BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026840
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JP11|C3H3_ORYSJ Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp.
japonica GN=Os01g0252200 PE=2 SV=2
Length = 167
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 94/165 (56%), Gaps = 16/165 (9%)
Query: 1 MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTY----------- 49
MPLGKYYCDYC+KQFQDT ARKRHL G QH RA+ALWYD++
Sbjct: 1 MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60
Query: 50 PDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATG--FTDINARSSSVD 107
P GVC FV+TG C FGDSC+Y HPK PA +G N + S +
Sbjct: 61 PGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQPN 120
Query: 108 QRIYLAG-GSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
Y A GSSF G+++ SWGNLPPSL+PPPEGGYP P
Sbjct: 121 FVGYQAADGSSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPF 163
>sp|Q6AXL8|ZMAT5_DANRE Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1
Length = 173
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 5 KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
+YYCDYCD+ FQD RK+HL G+QH RAK W+D+ + D K VC +FV+T
Sbjct: 4 RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63
Query: 65 GFCPFGDSCKYLHPKNNP----AQNTGNQGLRATGFTDINARSSSVDQ---RIYLAGGSS 117
G C FG SC++ H Q ++ + + SVD+ R +
Sbjct: 64 GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123
Query: 118 FPGDMMRDSMG------------MSWGNLPPSLKPPPEGGY 146
G ++R +S +LPPSL PPP GG+
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGW 164
>sp|Q2TA39|ZMAT5_BOVIN Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1
Length = 170
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 5 KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
+Y+CDYCD+ FQD RK+HL G+QHL+AK LWYD + D K C +F+ T
Sbjct: 4 RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKFLLT 63
Query: 65 GFCPFGDSCKYLHPKNNPAQNTGNQ----------GLRATGFTDINARSSSVDQRIYLAG 114
G C FG +C++ H Q Q L ++ + L+
Sbjct: 64 GQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRLSS 123
Query: 115 GSSFPGDMMRDSM---GMSW---GNLPPSLKPPPEGGYPLLP 150
S + +R ++ + W LPPSL+ PP GG+PL P
Sbjct: 124 APSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQP 165
>sp|Q9UDW3|ZMAT5_HUMAN Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1
SV=1
Length = 170
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 5 KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
+Y+CDYCD+ FQD RK+HL G+QHL+AK +WYD + D K C +F+ T
Sbjct: 4 RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63
Query: 65 GFCPFGDSCKYLHPKNNPAQNTGNQG----------LRATGFTDINARSSSVDQRIYLAG 114
G C FG +C++ H Q Q L A + + + L+
Sbjct: 64 GQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSS 123
Query: 115 GSSFPGDMMRDSM---GMSW---GNLPPSLKPPPEGGYPLLP 150
S + +R ++ + W LPPSL+ PP GG+PL P
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQP 165
>sp|Q9CQR5|ZMAT5_MOUSE Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2
SV=1
Length = 170
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 5 KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
+Y+CDYCD+ FQD RK+HL G+QHL+AK +WYD + D K C +F+ T
Sbjct: 4 RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63
Query: 65 GFCPFGDSCKYLHPKNNPAQNTGNQ----------GLRATGFTDINARSSSVDQRIYLAG 114
G C FG +C++ H Q Q L + + + L+
Sbjct: 64 GQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSS 123
Query: 115 GSSFPGDMMRDSM---GMSW---GNLPPSLKPPPEGGYPLL 149
S + +R ++ + W LPPSL+ PP GG+ +L
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVL 164
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 31 HLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
H R +A ++ T Q YP+ F + C ++KTG C FG SCK+ HPKN
Sbjct: 70 HPRDRASVEATVRATGQ-YPERFGEPPCQFYLKTGTCKFGASCKFHHPKN 118
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 44 ETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
+ Q +P+ + C ++KTG C FG SCK+ HP++
Sbjct: 281 QKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDR 318
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 20 FARKRHLQGIQHLRA-------------KALWYDSLNETNQTYPDGFPKGVCSRFVKTGF 66
+AR L G Q +A +++W L + +YP+ C+ +++TG
Sbjct: 2 YARNPPLNGSQSAQAPDWTPADADTGLQESMWRLGLG--SDSYPERPGAPDCAYYMRTGV 59
Query: 67 CPFGDSCKYLHPKNNPAQNTGNQGLRATG 95
C +G+ C+Y HP++ + + +RATG
Sbjct: 60 CGYGNRCRYNHPRD---RASVEATVRATG 85
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 58 CSRFVKTGFCPFGDSCKYLHP 78
C+ +V+ GFC FG +CK+ HP
Sbjct: 341 CTFYVQNGFCKFGSTCKFDHP 361
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 58 CSRFVKTGFCPFGDSCKYLHPKNNPAQNT 86
CS ++KTG C FG +CK+ HP+ PA T
Sbjct: 142 CSYYLKTGQCKFGITCKFHHPQ--PAGTT 168
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
thaliana GN=At5g18550 PE=2 SV=1
Length = 465
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 29 IQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
H R +A L +P+ + VC F++TG C FG SCKY HP+
Sbjct: 74 FNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQG 126
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 28 GIQHLRAKALWYDS------LNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHP 78
GI L A Y S ++ QT+P + C F++TG C FG SC++ HP
Sbjct: 270 GITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHP 326
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 52 GFP----KGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRA-----TGFTDINAR 102
GFP + CS F++TG C FG +C+Y HP Q Q + T + + ++
Sbjct: 141 GFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQ 200
Query: 103 SSSVDQR--IYLAGGSSFPGDMMRDSMGMSWGNLPPSLKP 140
+ Q+ + LA PG ++ G LPP + P
Sbjct: 201 TVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVP 240
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 47 QTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
+T+P+ + C +++TG C +G C++ HP+N
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNR 80
>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1
Length = 343
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 20 FARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
RK ++ +HLRA W PD +C + +TGFC FGDSCK+LH +
Sbjct: 177 MVRKGPIRAPEHLRATVRW--------DYQPD-----ICKDYKETGFCGFGDSCKFLHDR 223
Query: 80 NN 81
++
Sbjct: 224 SD 225
>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1
Length = 343
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 20 FARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
RK ++ +HLRA W PD +C + +TGFC FGDSCK+LH +
Sbjct: 177 MVRKGPIRAPEHLRATVRW--------DYQPD-----ICKDYKETGFCGFGDSCKFLHDR 223
Query: 80 NN 81
++
Sbjct: 224 SD 225
>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3
Length = 322
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 20 FARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
ARK ++ HLRA W PD +C + +TGFC FGDSCK+LH +
Sbjct: 171 MARKGPIRAPGHLRATVRW--------DYQPD-----ICKDYKETGFCGFGDSCKFLHDR 217
Query: 80 NN 81
++
Sbjct: 218 SD 219
>sp|E3LAN7|RU1C1_PUCGT U1 small nuclear ribonucleoprotein C-1 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_19611 PE=3 SV=1
Length = 190
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 3 LGKYYCDYCDK-QFQDTYFARKRHLQGIQHLRAKALWYDSL-NETNQTYPDGFPKGVCSR 60
+GKYYCDYCD ++ RK H G HL +Y SL ++ Q+Y D +R
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRDYYSSLGHDKAQSYID-----EITR 55
Query: 61 FVKTGFCPFGDSCKYLHPKNNP 82
+TG G+S P NP
Sbjct: 56 MFETG---GGNSTSNRGPGGNP 74
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC24 PE=3 SV=1
Length = 226
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 29 IQHLRAKALWYDSLNET--------------NQTYPDGFPKGVCSRFVKTGFCPFGDSCK 74
++ L+ +A +D LN T F VC F +TG+C +GDSCK
Sbjct: 70 LKRLKEQATKHDRLNSEPVASSKKIQQAANLRNTILTDFQPDVCKDFKQTGYCGYGDSCK 129
Query: 75 YLHPKNN 81
+LH +++
Sbjct: 130 FLHSRDD 136
>sp|E3KIY6|RU1C2_PUCGT U1 small nuclear ribonucleoprotein C-2 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_10639 PE=3 SV=1
Length = 188
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 3 LGKYYCDYCDK-QFQDTYFARKRHLQGIQHLRAKALWYDSL-NETNQTYPDGFPKGVCSR 60
+GKYYCDYCD ++ RK H G HL +Y SL ++ Q+Y D +R
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRDYYSSLGHDKAQSYID-----EITR 55
Query: 61 FVKTGFCPFGDSCKYLHPKNNP 82
+TG G+S P NP
Sbjct: 56 MFETG---GGNSTSNRGPGGNP 74
>sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC24 PE=3 SV=1
Length = 229
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 57 VCSRFVKTGFCPFGDSCKYLHPKNNPA 83
+C F KTG+C +GDSCK+LH +++ A
Sbjct: 115 ICKDFQKTGYCGYGDSCKFLHSRDDVA 141
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=rnf-113 PE=2 SV=2
Length = 384
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 53 FPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
F +C + +TGFC FGDSCK++H +++
Sbjct: 176 FAPDICKDYKETGFCTFGDSCKFVHDRSD 204
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 38 WYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
W + ++YP+ + C F+KTG C FG CK+ HPK
Sbjct: 142 WKEQAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEK 185
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 57 VCSRFVKTGFCPFGDSCKYLHPKN---NPAQNTGNQGLRATGFTDINARSSSVDQRI 110
+CS + KTG C F CK+ HPK+ +QN + G TDI + + SV ++
Sbjct: 214 LCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKM 270
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 48 TYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQN 85
TYP VC ++KTGFC F D CK+ HP + A +
Sbjct: 363 TYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPD 400
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 39 YDSLNETNQTYPDGFPKG----VCSRFVKTGFCPFGDSCKYLHP 78
++ E+ Q G P+ VC+ ++KTG C FG CK+ HP
Sbjct: 405 WEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP 448
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
thaliana GN=ZFN1 PE=1 SV=1
Length = 397
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQ 108
YP+ + C ++KTG C FG +CK+ HP+N A G L G+ RS+ VD
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNK-AGIAGRVSLNMLGYP---LRSNEVDC 137
Query: 109 RIYLAGG 115
+L G
Sbjct: 138 AYFLRTG 144
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 32 LRAKALWYDSL--NETNQT--YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
+ A+W +L +ET +T YP+ + CS +++TG C FG +C++ HP++
Sbjct: 16 MNQDAMWQMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRD 68
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 29 IQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA 83
H R KA ++ YP + C+ F++TG C FG +CK+ HP+ P
Sbjct: 108 FHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPT 162
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA 83
+P+ + C ++KTG C FG CK+ HP++ A
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQA 305
>sp|Q59P44|RU1C_CANAL U1 small nuclear ribonucleoprotein C OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YHC1 PE=3 SV=1
Length = 150
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDS-LNETNQTYPDGFP 54
+ KYYCDYC DT RK HLQG H++ +Y++ ETN P P
Sbjct: 1 MPKYYCDYCKSYLTHDTMSVRKSHLQGRNHIKFYCDYYEAKAKETNIWNPSSIP 54
>sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24
PE=3 SV=1
Length = 339
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 53 FPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
F VC + +TGFC FGDSCK+LH + +
Sbjct: 171 FAPDVCKDWKQTGFCGFGDSCKFLHARED 199
>sp|C4YIU5|RU1C_CANAW U1 small nuclear ribonucleoprotein C OS=Candida albicans (strain
WO-1) GN=YHC1 PE=3 SV=1
Length = 150
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDS-LNETNQTYPDGFP 54
+ KYYCDYC DT RK HLQG H++ +Y++ ETN P P
Sbjct: 1 MPKYYCDYCKSYLTHDTMSVRKSHLQGRNHIKFYCDYYEAKAKETNIWNPSSIP 54
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 35 KALWYDSLNETNQT--YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
+A+W +L E + YP+ + CS +++TG C FG +CK+ HP +
Sbjct: 37 EAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADR 85
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGF 96
YP + C ++KTG C FG +CK+ HP+ A T Q L A G+
Sbjct: 98 YPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQ-LNALGY 144
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 29 IQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
H R KA + YP + C+ +++TG C FG +CK+ HP+
Sbjct: 124 FHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQ 174
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 44 ETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
+ +P+ + C ++KTG C FG CK+ HPK
Sbjct: 301 QRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKER 338
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 29 IQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
H R + + P+ VC F++TG C FG SCKY HP+
Sbjct: 77 FNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQG 129
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 41 SLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTG 87
S N T++ +P + C F++TG C FG SC+Y HP + TG
Sbjct: 296 SSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTG 342
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 47 QTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQG 90
++YP+ + C +++TG C +G C++ HP++ A G +G
Sbjct: 49 ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRG 92
>sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24
PE=3 SV=1
Length = 250
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 57 VCSRFVKTGFCPFGDSCKYLHPKNN 81
VC + +TGFC +GDSCK+LH +++
Sbjct: 106 VCKDYRQTGFCGYGDSCKFLHSRDD 130
>sp|Q54YA5|RU1C_DICDI U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum
GN=snrpC PE=3 SV=1
Length = 174
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLN 43
+ KYYCDYCDK D+ RK H G QH A L+Y
Sbjct: 1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFE 42
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 43 NETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
N YP+ + +C ++KTG C FG +CKY HPK +
Sbjct: 99 NAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQD 137
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 34 AKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTG 87
A + S N+ +P+ + C +++TG C FG +CKY HP+ A +G
Sbjct: 289 ASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSG 342
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 58 CSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGS 116
C +++TG C FGD C+Y HP++ G G R D R+ Y+ G+
Sbjct: 65 CVYYLRTGACGFGDRCRYNHPRDRGGTEFGG-GARNAAALDYPERAGQPICEYYMKTGT 122
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 46 NQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
N +P + CS ++KTG C FG +CK+ HP+
Sbjct: 147 NSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPE 180
>sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC24 PE=3 SV=2
Length = 232
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 53 FPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQ 84
F VC F++TG+C +GD+CK+LH ++ Q
Sbjct: 113 FQPDVCKDFLQTGYCGYGDTCKFLHIRDESKQ 144
>sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=cwc-24 PE=3 SV=1
Length = 405
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 57 VCSRFVKTGFCPFGDSCKYLHPKNN 81
VC + +TGFC FGD+CK+LH + +
Sbjct: 226 VCKDYKQTGFCGFGDNCKFLHARED 250
>sp|A5JZQ2|RU1C_PLAVS U1 small nuclear ribonucleoprotein C OS=Plasmodium vivax (strain
Salvador I) GN=PVX_123135 PE=3 SV=1
Length = 240
Score = 37.7 bits (86), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 5 KYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF 53
KYYC+YCD + R++H+QG +H+ AK ++ +L P F
Sbjct: 3 KYYCEYCDIYLTHSSPVGRRQHIQGRKHISAKIEYFQNLLREEGITPQNF 52
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 44 ETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
ET + P+ + +C+ ++KTG C FG SCK+ HPK+
Sbjct: 260 ETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKD 296
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 35 KALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
+ L +L + TYP + C ++KTG C FG+ CK+ HP +
Sbjct: 403 QTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPAD 448
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 38 WYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQ 89
W ++ N+ YP+ + C ++KT C +G CK+ HP+ A + Q
Sbjct: 211 WKEAPVVPNEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQ 262
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 19 YFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHP 78
YF ++ L+ HL YP + C+ +++T C FG+SC++ HP
Sbjct: 155 YFTKRPKLESTSHL--------------PIYPQRAGEKDCTHYMQTRTCKFGESCRFDHP 200
>sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1
Length = 259
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 53 FPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
F VC + +TG+C +GDSCK+LH +++
Sbjct: 139 FQPDVCKDYKQTGYCGYGDSCKFLHSRDD 167
>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=CWC24 PE=3 SV=1
Length = 355
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 57 VCSRFVKTGFCPFGDSCKYLHPKNN 81
VC + +TG+C FGD+CK+LH +++
Sbjct: 202 VCKDYKETGYCGFGDTCKFLHDRSD 226
>sp|B3LC82|RU1C_PLAKH U1 small nuclear ribonucleoprotein C OS=Plasmodium knowlesi
(strain H) GN=PKH_142590 PE=3 SV=1
Length = 228
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 5 KYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF 53
KYYC+YCD + R++H+QG +H+ AK ++ +L P F
Sbjct: 3 KYYCEYCDIYLTHSSPVGRRQHVQGRKHISAKIEYFQNLLREEGITPQNF 52
>sp|P0CQ64|CWC24_CRYNJ Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC24 PE=3 SV=1
Length = 329
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 57 VCSRFVKTGFCPFGDSCKYLHPKNN 81
VC + +TGFC +GDSCK+LH + +
Sbjct: 182 VCKDYKETGFCGYGDSCKFLHDRGD 206
>sp|P0CQ65|CWC24_CRYNB Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC24 PE=3
SV=1
Length = 329
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 57 VCSRFVKTGFCPFGDSCKYLHPKNN 81
VC + +TGFC +GDSCK+LH + +
Sbjct: 182 VCKDYKETGFCGYGDSCKFLHDRGD 206
>sp|Q8IAW3|RU1C_PLAF7 U1 small nuclear ribonucleoprotein C OS=Plasmodium falciparum
(isolate 3D7) GN=PF08_0084 PE=3 SV=1
Length = 235
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
+ KYYC+YCD + R++H+ G +H+ AK ++ +L P F + +R
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHIHGRKHISAKIEYFQNLLREEGITPQNFLGFLNNRN 60
Query: 62 VKTGFCPFGDS-CKYLHP----KNNPAQNTGNQGLRATGFTDINARSSSVDQRIYL 112
+ P G+ Y++P K NP ++ + +R++ +N ++ + Y+
Sbjct: 61 INN---PLGNPMMNYMNPNMYMKYNPMKSYHSYSMRSSHPYRLNIHNNKYSRAGYV 113
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 41 SLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDIN 100
S NE+ YP CS +++TG C FG SCK+ HP Q + +R D
Sbjct: 99 SENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREK--EDDG 156
Query: 101 ARSSSVDQRIYLAGGSSFPGDMMRDSMGMSWGNLPPS-LKPPPEGGYPLLPLWIGD 155
+ +D + Y G G+ R + +P S L PE + LPL G+
Sbjct: 157 GKLGLIDCKYYFRTGGCKYGETCRFNH-----TIPKSGLASAPELNFLGLPLRPGE 207
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 47 QTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
+ +P+ + CS ++KTG C F +CKY HPKN
Sbjct: 341 EEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKN 374
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 33 RAKALWYDSLNETNQT--YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQ 84
RA A + +T + YP+ + VC ++K G C FG +CKY HP+ Q
Sbjct: 80 RAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQ 133
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 58 CSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGS 116
C +++TG C +G++C+Y HP++ A N G + T + R Y+ G+
Sbjct: 57 CVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGT 115
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 58 CSRFVKTGFCPFGDSCKYLHPK--NNPAQN 85
C ++KTG C FG +CKY HP+ N P N
Sbjct: 305 CQYYLKTGSCKFGSACKYHHPQYLNTPKSN 334
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 31 HLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGN 88
H R ++ LN + YP + C+ +VKTG C FG +CK+ HP+ T N
Sbjct: 126 HPREGSVQAVMLNSSG--YPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPN 181
>sp|Q4P2Q5|RU1C_USTMA U1 small nuclear ribonucleoprotein C OS=Ustilago maydis (strain
521 / FGSC 9021) GN=UM05608 PE=3 SV=1
Length = 221
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLN 43
+GK+YCDYCD D+ RK H G HL+ +Y +L
Sbjct: 1 MGKHYCDYCDVFLTHDSVSVRKAHNSGRNHLQNVREYYQTLE 42
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
sativum PE=2 SV=1
Length = 417
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 35 KALWYDSL--NETNQT--YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
+A+W +L +ET ++ YP+ + CS +++TG C FG +C++ HP N
Sbjct: 9 EAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 59
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQ 108
+P+ + C ++KTG C FG +C++ HPK+ G G A R + ++
Sbjct: 72 FPERLGQPECQYYLKTGTCKFGATCRFHHPKD----KAGVAGRVALNILGYPLRPNESER 127
Query: 109 RIYLAGG 115
YL G
Sbjct: 128 AYYLRTG 134
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 35 KALWYDSLN--ETNQT--YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
+A+W +L E+ ++ YP+ + CS +++TG C FG +CK+ HP N
Sbjct: 45 EAMWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPN 94
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 46 NQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA 83
N YP + C ++KTG C FG +CK+ HP+ A
Sbjct: 105 NGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAA 142
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 29 IQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
H R KA + + YP + C+ +++TG C F +CK+ HP+
Sbjct: 134 FHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQ 184
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN--PAQN 85
+P+ + C ++KTG C FG CK+ HPK PA N
Sbjct: 315 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPN 353
>sp|O60138|YNS7_SCHPO Uncharacterized protein C18H10.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC18H10.07 PE=4 SV=1
Length = 224
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 3 LGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETN 46
+ KYYC YC +DT FAR+ H Q +H A D ++ +N
Sbjct: 8 IPKYYCKYCQIFVKDTPFARRSHEQTYKHQDAIKKVMDDIHRSN 51
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 21 ARKRHLQGIQHLRAKALWYDSLNETNQTYPDG-FPKGVCSRFVK--TGFCPFGDSCKYLH 77
AR + G++ LRA + YP+ + +C F + TGFCP+G C+++H
Sbjct: 290 ARCKFAHGLKELRA--------TDAPARYPNNKYKTKLCKNFARGGTGFCPYGLRCEFVH 341
Query: 78 PKNNPAQN 85
P + QN
Sbjct: 342 PTDKEFQN 349
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
thaliana GN=ZFN3 PE=2 SV=2
Length = 375
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
YP+ + C ++KTG C FG +CK+ HP+N
Sbjct: 84 YPERIGQPECEFYLKTGTCKFGVTCKFHHPRN 115
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 32 LRAKALWYDSLNETNQ-----TYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
L A+W +L + +YP+ + C+ +++TG C FG +C++ HP +
Sbjct: 17 LNQNAMWQMNLGSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHD 70
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 29 IQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
H R KA S++ +YP + CS F++ G C FG +CK+ HP+
Sbjct: 110 FHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQ 162
>sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC24 PE=3 SV=1
Length = 216
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 53 FPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQN 85
F VC F + G+C +GD+CK+LH ++ Q
Sbjct: 99 FQPDVCKDFQQIGYCGYGDTCKFLHVRDESRQK 131
>sp|Q5KC16|RU1C_CRYNJ U1 small nuclear ribonucleoprotein C OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC
MYA-565) GN=CNI00630 PE=3 SV=1
Length = 220
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHL 32
+GKYYCDYCD D+ ARK H G H+
Sbjct: 1 MGKYYCDYCDIYLTHDSMNARKAHNSGRNHV 31
>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
subsp. japonica GN=Os12g0278800 PE=2 SV=1
Length = 529
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 46 NQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
++ YP+ + C FVK+GFC F CKY HP++
Sbjct: 427 SEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRS 461
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 58 CSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFT---DINARSSS------VDQ 108
C +++TG C + +CK+ HP + + Q G D+ SS DQ
Sbjct: 291 CPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQ 350
Query: 109 RIYLAGGSSFPGDMMRDSMGMSWGNLPPS-LKPPPE-GGYPLLPLWIGDSSAVSFSH 163
R F + S S G LPP + PPPE GY +PL V F H
Sbjct: 351 RTVNEHHVPF----IAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQH 403
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 44 ETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
E + YPD + C F++TG C +G+SC+Y HP N
Sbjct: 36 EQSSPYPDRPGERDCQFFLRTGQCGYGNSCRYNHPLTN 73
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 55 KGVCSRFVKTGFCPFGDSCKYLHPKN 80
+ C F+ TG C +GD CKY HPK
Sbjct: 264 RAECRFFMNTGTCKYGDDCKYSHPKE 289
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
Y D P+ V +TG C +G +CKY HPK+
Sbjct: 81 YRDQLPERVGQPDCETGACKYGPTCKYHHPKD 112
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 58 CSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDI 99
C +++TG C FG +CK+ HP + + G+ + F +
Sbjct: 135 CPYYMQTGLCRFGVACKFHHPHPHSQPSNGHSAYAMSSFPSV 176
>sp|Q05900|RU1C_YEAST U1 small nuclear ribonucleoprotein C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YHC1 PE=1 SV=1
Length = 231
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWY 39
+ +YYC+YC DT RK HL G HLR A +Y
Sbjct: 1 MTRYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYY 38
>sp|D3B3B7|RU1C_POLPA U1 small nuclear ribonucleoprotein C OS=Polysphondylium pallidum
GN=snrpC PE=3 SV=1
Length = 141
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLN 43
+ KYYC+YCDK D+ RK H G H +A L+Y
Sbjct: 1 MPKYYCEYCDKYLTHDSPSVRKSHTIGKVHQQAVTLYYKQFE 42
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
YP+ + C ++KTG C FG +CK+ HP+
Sbjct: 122 YPERMGQPECQYYLKTGTCKFGPTCKFHHPREK 154
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 29 IQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
H R KA + YP + C+ ++KTG C +G++CK+ HP+
Sbjct: 148 FHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPE 198
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
YP+ + C+ +++TG C FG SC++ HP++
Sbjct: 77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDR 109
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 44 ETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPK 79
+ +P+ + C ++KTG C FG CK+ HP+
Sbjct: 324 QRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPR 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,004,608
Number of Sequences: 539616
Number of extensions: 4272025
Number of successful extensions: 9475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 9178
Number of HSP's gapped (non-prelim): 358
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)