Query 026839
Match_columns 232
No_of_seqs 136 out of 1113
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0009 SUA5 Putative translat 100.0 1.4E-57 3E-62 385.5 23.1 194 24-220 13-207 (211)
2 TIGR00057 Sua5/YciO/YrdC/YwlC 100.0 7.7E-56 1.7E-60 374.2 21.5 189 24-217 8-197 (201)
3 PRK11630 hypothetical protein; 100.0 2E-55 4.3E-60 372.9 21.0 188 24-216 14-204 (206)
4 PRK10634 tRNA(ANN) t(6)A37 thr 100.0 4.6E-54 9.9E-59 360.4 20.0 180 24-210 7-190 (190)
5 PF01300 Sua5_yciO_yrdC: Telom 100.0 1.8E-53 4E-58 353.5 15.7 176 32-210 1-179 (179)
6 TIGR00143 hypF [NiFe] hydrogen 100.0 7.2E-41 1.6E-45 326.5 23.5 199 9-213 149-348 (711)
7 KOG3051 RNA binding/translatio 100.0 5.7E-32 1.2E-36 229.5 10.7 186 25-213 17-205 (261)
8 COG0068 HypF Hydrogenase matur 100.0 1.2E-27 2.6E-32 227.7 18.8 198 9-210 182-381 (750)
9 COG2192 Predicted carbamoyl tr 95.6 0.24 5.2E-06 47.7 12.3 145 26-181 379-545 (555)
10 cd07985 LPLAT_GPAT Lysophospho 63.7 19 0.00041 31.3 5.7 50 22-71 99-156 (235)
11 PF02543 CmcH_NodU: Carbamoylt 60.0 20 0.00043 33.1 5.4 66 26-92 253-327 (360)
12 PF05785 CNF1: Rho-activating 53.6 5.7 0.00012 35.3 0.7 33 124-162 103-135 (281)
13 cd00354 FBPase Fructose-1,6-bi 49.4 17 0.00036 33.0 3.1 60 28-89 234-312 (315)
14 COG1638 DctP TRAP-type C4-dica 47.9 44 0.00096 30.4 5.6 68 75-148 108-186 (332)
15 PLN02262 fructose-1,6-bisphosp 47.1 14 0.00031 33.8 2.3 61 27-89 252-331 (340)
16 PRK09293 fructose-1,6-bisphosp 44.3 23 0.00049 32.3 3.1 61 27-89 241-320 (327)
17 PLN02349 glycerol-3-phosphate 44.2 29 0.00063 32.6 3.8 46 24-71 280-336 (426)
18 PLN02542 fructose-1,6-bisphosp 43.6 17 0.00037 34.2 2.2 61 27-89 329-408 (412)
19 PF09837 DUF2064: Uncharacteri 38.6 49 0.0011 25.5 3.8 30 24-53 75-105 (122)
20 COG4821 Uncharacterized protei 34.1 3.1E+02 0.0067 23.7 9.2 130 25-185 26-168 (243)
21 PRK09375 quinolinate synthetas 34.1 77 0.0017 28.9 4.8 82 28-112 80-164 (319)
22 COG1560 HtrB Lauroyl/myristoyl 33.7 42 0.00091 30.3 3.1 35 17-51 174-208 (308)
23 TIGR00091 tRNA (guanine-N(7)-) 33.5 56 0.0012 26.8 3.6 24 24-47 112-135 (194)
24 COG0379 NadA Quinolinate synth 32.5 84 0.0018 28.6 4.7 84 27-113 81-167 (324)
25 PF00926 DHBP_synthase: 3,4-di 31.9 1.3E+02 0.0028 25.3 5.6 58 27-89 1-64 (194)
26 COG0220 Predicted S-adenosylme 30.5 57 0.0012 28.1 3.3 23 24-46 144-166 (227)
27 PF00316 FBPase: Fructose-1-6- 30.5 31 0.00068 31.4 1.7 61 26-88 239-318 (324)
28 TIGR00506 ribB 3,4-dihydroxy-2 29.6 1.3E+02 0.0029 25.4 5.3 58 26-88 4-67 (199)
29 PF03279 Lip_A_acyltrans: Bact 27.6 48 0.001 29.0 2.4 28 18-46 173-200 (295)
30 COG0158 Fbp Fructose-1,6-bisph 27.0 46 0.001 30.2 2.2 62 25-88 238-318 (326)
31 PF04472 DUF552: Protein of un 26.3 51 0.0011 22.9 1.9 25 21-45 6-30 (73)
32 KOG1540 Ubiquinone biosynthesi 25.5 61 0.0013 28.9 2.6 20 22-41 192-211 (296)
33 PF02390 Methyltransf_4: Putat 23.5 59 0.0013 27.1 2.1 25 22-46 111-135 (195)
34 COG2371 UreE Urease accessory 23.3 4.1E+02 0.0088 21.6 8.7 85 32-159 54-138 (155)
35 PRK05773 3,4-dihydroxy-2-butan 23.2 2E+02 0.0044 24.7 5.3 58 27-89 3-66 (219)
36 PRK01130 N-acetylmannosamine-6 22.5 4.5E+02 0.0098 21.8 12.4 42 24-79 22-63 (221)
37 PF08241 Methyltransf_11: Meth 22.5 46 0.00099 22.8 1.1 22 21-42 74-95 (95)
38 PRK00014 ribB 3,4-dihydroxy-2- 22.4 2.1E+02 0.0046 24.8 5.3 59 25-88 19-83 (230)
39 PRK07764 DNA polymerase III su 22.3 95 0.0021 32.0 3.6 85 58-145 100-189 (824)
40 KOG3999 Checkpoint 9-1-1 compl 22.3 96 0.0021 27.6 3.2 35 128-162 156-192 (284)
41 PF08351 DUF1726: Domain of un 22.1 60 0.0013 23.8 1.6 25 23-47 24-48 (92)
42 PRK06553 lipid A biosynthesis 21.0 1.1E+02 0.0023 27.2 3.4 14 27-40 194-207 (308)
43 PRK14121 tRNA (guanine-N(7)-)- 20.8 71 0.0015 29.9 2.2 24 24-47 215-238 (390)
44 PF02082 Rrf2: Transcriptional 20.5 1.8E+02 0.0039 20.3 3.9 35 22-56 37-73 (83)
45 PRK05298 excinuclease ABC subu 20.2 2.3E+02 0.005 28.2 5.8 77 18-111 12-89 (652)
No 1
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-57 Score=385.47 Aligned_cols=194 Identities=37% Similarity=0.607 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcHHHHHhccC
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLL 103 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~~~l~~~~~ 103 (232)
++.+++|++.|++|++|+|||||+|||+|++.|++||+|||++|+|+.+|||+++|+|++++..|+.+++..+++++.||
T Consensus 13 ~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~~~~~~~~~l~~~fw 92 (211)
T COG0009 13 PRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYADVPDVARKLLKAFW 92 (211)
T ss_pred hHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred CCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChHHHH-hhhccccEEEc
Q 026839 104 PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFE-NLWERCACVYD 182 (232)
Q Consensus 104 PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~~~~-~~~~~vd~ivd 182 (232)
|||+|||+++++.... +..+++.+|||||||+||++++||+++|.||++||||+||++++++.+++. ++.+++|+|+|
T Consensus 93 PGPlT~Il~~~~~~~~-~~~~~~~~TiavRvP~hpi~~~Li~~~G~Pl~stSANlsG~ps~tt~~ev~~~~~~~v~~iid 171 (211)
T COG0009 93 PGPLTFILPATKEVPR-RLVTAGLSTIAVRVPDHPIALALIEALGEPLASTSANLSGQPSPTTAEEVRADFGGQVDLIID 171 (211)
T ss_pred CCCeEEEEeCCCCCCh-hhhcCCCCeEEEECCCCHHHHHHHHHhCCceEEcCcCcCCCCCCCCHHHHHHHhcccCeEEEe
Confidence 9999999998543222 677778889999999999999999999999999999999999999999975 45578999999
Q ss_pred CcccCCCCCCCeEEEcccCCceEEEecCCChHHHHHHH
Q 026839 183 GGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETIAIL 220 (232)
Q Consensus 183 ~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~~~~~~~l 220 (232)
+|.+..+ .+|||||++. ++++|+|+|+++.+.+..+
T Consensus 172 gg~~~~g-~pSTIiDlt~-~~~~ilR~G~i~~~~i~~~ 207 (211)
T COG0009 172 GGPCRGG-LPSTIIDLTD-DPPRILRPGAISLEEIEKL 207 (211)
T ss_pred CCccCCC-CCceEEECCC-CCcEEEeCCCCCHHHHHHH
Confidence 9988655 7999999995 6889999999997665433
No 2
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=100.00 E-value=7.7e-56 Score=374.17 Aligned_cols=189 Identities=34% Similarity=0.585 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcHHHHHhccC
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLL 103 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~~~l~~~~~ 103 (232)
++.+++++++|++||+|+|||||+|||+|+++|++|++|||++|+|+.+|||++||+|++++.+|+.+++..++++++||
T Consensus 8 ~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~~~~~~~~~~~~l~~~~~ 87 (201)
T TIGR00057 8 QRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYAYVPDDAKRLMKKFW 87 (201)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHHHhCCCCCCCeEEEECCHHHHHHHhcCCHHHHHHHHhcC
Confidence 45699999999999999999999999999999999999999999999999999999999999999988777889999999
Q ss_pred CCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChHHHHh-hhccccEEEc
Q 026839 104 PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFEN-LWERCACVYD 182 (232)
Q Consensus 104 PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~~~~~-~~~~vd~ivd 182 (232)
|||+|+|+++++ .+++.+.++.+|||||||+|+++++|++.+|.||++||||+||++++++.+++.+ +.+.+|+|+|
T Consensus 88 Pgp~T~Il~~~~--~~~~~l~~~~~tigiRvP~~~~~~~L~~~~g~PL~~TSAN~sG~~~~~~~~~i~~~~~~~vd~ild 165 (201)
T TIGR00057 88 PGPLTLVLKKTP--EIPRRVSGKRKTIGIRVPDNPIALELLEELGKPIVATSANLSGKPSATDVEEAVDELGKLVDLIID 165 (201)
T ss_pred CCCeEEEEECCC--CCCHhHcCCCCeEEEECCCCHHHHHHHHHhCCCEEECCCCCCCCCCCCCHHHHHHHhCCCccEEEc
Confidence 999999999865 5788888888999999999999999999999999999999999999999999754 5567999999
Q ss_pred CcccCCCCCCCeEEEcccCCceEEEecCCChHHHH
Q 026839 183 GGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETI 217 (232)
Q Consensus 183 ~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~~~~~ 217 (232)
+|.+.. +.+|||||+++ ++++|+|+|+++ +.+
T Consensus 166 ~g~~~~-~~~STVid~~~-~~~~ilR~G~~~-~~i 197 (201)
T TIGR00057 166 AGPCLG-GEPSTIIDLTD-DTPKVLREGVGS-EPI 197 (201)
T ss_pred CCCCCC-CCCCcEEEccC-CceEEEecCCCH-HHH
Confidence 997544 47999999986 689999999999 544
No 3
>PRK11630 hypothetical protein; Provisional
Probab=100.00 E-value=2e-55 Score=372.89 Aligned_cols=188 Identities=23% Similarity=0.410 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcHHHHHhccC
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLL 103 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~~~l~~~~~ 103 (232)
.+.+++|+++|++||+|+|||||+|||+||++|++||+|||++|+|+.+|||++||+|++++.+|+.+++..++++++||
T Consensus 14 ~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~~~~~~~~~~~~l~~~~w 93 (206)
T PRK11630 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNT 93 (206)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHHcCCCCCCCeEEEECCHHHHHHHhcCCHHHHHHHHhcC
Confidence 45689999999999999999999999999999999999999999999999999999999999999988777889999999
Q ss_pred CCCeEEEEccCCCCcccc-ccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCC-CCChHHHHh-hhccccEE
Q 026839 104 PGPVTVVLSRGESSNLEK-SLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPS-SVSVKDFEN-LWERCACV 180 (232)
Q Consensus 104 PgplT~Il~~~~~~~l~~-~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~-~~~~~~~~~-~~~~vd~i 180 (232)
|||+|+|+++++ .+++ +++++.+|||||+|+|+++++|++.+|.||++||||+||+++ .++.+++.+ +.+.+|+|
T Consensus 94 PGplT~Il~a~~--~~p~~~~~~~~~tigiRip~~~~~~~L~~~~g~PL~~TSAN~sG~~~~~~~~~~i~~~~~~~vd~i 171 (206)
T PRK11630 94 PGNYTFILKGTK--EVPRRLLQEKRKTIGLRVPSNPIALALLEALGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLI 171 (206)
T ss_pred CCCeEEEEECCC--CCCHHHcCCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcCcCCCCCCCCCHHHHHHHhcCCceEE
Confidence 999999999865 4675 677788999999999999999999999999999999999876 477888754 55679999
Q ss_pred EcCcccCCCCCCCeEEEcccCCceEEEecCCChHHH
Q 026839 181 YDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEET 216 (232)
Q Consensus 181 vd~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~~~~ 216 (232)
+|+|.. .+ .+|||||+++ ++++|+|+|+++.+.
T Consensus 172 ldg~~~-~~-~pSTIvd~~~-~~~~ilR~G~~~~~~ 204 (206)
T PRK11630 172 IHGGYL-GQ-QPTTVIDLTD-DTPVVVREGVGDVKP 204 (206)
T ss_pred EeCCCC-CC-CCCEEEEccC-CceEEEecCCCchhh
Confidence 999875 34 7999999986 689999999998543
No 4
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=100.00 E-value=4.6e-54 Score=360.38 Aligned_cols=180 Identities=27% Similarity=0.400 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhc---cCCcHHHHHh
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAV---TDHLPHGLLD 100 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~---~~~~~~~l~~ 100 (232)
.+.+++|+++|++||||+|||||+|||+|++.|++||+|||++|+|+.+|||++|++|++++.+|+. +++..+++++
T Consensus 7 ~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~~~~~~~~~~~l~~ 86 (190)
T PRK10634 7 GDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDSMLTDAQRETIF 86 (190)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHHHHHHhcCCCHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999999999986 4566778999
Q ss_pred ccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChHHHHh-hhccccE
Q 026839 101 SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFEN-LWERCAC 179 (232)
Q Consensus 101 ~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~~~~~-~~~~vd~ 179 (232)
+|||||+|+|+++++ .++++++++.++||||||+|+++++|++.+|.||++||||+||++++++.+++.+ +.+++|
T Consensus 87 ~~wPGPlTlil~~~~--~~p~~l~~~~~tigvRiP~~~~~~~ll~~~g~Pl~~TSAN~sG~~~~~~~~~i~~~~~~~v~- 163 (190)
T PRK10634 87 SCWPGPVTFVFPAPA--TTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVEEVRAQFGAAFP- 163 (190)
T ss_pred HhCCCCEEEEEECCC--CCCHHHcCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcccCCCCCCCCHHHHHHHhCCCcE-
Confidence 999999999999864 5788999999999999999999999999999999999999999999999999765 546788
Q ss_pred EEcCcccCCCCCCCeEEEcccCCceEEEecC
Q 026839 180 VYDGGVLPSGRAGSTVVDLTRLGKFKILRPG 210 (232)
Q Consensus 180 ivd~g~~~~~~~~STIvd~~~~~~~~ilR~G 210 (232)
++|+|.... ..||||||+++ + +|+|+|
T Consensus 164 i~dg~~~~~-~~pSTIvd~~~-~--~ilR~G 190 (190)
T PRK10634 164 VVPGETGGR-LNPSEIRDALT-G--ELFRQG 190 (190)
T ss_pred EEcCCCCCC-CCCCeEEECCC-C--eEEeCC
Confidence 588886543 37999999985 3 899998
No 5
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=100.00 E-value=1.8e-53 Score=353.52 Aligned_cols=176 Identities=40% Similarity=0.694 Sum_probs=152.7
Q ss_pred HHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhc--cCCcHHHHHhccCCCCeEE
Q 026839 32 QALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAV--TDHLPHGLLDSLLPGPVTV 109 (232)
Q Consensus 32 ~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~--~~~~~~~l~~~~~PgplT~ 109 (232)
|+|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||++||+|++|+.+|+. +++...+++++|||||+|+
T Consensus 1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~~~~~~~~~~l~~~~wPgp~t~ 80 (179)
T PF01300_consen 1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYVDSPVSPKARRLLEKFWPGPLTL 80 (179)
T ss_dssp -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHEETT--HHHHHHHHHCHSSSEEE
T ss_pred CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHhhccccHHHHHHHHhccccCeeE
Confidence 58999999999999999999999999999999999999999999999999999999997 5666789999999999999
Q ss_pred EEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChHHHH-hhhccccEEEcCcccCC
Q 026839 110 VLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFE-NLWERCACVYDGGVLPS 188 (232)
Q Consensus 110 Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~~~~-~~~~~vd~ivd~g~~~~ 188 (232)
|+++++ ..++++++++.+|||||+|+|+++++|++.+|.||++||||+||+++..+.+++. ++.+.+|+|+|+|....
T Consensus 81 I~~~~~-~~l~~~~~~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sg~~~~~~~~~i~~~~~~~vd~iv~~~~~~~ 159 (179)
T PF01300_consen 81 ILPAKK-ENLPKYLTSKRGTIGVRIPDHPILRELLEALGGPLISTSANLSGEPPATDFEEIIERFGDKVDLIVDGGEIPS 159 (179)
T ss_dssp EEEEGT-TCSHHHHHTTTSEEEEECHCSHHHHHHHHHHTS-EEEEESSSTTSSCTTSHHHHHHHHTTTSSEEEECCHHSS
T ss_pred eecccc-ccCChhhcCCCCeEEEEecChHHHHHHHHhcCCceEecccccccCCCCCCHHHHHHHhccCceEEEECCCCCC
Confidence 999853 2488899999999999999999999999999999999999999999999999975 56678999999996544
Q ss_pred CCCCCeEEEcccCCceEEEecC
Q 026839 189 GRAGSTVVDLTRLGKFKILRPG 210 (232)
Q Consensus 189 ~~~~STIvd~~~~~~~~ilR~G 210 (232)
+ .+|||||+++ ++++|+|+|
T Consensus 160 ~-~~STIvd~~~-~~~~ilR~G 179 (179)
T PF01300_consen 160 G-QPSTIVDLTN-GKPKILREG 179 (179)
T ss_dssp S-S--EEEETTS-SSSEEEE--
T ss_pred C-CCCeEEEeeC-CceEEEeeC
Confidence 4 7999999996 789999998
No 6
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=100.00 E-value=7.2e-41 Score=326.55 Aligned_cols=199 Identities=26% Similarity=0.369 Sum_probs=172.1
Q ss_pred ceEeeccccccCCCCHHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhh
Q 026839 9 QVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88 (232)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~ 88 (232)
++|+.+..+++ ...+.+++|+++|++|+||++||||+|||+||++|++||+|||++|+|+ +|||+||++|++++++|
T Consensus 149 ~l~l~~~~g~~--~~~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~~K~Rp-~KPlavmv~d~~~~~~~ 225 (711)
T TIGR00143 149 QLNFVSRGGHA--EQDDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESAEQH 225 (711)
T ss_pred EEEEEeCCCCc--cchHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHHHhCCC-CCCEEEEECCHHHHHHH
Confidence 46666666552 2457899999999999999999999999999999999999999999998 69999999999999999
Q ss_pred hccCCcHHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChH
Q 026839 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVK 168 (232)
Q Consensus 89 ~~~~~~~~~l~~~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~ 168 (232)
+.+++...+++.+ ||+|++ ++++++...++..++++.+|||||+|+||+++.|++.+|.||++||||+||+|++++.+
T Consensus 226 ~~~~~~e~~lL~~-~~~Piv-ll~~~~~~~l~~~v~~~~~tiGvrlP~~pl~~~Ll~~~g~PLv~TSAN~SGep~~~~~~ 303 (711)
T TIGR00143 226 AELNNLECELLTS-PAAPIV-LLRKKPDIKLAPNIAPNLPTIGVMLPYTPLHHLLLQLLAFPLVMTSANLPGLPMAIDNA 303 (711)
T ss_pred hcCCHHHHHHHHc-CCCCEE-EEECCCCCCCChhhcCCCCEEEEEcCCCHHHHHHHHHcCCcEEECccCCCCCCCCCCHH
Confidence 9988777788854 789985 57775422367788899999999999999999999999999999999999999999988
Q ss_pred HH-HhhhccccEEEcCcccCCCCCCCeEEEcccCCceEEEecCCCh
Q 026839 169 DF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAK 213 (232)
Q Consensus 169 ~~-~~~~~~vd~ivd~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~ 213 (232)
++ +++.+.+|++++++....++.+||||+++. +++.|+|+|-..
T Consensus 304 e~~~~l~~~~D~~L~~~r~i~~~~dsSVV~~~~-~~~~ilR~~RG~ 348 (711)
T TIGR00143 304 EILDKLQGIADGFLVHNRRIVNRVDDSVVQHVA-GEILFLRRSRGF 348 (711)
T ss_pred HHHHHhcCCccEEEeCCCCcCCCCCCceEEEEC-CeeEEEeccCCC
Confidence 86 567778999887665334568999999986 689999999875
No 7
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.7e-32 Score=229.50 Aligned_cols=186 Identities=37% Similarity=0.573 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhcc--CCcHHHHHhcc
Q 026839 25 AHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVT--DHLPHGLLDSL 102 (232)
Q Consensus 25 ~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~--~~~~~~l~~~~ 102 (232)
..+..+.-+-+.++.+++||+|+||+++++.|..++.+||++|+||.++|+++.+.+..+++..... +.....|++.+
T Consensus 17 ~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~~i~~~~~~L~~~l 96 (261)
T KOG3051|consen 17 ALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAINIPSLYLPLASYL 96 (261)
T ss_pred hhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhhcchhhhhHHHhhc
Confidence 3344444556699999999999999999999999999999999999999999999999999886643 34556789999
Q ss_pred CCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCC-CChHHHHhhhccccEEE
Q 026839 103 LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSS-VSVKDFENLWERCACVY 181 (232)
Q Consensus 103 ~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~-~~~~~~~~~~~~vd~iv 181 (232)
||||+|++++..+. .+++.++++..++|+|+|+|+++++++..+|.|++.||||.|+.+.. +..+++++++.++++|+
T Consensus 97 ~PGPltlll~~~~~-~l~~~~~~~~~svAvRiP~~~~a~~li~~~~~Pla~tSAN~Ssr~s~tlai~~~~Dl~~~i~lil 175 (261)
T KOG3051|consen 97 WPGPLTLLLERADE-CLSKLTNPGLPSVAVRIPDHPVASALIPKLGVPLALTSANASSRPSPTLAIHVFADLQPKIPLIL 175 (261)
T ss_pred CCCceEEEeecchh-hccccccCCCcceeEEccCCHHHHHHHHHhCCCccccccccccCCCCcchhhhhhhhccchhhee
Confidence 99999999998652 58899999999999999999999999999999999999999999985 45667788999999999
Q ss_pred cCcccCCCCCCCeEEEcccCCceEEEecCCCh
Q 026839 182 DGGVLPSGRAGSTVVDLTRLGKFKILRPGSAK 213 (232)
Q Consensus 182 d~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~ 213 (232)
|+|.|..+ +.||+++... +++.|+|+|.+.
T Consensus 176 DgG~c~~g-~~~~~~~g~~-~p~~i~~pgG~~ 205 (261)
T KOG3051|consen 176 DGGACGSG-VESTVVEGST-DPVDILRPGGIT 205 (261)
T ss_pred cCcccccC-cCceeecccc-CcceeeccCCcc
Confidence 99998766 6899999876 578899988765
No 8
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-27 Score=227.70 Aligned_cols=198 Identities=27% Similarity=0.421 Sum_probs=161.2
Q ss_pred ceEeeccccccCCCCHHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhh
Q 026839 9 QVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88 (232)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~ 88 (232)
++|+.+++++++....+++.++++.|+.|+|++++.-++|+|+||++|.++|++|++.|+|| .|||++|+.|++++++|
T Consensus 182 ~~~l~~~~g~~~~~~~~ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR~rk~Rp-~KPFAvM~kdl~~i~~~ 260 (750)
T COG0068 182 HLFLVNHDGEAIAEANEAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVMAKDLETIEEF 260 (750)
T ss_pred CeEEEcCCCcchhhhhHHHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHHHhcCCC-CCCceeeeccHHHHHHh
Confidence 68999988876665556899999999999999999999999999999999999999999999 59999999999999999
Q ss_pred hccCCcHHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHH-hcCCeEEEeCCCCCCCCCCCCh
Q 026839 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR-GLESALALTSANLTGQPSSVSV 167 (232)
Q Consensus 89 ~~~~~~~~~l~~~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~-~~g~PL~~TSAN~sG~~~~~~~ 167 (232)
+.++...++++.+. -.|+ +++++++...++..+.++.++|||++|.+|+++.|++ ....|+++||||+||+|...+.
T Consensus 261 a~~~~~E~~lL~S~-~rPI-Vll~Kk~~~~~~~~iAP~l~~iGVMLPYtpLhhLLl~~~~~~~~VmTSaNl~g~Pm~~dN 338 (750)
T COG0068 261 AEVNDEEEELLTSP-SRPI-VLLKKKKVFLLESNIAPGLHTIGVMLPYTPLHHLLLQESLDIPYVMTSANLPGEPMAIDN 338 (750)
T ss_pred hccCHHHHHHhcCc-cCce-EEeccccccccccccCCCCCCcceeecCCchhhhhhhhccCceEEEecCCCCCCCcccCC
Confidence 99998888888763 2455 6778765444566688999999999999999999999 7788999999999999988776
Q ss_pred HH-HHhhhccccEEEcCcccCCCCCCCeEEEcccCCceEEEecC
Q 026839 168 KD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPG 210 (232)
Q Consensus 168 ~~-~~~~~~~vd~ivd~g~~~~~~~~STIvd~~~~~~~~ilR~G 210 (232)
++ ++.+.+-.|+.+.+.+...++..-+||.+.. +...++|+-
T Consensus 339 ~eal~kL~~IADyfL~HNR~I~~r~DDSVVrvV~-g~~~~iRrS 381 (750)
T COG0068 339 EEALEKLKGIADYFLLHNREIVNRCDDSVVRVVA-GRIAFIRRS 381 (750)
T ss_pred HHHHHHhhhhhheeeecccccccccCCcceeEeC-Cceeeeehh
Confidence 66 4556555676665543333344556666554 444555543
No 9
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.24 Score=47.72 Aligned_cols=145 Identities=20% Similarity=0.230 Sum_probs=97.7
Q ss_pred HHHHHHHHHhCCCeEE-EecCceEE--------EeccCCChHHHHHHHHHhC-CCCCCCcEEEECCHhhHhhhhccCCcH
Q 026839 26 HAEEAIQALKTGKVIA-VPTDTLYG--------FACDACSSEAVNRIYEIKG-RKHTSPLAICVGDVSDINRFAVTDHLP 95 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~-~PTdTvYg--------l~~~~~n~~av~rl~~iK~-R~~~Kpl~llv~s~~~l~~~~~~~~~~ 95 (232)
..+.+++.|.+|++|. +..--=|| +.+||.++...+||....+ |..=.||+--+- -+...+|.
T Consensus 379 l~~~va~~LadgkvVgwfqGRmEfGPRALGnRSILadPr~~~~kd~iN~~vK~Re~FrPFAPsiL-~E~~~~~f------ 451 (555)
T COG2192 379 LPDRVAELLADGKVVGWFQGRMEFGPRALGNRSILADPRDPGMKDKINLKVKFREGFRPFAPSIL-EEDVERYF------ 451 (555)
T ss_pred HHHHHHHHHhCCCeEEEEeeccccCccccCCceeecCCCChHHHHHHHHHhcccCccCCcCcchh-hhhhhHHh------
Confidence 5788999999999998 45544444 7789999999999998777 998899876543 23344443
Q ss_pred HHHHhccCCCC-eEEEEccCCCCc--cccc--cCCCCCeEEEEcCCcHHHHHHHHhc----CC-eEEEeCCCCCCCCCCC
Q 026839 96 HGLLDSLLPGP-VTVVLSRGESSN--LEKS--LNPGLESIGVRVPDSNFVRVIARGL----ES-ALALTSANLTGQPSSV 165 (232)
Q Consensus 96 ~~l~~~~~Pgp-lT~Il~~~~~~~--l~~~--l~~~~~tigiRiP~~~~~~~Ll~~~----g~-PL~~TSAN~sG~~~~~ 165 (232)
+.-.|-| .|++++.++... +|.. +.+....--|+=-.+|....||+++ |. -++-||-|..|||..-
T Consensus 452 ----e~~~~sPyM~~~~~~~~~~r~~lpaV~HvDgTaR~QtV~r~~nP~y~~ll~aF~~~TG~gvllNTSFN~~GEPIVc 527 (555)
T COG2192 452 ----ELPSPSPYMTLVFRVREEFRERLPAVTHVDGTARPQTVRRDANPRYYGLLRAFKERTGVGVLLNTSFNVHGEPIVC 527 (555)
T ss_pred ----hCCCCCCceeeeehhhHHHHhhCCceEeecCCccceeeccccChhHHHHHHHHHHhcCCcEEEecccccCCCceec
Confidence 2223556 566776654211 3322 2223344566777789999999865 43 4788999999999876
Q ss_pred ChHHHHhhh--ccccEEE
Q 026839 166 SVKDFENLW--ERCACVY 181 (232)
Q Consensus 166 ~~~~~~~~~--~~vd~iv 181 (232)
+.+|.-+.| ..+|..+
T Consensus 528 sp~DA~~~f~~t~~d~Lv 545 (555)
T COG2192 528 SPADAIRTFLSTGLDALV 545 (555)
T ss_pred CHHHHHHHHHhCCCcEEE
Confidence 777754333 3566554
No 10
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=63.74 E-value=19 Score=31.31 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHhCCCe--EEEecCceEE------EeccCCChHHHHHHHHHhCCCC
Q 026839 22 ATEAHAEEAIQALKTGKV--IAVPTDTLYG------FACDACSSEAVNRIYEIKGRKH 71 (232)
Q Consensus 22 ~~~~~i~~a~~~L~~G~v--i~~PTdTvYg------l~~~~~n~~av~rl~~iK~R~~ 71 (232)
.+..+++.+.+.|++|+. .+||--|-.- +.-.+++.++++-.+.+=++..
T Consensus 99 ~~~~alk~~~~lLk~G~~~i~IfPEGtR~r~~~~g~~~p~~Fd~~~~~~~~~La~~s~ 156 (235)
T cd07985 99 ANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDANGEWYPDPFDPSAVEMMRLLAQKSR 156 (235)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCccCCccchHHHHHHHHHHHhcC
Confidence 446789999999999985 5788755442 1223577777777777766664
No 11
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=60.01 E-value=20 Score=33.06 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCeEEE-ecCceE--------EEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccC
Q 026839 26 HAEEAIQALKTGKVIAV-PTDTLY--------GFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTD 92 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~~-PTdTvY--------gl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~ 92 (232)
..+++++.|.+|+||.. -.-.=| .|.+||.+.+..+||-+.|+|..=.||+=.+- .|++.+|....
T Consensus 253 ~~~~~A~lLa~gkiVgwfqGr~EfGPRALGnRSILAdP~~~~~~d~iN~~iKRE~fRPfAPsvl-~E~a~~~f~~~ 327 (360)
T PF02543_consen 253 LAEQVAELLADGKIVGWFQGRMEFGPRALGNRSILADPRSPDMKDRINRRIKREWFRPFAPSVL-EEDAEEYFELD 327 (360)
T ss_dssp HHHHHHHHHHTT--EEEE-SS-B-SSS--SSEEEEEESS-SSHHHHHHHTTS--TT---EEEEE-HHHHHHHBSS-
T ss_pred HHHHHHHHHHcCCEEEEEecCccccCccccccccccCCCChHHHHHHhhhcCccccCCcCcchh-HHHHHHhccCC
Confidence 57899999999999984 333333 47899999999999999999999999998875 77888886543
No 12
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=53.59 E-value=5.7 Score=35.35 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCC
Q 026839 124 NPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQP 162 (232)
Q Consensus 124 ~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~ 162 (232)
++..+++|+||+-..+ +-|.|++.||.++||.-
T Consensus 103 NG~rGt~GikI~L~~i------~~g~pviitsG~LSGCT 135 (281)
T PF05785_consen 103 NGARGTNGIKIALSDI------KEGKPVIITSGALSGCT 135 (281)
T ss_dssp -BTEEEEEEEEEGGG-------BTTB-EEEE---BSS-E
T ss_pred CCCCcceeEEEEHHHc------CCCCeEEEeCCccCCCE
Confidence 4567999999996653 35789999999999974
No 13
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=49.36 E-value=17 Score=33.01 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCeEEEecCceEE-------E------------eccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhh
Q 026839 28 EEAIQALKTGKVIAVPTDTLYG-------F------------ACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88 (232)
Q Consensus 28 ~~a~~~L~~G~vi~~PTdTvYg-------l------------~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~ 88 (232)
..+-+.|..|||..||.|+.|. . |..+++ +.++|.+++=+.-+....++++|.+++.++
T Consensus 234 aD~hr~L~~GGif~yP~~~~~~~gkLRllyEa~P~afi~EqAGG~as~--G~~~iLdi~p~~~hqR~p~~~GS~~eV~~~ 311 (315)
T cd00354 234 ADVHRILVRGGIFLYPADKKSPKGKLRLLYEANPMAFLVEQAGGKATD--GKERILDIVPTSLHQRVPVILGSKEEVERV 311 (315)
T ss_pred hHhHHhhhcCeEEEccCCCCCCCCcEeeeeeccHHHHHHHHhCCeecC--CCccccccCCCccccCCCeEEeCHHHHHHH
Confidence 3444567789999999999742 1 122233 347999999999999999999999998876
Q ss_pred h
Q 026839 89 A 89 (232)
Q Consensus 89 ~ 89 (232)
.
T Consensus 312 ~ 312 (315)
T cd00354 312 E 312 (315)
T ss_pred H
Confidence 3
No 14
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=47.95 E-value=44 Score=30.40 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=42.1
Q ss_pred cEEEECCHhhHhhhhccCCcHHHHHhc----------cCC-CCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHH
Q 026839 75 LAICVGDVSDINRFAVTDHLPHGLLDS----------LLP-GPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVI 143 (232)
Q Consensus 75 l~llv~s~~~l~~~~~~~~~~~~l~~~----------~~P-gplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~L 143 (232)
+..++.|.+++.++.. .+.-++|.++ +|. |.-.+.-.+++ ..-+. ...-+-||+|++|...+.
T Consensus 108 lPflf~d~~~~~~~~~-~~~g~~l~~~~e~~g~~~l~~~~~G~R~~t~~k~P-I~~pe----DlkGlkiRv~~s~~~~~~ 181 (332)
T COG1638 108 LPFLFRDEEHARRVLD-SEFGEELLKSLEAKGLKGLAFWENGFRQFTSNKRP-IKTPE----DLKGLKIRVPQSPLLLAM 181 (332)
T ss_pred CCeeeCCHHHHHHHHc-cHHHHHHHHHHHHcCCEEEEEecCceeeeecCCCC-CCChH----HhCCCeeecCCCHHHHHH
Confidence 5567899999998864 3444444443 344 33333322211 11111 234488999999999999
Q ss_pred HHhcC
Q 026839 144 ARGLE 148 (232)
Q Consensus 144 l~~~g 148 (232)
++.+|
T Consensus 182 ~~a~G 186 (332)
T COG1638 182 FKALG 186 (332)
T ss_pred HHHcC
Confidence 99998
No 15
>PLN02262 fructose-1,6-bisphosphatase
Probab=47.06 E-value=14 Score=33.82 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCeEEEecCceEE-----E--------------eccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhh
Q 026839 27 AEEAIQALKTGKVIAVPTDTLYG-----F--------------ACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87 (232)
Q Consensus 27 i~~a~~~L~~G~vi~~PTdTvYg-----l--------------~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~ 87 (232)
+..+-+.|..|||..||.|..|. | +..+++ +-+||.+++=+.-+....++++|.+++.+
T Consensus 252 VaD~hriL~~GGif~YP~d~~~~~GkLRllyEa~P~afi~EqAGG~As~--G~~~iLdi~p~~lHqR~pl~~GS~~eV~~ 329 (340)
T PLN02262 252 VADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLVEQAGGQAFT--GKQRALDLVPTKIHERSPIFLGSYDDVEE 329 (340)
T ss_pred hHHHHHHHhcCeEEeccCCCCCCCCcEEEEeecchHHHHHHHhCCcccc--CCccccccCCCccccCCCeEEeCHHHHHH
Confidence 34445667779999999998872 1 122233 35799999999999999999999998887
Q ss_pred hh
Q 026839 88 FA 89 (232)
Q Consensus 88 ~~ 89 (232)
+.
T Consensus 330 ~~ 331 (340)
T PLN02262 330 IK 331 (340)
T ss_pred HH
Confidence 64
No 16
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=44.27 E-value=23 Score=32.34 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCeEEEecCceEE-----E--------------eccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhh
Q 026839 27 AEEAIQALKTGKVIAVPTDTLYG-----F--------------ACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87 (232)
Q Consensus 27 i~~a~~~L~~G~vi~~PTdTvYg-----l--------------~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~ 87 (232)
+..+-+.|..|||..||.|..|. | |..+++ +-+||.+++=..-+....++++|.+++.+
T Consensus 241 VaD~hr~L~~GGif~YP~~~~~~~GkLRllyEa~P~afi~EqAGG~as~--G~~~iLd~~p~~lHqr~p~~~GS~~eV~~ 318 (327)
T PRK09293 241 VADVHRILLKGGIFLYPADEPYPNGKLRLLYEANPMAFLVEQAGGAASD--GKQRILDIEPESLHQRVPLFLGSKEEVER 318 (327)
T ss_pred hHHHhHHhhcCeEEEcCCCCCCCCCcEEEEeecchHHHHHHHhCCcccc--CCccccccCCCccccCCCeEEeCHHHHHH
Confidence 45566788999999999997763 1 122222 35899999999989999999999998887
Q ss_pred hh
Q 026839 88 FA 89 (232)
Q Consensus 88 ~~ 89 (232)
+.
T Consensus 319 ~~ 320 (327)
T PRK09293 319 VE 320 (327)
T ss_pred HH
Confidence 64
No 17
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=44.23 E-value=29 Score=32.61 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCeEEE-----------ecCceEEEeccCCChHHHHHHHHHhCCCC
Q 026839 24 EAHAEEAIQALKTGKVIAV-----------PTDTLYGFACDACSSEAVNRIYEIKGRKH 71 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~-----------PTdTvYgl~~~~~n~~av~rl~~iK~R~~ 71 (232)
...++++...|++||.++. |-+.-|. -++++.++|+-.+++=++..
T Consensus 280 ~kslk~~~~lL~~Gg~~iwIaPsGgRdR~d~~~g~~~--papFD~~svd~mR~l~~~s~ 336 (426)
T PLN02349 280 TRTLKEMALLLREGGQLIWIAPSGGRDRPDPLTGEWT--PAPFDPSAVDNMRRLTEKSK 336 (426)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCCCCCccCCCcc--CCCCChHHHHHHHHHHHhcC
Confidence 4678888899999998886 3233344 37899999999998877763
No 18
>PLN02542 fructose-1,6-bisphosphatase
Probab=43.56 E-value=17 Score=34.21 Aligned_cols=61 Identities=15% Similarity=0.318 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCeEEEecCceEE-----E--------------eccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhh
Q 026839 27 AEEAIQALKTGKVIAVPTDTLYG-----F--------------ACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87 (232)
Q Consensus 27 i~~a~~~L~~G~vi~~PTdTvYg-----l--------------~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~ 87 (232)
+..+-+.|-.|||+.||.|..|. | |..+++ +-+||.+++=..-+....++++|.+++.+
T Consensus 329 VaDvHRiLl~GGIF~YP~d~~~~~GKLRLLYEa~PmAfivEqAGG~Asd--G~~rILDi~P~~lHqR~Pl~~GS~~eV~~ 406 (412)
T PLN02542 329 VGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSD--GHQRILDIQPTEIHQRVPLYIGSVEEVEK 406 (412)
T ss_pred hHHHHHHhhcCeEEecCCCCCCCCCcEeEeeecchHHHHHHHhCCcccC--CCccccccCCCccccCCCeEEcCHHHHHH
Confidence 44455667779999999998773 1 222233 34799999999888999999999998887
Q ss_pred hh
Q 026839 88 FA 89 (232)
Q Consensus 88 ~~ 89 (232)
+.
T Consensus 407 ~~ 408 (412)
T PLN02542 407 LE 408 (412)
T ss_pred HH
Confidence 63
No 19
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=38.57 E-value=49 Score=25.50 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCeEEEec-CceEEEecc
Q 026839 24 EAHAEEAIQALKTGKVIAVPT-DTLYGFACD 53 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PT-dTvYgl~~~ 53 (232)
.+.+++|.+.|++..+|+-|+ |.+|-|.+.
T Consensus 75 ~~~l~~A~~~L~~~d~VlgPa~DGGy~LiG~ 105 (122)
T PF09837_consen 75 PDDLEQAFEALQRHDVVLGPAEDGGYYLIGL 105 (122)
T ss_dssp HHHHHHHHHHTTT-SEEEEEBTTSSEEEEEE
T ss_pred HHHHHHHHHHhccCCEEEeeccCCCEEEEec
Confidence 578999999999999999997 677777654
No 20
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=34.10 E-value=3.1e+02 Score=23.68 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEE---EECC-------HhhHhhhhccCCc
Q 026839 25 AHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAI---CVGD-------VSDINRFAVTDHL 94 (232)
Q Consensus 25 ~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~l---lv~s-------~~~l~~~~~~~~~ 94 (232)
++.+.+++.+++||+| |.+||-=..--|.+--|+.-+-..-||+.. |..+ +|.+..|+
T Consensus 26 kaa~lVAesi~n~g~i-------~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~----- 93 (243)
T COG4821 26 KAAKLVAESIMNDGRI-------YVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYA----- 93 (243)
T ss_pred HHHHHHHHHHhcCCEE-------EEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHhhhhHH-----
Confidence 4556667889999986 677775555556666666666666666431 2111 23333332
Q ss_pred HHHHHh--ccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcC-CeEEEeCCCCCCCCCCCChHHHH
Q 026839 95 PHGLLD--SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE-SALALTSANLTGQPSSVSVKDFE 171 (232)
Q Consensus 95 ~~~l~~--~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g-~PL~~TSAN~sG~~~~~~~~~~~ 171 (232)
+-+++ ..-||-+-+++... +.+.+.| -+.+..++-| .-|+.||.--|-....+.... .
T Consensus 94 -~~~l~~~~i~~~DVliviSnS-----------GrNpvpi------e~A~~~rekGa~vI~vTSl~ySq~~~SRh~SG-K 154 (243)
T COG4821 94 -KLFLHRLQIRPNDVLIVISNS-----------GRNPVPI------EVAEYAREKGAKVIAVTSLDYSQSQASRHKSG-K 154 (243)
T ss_pred -HHHHHHhcCCCCCEEEEEeCC-----------CCCCcch------HHHHHHHhcCCeEEEEehhhhhhhchhcccch-h
Confidence 22222 23588888877643 3333433 2334445555 468889988774443222111 2
Q ss_pred hhhccccEEEcCcc
Q 026839 172 NLWERCACVYDGGV 185 (232)
Q Consensus 172 ~~~~~vd~ivd~g~ 185 (232)
.+.+-+|.|+|.|.
T Consensus 155 ~Ly~~aDvVlDN~a 168 (243)
T COG4821 155 LLYEFADVVLDNGA 168 (243)
T ss_pred HHhhhcceeeeCCC
Confidence 35567888888874
No 21
>PRK09375 quinolinate synthetase; Provisional
Probab=34.09 E-value=77 Score=28.87 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhcc---CCcHHHHHhccCC
Q 026839 28 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVT---DHLPHGLLDSLLP 104 (232)
Q Consensus 28 ~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~---~~~~~~l~~~~~P 104 (232)
.+.+..|..++.|++|.. .-||...+--..+.|.++|++-.+-.....+.+-.+++.++.+ +..+.+.++++.+
T Consensus 80 aEtAkIL~p~k~VllP~~---~AgC~mAd~~~~~~i~~lk~~~p~a~vVaYvNssaeVKA~aD~~cTSSnAl~iv~~~~~ 156 (319)
T PRK09375 80 AETAKILSPEKTVLLPDL---EAGCSLADMCPAEEFRAFKEAHPDATVVTYVNTSAAVKARADIVCTSSNAVKIVEALPQ 156 (319)
T ss_pred hhhHHhcCCCCeEECCCC---CCCCcccccCCHHHHHHHHHHCCCCEEEEEeCCCHHHHHhCCeEEeCHHHHHHHhccCC
Confidence 455678888999999987 3456665555667788888866555566666777777777653 3344555666555
Q ss_pred CCeEEEEc
Q 026839 105 GPVTVVLS 112 (232)
Q Consensus 105 gplT~Il~ 112 (232)
+...+.+|
T Consensus 157 ~~~IlF~P 164 (319)
T PRK09375 157 GKKILFLP 164 (319)
T ss_pred CCeEEEeC
Confidence 66544444
No 22
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.74 E-value=42 Score=30.31 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=28.9
Q ss_pred cccCCCCHHHHHHHHHHHhCCCeEEEecCceEEEe
Q 026839 17 GLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFA 51 (232)
Q Consensus 17 ~~i~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgl~ 51 (232)
+.++|...+.+++.++.||+|+.|.+-.|--||-+
T Consensus 174 ~~~~~~~~~~ir~li~~Lk~G~~v~~lpDqd~~~~ 208 (308)
T COG1560 174 GRLLPRKGEGIRQLIKALKQGEAVGYLPDQDYGPG 208 (308)
T ss_pred CcccCCCchhHHHHHHHHhcCCeEEEecCcccCCC
Confidence 36667666889999999999999998888877743
No 23
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=33.54 E-value=56 Score=26.85 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCeEEEecCce
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTL 47 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTv 47 (232)
++.++++.++|+.||.+.+-||..
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCH
Confidence 567899999999999999988655
No 24
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=32.45 E-value=84 Score=28.64 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=62.8
Q ss_pred HHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhcc---CCcHHHHHhccC
Q 026839 27 AEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVT---DHLPHGLLDSLL 103 (232)
Q Consensus 27 i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~---~~~~~~l~~~~~ 103 (232)
..+.+.+|.-.+-|++|+- .-+|...+--..+.+.+.|++-.+-|....+.+-..++-++.+ +.-+-+.+++.+
T Consensus 81 MaETAkiLnPeK~VL~Pd~---~AgCsmA~~~~~~~~~~~~~~~P~~~vV~YvNtsA~vKA~~Di~cTSsNAvkvVe~~~ 157 (324)
T COG0379 81 MAETAKILNPEKTVLLPDL---EAGCSMADMITAEEVRAFKEKHPDAPVVTYVNTSAEVKAEADICCTSSNAVKVVESAL 157 (324)
T ss_pred hHhhHhhcCCCCeEecCCC---CCCCCcccCCCHHHHHHHHHHCCCCceEEEeeChHHHHhhcCeEEecchHHHHHHhcc
Confidence 3456778888888999983 4467766666778889999988899999999999998887753 344567777655
Q ss_pred CCCeEEEEcc
Q 026839 104 PGPVTVVLSR 113 (232)
Q Consensus 104 PgplT~Il~~ 113 (232)
++.-.+.+|.
T Consensus 158 ~~~~Iif~PD 167 (324)
T COG0379 158 DGDKILFLPD 167 (324)
T ss_pred CCCcEEEcCc
Confidence 6666666664
No 25
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=31.85 E-value=1.3e+02 Score=25.32 Aligned_cols=58 Identities=33% Similarity=0.335 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 27 AEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 27 i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
+++|++.|++|+.|++=.| +-.-+.+..-+.+.+..+.+- .+.++.+.-+.+.+.++.
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~-----~~Glicva~~~~~~~~L~ 64 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRH-----ASGLICVAMPEERADRLG 64 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHH-----BCSEEEEEEEHHHHHHTT
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHh-----cCCCeEecCCHHHHhHCC
Confidence 5789999999999998875 356666666677666655432 345555555666666653
No 26
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=30.53 E-value=57 Score=28.06 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCeEEEecCc
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDT 46 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdT 46 (232)
+.-++..+..|+.||.+-+.||-
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred HHHHHHHHHHccCCCEEEEEecC
Confidence 56789999999999999999985
No 27
>PF00316 FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR000146 This entry represents the fructose-1,6-bisphosphatase (FBPase) class 1 family. FBPase is a critical regulatory enzyme in gluconeogenesis that catalyses the removal of 1-phosphate from fructose 1,6-bis-phosphate to form fructose 6-phosphate [, ]. It is involved in many different metabolic pathways and found in most organisms. FBPase requires metal ions for catalysis (Mg2+ and Mn2+ being preferred) and the enzyme is potently inhibited by Li+. The fold of fructose-1,6-bisphosphatase was noted to be identical to that of inositol-1-phosphatase (IMPase) []. Inositol polyphosphate 1-phosphatase (IPPase), IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and participate in catalysis. This motif is also found in the distantly-related fungal, bacterial and yeast IMPase homologues. It has been suggested that these proteins define an ancient structurally conserved family involved in diverse metabolic pathways, including inositol signalling, gluconeogenesis, sulphate assimilation and possibly quinone metabolism []. This entry also includes sedoheptulose-1,7-bisphosphatase, which is a member of the FBPase class 1 family.; GO: 0042578 phosphoric ester hydrolase activity, 0005975 carbohydrate metabolic process; PDB: 2GQ1_A 2QVR_A 2Q8M_B 2OX3_A 2OWZ_A 3KC0_C 2WBB_A 1FTA_C 2VT5_F 2Y5L_F ....
Probab=30.51 E-value=31 Score=31.43 Aligned_cols=61 Identities=16% Similarity=0.295 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCeEEEecCceEEE-------------------eccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHh
Q 026839 26 HAEEAIQALKTGKVIAVPTDTLYGF-------------------ACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDIN 86 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~~PTdTvYgl-------------------~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~ 86 (232)
.+..+-+.|..|||..||.|.-|.- |..+++. -+||.+++=...+..-.++++|.+++.
T Consensus 239 mVaD~HRiL~~GGif~YP~d~~~~~GKLRlLYEa~PmAflvEqAGG~As~G--~~riLdi~p~~lHqR~pl~~GS~~eV~ 316 (324)
T PF00316_consen 239 MVADVHRILLKGGIFLYPADKKYPNGKLRLLYEANPMAFLVEQAGGKASDG--RERILDIVPESLHQRTPLFLGSAEEVE 316 (324)
T ss_dssp HHHHHHHHHHHTCEEEE-SBSSBTTCSSBTTTTHHHHHHHHHHTTCEEESS--SSBGGGS--SSTT-BE-EEEESHHHHH
T ss_pred cchhHHHHHhhCcEEECCCCCCCCCCceeEEEeccHHHHHHHHcCCEeccC--CcccccCCCCcccCCCCeEEcCHHHHH
Confidence 3555667788899999999986321 1112222 288999998888899999999999888
Q ss_pred hh
Q 026839 87 RF 88 (232)
Q Consensus 87 ~~ 88 (232)
++
T Consensus 317 ~~ 318 (324)
T PF00316_consen 317 EL 318 (324)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 28
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=29.64 E-value=1.3e+02 Score=25.44 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCeEEEecCce------EEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhh
Q 026839 26 HAEEAIQALKTGKVIAVPTDTL------YGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~~PTdTv------Ygl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~ 88 (232)
.+++|++.|++|+.|++=.|-. .-+++...+++.+..+.+- ...++.++-+.+.+.++
T Consensus 4 ~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~-----~~GliC~~~~~~~a~~L 67 (199)
T TIGR00506 4 RVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRH-----AGGLICVAITPDIADKL 67 (199)
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHh-----CCCCEEEECCHHHHhhC
Confidence 4899999999999999877532 4566666677666665542 35666667777777665
No 29
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=27.61 E-value=48 Score=29.02 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=20.1
Q ss_pred ccCCCCHHHHHHHHHHHhCCCeEEEecCc
Q 026839 18 LVRPATEAHAEEAIQALKTGKVIAVPTDT 46 (232)
Q Consensus 18 ~i~~~~~~~i~~a~~~L~~G~vi~~PTdT 46 (232)
++++.+ +.+.+++++|++|++|++-.|-
T Consensus 173 ~~i~~~-~~~~~~~~~Lk~g~~v~~l~Dq 200 (295)
T PF03279_consen 173 ELIPKG-EGIRELIRALKEGGIVGLLGDQ 200 (295)
T ss_pred eEecch-hhHHHHHHHhccCCEEEEEECC
Confidence 444544 3378888888888888887774
No 30
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=27.03 E-value=46 Score=30.19 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCeEEEecCceEEE-------------------eccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhH
Q 026839 25 AHAEEAIQALKTGKVIAVPTDTLYGF-------------------ACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDI 85 (232)
Q Consensus 25 ~~i~~a~~~L~~G~vi~~PTdTvYgl-------------------~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l 85 (232)
..+..+-+.|-.|||..||.|.-+.= +..++ +..+||.++.--..+..-.++++|-+++
T Consensus 238 SmVADvHRiL~~GGiF~YP~~~~~P~GKLRllYEanPmAflvEqAGG~At--dg~~rILDi~P~~lHqR~p~~~GS~~eV 315 (326)
T COG0158 238 SMVADVHRILLKGGIFLYPSDKRAPNGKLRLLYEANPMAFLVEQAGGKAT--DGKQRILDIVPEKLHQRVPLFLGSKEEV 315 (326)
T ss_pred HHHHHHHHHHHcCceEeccccCCCCCCceeeeeecchHHHHHHHhcCccc--CCCccccccCchhhccccceEeccHHHH
Confidence 34555667788899999999988721 11122 4567777777666666667777777776
Q ss_pred hhh
Q 026839 86 NRF 88 (232)
Q Consensus 86 ~~~ 88 (232)
.++
T Consensus 316 ~~~ 318 (326)
T COG0158 316 EKL 318 (326)
T ss_pred HHH
Confidence 655
No 31
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=26.31 E-value=51 Score=22.87 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEecC
Q 026839 21 PATEAHAEEAIQALKTGKVIAVPTD 45 (232)
Q Consensus 21 ~~~~~~i~~a~~~L~~G~vi~~PTd 45 (232)
|..-+..+++++.|++|.+|++--+
T Consensus 6 p~~~~D~~~i~~~l~~g~~Vivnl~ 30 (73)
T PF04472_consen 6 PKSFEDAREIVDALREGKIVIVNLE 30 (73)
T ss_dssp -SSGGGHHHHHHHHHTT--EEEE-T
T ss_pred eCCHHHHHHHHHHHHcCCEEEEECC
Confidence 4445678889999999999887543
No 32
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=25.54 E-value=61 Score=28.92 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHhCCCeEE
Q 026839 22 ATEAHAEEAIQALKTGKVIA 41 (232)
Q Consensus 22 ~~~~~i~~a~~~L~~G~vi~ 41 (232)
+.+..+++|..+||-||.+.
T Consensus 192 h~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 192 HIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CHHHHHHHHHHhcCCCcEEE
Confidence 34688999999999999543
No 33
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=23.53 E-value=59 Score=27.06 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHhCCCeEEEecCc
Q 026839 22 ATEAHAEEAIQALKTGKVIAVPTDT 46 (232)
Q Consensus 22 ~~~~~i~~a~~~L~~G~vi~~PTdT 46 (232)
.+++-++..+..|+.||.+-+.||.
T Consensus 111 ~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 111 VNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp TSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCchHHHHHHHHcCCCCEEEEEeCC
Confidence 3467899999999999999999985
No 34
>COG2371 UreE Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=4.1e+02 Score=21.58 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcHHHHHhccCCCCeEEEE
Q 026839 32 QALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVL 111 (232)
Q Consensus 32 ~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~~~l~~~~~PgplT~Il 111 (232)
..|+.|+++.+.++..+.+.+.+ .+=+.+-+.|.-++.+.| ..|=++.|| +.+
T Consensus 54 ~~L~~GD~L~~~d~~~i~V~a~~-----------------e~v~~I~~~t~~e~~~~a------~~LGNRH~p----a~~ 106 (155)
T COG2371 54 VLLRDGDVLLAEDGELIVVRAAP-----------------EDVLVIRAKTPLELAKAA------HHLGNRHLP----AQV 106 (155)
T ss_pred ccccCCCEEEeCCCcEEEEEecC-----------------CceEEEecCCHHHHHHHH------HHhcCcccc----cEe
Confidence 57888999999998888877644 233444455555555544 233345565 233
Q ss_pred ccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCC
Q 026839 112 SRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLT 159 (232)
Q Consensus 112 ~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~s 159 (232)
.. + .+++|.+..+..+++.+|.+.--.++-.+
T Consensus 107 ~~------------~----~~~v~~D~v~~~mL~~lG~~~~~~~~pf~ 138 (155)
T COG2371 107 EE------------D----ELRVPYDHVLRAMLEGLGVTVTRVELPFE 138 (155)
T ss_pred cC------------C----eEEecccHHHHHHHHHcCCceeeeeccCC
Confidence 22 1 78999999999999999987666555443
No 35
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=23.21 E-value=2e+02 Score=24.70 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 27 AEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 27 i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
+++|++.|++|+.|++=.| +-.-+.+..-+++.+..+.+ ....++.++-+.+.+.++.
T Consensus 3 ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~-----~a~GliCval~~~~a~~L~ 66 (219)
T PRK05773 3 FEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRK-----NAGGLICYATSNSEGKTLG 66 (219)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHH-----HCCceEEEeCCHHHHhhCC
Confidence 7899999999999998753 56667787778877766654 1356777777887777653
No 36
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=22.53 E-value=4.5e+02 Score=21.79 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEE
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICV 79 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv 79 (232)
.+.+.+++++..+||...+-.. +.+.++++++ .. ++|++.|.
T Consensus 22 ~~~~~~~a~a~~~~G~~~~~~~----------~~~~i~~i~~---~~-~~Pil~~~ 63 (221)
T PRK01130 22 PEIMAAMALAAVQGGAVGIRAN----------GVEDIKAIRA---VV-DVPIIGII 63 (221)
T ss_pred HHHHHHHHHHHHHCCCeEEEcC----------CHHHHHHHHH---hC-CCCEEEEE
Confidence 4567888888888887666543 2455555544 32 57877553
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=22.52 E-value=46 Score=22.77 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHhCCCeEEE
Q 026839 21 PATEAHAEEAIQALKTGKVIAV 42 (232)
Q Consensus 21 ~~~~~~i~~a~~~L~~G~vi~~ 42 (232)
+.-...++++.++||.||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 3335788999999999999875
No 38
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.45 E-value=2.1e+02 Score=24.82 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhh
Q 026839 25 AHAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88 (232)
Q Consensus 25 ~~i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~ 88 (232)
+.+++|++.|++|+.|++=.| +-.-+.+..-..+.+..+.+ + .+.++.++-+.+.+.++
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r--~---~~GliCva~~~~~a~~L 83 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIR--D---GSGIVCLCLPGETLDRL 83 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHH--H---CCccEEeeCCHHHHhhC
Confidence 459999999999999998765 45556666667766665543 1 35666666677766665
No 39
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=22.29 E-value=95 Score=31.97 Aligned_cols=85 Identities=9% Similarity=0.180 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCCCC-----cEEEECCHhhHhhhhccCCcHHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEE
Q 026839 58 EAVNRIYEIKGRKHTSP-----LAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGV 132 (232)
Q Consensus 58 ~av~rl~~iK~R~~~Kp-----l~llv~s~~~l~~~~~~~~~~~~l~~~~~PgplT~Il~~~~~~~l~~~l~~~~~tigi 132 (232)
..|+.|++++++-..+| =++++.+.+++..-+. +...+.++.. |..++|||-..+...+.+-+...-..+-|
T Consensus 100 ~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~--NaLLK~LEEp-P~~~~fIl~tt~~~kLl~TIrSRc~~v~F 176 (824)
T PRK07764 100 GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGF--NALLKIVEEP-PEHLKFIFATTEPDKVIGTIRSRTHHYPF 176 (824)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHH--HHHHHHHhCC-CCCeEEEEEeCChhhhhHHHHhheeEEEe
Confidence 34666766654432223 2566777777765431 2233455553 78888888654322222222223344667
Q ss_pred EcCCcHHHHHHHH
Q 026839 133 RVPDSNFVRVIAR 145 (232)
Q Consensus 133 RiP~~~~~~~Ll~ 145 (232)
|-+....+...|+
T Consensus 177 ~~l~~~~l~~~L~ 189 (824)
T PRK07764 177 RLVPPEVMRGYLE 189 (824)
T ss_pred eCCCHHHHHHHHH
Confidence 7666555554444
No 40
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.29 E-value=96 Score=27.59 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=28.5
Q ss_pred CeEEEEcCCcHHHHHHHHhcC--CeEEEeCCCCCCCC
Q 026839 128 ESIGVRVPDSNFVRVIARGLE--SALALTSANLTGQP 162 (232)
Q Consensus 128 ~tigiRiP~~~~~~~Ll~~~g--~PL~~TSAN~sG~~ 162 (232)
..+.|-+|+-.+++.+++++. .+.+--+||.||+-
T Consensus 156 ~dl~I~lP~l~~lk~~vdk~Knis~~l~~tan~~GeL 192 (284)
T KOG3999|consen 156 PDLSIQLPDLNQLKSFVDKMKNISDVLNVTANKSGEL 192 (284)
T ss_pred CCcceeCCCHHHHHHHHHHhhcccceEEEEEecCceE
Confidence 458899999999999999764 25666689999984
No 41
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=22.06 E-value=60 Score=23.84 Aligned_cols=25 Identities=4% Similarity=0.061 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHhCCCeEEEecCce
Q 026839 23 TEAHAEEAIQALKTGKVIAVPTDTL 47 (232)
Q Consensus 23 ~~~~i~~a~~~L~~G~vi~~PTdTv 47 (232)
+++++-.++..++.||++++-+...
T Consensus 24 ~pnal~a~~gtv~gGGllill~p~~ 48 (92)
T PF08351_consen 24 DPNALAALAGTVRGGGLLILLLPPW 48 (92)
T ss_dssp -HHHHHHHHTTB-TT-EEEEEES-G
T ss_pred CHHHHHHHhcceecCeEEEEEcCCH
Confidence 4688999999999999998766543
No 42
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.96 E-value=1.1e+02 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=5.7
Q ss_pred HHHHHHHHhCCCeE
Q 026839 27 AEEAIQALKTGKVI 40 (232)
Q Consensus 27 i~~a~~~L~~G~vi 40 (232)
+.++++.|++|+++
T Consensus 194 ~r~l~r~Lk~g~~v 207 (308)
T PRK06553 194 AFALAGVLERGGHV 207 (308)
T ss_pred HHHHHHHHHcCCeE
Confidence 34444444444433
No 43
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=20.83 E-value=71 Score=29.89 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCeEEEecCce
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTL 47 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTv 47 (232)
+..++++..+|+.||.+.+-||--
T Consensus 215 ~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 215 EDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred HHHHHHHHHHcCCCcEEEEEEECH
Confidence 567899999999999999999864
No 44
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=20.47 E-value=1.8e+02 Score=20.34 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHhCCCeEEEe-c-CceEEEeccCCC
Q 026839 22 ATEAHAEEAIQALKTGKVIAVP-T-DTLYGFACDACS 56 (232)
Q Consensus 22 ~~~~~i~~a~~~L~~G~vi~~P-T-dTvYgl~~~~~n 56 (232)
.++..++++.+.|++.|+|--- + ..+|-|+.+|.+
T Consensus 37 i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~~ 73 (83)
T PF02082_consen 37 ISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPPEE 73 (83)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-CCG
T ss_pred cCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCHHH
Confidence 3567899999999999987643 3 489999998743
No 45
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=20.22 E-value=2.3e+02 Score=28.23 Aligned_cols=77 Identities=9% Similarity=0.125 Sum_probs=44.8
Q ss_pred ccCCCCHHHHHHHHHHHhCCC-eEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcHH
Q 026839 18 LVRPATEAHAEEAIQALKTGK-VIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPH 96 (232)
Q Consensus 18 ~i~~~~~~~i~~a~~~L~~G~-vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~~ 96 (232)
....+....+++..+.+++|. -.+ ++|+...+. .-.+..+++- .++|+.+++++..++.++..
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~l-----l~Gl~gs~k-a~lia~l~~~----~~r~vLIVt~~~~~A~~l~~------ 75 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQT-----LLGVTGSGK-TFTMANVIAR----LQRPTLVLAHNKTLAAQLYS------ 75 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEE-----EEcCCCcHH-HHHHHHHHHH----hCCCEEEEECCHHHHHHHHH------
Confidence 433444577888888888773 221 445443321 1123344432 24789999999999887742
Q ss_pred HHHhccCCCCeEEEE
Q 026839 97 GLLDSLLPGPVTVVL 111 (232)
Q Consensus 97 ~l~~~~~PgplT~Il 111 (232)
-++.|+|.+-...+
T Consensus 76 -dL~~~~~~~~v~~f 89 (652)
T PRK05298 76 -EFKEFFPENAVEYF 89 (652)
T ss_pred -HHHHhcCCCeEEEe
Confidence 22445677645666
Done!