Query 026839
Match_columns 232
No_of_seqs 136 out of 1113
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 23:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k7j_A Protein YCIO, protein T 100.0 9.6E-54 3.3E-58 361.4 22.6 187 24-215 14-203 (206)
2 2eqa_A Hypothetical protein ST 100.0 1.8E-53 6.2E-58 384.0 22.1 194 24-221 14-210 (352)
3 1jcu_A Conserved protein MTH16 100.0 1.8E-53 6.1E-58 360.3 16.2 192 18-215 5-198 (208)
4 1hru_A YRDC gene product; prot 100.0 3.1E-51 1E-55 341.6 17.3 178 24-208 7-188 (188)
5 3vth_A Hydrogenase maturation 100.0 4.9E-45 1.7E-49 356.8 19.5 195 9-213 192-387 (761)
6 3l7v_A Putative uncharacterize 100.0 5.2E-46 1.8E-50 327.4 1.9 172 20-193 39-227 (295)
7 3ttc_A HYPF, transcriptional r 100.0 2.1E-42 7.3E-47 332.9 19.9 190 9-214 98-289 (657)
8 4g9i_A Hydrogenase maturation 100.0 2.1E-36 7.3E-41 296.7 17.0 198 9-212 187-386 (772)
9 3ven_A O-carbamoyltransferase 95.8 0.077 2.6E-06 50.5 11.6 147 25-183 397-566 (576)
10 1hq0_A CNF1, cytotoxic necroti 54.8 3.3 0.00011 35.7 0.7 33 124-162 116-148 (295)
11 2bh1_X General secretion pathw 38.7 92 0.0031 21.3 6.9 54 32-89 20-76 (96)
12 1tks_A 3,4-dihydroxy-2-butanon 38.2 69 0.0024 26.1 6.1 59 26-89 7-71 (204)
13 1g57_A DHBP synthase, 3,4-dihy 37.7 70 0.0024 26.3 6.1 61 24-89 13-79 (217)
14 1snn_A DHBP synthase, 3,4-dihy 37.4 71 0.0024 26.5 6.1 59 26-89 3-67 (227)
15 3mio_A DHBP synthase, 3,4-dihy 32.7 95 0.0032 25.3 6.1 59 26-89 6-70 (206)
16 3p3d_A Nucleoporin 53; structu 30.5 35 0.0012 26.0 2.9 40 27-70 72-111 (132)
17 3p04_A Uncharacterized BCR; SE 26.6 34 0.0012 24.0 2.1 26 20-45 11-36 (87)
18 2heo_A Z-DNA binding protein 1 25.1 84 0.0029 20.2 3.8 30 22-51 37-66 (67)
19 1jns_A Peptidyl-prolyl CIS-tra 21.8 90 0.0031 21.2 3.6 28 24-51 58-86 (92)
20 1iuq_A Glycerol-3-phosphate ac 21.0 80 0.0027 28.1 3.8 51 23-74 208-267 (367)
21 1k4i_A 3,4-dihydroxy-2-butanon 20.2 2.1E+02 0.0071 23.7 6.0 59 26-89 14-78 (233)
No 1
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00 E-value=9.6e-54 Score=361.44 Aligned_cols=187 Identities=24% Similarity=0.430 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcHHHHHhccC
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLL 103 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~~~l~~~~~ 103 (232)
++.+++|+++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||++||+|++++.+|+.+++..+++++++|
T Consensus 14 ~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~ll~~~~ 93 (206)
T 1k7j_A 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNT 93 (206)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHhcCCHHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred CCCeEEEEccCCCCcccc-ccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCC-CCChHHHH-hhhccccEE
Q 026839 104 PGPVTVVLSRGESSNLEK-SLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPS-SVSVKDFE-NLWERCACV 180 (232)
Q Consensus 104 PgplT~Il~~~~~~~l~~-~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~-~~~~~~~~-~~~~~vd~i 180 (232)
|||+|+|+++++ .+++ .++++.+|||||+|+||++++|++.+|.||++||||+||++. +++.+++. ++.+.+|+|
T Consensus 94 PGp~T~il~~~~--~~p~~~~~~~~~tvgvR~P~~p~~~~Ll~~~g~Pl~~TSAN~sG~~~p~~~~~~~~~~l~~~vd~i 171 (206)
T 1k7j_A 94 PGNYTFILKGTK--EVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLI 171 (206)
T ss_dssp SSSEEEEEEBCT--TSCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHHHHHTTTCSEE
T ss_pred CCCeEEEEECCC--CCCHHHcCCCCCeEEEEecCCHHHHHHHHHhCCceEECCcccCCCCCCCCCHHHHHHHhCCCCcEE
Confidence 999999999865 4777 567789999999999999999999999999999999999976 68888864 566789999
Q ss_pred EcCcccCCCCCCCeEEEcccCCceEEEecCCChHH
Q 026839 181 YDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEE 215 (232)
Q Consensus 181 vd~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~~~ 215 (232)
+|+|.+ +..+|||||+++ ++++|+|+|.++.+
T Consensus 172 ld~g~~--~~~~STVvd~~~-~~~~ilR~G~g~~~ 203 (206)
T 1k7j_A 172 IHGGYL--GQKPTTVIDLTD-DTPVVVREGVGDVK 203 (206)
T ss_dssp EECCCC--CSCCCEEEECGG-GCCEEEECCSSCSG
T ss_pred EeCCCC--CCCCCeEEEeeC-CcEEEEEeCCCChH
Confidence 999965 347999999986 67899999998753
No 2
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=100.00 E-value=1.8e-53 Score=383.99 Aligned_cols=194 Identities=27% Similarity=0.457 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh-ccCCcHHHHHhcc
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA-VTDHLPHGLLDSL 102 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~-~~~~~~~~l~~~~ 102 (232)
++.+++|+++|++||+|+|||||+|||+||++|++||+|||++|+||.+|||++||+|++++.+|+ .+++..++++++|
T Consensus 14 ~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~~~i~~~~~~Ll~~f 93 (352)
T 2eqa_A 14 IDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKVLEIAQIV 93 (352)
T ss_dssp HHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHHHhCCHHHHHHHHhC
Confidence 578999999999999999999999999999999999999999999999999999999999999999 7788889999999
Q ss_pred CCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChHHH-HhhhccccEEE
Q 026839 103 LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDF-ENLWERCACVY 181 (232)
Q Consensus 103 ~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~~~-~~~~~~vd~iv 181 (232)
||||+|+|+++++ .++++++++.+|||||+|+||++++|++.+|.||++||||+||++++++.+++ +++.+.+|+|+
T Consensus 94 wPGPlTlIlp~~~--~lp~~v~~g~~tvgvRvP~~p~~~~Ll~~~g~PL~atSAN~SG~p~~t~~~~v~~~l~~~vd~iL 171 (352)
T 2eqa_A 94 WPGPLTFVLKKTE--RVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDVII 171 (352)
T ss_dssp CSSSEEEEEEECT--TSCHHHHTTCSEEEEECCCCHHHHHHHHHHTSCEEECBSSCTTSCCCCSHHHHHHHHTTTSSEEE
T ss_pred CCCCEEEEEECCC--cCCHhHcCCCCeEEEEccCcHHHHHHHHHhCCcEEECccccCCCCCCCCHHHHHHHhcCcCCEEe
Confidence 9999999999865 58899999999999999999999999999999999999999999999999886 45777899999
Q ss_pred cCcccCCCCCCCeEEEcccCCceEEEecCCChHHHH-HHHh
Q 026839 182 DGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETI-AILE 221 (232)
Q Consensus 182 d~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~~~~~-~~l~ 221 (232)
|+|.+..+ .+|||||+++ ++++|+|+|.++.+.+ +++.
T Consensus 172 dgg~~~~g-~~STVvd~~~-~~~~iLR~G~i~~e~i~~~l~ 210 (352)
T 2eqa_A 172 DGGHTFFG-VESTIINVTV-EPPVLLRPGPFTIEELKKLFG 210 (352)
T ss_dssp ECCCCSSC-SCCEEEECSC-CC-EEEECCSSCHHHHHHHCT
T ss_pred cCCccCCC-CCCeeEECCC-CceEEEcCCCCCHHHHHHHhC
Confidence 99986444 6999999986 6789999999986554 4443
No 3
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=100.00 E-value=1.8e-53 Score=360.25 Aligned_cols=192 Identities=34% Similarity=0.568 Sum_probs=173.9
Q ss_pred ccCCCC--HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcH
Q 026839 18 LVRPAT--EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLP 95 (232)
Q Consensus 18 ~i~~~~--~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~ 95 (232)
++++.+ .+.+++|+++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||++||+|++++.+|+.+++..
T Consensus 5 ~~~~~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~~~~~~~~ 84 (208)
T 1jcu_A 5 KITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRPSGDA 84 (208)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEECCHHH
T ss_pred EecCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhcCCHHH
Confidence 344433 467999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChHHHHhhhc
Q 026839 96 HGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWE 175 (232)
Q Consensus 96 ~~l~~~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~~~~~~~~ 175 (232)
++++++|||||+|+|+++++ .++++++++.+|||||+|+||++++|++.+ ||++||||+||++++++.+++.+.++
T Consensus 85 ~~ll~~~wPgp~T~il~~~~--~~p~~v~~~~~tvgvR~P~~p~~~~Ll~~~--Pl~~TSAN~sG~p~~~~~~~~~~~l~ 160 (208)
T 1jcu_A 85 MELMERILPGPYTVVLERNE--LIPDVITGGSSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLD 160 (208)
T ss_dssp HHHHHHSCSSSEEEEEEECS--CCCHHHHTTTTEEEEECCSCHHHHHHHHHS--CEEEEECCSSSCCSCSCHHHHHHHSS
T ss_pred HHHHHhcCCCCeEEEEeCCc--cCCHhhcCCCCeEEEEeCCCHHHHHHHHHh--HHHccCcccCCCCCCCCHHHHHHHhC
Confidence 89999999999999999865 588899999999999999999999999999 99999999999999999999754338
Q ss_pred cccEEEcCcccCCCCCCCeEEEcccCCceEEEecCCChHH
Q 026839 176 RCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEE 215 (232)
Q Consensus 176 ~vd~ivd~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~~~ 215 (232)
.+|+|+|+|.+.. ..+|||||+++ ++++|+|+|.++.+
T Consensus 161 ~vd~ild~g~~~~-~~~STVvd~~~-~~~~ilR~G~~~~~ 198 (208)
T 1jcu_A 161 AVDLVLDAGDCLD-MEPSTVIDLTV-NPPRVLRRGKGPLD 198 (208)
T ss_dssp SSEECCSSCCCSC-SCCCEEECCCS-SSCCEEECCCSSCC
T ss_pred cCCEEEeCCCccC-CCCCEEEEeeC-CcEEEEecCCCCHH
Confidence 8999999997543 46999999986 67899999998763
No 4
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00 E-value=3.1e-51 Score=341.60 Aligned_cols=178 Identities=27% Similarity=0.391 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhc---cCCcHHHHHh
Q 026839 24 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAV---TDHLPHGLLD 100 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~---~~~~~~~l~~ 100 (232)
.+.+++|+++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||++||+|++++.+|+. +++..+++++
T Consensus 7 ~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T 1hru_A 7 RDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETIF 86 (188)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHHhhcCCCHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999997 6767778999
Q ss_pred ccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChHHHH-hhhccccE
Q 026839 101 SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFE-NLWERCAC 179 (232)
Q Consensus 101 ~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~~~~-~~~~~vd~ 179 (232)
++||||+|+|+++++ .++++++++.+|||||+|+||+++.|++.+|.||++||||+||+|++++.+++. ++.+.+ +
T Consensus 87 ~~~pgP~tlil~~~~--~~p~~v~~~~~tvgvR~p~~p~~~~Ll~~~g~Pl~~TSaN~sG~p~~~~~~~~~~~l~~~v-~ 163 (188)
T 1hru_A 87 SRWPGPVTFVFPAPA--TTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAF-P 163 (188)
T ss_dssp TTCSSSEEEEEECCT--TSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHHHHHCTTS-C
T ss_pred hCCCCCEEEEEECCC--CCCHhHcCCCCeEEEEcCCCHHHHHHHHHhCCeEEEccCCCCCCCCCCCHHHHHHHhCCCE-E
Confidence 999999999999864 588899999999999999999999999999999999999999999999999975 455678 8
Q ss_pred EEcCcccCCCCCCCeEEEcccCCceEEEe
Q 026839 180 VYDGGVLPSGRAGSTVVDLTRLGKFKILR 208 (232)
Q Consensus 180 ivd~g~~~~~~~~STIvd~~~~~~~~ilR 208 (232)
|+|+|.+..+ .+|||||+++ + +|+|
T Consensus 164 ildgg~~~~~-~~STIvd~~~-~--~ilR 188 (188)
T 1hru_A 164 VVPGETGGRL-NPSEIRDALT-G--ELFR 188 (188)
T ss_dssp BCCCCCCSSC-CCCEEEETTT-S--SBCC
T ss_pred EEeCCCCCCC-CCCeEEECcC-C--EEEC
Confidence 8999876434 6999999985 3 6666
No 5
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=100.00 E-value=4.9e-45 Score=356.76 Aligned_cols=195 Identities=21% Similarity=0.317 Sum_probs=173.8
Q ss_pred ceEeeccccccCCCCHHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhh
Q 026839 9 QVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88 (232)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~ 88 (232)
++|+.+..+ ..+.+++|+++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+||++|++++.+|
T Consensus 192 ~l~l~~~~~-----~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~ 265 (761)
T 3vth_A 192 SLSFVGEGC-----FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKY 265 (761)
T ss_dssp CEEEESSCC-----CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHH
T ss_pred eeEEeCCCC-----chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHH
Confidence 567766554 345799999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hccCCcHHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCChH
Q 026839 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVK 168 (232)
Q Consensus 89 ~~~~~~~~~l~~~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~~ 168 (232)
+.+++..++++++ ||||+| |+++++. .+++.++++.+|||||+|+||+++.|++.+|.||++||||+||+|++++.+
T Consensus 266 ~~v~~~~~~ll~~-~pgPit-lL~~~~~-~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p~~~~~~ 342 (761)
T 3vth_A 266 CIVSPEEERLLLS-QRRPIV-LLKKKGE-KLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEPICKDNE 342 (761)
T ss_dssp BCCCHHHHHHHHS-TTCCEE-EEEBCSS-CCCTTSSTTCSEEEEECCCSHHHHHHHHHCSSCEECEESSSTTSCCCCSHH
T ss_pred ccCCHHHHHHHhC-CCCCEE-EEECCCC-CCCHhHcCCCCeEEEEecCCHHHHHHHHHcCCeEEEcCcccCCCCCCCCHH
Confidence 9988888899988 999999 5777542 688899999999999999999999999999999999999999999999998
Q ss_pred HH-HhhhccccEEEcCcccCCCCCCCeEEEcccCCceEEEecCCCh
Q 026839 169 DF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAK 213 (232)
Q Consensus 169 ~~-~~~~~~vd~ivd~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~ 213 (232)
++ +++.+.+|+|+|+|.....+.+|||||+++ ++++|+|+|..+
T Consensus 343 e~~~~l~~~vD~iLd~~r~i~~~~~STVvd~~~-~~~~iLR~grG~ 387 (761)
T 3vth_A 343 EALEKLKDIADVFLLNNRDIVNRIDDSVTSFNA-GAERIIRRARGY 387 (761)
T ss_dssp HHHHHTTTTCSEEEEESSCCSSCCCCCEECEET-TEECCSBCCTTT
T ss_pred HHHHHccCcCCEEEECCCCccCCCCCeEEEEEC-CcEEEEecCCCC
Confidence 86 457788999999874223457999999986 689999999865
No 6
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=100.00 E-value=5.2e-46 Score=327.44 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=145.6
Q ss_pred CCCCHHHHHHHHHHHh-CCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhhccCCcHHHH
Q 026839 20 RPATEAHAEEAIQALK-TGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGL 98 (232)
Q Consensus 20 ~~~~~~~i~~a~~~L~-~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~~~~l 98 (232)
+..+.+.+++|+++|+ +||||+|||||+|||+| +|++||+|||++|+|+.+|||++||+|++++.+|+.+++..+++
T Consensus 39 ~~~~~~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~~v~~~~~~L 116 (295)
T 3l7v_A 39 IHWDGNLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQLTPEIDAF 116 (295)
T ss_dssp EECCSSCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBCCCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHH
Confidence 3444567899999999 99999999999999999 89999999999999999999999999999999999988888899
Q ss_pred HhccCCCCeEE--EEccCCC--Cccc-------cccCCCCCe----EEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCC
Q 026839 99 LDSLLPGPVTV--VLSRGES--SNLE-------KSLNPGLES----IGVRVPDSNFVRVIARGLESALALTSANLTGQPS 163 (232)
Q Consensus 99 ~~~~~PgplT~--Il~~~~~--~~l~-------~~l~~~~~t----igiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~ 163 (232)
+++|||||+|+ |+++++. ..++ ..++++.+| ||||+|+||+++.|++.+|.||++||||+||+++
T Consensus 117 l~~~wPGPiTlT~ILp~k~~a~~~lp~~~~~~~~~v~~g~~t~~~~VGVRvP~~pl~~~Ll~~~g~PLvaTSAN~SGep~ 196 (295)
T 3l7v_A 117 YQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGKGN 196 (295)
T ss_dssp HHHHHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHHHSCTTSEEEEEESSCHHHHHHHHHHHHHHCCCCEEEECC-----C
T ss_pred HHhcCCCCceeeEEEECCccccccCCcccccchhhccCCCCCcceeeEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCC
Confidence 99999999965 9996431 1244 567888999 9999999999999999999999999999999999
Q ss_pred CCChHHH-HhhhccccEEEcCcccCCCCCCC
Q 026839 164 SVSVKDF-ENLWERCACVYDGGVLPSGRAGS 193 (232)
Q Consensus 164 ~~~~~~~-~~~~~~vd~ivd~g~~~~~~~~S 193 (232)
+++.+++ +++.+.+|+|+|+|.+..+.+||
T Consensus 197 ~~~~ee~~~~L~~~vD~iLd~G~~~~~~~Ps 227 (295)
T 3l7v_A 197 RGKVEGIGERIESMVDLVIEADDYVASIQPD 227 (295)
T ss_dssp TTCGGGSCHHHHHHSSEEEECHHHHHHTCTT
T ss_pred CCCHHHHHHHhcCcCcEEEeCCCccCCCCCC
Confidence 9999886 56778899999998643333343
No 7
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=100.00 E-value=2.1e-42 Score=332.93 Aligned_cols=190 Identities=25% Similarity=0.331 Sum_probs=164.9
Q ss_pred ce-EeeccccccCCCCHHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhh
Q 026839 9 QV-SVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87 (232)
Q Consensus 9 ~~-~~~~~~~~i~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~ 87 (232)
++ |+.+..+ ....+.+++|+++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+|||+|++
T Consensus 98 ~l~~l~~~~~---~~~~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~---- 169 (657)
T 3ttc_A 98 YLEWVSHGEH---AEQEAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVAD---- 169 (657)
T ss_dssp CEEEEETTEE---EEHHHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCT----
T ss_pred cceEeecCCC---CcchHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChH----
Confidence 45 6655544 12357899999999999999999999999999999999999999999999 799999999998
Q ss_pred hhccCCcHHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCCCCCCh
Q 026839 88 FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSV 167 (232)
Q Consensus 88 ~~~~~~~~~~l~~~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~~~~~~ 167 (232)
.+++..++++++ ||||+|+|+++++ ..+++.++++.+|||||+|+||+++.|++.+|.||++||||+||+|++++.
T Consensus 170 --~v~~~~~~ll~~-~pgPiTli~~~~~-~~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p~~~~~ 245 (657)
T 3ttc_A 170 --GLPDAARQLLTT-PAAPIVLVDKKYV-PELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 245 (657)
T ss_dssp --TSCHHHHHHHTS-TTCCEEEEEGGGC-TTSCTTSSTTCSEEEEECCCSHHHHHHHHHHCSCEEEEECCCTTSCCCCSH
T ss_pred --HCCHHHHHHHhc-CCCCEEEEEeCCc-CCCCHHHCCCCCceEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCCCCCH
Confidence 245566789988 9999999988753 248889999999999999999999999999999999999999999999999
Q ss_pred HHH-HhhhccccEEEcCcccCCCCCCCeEEEcccCCceEEEecCCChH
Q 026839 168 KDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKE 214 (232)
Q Consensus 168 ~~~-~~~~~~vd~ivd~g~~~~~~~~STIvd~~~~~~~~ilR~G~~~~ 214 (232)
+++ +++.+.+|+|+|+|.....+.+||||+ + +++|+|+|.++.
T Consensus 246 ~e~~~~l~~~vD~iLd~gr~i~~~~dsSVV~---~-~~~ilRrgrG~~ 289 (657)
T 3ttc_A 246 EQALEDLQGIADGFLIHNRDIVQRMDDSVVR---E-SGEMLRRSRGYV 289 (657)
T ss_dssp HHHHHHHTTTCSEEEEESSCCCSCCCCCEEE---T-TCCEEECCTTTT
T ss_pred HHHHHHhcCCCeEEEECCCcccCCCCCcEEE---C-CCeEEEcCCCCC
Confidence 887 456678999999985444568999999 2 579999999763
No 8
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=100.00 E-value=2.1e-36 Score=296.74 Aligned_cols=198 Identities=22% Similarity=0.268 Sum_probs=172.0
Q ss_pred ceEeeccccccCCCCHHHHHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhh
Q 026839 9 QVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 88 (232)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~ 88 (232)
++|+.+..++... .+.+++|+++|++|+||++||+|+|||+|||+|++||+|||++|+|| +|||+||++|++++++|
T Consensus 187 ~l~l~~~~~~~~~--~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~ 263 (772)
T 4g9i_A 187 SYRLYTSDGQEIY--GDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSF 263 (772)
T ss_dssp CEEEESSSCBCCT--THHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHH
T ss_pred eEEEEcCCCCeec--hHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHH
Confidence 6788888776544 46899999999999999999999999999999999999999999999 69999999999999999
Q ss_pred hccCCcHHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhcCC-eEEEeCCCCCCCCCCCCh
Q 026839 89 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES-ALALTSANLTGQPSSVSV 167 (232)
Q Consensus 89 ~~~~~~~~~l~~~~~PgplT~Il~~~~~~~l~~~l~~~~~tigiRiP~~~~~~~Ll~~~g~-PL~~TSAN~sG~~~~~~~ 167 (232)
+.+++...+++.+.|+.++++ ++++...+++.+.++.+|||||+|++|+++.|++.+|. ||++||||+||+|.+++.
T Consensus 264 ~~~~~~e~~~L~s~~~Pivll--~~~~~~~l~~~vap~~~~~Gv~lP~~pl~~lL~~~~~~~~lv~tSaN~sg~P~~~~~ 341 (772)
T 4g9i_A 264 AYVSPEEEEELTSYRRPIITL--RKKEPFPLPENLAPGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANYPGMPMVKDN 341 (772)
T ss_dssp SCCCHHHHHHHSSTTCCEEEE--ECCSSCCSCTTSCSSCSEEEEECCCSTHHHHHHHSSSSCCCCCEESSCTTSCCBCSH
T ss_pred hccCchhhhhhccCCCCCEEE--ECCCCCCCChhHCCCCCeEEEEecCCHHHHHHHHhcCCCEEEECcCCCCCCCCccCH
Confidence 999888889998877655544 44444568999999999999999999999999999997 579999999999999998
Q ss_pred HHH-HhhhccccEEEcCcccCCCCCCCeEEEcccCCceEEEecCCC
Q 026839 168 KDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSA 212 (232)
Q Consensus 168 ~~~-~~~~~~vd~ivd~g~~~~~~~~STIvd~~~~~~~~ilR~G~~ 212 (232)
+++ +++.+.+|+++|++.-...+...+||++.. +.+.+||.+-.
T Consensus 342 ~~a~~~L~~~~D~~L~h~R~I~~~~DDSvv~~~~-~~~~~lRr~RG 386 (772)
T 4g9i_A 342 ERAFEELKDVADYFLLHNRKILNRADDSVIRFVD-GKRAVIRRSRG 386 (772)
T ss_dssp HHHHHHHTTTCSBEEEESSCCCSCCCCCEECCCS-SSCCBSCCCTT
T ss_pred HHHHHhhcCcccEEEECCCCccCccCCceEEEEC-CeEEEEecCCC
Confidence 885 678888999999886555666778999886 57788888664
No 9
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=95.80 E-value=0.077 Score=50.45 Aligned_cols=147 Identities=18% Similarity=0.085 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhCCCeEE-EecCceE--------EEeccCCChHHHHHHH-HHhCCCCCCCcEEEECCHhhHhhhhccCCc
Q 026839 25 AHAEEAIQALKTGKVIA-VPTDTLY--------GFACDACSSEAVNRIY-EIKGRKHTSPLAICVGDVSDINRFAVTDHL 94 (232)
Q Consensus 25 ~~i~~a~~~L~~G~vi~-~PTdTvY--------gl~~~~~n~~av~rl~-~iK~R~~~Kpl~llv~s~~~l~~~~~~~~~ 94 (232)
+..+++++.|.+|+||. +-.-.=| .|.+||.+++..+||. ++|+|..=.||+=.|- .|.+.+|...+.
T Consensus 397 ~~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~vl-~e~a~~~f~~~~- 474 (576)
T 3ven_A 397 NLEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLEVDA- 474 (576)
T ss_dssp THHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEEE-HHHHHHHBSSCS-
T ss_pred cHHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhhh-HHHHHHHcCCCC-
Confidence 34688999999999997 4444334 4789999999999999 8999999999987664 677788754321
Q ss_pred HHHHHhccCCCCeE-EEEccCC--CCccccccCCCCCe---EEEEcCCcHHHHHHHHhc----CCe-EEEeCCCCCCCCC
Q 026839 95 PHGLLDSLLPGPVT-VVLSRGE--SSNLEKSLNPGLES---IGVRVPDSNFVRVIARGL----ESA-LALTSANLTGQPS 163 (232)
Q Consensus 95 ~~~l~~~~~PgplT-~Il~~~~--~~~l~~~l~~~~~t---igiRiP~~~~~~~Ll~~~----g~P-L~~TSAN~sG~~~ 163 (232)
|.|+- ++++.++ ...+|.... -.+| --|.=-.+|...+||+++ |.| |+-||-|..|||.
T Consensus 475 ---------~spyMl~~~~v~~~~r~~ipav~H-vDgTaR~QtV~~~~np~~~~ll~~f~~~TG~pvllNTSfN~~GePi 544 (576)
T 3ven_A 475 ---------DFPYMIMTTKVRAAYAERLPSVVH-EDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPI 544 (576)
T ss_dssp ---------CCCSSCSCEEBCGGGTTTCTTTSC-TTSEECCEEECTTTCHHHHHHHHHHHHHHSSCEEEEEESSCTTSCC
T ss_pred ---------CCCceeEeeecCHhHHhhCCcEEe-ccCCccceEECCccCHHHHHHHHHHHHHhCCeEEEECCCCCCCCCC
Confidence 22221 2223221 123443333 1233 233445688888888865 556 6789999999998
Q ss_pred CCChHHHHhhh--ccccEEEcC
Q 026839 164 SVSVKDFENLW--ERCACVYDG 183 (232)
Q Consensus 164 ~~~~~~~~~~~--~~vd~ivd~ 183 (232)
..+.+|.-+.| ..+|..+-+
T Consensus 545 V~tp~dA~~~f~~~~lD~Lv~~ 566 (576)
T 3ven_A 545 VSSPADALLTFSRLPIDALAVG 566 (576)
T ss_dssp CCSHHHHHHHHHHTTCSEEEET
T ss_pred CCCHHHHHHHHHhCCCCEEEEC
Confidence 88888865444 356765533
No 10
>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A
Probab=54.81 E-value=3.3 Score=35.74 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCCCCeEEEEcCCcHHHHHHHHhcCCeEEEeCCCCCCCC
Q 026839 124 NPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQP 162 (232)
Q Consensus 124 ~~~~~tigiRiP~~~~~~~Ll~~~g~PL~~TSAN~sG~~ 162 (232)
++..+++|+||+-..+ +-|.|++.||.++||.-
T Consensus 116 NG~rGa~GikI~L~~I------~~g~pviitsG~LSGCT 148 (295)
T 1hq0_A 116 NSARGANGIKIALEEV------QEGKPVIITSGNLSGCT 148 (295)
T ss_dssp CBTEEEEEEEEEGGGC------BTTBCEEEECCCBSSCE
T ss_pred CCCCcceeEEEEHHHc------CCCCeEEEeCCcccCcE
Confidence 4567899999986643 35889999999999974
No 11
>2bh1_X General secretion pathway protein E,; transport protein, type II secretion, EPS, transmembrane, transport, ATP-binding; 2.4A {Vibrio cholerae} SCOP: d.52.10.1
Probab=38.75 E-value=92 Score=21.27 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=40.3
Q ss_pred HHHhCCCeEEEecC--c-eEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 32 QALKTGKVIAVPTD--T-LYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 32 ~~L~~G~vi~~PTd--T-vYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
..+++-+++.+.-+ + .+-..+||+|..+++.|...-+ +++.+.+.+.+++.++.
T Consensus 20 ~~arr~~vlPl~~~~~~~l~va~~dP~~~~aldel~~~~g----~~v~~~va~~~~i~~~i 76 (96)
T 2bh1_X 20 SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVK----HAFQLIELSQAEFESKL 76 (96)
T ss_dssp HHHHHHTEEEEECSSSCCEEEEECSSCCHHHHHHHHHHHC----SCEEEEECCHHHHHHHH
T ss_pred HHHHHCCEEEEEECCCcEEEEEEcCCCCHHHHHHHHHHhC----CCceEEEcCHHHHHHHH
Confidence 45566788876554 4 5666799999999999987765 56777788888887653
No 12
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=38.16 E-value=69 Score=26.08 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 26 HAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
.+++|++.|++|+.|++=.| +-.-+++....++.+..+.+- ...++.++-+-+.+.++.
T Consensus 7 ~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~-----~~GliC~~lt~~~~~~L~ 71 (204)
T 1tks_A 7 PIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRY-----SSGYVCVPLSEERANQLE 71 (204)
T ss_dssp CHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHT-----BCSCCEEEEEHHHHHHTT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHHHh-----CCCcEEEEcCHHHHhhCC
Confidence 38999999999999999876 667788888888888766542 345555555677776664
No 13
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=37.72 E-value=70 Score=26.28 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 24 EAHAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
.+.+++|++.|++|+.|++=.| +-.-+++....++.+..+.+-- ..++.++-+-+.+.++.
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~~~~-----~GliCl~lt~~ra~~L~ 79 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHG-----SGIVCLCITEDRRKQLD 79 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHB-----CSCCEEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHHHhC-----CCceEEECCHHHHhhCC
Confidence 4679999999999999999876 5577778888888887774322 34444455666666653
No 14
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=37.38 E-value=71 Score=26.45 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 26 HAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
.+++|++.|++|+.|++=.| +-.-+++..-.++.+..+.+- ...++.++-+-+.+.++.
T Consensus 3 ~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~~~-----~~GliC~~l~~e~~~~L~ 67 (227)
T 1snn_A 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKD-----AGGLICTALHPDICNKLG 67 (227)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHH-----TEEEEEEEECHHHHHHHT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHc-----CCCcEEEEcCHHHHhhCC
Confidence 48999999999999999776 668888888889888877542 356777777888877775
No 15
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=32.74 E-value=95 Score=25.29 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 26 HAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
.+++|++.|++|+.|++=.| +-.-+++..-.++.+..+.+- ...++.++-+-+.+.++-
T Consensus 6 ~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~-----~~GliC~~lt~~~a~~L~ 70 (206)
T 3mio_A 6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRY-----TSGYLCVPLDGAICDRLG 70 (206)
T ss_dssp CHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHH-----BCSCCEEEECHHHHHHTT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHh-----CCCceEEECCHHHHhhCC
Confidence 38999999999999999775 566777888888887776553 234555555666666653
No 16
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=30.49 E-value=35 Score=25.95 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCeEEEecCceEEEeccCCChHHHHHHHHHhCCC
Q 026839 27 AEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRK 70 (232)
Q Consensus 27 i~~a~~~L~~G~vi~~PTdTvYgl~~~~~n~~av~rl~~iK~R~ 70 (232)
-..|.++|+..|.++ + ++-+||-|.+++++++|-+.|-..
T Consensus 72 ~~~A~rAL~~NG~ii---~-G~mIGV~Py~~~~ve~l~~~~~~~ 111 (132)
T 3p3d_A 72 PASAVDALLENGAVF---N-GVLLGVIPYTKDAVERLQKRKLTS 111 (132)
T ss_dssp HHHHHHHHTTTTCEE---T-TEECEEEECCHHHHHHHC------
T ss_pred HHHHHHHHHhCCeEe---C-cEEEEEEECCHHHHHHHhcCCccc
Confidence 467778888777775 2 358999999999999987766543
No 17
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=26.64 E-value=34 Score=24.00 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEecC
Q 026839 20 RPATEAHAEEAIQALKTGKVIAVPTD 45 (232)
Q Consensus 20 ~~~~~~~i~~a~~~L~~G~vi~~PTd 45 (232)
.|.+-++.+++++.|++|..|++--+
T Consensus 11 ~P~sy~Da~~I~d~Lr~~~~VvvNL~ 36 (87)
T 3p04_A 11 ELHSFEDAQVIGGAFRDGDAVVFDMS 36 (87)
T ss_dssp ECSSGGGHHHHHHHHHTTCCEEEECT
T ss_pred ecCcHHHHHHHHHHHHCCCEEEEECC
Confidence 35555678999999999999988644
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=25.12 E-value=84 Score=20.19 Aligned_cols=30 Identities=10% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHhCCCeEEEecCceEEEe
Q 026839 22 ATEAHAEEAIQALKTGKVIAVPTDTLYGFA 51 (232)
Q Consensus 22 ~~~~~i~~a~~~L~~G~vi~~PTdTvYgl~ 51 (232)
.+...+.+.++.|++-|+|.-+...-|.++
T Consensus 37 lsr~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 37 VPKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred cCHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 346788999999999888877766778776
No 19
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=21.78 E-value=90 Score=21.23 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCCeE-EEecCceEEEe
Q 026839 24 EAHAEEAIQALKTGKVI-AVPTDTLYGFA 51 (232)
Q Consensus 24 ~~~i~~a~~~L~~G~vi-~~PTdTvYgl~ 51 (232)
+..+++++..|+.|.+- .+.|+.+|++.
T Consensus 58 ~~~f~~a~~~l~~G~is~pv~t~~G~hIi 86 (92)
T 1jns_A 58 VPAFDKVVFSCPVLEPTGPLHTQFGYHII 86 (92)
T ss_dssp CHHHHHHHHHSCTTCCEEEEEETTEEEEE
T ss_pred CHHHHHHHHhCCCCCcCCcEEECCEEEEE
Confidence 46789999999999995 78999999986
No 20
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=21.04 E-value=80 Score=28.06 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHhCCC--eEEEecCceEE-------EeccCCChHHHHHHHHHhCCCCCCC
Q 026839 23 TEAHAEEAIQALKTGK--VIAVPTDTLYG-------FACDACSSEAVNRIYEIKGRKHTSP 74 (232)
Q Consensus 23 ~~~~i~~a~~~L~~G~--vi~~PTdTvYg-------l~~~~~n~~av~rl~~iK~R~~~Kp 74 (232)
+.+.++++++.|++|| ++++|--|-.- +.-.+++..+++=++.+=.+.. .|
T Consensus 208 n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg-~P 267 (367)
T 1iuq_A 208 NTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSD-VP 267 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSS-SC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcC-CC
Confidence 3468889999999966 55678766554 4456788889877777766653 44
No 21
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=20.16 E-value=2.1e+02 Score=23.73 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCeEEEecC------ceEEEeccCCChHHHHHHHHHhCCCCCCCcEEEECCHhhHhhhh
Q 026839 26 HAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 89 (232)
Q Consensus 26 ~i~~a~~~L~~G~vi~~PTd------TvYgl~~~~~n~~av~rl~~iK~R~~~Kpl~llv~s~~~l~~~~ 89 (232)
.+++|++.|++|+.|++=.| +-.-+++....++.+..+.+- ...++.++-+-+.+.++.
T Consensus 14 ~ie~Ai~alr~G~~Viv~DdedREnEgDLi~aAe~~T~e~i~fm~r~-----~~GliC~~lt~e~~~~L~ 78 (233)
T 1k4i_A 14 AIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRH-----SSGLICAPLTPERTTALD 78 (233)
T ss_dssp CHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHH-----BCSCCEEEECHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCcceeEEEEhhhCCHHHHHHHHHc-----CCCCEEEEcCHHHHhhCC
Confidence 48999999999999999765 356777888888888776553 245555555677776664
Done!