RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026839
         (232 letters)



>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
           [TaxId: 562]}
          Length = 206

 Score =  100 bits (250), Expect = 6e-27
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 6/185 (3%)

Query: 28  EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
            +A++ ++ G VI  PTD+ Y   C      A+ RI  I+         +   D+S+++ 
Sbjct: 18  NQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELST 77

Query: 88  FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
           ++  D+     L           + +G      + L    ++IG+RVP +   + +   L
Sbjct: 78  YSFVDN-VAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEAL 136

Query: 148 ESALALTSANLTGQPSSVSVKD--FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFK 205
              +  TS  L G   + S  +   + L ++   +  GG    G+  +TV+DLT      
Sbjct: 137 GEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG--YLGQKPTTVIDLTD-DTPV 193

Query: 206 ILRPG 210
           ++R G
Sbjct: 194 VVREG 198


>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 208

 Score =  100 bits (248), Expect = 1e-26
 Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 6/192 (3%)

Query: 28  EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
           EEAI  ++ G ++  PTDT+YG   +A   +AV R++ +KGR    P++ICV  V +I R
Sbjct: 17  EEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPR 76

Query: 88  FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 147
           F+        L++ +LPGP TVVL R E   +   +  G   +G+RVPD    R IA   
Sbjct: 77  FSRPSGDAMELMERILPGPYTVVLERNE--LIPDVITGGSSRVGIRVPDDEICRRIAA-- 132

Query: 148 ESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKIL 207
              +  TSAN++G+P S  +++     +    V D G        STV+DLT     ++L
Sbjct: 133 RFPVTATSANISGKPPSPRLEEIVRDLDAVDLVLDAGDCLDMEP-STVIDLTV-NPPRVL 190

Query: 208 RPGSAKEETIAI 219
           R G    + + +
Sbjct: 191 RRGKGPLDPVLL 202


>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 98.9 bits (245), Expect = 2e-26
 Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 5/182 (2%)

Query: 28  EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 87
             AI  L   +VIA PT+ ++G  CD  S  AV R+ E+K R     L +   +   +  
Sbjct: 9   AAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKP 68

Query: 88  FAVTDHLPHGLLDSLLPG-PVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 146
           +     L     +++    P  V       +   + L    +S+ VRV D   V  + + 
Sbjct: 69  YIDDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQA 128

Query: 147 LESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKI 206
               L  TSANL+G P   +V +    +     V  G         S + D       ++
Sbjct: 129 YGKPLVSTSANLSGLPPCRTVDEVRAQFGAAFPVVPGETGGRLNP-SEIRDAL---TGEL 184

Query: 207 LR 208
            R
Sbjct: 185 FR 186


>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2
           {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
          Length = 384

 Score = 28.4 bits (62), Expect = 0.84
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 69  RKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNP-GL 127
           R   +  +I  G  +       +DH  +   +               + N E    P GL
Sbjct: 279 RPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGL 338

Query: 128 ESIGVRVP---DSNFVRVIARGLESALALTSAN 157
             +  R+P   D  ++R     +   + +   N
Sbjct: 339 PGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTN 371


>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 322

 Score = 27.1 bits (59), Expect = 1.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 153 LTSANLTGQPSSVSVKDFE 171
           L +ANLTG    V +++FE
Sbjct: 9   LRTANLTGHAEKVGIENFE 27


>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
          synthase, DHBP synthase, RibB {Magnaporthe grisea
          [TaxId: 148305]}
          Length = 216

 Score = 25.0 bits (54), Expect = 7.2
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 10/48 (20%)

Query: 28 EEAIQALKTGKVIAV--------PTDTLYGFACDACSSEAVNRIYEIK 67
           + IQA K G+ + V          D +   A ++ ++E +  +    
Sbjct: 5  PDVIQAFKNGEFVVVLDDPSRENEADLI--IAAESVTTEQMAFMVRHS 50


>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm
           (Ancylostoma caninum) [TaxId: 29170]}
          Length = 78

 Score = 23.8 bits (51), Expect = 9.0
 Identities = 4/16 (25%), Positives = 5/16 (31%)

Query: 175 ERCACVYDGGVLPSGR 190
           E C       + P  R
Sbjct: 63  EDCELDNMDFIYPGTR 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 810,881
Number of extensions: 36129
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 8
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)