 63 QLLAYVDESQLTAEQLEFAFSKWPGPFTFVMPI--KAHVSKYLCGEFDSIAVRVSAHAGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVS----VKDFENLWERCACVYDGGVLPSGRAGSTVV 196
+ + R L L TSANL G+ +++ + DF + G L R ST++
Sbjct: 121 QALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDALVL----GELGEQRQPSTII 176
Query: 197 DLTRLGKFKILRPGS 211
D R G KILR G
Sbjct: 177 D-ARSG--KILRNGQ 188
>sp|P0AFR6|YCIO_SHIFL Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1
Length = 206
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A++ ++ G VI PTD+ Y C A+ RI I+ + D+S+++ +
Sbjct: 19 QAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTY 78
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 148
+ D++ L+ + PG T +L +G + L ++IG+RVP + + + L
Sbjct: 79 SFVDNVAFRLMKNNTPGNYTFIL-KGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALG 137
Query: 149 SALALTSANLTGQPSSVSVKDFENLWERCACVYD----GGVLPSGRAGSTVVDLT 199
+ TS L G S + D E + +R D GG L G+ +TV+DLT
Sbjct: 138 EPMLSTSLMLPG--SEFTESDPEEIKDRLEKQVDLIIHGGYL--GQKPTTVIDLT 188
>sp|P0AFR4|YCIO_ECOLI Uncharacterized protein YciO OS=Escherichia coli (strain K12)
GN=yciO PE=1 SV=1
Length = 206
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A++ ++ G VI PTD+ Y C A+ RI I+ + D+S+++ +
Sbjct: 19 QAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTY 78
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 148
+ D++ L+ + PG T +L +G + L ++IG+RVP + + + L
Sbjct: 79 SFVDNVAFRLMKNNTPGNYTFIL-KGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALG 137
Query: 149 SALALTSANLTGQPSSVSVKDFENLWERCACVYD----GGVLPSGRAGSTVVDLT 199
+ TS L G S + D E + +R D GG L G+ +TV+DLT
Sbjct: 138 EPMLSTSLMLPG--SEFTESDPEEIKDRLEKQVDLIIHGGYL--GQKPTTVIDLT 188
>sp|P0AFR5|YCIO_ECOL6 Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yciO PE=3 SV=1
Length = 206
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A++ ++ G VI PTD+ Y C A+ RI I+ + D+S+++ +
Sbjct: 19 QAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTY 78
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 148
+ D++ L+ + PG T +L +G + L ++IG+RVP + + + L
Sbjct: 79 SFVDNVAFRLMKNNTPGNYTFIL-KGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALG 137
Query: 149 SALALTSANLTGQPSSVSVKDFENLWERCACVYD----GGVLPSGRAGSTVVDLT 199
+ TS L G S + D E + +R D GG L G+ +TV+DLT
Sbjct: 138 EPMLSTSLMLPG--SEFTESDPEEIKDRLEKQVDLIIHGGYL--GQKPTTVIDLT 188
>sp|Q7MGL3|RIMN_VIBVY tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain YJ016) GN=rimN PE=3 SV=2
Length = 186
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 25 AHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSD 84
++ ++ ++ALK G+V+A PT+ ++G CD + A+ R+ IK R L + D
Sbjct: 3 SNLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQ 62
Query: 85 INRFAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGL-ESIGVRVPDSNFV 140
+ + L L + PGP T V+ +S +L G +++ VRV D V
Sbjct: 63 LQPYLDLTSLSAEQLQRVFATWPGPYTWVMP---ASARASALVTGYRQTVAVRVSDHPLV 119
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFEN 172
+ + L TSANL+GQ +V+ ++
Sbjct: 120 QKLCSEYGKPLTSTSANLSGQTECKTVEQVQD 151
>sp|Q8DDD6|RIMN_VIBVU tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain CMCP6) GN=rimN PE=3 SV=1
Length = 186
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 25 AHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSD 84
++ ++ ++ALK G+V+A PT+ ++G CD + A+ R+ IK R L + D
Sbjct: 3 SNLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQ 62
Query: 85 INRFAVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGL-ESIGVRVPDSNFV 140
+ + L L + PGP T V+ +S +L G +++ VRV D V
Sbjct: 63 LQPYLDLTSLSAEQLQRVFATWPGPYTWVMP---ASARASALVTGYRQTVAVRVSDHPLV 119
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFEN 172
+ + L TSANL+GQ +V+ ++
Sbjct: 120 QKLCSEYGKPLTSTSANLSGQTECKTVEQVQD 151
>sp|A1RDY7|RIMN_SHESW tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain W3-18-1) GN=rimN PE=3 SV=1
Length = 188
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 16/195 (8%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + D
Sbjct: 3 QLHPSDIKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ + + K L +SI VRV V
Sbjct: 63 QLLAYVDESQLTAEQLEFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVS----VKDFENLWERCACVYDGGVLPSGRAGSTVV 196
+ + R L L TSANL G+ +++ + DF + G L R ST++
Sbjct: 121 QALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDALVL----GELGEQRQPSTII 176
Query: 197 DLTRLGKFKILRPGS 211
D R G KILR G
Sbjct: 177 D-ARSG--KILRNGQ 188
>sp|A4Y1D2|RIMN_SHEPC tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
GN=rimN PE=3 SV=1
Length = 188
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 16/195 (8%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + D
Sbjct: 3 QLHPSDIKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ + + K L +SI VRV V
Sbjct: 63 QLLAYVDESQLTAEQLEFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVS----VKDFENLWERCACVYDGGVLPSGRAGSTVV 196
+ + R L L TSANL G+ +++ + DF + G L R ST++
Sbjct: 121 QALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDALVL----GELGEQRQPSTII 176
Query: 197 DLTRLGKFKILRPGS 211
D R G KILR G
Sbjct: 177 D-ARSG--KILRNGQ 188
>sp|O94530|SUA5_SCHPO tRNA threonylcarbamoyladenosine biosynthesis protein sua5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sua5 PE=3 SV=1
Length = 408
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 30/221 (13%)
Query: 23 TEAHAEEAIQALK-TGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 81
T + E A L+ T +A PT+T+YG DA +EAV IY+ K R +PL + V
Sbjct: 38 TRSALENAANILRNTDYPVAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVAS 97
Query: 82 VSDINRFAVTD----------------------HLPHGLLDSLLPGPVTVVLSRGESSNL 119
+ + R ++ +LP L+ PGP++++L + +N
Sbjct: 98 LDQLRRLLLSAYPKAKSEVKNQAHDSEEIIPKVYLP--LIKKFWPGPLSILLPVVDEANP 155
Query: 120 EKS--LNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKD-FENLWER 176
S + G ++ VR+P + +S LA SAN + +PS K + +L +
Sbjct: 156 PVSPIVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGK 215
Query: 177 CACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETI 217
+ DGG G + V L ILRPG E I
Sbjct: 216 IPLILDGGACGVGVESTVVNGLC--DPPVILRPGGISLEEI 254
>sp|Q9I7A5|RIMN_PSEAE tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=rimN PE=3 SV=1
Length = 185
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 27 AEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDIN 86
A+ A + ++ G VIA PT+ ++G CD + +AV R+ +K R L + ++ ++
Sbjct: 7 AQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLD 66
Query: 87 RFAVTDHLPHGLLDSL---LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVI 143
F + D LP LD L PGP T ++ E L + + +S+ VRV D V+ +
Sbjct: 67 -FLLED-LPDVWLDRLAGTWPGPNTWLVPHQE--RLPEWVTGVHDSVAVRVTDHPLVQEL 122
Query: 144 ARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L L TSAN G+P++ + E + GG L R S + DL
Sbjct: 123 CH-LTGPLISTSANPAGRPAARTRLRVEQYFHDELDAILGGALGGRRNPSLIRDLV---T 178
Query: 204 FKILRP 209
+++RP
Sbjct: 179 GQVIRP 184
>sp|Q02V59|RIMN_PSEAB tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rimN
PE=3 SV=1
Length = 185
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 27 AEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDIN 86
A+ A + ++ G VIA PT+ ++G CD + +AV R+ +K R L + ++ ++
Sbjct: 7 AQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLD 66
Query: 87 RFAVTDHLPHGLLDSL---LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVI 143
F + D LP LD L PGP T ++ E L + + +S+ VRV D V+ +
Sbjct: 67 -FLLED-LPDVWLDRLAGTWPGPNTWLVPHQE--RLPEWVTGVHDSVAVRVTDHPLVQEL 122
Query: 144 ARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGK 203
L L TSAN G+P++ + E + GG L R S + DL
Sbjct: 123 CH-LTGPLISTSANPAGRPAARTRLRVEQYFHDELDAILGGALGGRRNPSLIRDLV---T 178
Query: 204 FKILRP 209
+++RP
Sbjct: 179 GQVIRP 184
>sp|A8AQH7|RIMN_CITK8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=rimN PE=3 SV=2
Length = 190
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF- 88
A+ L VIA PT+ ++G CD S AVNR+ E+K R L + + + +
Sbjct: 13 AVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANFEQLKPYI 72
Query: 89 ---AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
+TD + + PGPVT V ++ + L +S+ VRV D V + +
Sbjct: 73 DDSMLTDTQREAIF-ACWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVVSLCQ 129
Query: 146 GLESALALTSANLTGQPSSVSVKD 169
L TSANLTG P +V++
Sbjct: 130 AYGKPLVSTSANLTGLPPCRTVEE 153
>sp|P45103|Y1198_HAEIN Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1198 PE=3 SV=1
Length = 207
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A++ L+ G VI PTD+ Y C A++RI I+ + D+S+++ +
Sbjct: 19 QAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTY 78
Query: 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSL-NPGLESIGVRVPDSNFVRVIARG- 146
A ++ + L+ + PG T +L+ + L + L ++IG+RVPD+ +
Sbjct: 79 ARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLSAL 136
Query: 147 ----LESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLG 202
L +L L + T Q ++D L + + GG L G+ +TVVDLT
Sbjct: 137 GEPILSCSLMLPNEEHTTQSDPEEIRD--RLEHQVDLIIHGGYL--GQEPTTVVDLTEES 192
Query: 203 KFKILRPGS 211
ILR GS
Sbjct: 193 PV-ILREGS 200
>sp|A4WF91|RIMN_ENT38 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Enterobacter sp. (strain 638) GN=rimN PE=3 SV=2
Length = 190
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 29 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88
+A+ LK +VIA PT+ ++G CD S AV R+ E+K R L + + + +
Sbjct: 12 QAVDVLKNEEVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQLKPY 71
Query: 89 AVTDHLPHGLLDSLL---PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
L +++ PGPVT V S+ L +S+ VRV D V +
Sbjct: 72 IDDSMLTEQQRNTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVELCE 129
Query: 146 GLESALALTSANLTGQP 162
L TSANLTG P
Sbjct: 130 TFGKPLVSTSANLTGLP 146
>sp|Q12TA0|RIMN_SHEDO tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=rimN PE=3 SV=1
Length = 188
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 34 LKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDH 93
+ G VIA PT+ +YG CD + +A+ ++ +K R L + + +
Sbjct: 13 IAQGGVIAYPTEAVYGLGCDPDNDQAIEKLLAVKQRPWQKGLILVASSFEQLLPYVDVAQ 72
Query: 94 LPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESA 150
L LD S PGP T V+ S++ L +SI VRV VR + L
Sbjct: 73 LTQAQLDFAHSKWPGPFTFVMP--VKSHVSNKLRGEFDSIAVRVSAHPIVRELCDSLNKP 130
Query: 151 LALTSANLTGQ 161
L TSANL GQ
Sbjct: 131 LVSTSANLAGQ 141
>sp|A4VFI1|RIMN_PSEU5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas stutzeri (strain A1501) GN=rimN PE=3 SV=1
Length = 185
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ ++ + ++ G VIA PT+ ++G CD +AV R+ +K R L I + D
Sbjct: 4 DWRVQQVARVVRAGGVIAYPTEAVWGVGCDPWDEDAVLRLLALKERPVEKGL-ILIADTV 62
Query: 84 DINRFAVTDHLPHGLLDSL---LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ F + D LP LD L PGP T ++ L + + +S+ +RV D V
Sbjct: 63 EQFDF-LLDDLPERWLDRLSGTWPGPNTWLVP--HRGRLPEWITGRHDSVALRVTDHPLV 119
Query: 141 RVIARGLESALALTSANLTGQPSSVSVKDFENLW-ERCACVYDGGVLPSGRAGSTVVDLT 199
+ + L L TSAN G+P++ S E + ++ V++G + GR +V+
Sbjct: 120 KRLC-ALTGPLVSTSANPAGRPAARSRLRVEQYFPQQLDAVFNGAL--GGRRNPSVIRDL 176
Query: 200 RLGKFKILRP 209
R G +++RP
Sbjct: 177 RSG--EVIRP 184
>sp|A6TET6|RIMN_KLEP7 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=rimN PE=3 SV=1
Length = 190
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 30 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89
A+ LK VIA PT+ ++G CD S AV R+ E+K R L + + +
Sbjct: 13 AVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYI 72
Query: 90 VTDHLPHGLLDSLL---PGPVTVVL-SRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 145
L +++ PGPVT V +R E+ + L +S+ VRV + V +
Sbjct: 73 DDSRLSDSQREAIFSCWPGPVTFVFPARPETP---RWLTGRFDSLAVRVTNHPLVIELCE 129
Query: 146 GLESALALTSANLTGQP 162
L TSANLTGQP
Sbjct: 130 AYGKPLVSTSANLTGQP 146
>sp|A9KUA7|RIMN_SHEB9 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS195) GN=rimN PE=3 SV=1
Length = 188
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 16/195 (8%)
Query: 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVS 83
+ H + + G VIA PT+ +YG CD + A+ ++ +K R L + D
Sbjct: 3 QLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQ 62
Query: 84 DINRFAVTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFV 140
+ + L L+ S PGP T V+ + + K L +SI VRV V
Sbjct: 63 QLLAYVDESQLTAEQLEFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGV 120
Query: 141 RVIARGLESALALTSANLTGQPSSVS----VKDFENLWERCACVYDGGVLPSGRAGSTVV 196
+ + R L L TSANL G+ +++ + DF + G L R ST++
Sbjct: 121 QALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDALVL----GELGEQRQPSTII 176
Query: 197 DLTRLGKFKILRPGS 211
D R G KILR G
Sbjct: 177 D-ARSG--KILRNGQ 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,348,387
Number of Sequences: 539616
Number of extensions: 3427032
Number of successful extensions: 6347
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6031
Number of HSP's gapped (non-prelim): 184
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)