Query 026841
Match_columns 232
No_of_seqs 135 out of 1259
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0078 ArgF Ornithine carbamo 100.0 4.7E-38 1E-42 286.7 8.6 149 81-230 140-310 (310)
2 PLN02527 aspartate carbamoyltr 100.0 7.1E-36 1.5E-40 272.8 12.0 150 82-232 139-306 (306)
3 TIGR00670 asp_carb_tr aspartat 100.0 5.5E-35 1.2E-39 266.6 12.1 147 82-230 138-301 (301)
4 PF00185 OTCace: Aspartate/orn 100.0 8E-35 1.7E-39 242.5 10.5 127 100-228 17-158 (158)
5 PLN02342 ornithine carbamoyltr 100.0 5.1E-34 1.1E-38 265.1 11.7 149 82-231 182-348 (348)
6 PRK04284 ornithine carbamoyltr 100.0 3.1E-33 6.8E-38 258.1 10.8 149 82-231 142-332 (332)
7 PRK00856 pyrB aspartate carbam 100.0 2.5E-33 5.5E-38 256.0 9.7 147 82-232 144-304 (305)
8 PRK14805 ornithine carbamoyltr 100.0 4.2E-33 9.1E-38 254.3 11.0 146 82-230 135-301 (302)
9 TIGR00658 orni_carb_tr ornithi 100.0 8.3E-33 1.8E-37 252.1 11.4 147 83-230 137-304 (304)
10 PRK04523 N-acetylornithine car 100.0 2.2E-32 4.8E-37 252.7 11.8 147 82-230 156-334 (335)
11 PRK03515 ornithine carbamoyltr 100.0 2.8E-32 6.1E-37 252.3 12.0 148 83-231 143-334 (336)
12 PRK02255 putrescine carbamoylt 100.0 2.8E-32 6E-37 252.4 11.6 149 83-232 140-314 (338)
13 PRK13814 pyrB aspartate carbam 100.0 1.5E-32 3.3E-37 251.6 9.5 147 82-231 145-305 (310)
14 PRK02102 ornithine carbamoyltr 100.0 3.5E-32 7.5E-37 251.3 11.1 149 82-231 143-331 (331)
15 KOG1504 Ornithine carbamoyltra 100.0 8.7E-33 1.9E-37 248.6 6.8 152 79-231 174-346 (346)
16 PRK00779 ornithine carbamoyltr 100.0 5.2E-32 1.1E-36 247.0 11.7 147 82-229 140-304 (304)
17 PRK12562 ornithine carbamoyltr 100.0 8.3E-32 1.8E-36 249.1 13.0 148 82-230 142-333 (334)
18 PRK01713 ornithine carbamoyltr 100.0 9.2E-32 2E-36 248.4 11.9 147 83-230 144-334 (334)
19 PRK14804 ornithine carbamoyltr 100.0 5.1E-32 1.1E-36 247.9 9.0 146 82-231 139-311 (311)
20 PRK07200 aspartate/ornithine c 100.0 2.1E-31 4.6E-36 251.1 10.1 145 82-227 172-373 (395)
21 PRK11891 aspartate carbamoyltr 100.0 7E-31 1.5E-35 249.7 11.8 159 70-231 203-399 (429)
22 PRK08192 aspartate carbamoyltr 100.0 2.7E-30 5.8E-35 239.2 13.2 138 92-231 157-318 (338)
23 TIGR03316 ygeW probable carbam 100.0 2.1E-30 4.4E-35 241.7 11.0 125 102-227 194-356 (357)
24 PRK13376 pyrB bifunctional asp 99.9 1.2E-27 2.7E-32 232.3 12.2 149 82-231 161-335 (525)
25 COG0540 PyrB Aspartate carbamo 99.9 4.2E-27 9E-32 215.5 8.5 148 82-231 146-313 (316)
26 cd05212 NAD_bind_m-THF_DH_Cycl 85.8 2.5 5.5E-05 35.0 6.1 55 98-152 14-79 (140)
27 PF00670 AdoHcyase_NAD: S-aden 82.4 9.5 0.00021 32.7 8.3 49 136-200 70-118 (162)
28 PRK00961 H(2)-dependent methyl 74.3 9 0.0002 36.2 6.2 63 86-152 68-149 (342)
29 PF02423 OCD_Mu_crystall: Orni 72.4 5.8 0.00013 36.5 4.5 49 108-156 151-204 (313)
30 PRK06407 ornithine cyclodeamin 70.8 7.1 0.00015 35.9 4.7 63 94-156 124-194 (301)
31 PRK06823 ornithine cyclodeamin 70.0 7.1 0.00015 36.2 4.6 34 122-155 170-203 (315)
32 PF02056 Glyco_hydro_4: Family 69.4 7.3 0.00016 33.9 4.2 30 123-152 50-81 (183)
33 cd05197 GH4_glycoside_hydrolas 68.6 7.1 0.00015 37.8 4.4 30 123-152 51-82 (425)
34 COG0565 LasT rRNA methylase [T 65.8 9.4 0.0002 34.8 4.3 48 105-152 25-80 (242)
35 PRK07589 ornithine cyclodeamin 65.4 9.8 0.00021 36.0 4.5 61 93-153 135-202 (346)
36 PLN02828 formyltetrahydrofolat 63.3 38 0.00082 31.2 7.8 84 93-193 78-181 (268)
37 PF02826 2-Hacid_dh_C: D-isome 62.6 19 0.00041 30.1 5.4 74 105-195 55-129 (178)
38 TIGR00460 fmt methionyl-tRNA f 62.6 26 0.00056 32.3 6.7 57 120-193 47-110 (313)
39 TIGR02371 ala_DH_arch alanine 62.6 12 0.00026 34.6 4.6 32 123-154 171-202 (325)
40 COG0111 SerA Phosphoglycerate 62.4 12 0.00027 34.9 4.6 74 104-192 160-233 (324)
41 COG1486 CelF Alpha-galactosida 61.6 12 0.00026 37.0 4.4 52 94-152 32-85 (442)
42 cd05298 GH4_GlvA_pagL_like Gly 59.6 12 0.00027 36.4 4.2 51 94-152 29-82 (437)
43 cd00650 LDH_MDH_like NAD-depen 56.1 27 0.00058 30.9 5.4 24 129-152 55-78 (263)
44 TIGR01723 hmd_TIGR 5,10-methen 55.6 29 0.00064 32.9 5.7 59 90-152 70-147 (340)
45 COG2423 Predicted ornithine cy 54.6 18 0.00039 34.2 4.2 62 94-155 137-206 (330)
46 cd05296 GH4_P_beta_glucosidase 54.2 18 0.0004 35.0 4.4 30 123-152 52-83 (419)
47 PRK06199 ornithine cyclodeamin 51.8 25 0.00054 33.6 4.8 61 94-154 162-233 (379)
48 PRK00005 fmt methionyl-tRNA fo 51.0 31 0.00066 31.7 5.1 57 120-193 47-110 (309)
49 PRK08291 ectoine utilization p 49.8 34 0.00073 31.6 5.2 27 128-154 181-207 (330)
50 PF00056 Ldh_1_N: lactate/mala 49.7 30 0.00065 28.1 4.4 30 123-152 48-77 (141)
51 PRK15409 bifunctional glyoxyla 47.1 36 0.00078 31.7 5.0 44 136-191 192-235 (323)
52 KOG1370 S-adenosylhomocysteine 45.7 62 0.0013 31.4 6.3 55 136-206 261-315 (434)
53 COG0499 SAM1 S-adenosylhomocys 44.1 1E+02 0.0022 30.3 7.5 91 94-200 190-304 (420)
54 TIGR00561 pntA NAD(P) transhyd 42.5 1.1E+02 0.0024 30.7 7.9 50 139-199 242-294 (511)
55 PRK08410 2-hydroxyacid dehydro 42.4 96 0.0021 28.5 7.0 17 136-152 188-204 (311)
56 PRK14188 bifunctional 5,10-met 42.0 60 0.0013 30.2 5.6 53 100-152 146-209 (296)
57 PTZ00075 Adenosylhomocysteinas 42.0 1.2E+02 0.0026 30.3 8.0 39 137-191 302-340 (476)
58 PRK06141 ornithine cyclodeamin 41.2 42 0.00091 30.8 4.4 63 92-154 130-199 (314)
59 PRK08306 dipicolinate synthase 40.8 70 0.0015 29.2 5.8 50 123-189 189-238 (296)
60 PRK06932 glycerate dehydrogena 40.7 90 0.002 28.8 6.5 44 136-191 189-232 (314)
61 PLN02928 oxidoreductase family 40.6 97 0.0021 29.1 6.8 45 136-192 218-262 (347)
62 PLN02494 adenosylhomocysteinas 40.0 71 0.0015 31.9 6.0 49 137-201 302-350 (477)
63 PRK06487 glycerate dehydrogena 39.7 93 0.002 28.7 6.5 16 137-152 190-205 (317)
64 PRK08618 ornithine cyclodeamin 39.2 48 0.001 30.6 4.5 63 92-154 132-202 (325)
65 COG1004 Ugd Predicted UDP-gluc 39.1 36 0.00078 33.4 3.7 35 118-152 48-84 (414)
66 PF01210 NAD_Gly3P_dh_N: NAD-d 38.8 33 0.00071 28.0 3.0 24 131-154 56-79 (157)
67 PRK06988 putative formyltransf 38.6 1.3E+02 0.0029 27.7 7.3 57 120-193 46-109 (312)
68 TIGR02992 ectoine_eutC ectoine 37.9 54 0.0012 30.3 4.6 63 92-154 134-204 (326)
69 PF02882 THF_DHG_CYH_C: Tetrah 36.5 1E+02 0.0022 26.1 5.7 54 101-154 25-89 (160)
70 PF00389 2-Hacid_dh: D-isomer 36.4 88 0.0019 24.5 5.1 35 117-152 7-46 (133)
71 PRK05647 purN phosphoribosylgl 36.2 1E+02 0.0023 26.7 5.9 56 121-193 43-112 (200)
72 TIGR01327 PGDH D-3-phosphoglyc 35.1 79 0.0017 31.4 5.5 71 106-191 158-228 (525)
73 PF10087 DUF2325: Uncharacteri 35.0 77 0.0017 23.9 4.3 34 119-152 13-56 (97)
74 TIGR00936 ahcY adenosylhomocys 34.4 1.2E+02 0.0027 29.5 6.6 16 137-152 243-258 (406)
75 PRK05476 S-adenosyl-L-homocyst 34.0 1.4E+02 0.003 29.2 6.9 16 137-152 260-275 (425)
76 PRK10433 putative RNA methyltr 33.8 56 0.0012 29.3 3.9 51 103-153 21-79 (228)
77 PRK15469 ghrA bifunctional gly 33.4 1E+02 0.0022 28.5 5.7 17 136-152 182-198 (312)
78 TIGR00518 alaDH alanine dehydr 33.3 1.8E+02 0.0039 27.5 7.4 76 101-189 182-264 (370)
79 PF09895 DUF2122: RecB-family 33.3 75 0.0016 25.6 4.1 33 120-152 10-44 (106)
80 TIGR00639 PurN phosphoribosylg 32.6 1.7E+02 0.0037 25.2 6.6 54 122-192 43-110 (190)
81 PRK07340 ornithine cyclodeamin 31.2 77 0.0017 29.1 4.4 64 91-155 129-199 (304)
82 COG1052 LdhA Lactate dehydroge 30.8 73 0.0016 29.9 4.3 42 138-191 194-235 (324)
83 PRK08605 D-lactate dehydrogena 30.5 67 0.0014 29.8 4.0 48 134-193 190-237 (332)
84 PF05222 AlaDh_PNT_N: Alanine 30.1 1.3E+02 0.0028 24.5 5.2 25 127-153 49-73 (136)
85 COG4074 Mth H2-forming N5,N10- 29.9 67 0.0014 29.9 3.7 61 90-155 70-148 (343)
86 PRK13581 D-3-phosphoglycerate 29.4 1.2E+02 0.0025 30.2 5.6 43 106-152 160-202 (526)
87 PRK15076 alpha-galactosidase; 28.9 81 0.0017 30.6 4.4 23 130-152 61-83 (431)
88 cd05297 GH4_alpha_glucosidase_ 28.8 91 0.002 30.0 4.7 30 123-152 51-82 (423)
89 PLN02285 methionyl-tRNA formyl 28.6 76 0.0017 29.7 4.0 57 120-193 59-127 (334)
90 cd05565 PTS_IIB_lactose PTS_II 28.5 93 0.002 24.4 3.9 35 119-153 18-56 (99)
91 PF03807 F420_oxidored: NADP o 28.4 85 0.0018 22.8 3.5 34 119-153 37-70 (96)
92 PF03720 UDPG_MGDP_dh_C: UDP-g 28.1 62 0.0014 24.8 2.8 25 131-155 53-77 (106)
93 PLN03139 formate dehydrogenase 28.1 85 0.0018 30.2 4.3 45 135-191 246-290 (386)
94 PRK13243 glyoxylate reductase; 27.8 1.1E+02 0.0023 28.6 4.8 17 136-152 196-212 (333)
95 cd03146 GAT1_Peptidase_E Type 27.7 1.9E+02 0.0041 24.9 6.1 30 123-152 53-88 (212)
96 PRK08125 bifunctional UDP-gluc 27.3 1.6E+02 0.0035 29.7 6.4 57 120-193 44-107 (660)
97 PRK15114 tRNA (cytidine/uridin 27.2 79 0.0017 28.4 3.7 52 102-153 22-81 (245)
98 PRK05282 (alpha)-aspartyl dipe 26.9 2.2E+02 0.0048 25.5 6.5 30 123-152 55-87 (233)
99 PLN02306 hydroxypyruvate reduc 26.9 77 0.0017 30.4 3.8 46 135-192 227-272 (386)
100 PRK00257 erythronate-4-phospha 26.7 2.7E+02 0.0058 26.8 7.4 47 136-191 159-206 (381)
101 PF01262 AlaDh_PNT_C: Alanine 25.0 1.6E+02 0.0034 24.3 4.9 41 137-188 95-135 (168)
102 PLN02342 ornithine carbamoyltr 25.0 35 0.00075 32.5 1.1 38 75-113 22-59 (348)
103 PRK14189 bifunctional 5,10-met 25.0 1.6E+02 0.0035 27.3 5.4 52 101-152 147-209 (285)
104 PLN03139 formate dehydrogenase 24.0 1.5E+02 0.0033 28.5 5.2 34 120-153 66-106 (386)
105 PLN00135 malate dehydrogenase 23.7 1.4E+02 0.0029 27.9 4.7 22 131-152 45-66 (309)
106 PRK14194 bifunctional 5,10-met 23.4 1.9E+02 0.0041 27.1 5.6 52 101-152 148-210 (301)
107 PRK07574 formate dehydrogenase 23.3 1.3E+02 0.0028 28.9 4.6 19 134-152 238-256 (385)
108 TIGR00050 rRNA_methyl_1 RNA me 22.9 1.4E+02 0.0029 26.6 4.4 50 103-152 22-79 (233)
109 TIGR01771 L-LDH-NAD L-lactate 22.9 1.6E+02 0.0034 27.1 4.9 21 132-152 52-72 (299)
110 PRK10310 PTS system galactitol 22.6 2E+02 0.0044 21.8 4.8 34 119-152 21-58 (94)
111 PLN00112 malate dehydrogenase 22.4 1.6E+02 0.0035 29.1 5.1 22 131-152 163-184 (444)
112 COG0118 HisH Glutamine amidotr 22.0 2.6E+02 0.0057 25.0 5.9 32 123-155 19-50 (204)
113 PRK14179 bifunctional 5,10-met 21.9 1.9E+02 0.0041 26.9 5.2 52 101-152 147-209 (284)
114 COG0373 HemA Glutamyl-tRNA red 21.6 1.5E+02 0.0033 29.1 4.7 61 123-198 217-281 (414)
115 PRK14182 bifunctional 5,10-met 20.3 2.3E+02 0.0051 26.3 5.5 75 100-193 145-230 (282)
116 KOG2666 UDP-glucose/GDP-mannos 20.3 1.1E+02 0.0023 30.0 3.3 34 119-152 52-86 (481)
117 COG1004 Ugd Predicted UDP-gluc 20.3 96 0.0021 30.5 3.0 25 131-155 363-388 (414)
118 PRK14175 bifunctional 5,10-met 20.0 2.4E+02 0.0053 26.2 5.5 52 101-152 147-209 (286)
No 1
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-38 Score=286.72 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=130.5
Q ss_pred cceeccCCCccccCccchh--------hhHH-HhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCHHHh
Q 026841 81 QAVETQSTPSFTIGKKFQL--------DDVI-ESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEV 141 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~k~~l--------~~li-~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~~EA 141 (232)
-.++|.+-.+=..|+|+.| ||++ .|+.||++ +++++|+++. +.++++|+++++++|++||
T Consensus 140 Dl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~d-v~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eA 218 (310)
T COG0078 140 DLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMD-VRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEA 218 (310)
T ss_pred HHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCe-EEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHH
Confidence 3567888777688999999 4554 55889999 9999997663 3456779999999999999
Q ss_pred hCcCCEEEEccccccccCCChhH-HHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcH
Q 026841 142 ASKCDVVYQTRIQRERFGERTDL-YEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGL 218 (232)
Q Consensus 142 l~~ADVVYtdrwqsEr~~~~~~e-~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL 218 (232)
++||||||||+|.+|+++.+.++ +...+.+||||+++|+.+++|++|||||| ||+||++||+|+|+|++|+|||||+
T Consensus 219 v~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg~~svvfdeAENRl 298 (310)
T COG0078 219 VKGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPASVVFDEAENRL 298 (310)
T ss_pred hCCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHhCCCceeeeehhhhhH
Confidence 99999999999999999876444 44555669999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 026841 219 YIRMALLKLLLV 230 (232)
Q Consensus 219 ~vrmALL~~lLg 230 (232)
|+|||||.++++
T Consensus 299 H~qKAvl~~~l~ 310 (310)
T COG0078 299 HTQKAVLAALLG 310 (310)
T ss_pred HHHHHHHHHhhC
Confidence 999999999985
No 2
>PLN02527 aspartate carbamoyltransferase
Probab=100.00 E-value=7.1e-36 Score=272.76 Aligned_cols=150 Identities=67% Similarity=1.029 Sum_probs=130.1
Q ss_pred ceeccCCCccccCccchh----------hhHHHh-hcc-CcccccccChHHH------HHHHHhCCCEEEEEcCHHHhhC
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIES-QQF-DRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVAS 143 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~A-~~~-~~~~L~va~P~~i------~e~l~~~G~~v~~~~D~~EAl~ 143 (232)
.++|.+..+-..|.|+.| +|++.+ +.| |++ +++++|+++ .+.+++.|+++++++|+++|++
T Consensus 139 l~Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~ 217 (306)
T PLN02527 139 VYTIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVK-IYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVAS 217 (306)
T ss_pred HHHHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCE-EEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhC
Confidence 456665555567777765 576666 556 887 999999765 4567778999999999999999
Q ss_pred cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhcHHHHHH
Q 026841 144 KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMA 223 (232)
Q Consensus 144 ~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~dsp~S~if~QAeNrL~vrmA 223 (232)
|||||||++||.||+++..+++.+++.+|+||.++|+.++++++||||||||+||+++|+++|+|+||+||+||+|+|||
T Consensus 218 ~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~~V~d~p~s~i~~QaeNrl~~~~A 297 (306)
T PLN02527 218 KCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDSDPRAAYFRQAKNGLFIRMA 297 (306)
T ss_pred CCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccHHHhCCCcchHHHHHhcCHHHHHH
Confidence 99999999999888765545566777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 026841 224 LLKLLLVGW 232 (232)
Q Consensus 224 LL~~lLg~~ 232 (232)
||.++++.|
T Consensus 298 ll~~ll~~~ 306 (306)
T PLN02527 298 LLKLLLGGW 306 (306)
T ss_pred HHHHHhCCC
Confidence 999999999
No 3
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=100.00 E-value=5.5e-35 Score=266.55 Aligned_cols=147 Identities=36% Similarity=0.564 Sum_probs=128.2
Q ss_pred ceeccCCCccccCccchh----------hh-HHHhhccCcccccccChHHH------HHHHHhCCCEEEEEcCHHHhhCc
Q 026841 82 AVETQSTPSFTIGKKFQL----------DD-VIESQQFDRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASK 144 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~-li~A~~~~~~~L~va~P~~i------~e~l~~~G~~v~~~~D~~EAl~~ 144 (232)
..+|.+.++=..|.|+.| +| +..++.||++ +++++|+++ .+.+++.|+++++++|+++|+++
T Consensus 138 l~Ti~e~~g~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~-v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~ 216 (301)
T TIGR00670 138 LYTIYEEFGRLDGLKIALVGDLKYGRTVHSLAEALTRFGVE-VYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDE 216 (301)
T ss_pred HHHHHHHhCCCCCCEEEEEccCCCCcHHHHHHHHHHHcCCE-EEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCC
Confidence 356665555567888877 35 5556889998 999999776 34566789999999999999999
Q ss_pred CCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhcHHHHHHH
Q 026841 145 CDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMAL 224 (232)
Q Consensus 145 ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~dsp~S~if~QAeNrL~vrmAL 224 (232)
||||||++||.||+++ .+++.+++.+|+||.++|+.++++++||||||||+||+++|+|+|+|+||+||+||+|+||||
T Consensus 217 aDvvyt~~~~~er~~~-~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~V~d~p~s~i~~QaeNrl~~~~Av 295 (301)
T TIGR00670 217 ADVLYVTRIQKERFPD-PEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPSVDDTPHAKYFKQAFNGVPVRMAL 295 (301)
T ss_pred CCEEEECCccccccCC-HHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHHHhCCccchHHHHHhccHHHHHHH
Confidence 9999999999888764 356778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 026841 225 LKLLLV 230 (232)
Q Consensus 225 L~~lLg 230 (232)
|.++++
T Consensus 296 L~~ll~ 301 (301)
T TIGR00670 296 LSLLLG 301 (301)
T ss_pred HHHHhC
Confidence 999875
No 4
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=100.00 E-value=8e-35 Score=242.54 Aligned_cols=127 Identities=32% Similarity=0.469 Sum_probs=108.0
Q ss_pred hhHH-HhhccCcccccccChHHHH------------HHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHH
Q 026841 100 DDVI-ESQQFDRDILNAIFEDDIK------------DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYE 166 (232)
Q Consensus 100 ~~li-~A~~~~~~~L~va~P~~i~------------e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~ 166 (232)
+|++ .+++||.+ +++++|+++. +++.++|.++++++|++|++++||||||++||++++.++. +..
T Consensus 17 ~Sl~~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~~~s~~~~e~~-~~~ 94 (158)
T PF00185_consen 17 HSLIELLAKFGME-VVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDRWQSMGDKERF-KRL 94 (158)
T ss_dssp HHHHHHHHHTTSE-EEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEESSSCTTSGGHH-HHH
T ss_pred HHHHHHHHHcCCE-EEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcCcccccchHHH-HHH
Confidence 5655 56889998 9999998731 3345679999999999999999999999999988773333 334
Q ss_pred HhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHHHH
Q 026841 167 EARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228 (232)
Q Consensus 167 ~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~l 228 (232)
+.+.+||||.++|+.+++|++|||||| ||.||+++|+++|+++||+||+||+|+|||||.+|
T Consensus 95 ~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV~~~~~s~~~~Qa~N~l~vrmAll~~l 158 (158)
T PF00185_consen 95 EKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEVDDSPRSVYFEQAENRLHVRMALLALL 158 (158)
T ss_dssp HHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHHHTSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhHhCCcccHHHHHHHhHHHHHHHHHHhC
Confidence 455559999999999999999999999 99999999999999999999999999999999875
No 5
>PLN02342 ornithine carbamoyltransferase
Probab=100.00 E-value=5.1e-34 Score=265.11 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=128.2
Q ss_pred ceeccCCCccccCccchh--------hh-HHHhhccCcccccccChHHHH------HHHHhCCC-EEEEEcCHHHhhCcC
Q 026841 82 AVETQSTPSFTIGKKFQL--------DD-VIESQQFDRDILNAIFEDDIK------DYLTSQGV-EWEESADLMEVASKC 145 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~-li~A~~~~~~~L~va~P~~i~------e~l~~~G~-~v~~~~D~~EAl~~A 145 (232)
.++|.+..+=..|+|+.| +| +..++.||.+ ++++.|+++. +.++..|. ++++++|++||+++|
T Consensus 182 l~Ti~e~~G~l~glkva~vGD~~nva~Sli~~~~~~G~~-v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~a 260 (348)
T PLN02342 182 ALTIIEHIGRLEGTKVVYVGDGNNIVHSWLLLAAVLPFH-FVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGA 260 (348)
T ss_pred HHHHHHHhCCcCCCEEEEECCCchhHHHHHHHHHHcCCE-EEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCC
Confidence 356655555567888877 46 4555889998 9999997763 44556674 899999999999999
Q ss_pred CEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHH
Q 026841 146 DVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMA 223 (232)
Q Consensus 146 DVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmA 223 (232)
||||||+|+++++.++.+++.+++.+|+||.++|+.+++|++|||||| ||+||+++|+|+|+|+||+||+||+|+|||
T Consensus 261 DVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~eV~d~p~s~if~QaeNrl~vrmA 340 (348)
T PLN02342 261 DVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNA 340 (348)
T ss_pred CEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCcCCCceecHHHhCCcccHHHHHHhccHHHHHH
Confidence 999999999998866555666889999999999999999999999999 799999999999999999999999999999
Q ss_pred HHHHHhcC
Q 026841 224 LLKLLLVG 231 (232)
Q Consensus 224 LL~~lLg~ 231 (232)
||++++|.
T Consensus 341 lL~~llg~ 348 (348)
T PLN02342 341 IMLHQLGK 348 (348)
T ss_pred HHHHHhcC
Confidence 99999874
No 6
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=3.1e-33 Score=258.11 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=126.0
Q ss_pred ceeccCC-CccccCccchh---------hhHH-HhhccCcccccccChHHH------H----HHHHhCCCEEEEEcCHHH
Q 026841 82 AVETQST-PSFTIGKKFQL---------DDVI-ESQQFDRDILNAIFEDDI------K----DYLTSQGVEWEESADLME 140 (232)
Q Consensus 82 ~~~~~~~-~~~~~~~k~~l---------~~li-~A~~~~~~~L~va~P~~i------~----e~l~~~G~~v~~~~D~~E 140 (232)
.++|.+. .+-..|+|+.+ +|++ .++.||++ +++++|+++ . ++++..|+++++++|++|
T Consensus 142 l~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e 220 (332)
T PRK04284 142 FLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMD-FHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDE 220 (332)
T ss_pred HHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCE-EEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 3466665 45567877776 4644 45788998 999999754 2 344568999999999999
Q ss_pred hhCcCCEEEEccccccccCCC-hhHHHHhhcCCccCHHHHHhcC-CCcEEeCCCC-------------------CCcccc
Q 026841 141 VASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVLRVMQ-KHAVVLHPLP-------------------RLDEIT 199 (232)
Q Consensus 141 Al~~ADVVYtdrwqsEr~~~~-~~e~~~~~~~YqVt~elL~~Ak-~dai~MHcLP-------------------Rg~EIs 199 (232)
|+++||||||++|++|+++.+ .+++.+++.+|+||+++|+.++ +|++|||||| ||+||+
T Consensus 221 a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP~~r~~e~~~~~~~~~~~~~rg~Ei~ 300 (332)
T PRK04284 221 GVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGKEIFEKYGLKEMEVT 300 (332)
T ss_pred HhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCCCCCCcccchhhhhhhhcCCCCcEEc
Confidence 999999999999999998654 4567789999999999999996 6999999999 478899
Q ss_pred ccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 200 VDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 200 ~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
++|+|+|+|+||+||+||+|+|||||.++++.
T Consensus 301 ~~V~d~~~S~i~~QaeNrl~~~kAvl~~~~~~ 332 (332)
T PRK04284 301 DEVFESKASVVFDEAENRMHTIKAVMVATLGE 332 (332)
T ss_pred HHHhCCccchHHHHHhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999863
No 7
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=2.5e-33 Score=256.02 Aligned_cols=147 Identities=29% Similarity=0.398 Sum_probs=126.6
Q ss_pred ceeccCCCccccCccchh----------hh-HHHhhccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEE
Q 026841 82 AVETQSTPSFTIGKKFQL----------DD-VIESQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQ 150 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~-li~A~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYt 150 (232)
.++|.+.++-..|+|+.| +| +..++.||++ +.+++|+++..- . -..+++++|++||+++||||||
T Consensus 144 l~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~-~~~~~P~~~~~~--~-~~~~~~~~d~~ea~~~aDvvyt 219 (305)
T PRK00856 144 LLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAE-VRLIAPPTLLPE--G-MPEYGVHTDLDEVIEDADVVMM 219 (305)
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEECCcccCcc--c-ccceEEECCHHHHhCCCCEEEE
Confidence 457777777678888877 35 5556889998 999999988411 0 0135789999999999999999
Q ss_pred ccccccccCCC-hhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHHH
Q 026841 151 TRIQRERFGER-TDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKL 227 (232)
Q Consensus 151 drwqsEr~~~~-~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~ 227 (232)
++||.|+++++ .+++.+++.+||||.++|+.+++|++|||||| ||.||+++|+++|+|+||+||+||+|+|||||.+
T Consensus 220 ~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~V~d~p~s~~f~QAeNrl~~~~All~~ 299 (305)
T PRK00856 220 LRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADGPQSVIFEQVTNGVAVRMAVLEL 299 (305)
T ss_pred CCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHHHhCCCcchHHHHHhcCHHHHHHHHHH
Confidence 99998887543 35677889999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HhcCC
Q 026841 228 LLVGW 232 (232)
Q Consensus 228 lLg~~ 232 (232)
++++|
T Consensus 300 ~l~~~ 304 (305)
T PRK00856 300 LLGGR 304 (305)
T ss_pred HhcCC
Confidence 99987
No 8
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=4.2e-33 Score=254.28 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=124.8
Q ss_pred ceeccCCCccccCccchh--------hh-HHHhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCHHHhh
Q 026841 82 AVETQSTPSFTIGKKFQL--------DD-VIESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~-li~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~~EAl 142 (232)
.++|.+..+=..|+|+.+ +| +..++.||++ +++++|+++. ++++..|+++++++|. +|+
T Consensus 135 l~Ti~e~~g~l~g~kva~vGD~~~v~~S~~~~~~~~g~~-v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~ 212 (302)
T PRK14805 135 FLTLAEQFGDVSKVKLAYVGDGNNVTHSLMYGAAILGAT-MTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAI 212 (302)
T ss_pred HHHHHHHhCCcCCcEEEEEcCCCccHHHHHHHHHHcCCE-EEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHH
Confidence 346665555567888877 45 4455789998 9999997763 2345679999999995 689
Q ss_pred CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHH
Q 026841 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYI 220 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~v 220 (232)
++|||||||+|++|+.+...+++.+++.+|+||.++|+.++++ +|||||| ||+||+++|+++|+|+||+||+||+|+
T Consensus 213 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~p~s~i~~QaeN~l~v 291 (302)
T PRK14805 213 EGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGEGSLILQQAENRMHA 291 (302)
T ss_pred CCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCCCcChHHHHHhccHHH
Confidence 9999999999999886554566778999999999999999887 9999999 999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 026841 221 RMALLKLLLV 230 (232)
Q Consensus 221 rmALL~~lLg 230 (232)
|||||.++++
T Consensus 292 r~All~~~l~ 301 (302)
T PRK14805 292 QNAVLVTLLS 301 (302)
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 9
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=99.98 E-value=8.3e-33 Score=252.12 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=124.8
Q ss_pred eeccCCCccccCccchh--------hh-HHHhhccCcccccccChHHHH------H----HHHhCCCEEEEEcCHHHhhC
Q 026841 83 VETQSTPSFTIGKKFQL--------DD-VIESQQFDRDILNAIFEDDIK------D----YLTSQGVEWEESADLMEVAS 143 (232)
Q Consensus 83 ~~~~~~~~~~~~~k~~l--------~~-li~A~~~~~~~L~va~P~~i~------e----~l~~~G~~v~~~~D~~EAl~ 143 (232)
.+|.+..+=..|.|..| +| +..++.||.+ ++++.|+++. + ++++.|+++++++|+++|++
T Consensus 137 ~Ti~e~~g~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~ 215 (304)
T TIGR00658 137 LTIIEHFGKLKGVKVVYVGDGNNVCNSLMLAGAKLGMD-VVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVK 215 (304)
T ss_pred HHHHHHhCCCCCcEEEEEeCCCchHHHHHHHHHHcCCE-EEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhC
Confidence 45544444456777766 45 4455789987 9999997763 2 24568999999999999999
Q ss_pred cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHH
Q 026841 144 KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIR 221 (232)
Q Consensus 144 ~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vr 221 (232)
+|||||+++|++++.+...+++.+++.+|+||.++|+.+++|++|||||| ||+||+++|+++|+|+||+||+||+|+|
T Consensus 216 ~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~~rg~Ei~~~V~d~p~s~~~~Qa~n~~~vr 295 (304)
T TIGR00658 216 GADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQ 295 (304)
T ss_pred CCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCCcchHHHHHhccHHHH
Confidence 99999999999887654446677899999999999999999999999999 7899999999999999999999999999
Q ss_pred HHHHHHHhc
Q 026841 222 MALLKLLLV 230 (232)
Q Consensus 222 mALL~~lLg 230 (232)
||||.++++
T Consensus 296 ~AlL~~~l~ 304 (304)
T TIGR00658 296 KAVMVALLG 304 (304)
T ss_pred HHHHHHHhC
Confidence 999999975
No 10
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=99.98 E-value=2.2e-32 Score=252.73 Aligned_cols=147 Identities=22% Similarity=0.279 Sum_probs=122.4
Q ss_pred ceeccCCCccc-cCccchh--------------hh-HHHhhccCcccccccCh-HHHH----------HHHHhCCCEEEE
Q 026841 82 AVETQSTPSFT-IGKKFQL--------------DD-VIESQQFDRDILNAIFE-DDIK----------DYLTSQGVEWEE 134 (232)
Q Consensus 82 ~~~~~~~~~~~-~~~k~~l--------------~~-li~A~~~~~~~L~va~P-~~i~----------e~l~~~G~~v~~ 134 (232)
.++|.+.++=. .|.|+.+ +| +..+++||++ ++++.| +++. +++++.|+++++
T Consensus 156 l~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~ 234 (335)
T PRK04523 156 ALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMD-VTLLCPTPDYILDERYMDWAEQNAAESGGSLTV 234 (335)
T ss_pred HHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCE-EEEECCchhhCCCHHHHHHHHHHHHHcCCeEEE
Confidence 34676665545 6888833 24 3444789998 999999 8762 245678999999
Q ss_pred EcCHHHhhCcCCEEEEccccccccCCC---hhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCch
Q 026841 135 SADLMEVASKCDVVYQTRIQRERFGER---TDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAA 209 (232)
Q Consensus 135 ~~D~~EAl~~ADVVYtdrwqsEr~~~~---~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~ 209 (232)
++|++||+++|||||||+||+||+..+ .+++.+++.+|+||.++|+.+ ++++|||||| ||+||+++|+++|+|+
T Consensus 235 ~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a-~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~ 313 (335)
T PRK04523 235 SHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKVTDAVMDSPNCI 313 (335)
T ss_pred EcCHHHHhCCCCEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCC-CCCEEECCCCCCCCCeeCHHHhCCCcch
Confidence 999999999999999999999975322 234567889999999999987 5899999999 9999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHhc
Q 026841 210 YFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 210 if~QAeNrL~vrmALL~~lLg 230 (232)
||+||+||+|+|||||++++.
T Consensus 314 if~QaeNrl~~r~AlL~~~l~ 334 (335)
T PRK04523 314 AIDEAENRLHVQKAIMAALAS 334 (335)
T ss_pred HHHHHhccHHHHHHHHHHHHh
Confidence 999999999999999999875
No 11
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=99.97 E-value=2.8e-32 Score=252.28 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=123.8
Q ss_pred eeccCCCcc--ccCccchh---------hh-HHHhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCHHH
Q 026841 83 VETQSTPSF--TIGKKFQL---------DD-VIESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLME 140 (232)
Q Consensus 83 ~~~~~~~~~--~~~~k~~l---------~~-li~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~~E 140 (232)
++|.+..+- ..|+|+.| +| +..++.||.+ +++++|+++. +++++.|+++++++|++|
T Consensus 143 ~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~e 221 (336)
T PRK03515 143 LTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLD-LRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAE 221 (336)
T ss_pred HHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCE-EEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHH
Confidence 455544421 45666666 45 4455788998 9999997763 345568999999999999
Q ss_pred hhCcCCEEEEccccccccCCC-hhHHHHhhcCCccCHHHHHhc-CCCcEEeCCCC--------------------CCccc
Q 026841 141 VASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVLRVM-QKHAVVLHPLP--------------------RLDEI 198 (232)
Q Consensus 141 Al~~ADVVYtdrwqsEr~~~~-~~e~~~~~~~YqVt~elL~~A-k~dai~MHcLP--------------------Rg~EI 198 (232)
|+++|||||||+|++|+++.+ .+++.+++.+||||.++|+.+ +++++|||||| ||+||
T Consensus 222 a~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP~~~~~~~~~~~~~~~~~~~~rg~EI 301 (336)
T PRK03515 222 GVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKMAEEYGLHGGMEV 301 (336)
T ss_pred HhCCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCCCCCCcccccccchhcccccCCCCEe
Confidence 999999999999999998554 355668899999999999985 79999999999 47899
Q ss_pred cccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 199 TVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 199 s~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
+++|+++|+|+||+||+||+|+|||||.++++.
T Consensus 302 s~eV~~~p~s~if~QaeNrl~~~kAvl~~~l~~ 334 (336)
T PRK03515 302 TDEVFESAHSIVFDQAENRLHTIKAVMVATLSK 334 (336)
T ss_pred CHHHhCCCcchHHHHHhhhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999863
No 12
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=99.97 E-value=2.8e-32 Score=252.42 Aligned_cols=149 Identities=19% Similarity=0.148 Sum_probs=121.2
Q ss_pred eeccCCCc---cccCccchh--------hhHH-HhhccCcccccccChHHH------HHH----HHhCCCEEEEEcCHHH
Q 026841 83 VETQSTPS---FTIGKKFQL--------DDVI-ESQQFDRDILNAIFEDDI------KDY----LTSQGVEWEESADLME 140 (232)
Q Consensus 83 ~~~~~~~~---~~~~~k~~l--------~~li-~A~~~~~~~L~va~P~~i------~e~----l~~~G~~v~~~~D~~E 140 (232)
.+|.+..+ -..|.|+.| +|++ .++.||.+ +++++|+++ .+. ++..|.++++++|++|
T Consensus 140 ~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e 218 (338)
T PRK02255 140 FTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMD-FVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDE 218 (338)
T ss_pred HHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCE-EEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHH
Confidence 45554442 245777776 4644 45789998 999999765 333 3357999999999999
Q ss_pred hhCcCCEEEEcccc-ccccCCChhHHHHhhc-CCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhh
Q 026841 141 VASKCDVVYQTRIQ-RERFGERTDLYEEARG-KYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKN 216 (232)
Q Consensus 141 Al~~ADVVYtdrwq-sEr~~~~~~e~~~~~~-~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeN 216 (232)
|+++||||||++|+ +++++...+++.+.+. .|+||.++|+.+++|++|||||| ||+||+++|+++|+|+||+||+|
T Consensus 219 av~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~V~d~p~s~if~Qa~N 298 (338)
T PRK02255 219 AVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMDSPRSICFDEAEN 298 (338)
T ss_pred HhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHHHhCCccchHHHHHhc
Confidence 99999999999999 4665433334445444 49999999999999999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCC
Q 026841 217 GLYIRMALLKLLLVGW 232 (232)
Q Consensus 217 rL~vrmALL~~lLg~~ 232 (232)
|+|+|||||.+++++|
T Consensus 299 rl~vrmAlL~~ll~~~ 314 (338)
T PRK02255 299 RLTAIRALLVYFMNPY 314 (338)
T ss_pred cHHHHHHHHHHHhccc
Confidence 9999999999999865
No 13
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=99.97 E-value=1.5e-32 Score=251.58 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=121.7
Q ss_pred ceeccCCCccccCccchh----------hh-HHHhhccCc-ccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEE
Q 026841 82 AVETQSTPSFTIGKKFQL----------DD-VIESQQFDR-DILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVY 149 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~-li~A~~~~~-~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVY 149 (232)
.++|++..+=..|.|..| +| +..++.||. + +++++|+++.-. ...+.++++++|++||+++|||||
T Consensus 145 l~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~-v~~~~P~~~~p~-~~~~~~~~~~~d~~ea~~~aDvvy 222 (310)
T PRK13814 145 LMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPE-IRLVGPSSLLPD-KVGNDSIKKFTELKPSLLNSDVIV 222 (310)
T ss_pred HHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCE-EEEeCCcccCcC-ccccceEEEEcCHHHHhCCCCEEE
Confidence 356666655556888877 35 555688998 6 999999987411 122457889999999999999999
Q ss_pred EccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHHH
Q 026841 150 QTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKL 227 (232)
Q Consensus 150 tdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~ 227 (232)
|++||.||++.. ..+.++..+|+||.++|+.+++|++|||||| ||+||+++|+++|+|+||+||+||+|+|||||.+
T Consensus 223 ~~~~~~er~~~~-~~~~~~~~~y~v~~~~l~~a~~~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~ 301 (310)
T PRK13814 223 TLRLQKERHDNS-VDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLEL 301 (310)
T ss_pred ECccccccccch-hHHHHhCCCcccCHHHHHhcCCCCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHH
Confidence 999999887542 3444555569999999999999999999999 8999999999999999999999999999999999
Q ss_pred HhcC
Q 026841 228 LLVG 231 (232)
Q Consensus 228 lLg~ 231 (232)
++++
T Consensus 302 ~l~~ 305 (310)
T PRK13814 302 FLLR 305 (310)
T ss_pred HHhh
Confidence 9874
No 14
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=99.97 E-value=3.5e-32 Score=251.31 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=126.1
Q ss_pred ceeccCCCccccCccchh---------hh-HHHhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCHHHh
Q 026841 82 AVETQSTPSFTIGKKFQL---------DD-VIESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEV 141 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l---------~~-li~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~~EA 141 (232)
.++|++..+-..|+|..| +| +..++.||.+ ++++.|+++. ++++..|.++++++|+++|
T Consensus 143 l~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea 221 (331)
T PRK02102 143 FMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMD-VRICAPKELWPEEELVALAREIAKETGAKITITEDPEEA 221 (331)
T ss_pred HHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHH
Confidence 345655555566777766 35 4455788987 9999997663 2345689999999999999
Q ss_pred hCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHH-hcCCCcEEeCCCCC-------------------Ccccccc
Q 026841 142 ASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLR-VMQKHAVVLHPLPR-------------------LDEITVD 201 (232)
Q Consensus 142 l~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~-~Ak~dai~MHcLPR-------------------g~EIs~e 201 (232)
+++||||||++|++++++.+.+++.+++.+|+||.++|+ .+++|++||||||| |+||+++
T Consensus 222 ~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP~~~~~~~~~~~~~~~~~~~rg~EI~~e 301 (331)
T PRK02102 222 VKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEIAEKYGLKGLEVTDE 301 (331)
T ss_pred hCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCCCCcccccchhhhhhhhcCCCceEecHH
Confidence 999999999999998765444677789999999999999 47999999999997 7799999
Q ss_pred ccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 202 VDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 202 V~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
|+++|+|+||+||+||+|+|||||.+++|.
T Consensus 302 v~d~p~s~if~Qa~Nrl~vr~AvL~~~l~~ 331 (331)
T PRK02102 302 VFESKYSIVFDEAENRMHTIKAVMVATLGD 331 (331)
T ss_pred HhCCCcchhHhHHhccHHHHHHHHHHHhcC
Confidence 999999999999999999999999999874
No 15
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=99.97 E-value=8.7e-33 Score=248.58 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=136.1
Q ss_pred hhcceeccCCCc-cccCccchh--------hhH-HHhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCH
Q 026841 79 QCQAVETQSTPS-FTIGKKFQL--------DDV-IESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADL 138 (232)
Q Consensus 79 ~~~~~~~~~~~~-~~~~~k~~l--------~~l-i~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~ 138 (232)
.|-+|+|.+.++ =.+|.|..| ||+ |+|+.||++ +.+++|+++. ++++++|.++++++|+
T Consensus 174 laD~LTi~E~f~ks~~glkvawiGD~NNvlhs~mia~ak~gih-~s~atPkg~e~d~div~~akq~a~eNgsk~eltnDp 252 (346)
T KOG1504|consen 174 LADLLTIIEHFGKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIH-FSCATPKGYEPDKDIVSKAKQAAEENGSKFELTNDP 252 (346)
T ss_pred HHHHHHHHHHHhccccccEEEEEccccHHHHHHHHHhhhcceE-EEecCCCCCCcchHHHHHHHHHHHhcCCEEEEecCh
Confidence 466788877763 367999998 454 566889998 9999997663 6777899999999999
Q ss_pred HHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCC-ccccccccCCCCchHHHHHhhc
Q 026841 139 MEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRL-DEITVDVDADPRAAYFRQAKNG 217 (232)
Q Consensus 139 ~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg-~EIs~eV~dsp~S~if~QAeNr 217 (232)
.||+.+|||||||+|.+||++++.+.+.+.|.+||||.++|+.|+|++.|||||||. +||+++|+++|+|++|+|||||
T Consensus 253 ~eA~~~anvlvtDtwiSMGqe~ekearlkaFqGfQV~~el~kvA~~~~~FmHCLPr~~eEVsdeVfy~~~SiVF~eAENR 332 (346)
T KOG1504|consen 253 LEAVIGANVLVTDTWISMGQEDEKEARLKAFQGFQVTEELMKVAGPKAKFMHCLPRHPEEVSDEVFYGPYSIVFPEAENR 332 (346)
T ss_pred HHhhcCCcEEEEehhhhcchHHHHHHHHHhhcCceehHHHHhhhCCCceEeeccCCChhhccCceeeccceeecchhhhh
Confidence 999999999999999999999888888899999999999999999999999999964 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 026841 218 LYIRMALLKLLLVG 231 (232)
Q Consensus 218 L~vrmALL~~lLg~ 231 (232)
+|++||+|..+|+.
T Consensus 333 ~~a~mavm~~ll~n 346 (346)
T KOG1504|consen 333 KWAQMAVMLHLLGN 346 (346)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 16
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=99.97 E-value=5.2e-32 Score=247.03 Aligned_cols=147 Identities=22% Similarity=0.273 Sum_probs=125.6
Q ss_pred ceeccCCCccccCccchh--------hh-HHHhhccCcccccccChHHHH------HH-HHhCCCEEEEEcCHHHhhCcC
Q 026841 82 AVETQSTPSFTIGKKFQL--------DD-VIESQQFDRDILNAIFEDDIK------DY-LTSQGVEWEESADLMEVASKC 145 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~-li~A~~~~~~~L~va~P~~i~------e~-l~~~G~~v~~~~D~~EAl~~A 145 (232)
..+|.+..+-..|+|..| +| +..++.||.+ +.++.|+++. +. +++.|+++++++|++||+++|
T Consensus 140 l~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~a 218 (304)
T PRK00779 140 LLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFD-LRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGA 218 (304)
T ss_pred HHHHHHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 345655555566777766 45 4455789988 9999997763 22 566899999999999999999
Q ss_pred CEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHH
Q 026841 146 DVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMA 223 (232)
Q Consensus 146 DVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmA 223 (232)
|||||++|++++.+....++.+++.+|+||.++|+.++++++|||||| ||+||+++|+++|+|+||+||+||+|+|||
T Consensus 219 Dvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~~p~s~~~~Qa~n~~~vrmA 298 (304)
T PRK00779 219 DVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKA 298 (304)
T ss_pred CEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHHHhCCCcchHHHHHhccHHHHHH
Confidence 999999999988754445677889999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHh
Q 026841 224 LLKLLL 229 (232)
Q Consensus 224 LL~~lL 229 (232)
||.+++
T Consensus 299 lL~~~l 304 (304)
T PRK00779 299 LLAWLL 304 (304)
T ss_pred HHHHhC
Confidence 999875
No 17
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=99.97 E-value=8.3e-32 Score=249.07 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=123.6
Q ss_pred ceeccCCCc--cccCccchh---------hh-HHHhhccCcccccccChHHH------H----HHHHhCCCEEEEEcCHH
Q 026841 82 AVETQSTPS--FTIGKKFQL---------DD-VIESQQFDRDILNAIFEDDI------K----DYLTSQGVEWEESADLM 139 (232)
Q Consensus 82 ~~~~~~~~~--~~~~~k~~l---------~~-li~A~~~~~~~L~va~P~~i------~----e~l~~~G~~v~~~~D~~ 139 (232)
+++|.+..+ -..|.|..| +| +..++.||.+ ++++.|+++ . ++++..|+++++++|++
T Consensus 142 l~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ 220 (334)
T PRK12562 142 LLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLD-LRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIA 220 (334)
T ss_pred HHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCE-EEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHH
Confidence 345655442 245777766 34 5556889998 999999764 2 34456799999999999
Q ss_pred HhhCcCCEEEEccccccccCCC-hhHHHHhhcCCccCHHHHHhc-CCCcEEeCCCCC--------------------Ccc
Q 026841 140 EVASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVLRVM-QKHAVVLHPLPR--------------------LDE 197 (232)
Q Consensus 140 EAl~~ADVVYtdrwqsEr~~~~-~~e~~~~~~~YqVt~elL~~A-k~dai~MHcLPR--------------------g~E 197 (232)
||+++|||||||+|++|++..+ ..++.+++.+||||.++|+.+ ++|++||||||+ |+|
T Consensus 221 ~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~~~~~~~~~~~~~~~~~~~~Rg~E 300 (334)
T PRK12562 221 AGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAKEFGLHGGME 300 (334)
T ss_pred HHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCCCCcccccchhhhhhhccCCCCcE
Confidence 9999999999999999987433 356668899999999999997 799999999994 899
Q ss_pred ccccccCCCCchHHHHHhhcHHHHHHHHHHHhc
Q 026841 198 ITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 198 Is~eV~dsp~S~if~QAeNrL~vrmALL~~lLg 230 (232)
|+++|+++|+|+||+||+||+|+|||||.+++.
T Consensus 301 it~eV~d~p~S~if~QaeNrl~~~kAvl~~~~~ 333 (334)
T PRK12562 301 VTDEVFESPASIVFDQAENRMHTIKAVMVATLA 333 (334)
T ss_pred eCHHHhCCCcchHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999975
No 18
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=99.97 E-value=9.2e-32 Score=248.42 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=123.3
Q ss_pred eeccCCCc-cccCccchh---------hh-HHHhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCHHHh
Q 026841 83 VETQSTPS-FTIGKKFQL---------DD-VIESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEV 141 (232)
Q Consensus 83 ~~~~~~~~-~~~~~k~~l---------~~-li~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~~EA 141 (232)
++|.+..+ -..|+|..| +| +..++.||++ +++++|+++. ++++..|+++++++|+++|
T Consensus 144 ~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~-v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a 222 (334)
T PRK01713 144 LTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMD-VRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKA 222 (334)
T ss_pred HHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCE-EEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHH
Confidence 45655444 246777766 45 4556889998 9999998763 3445689999999999999
Q ss_pred hCcCCEEEEccccccccCCC-hhHHHHhhcCCccCHHHHHhc-CCCcEEeCCCC---------------------CCccc
Q 026841 142 ASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVLRVM-QKHAVVLHPLP---------------------RLDEI 198 (232)
Q Consensus 142 l~~ADVVYtdrwqsEr~~~~-~~e~~~~~~~YqVt~elL~~A-k~dai~MHcLP---------------------Rg~EI 198 (232)
+++|||||||+|++|+...+ .+++.+++.+|+||.++|+.+ ++|++|||||| ||+||
T Consensus 223 ~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~~~~~~~~~~~~~~~~~~~~~rg~Ei 302 (334)
T PRK01713 223 VKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGRQIAEKYPELANGIEV 302 (334)
T ss_pred hCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCCCCCccccccccchhhhcccCCCcEE
Confidence 99999999999999876432 356667999999999999997 79999999999 47899
Q ss_pred cccccCCCCchHHHHHhhcHHHHHHHHHHHhc
Q 026841 199 TVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 199 s~eV~dsp~S~if~QAeNrL~vrmALL~~lLg 230 (232)
+++|+++|+|+||+||+||+|+|||||.+++.
T Consensus 303 ~~~V~d~~~s~i~~QaeNrl~~~kAvl~~~~~ 334 (334)
T PRK01713 303 TEDVFESPMNIAFEQAENRMHTIKAVMVASLA 334 (334)
T ss_pred CHHHhCCCcccHHHHHhchHHHHHHHHHHHhC
Confidence 99999999999999999999999999999863
No 19
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=99.97 E-value=5.1e-32 Score=247.90 Aligned_cols=146 Identities=20% Similarity=0.212 Sum_probs=118.4
Q ss_pred ceeccCCCcc--ccCccchh--------hh-HHHhhccCcccccccChHHHH--------HHHHhCCCEEEEEcCHHHhh
Q 026841 82 AVETQSTPSF--TIGKKFQL--------DD-VIESQQFDRDILNAIFEDDIK--------DYLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~--~~~~k~~l--------~~-li~A~~~~~~~L~va~P~~i~--------e~l~~~G~~v~~~~D~~EAl 142 (232)
..+|.+..+. ..|+|..+ +| +..++.||++ +++++|+++. +.+++.| .+++++|+++|+
T Consensus 139 l~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~~~g-~i~~~~d~~~av 216 (311)
T PRK14804 139 IMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIH-LTLVTPIAAKENIHAQTVERAKKKG-TLSWEMNLHKAV 216 (311)
T ss_pred HHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEECCCCccHHHHHHHHHHHHhcC-CeEEEeCHHHHh
Confidence 3567666653 47888887 46 4555788998 9999997642 2344455 788899999999
Q ss_pred CcCCEEEEccccccccC-C-----ChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHH
Q 026841 143 SKCDVVYQTRIQRERFG-E-----RTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQA 214 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~-~-----~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QA 214 (232)
++|||||||+|++|+.. + ..+++.+++.+|+||.++|++ ++++|||||| ||+||+++|+++|+|+||+||
T Consensus 217 ~~aDvvy~d~w~~~~~~~~~~~~~~~~~r~~~~~~y~v~~elm~~--~~~~vmH~lP~~Rg~Ei~~~V~d~p~s~if~Qa 294 (311)
T PRK14804 217 SHADYVYTDTWLDMEFFNDPSYADKKKQRMELMMPYQINSSLMEK--TNAKVMHDMPIHAGYEITREVVLSDRSIIFQQA 294 (311)
T ss_pred CCCCEEEeeeeEECcccCccchHHHHHHHHHhccCCeECHHHHhC--CCCeEeCCCCCCCCceeCHHHhCCCcchHHHHH
Confidence 99999999999987642 1 123344778899999999984 5799999999 799999999999999999999
Q ss_pred hhcHHHHHHHHHHHhcC
Q 026841 215 KNGLYIRMALLKLLLVG 231 (232)
Q Consensus 215 eNrL~vrmALL~~lLg~ 231 (232)
+||+|+|||||.+++++
T Consensus 295 eN~l~~r~AvL~~~l~~ 311 (311)
T PRK14804 295 ENRLDAQKAVILKLLEN 311 (311)
T ss_pred hcCHHHHHHHHHHHhcC
Confidence 99999999999999863
No 20
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=99.97 E-value=2.1e-31 Score=251.11 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=118.2
Q ss_pred ceeccCCCcc---ccCccchh---------------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEE
Q 026841 82 AVETQSTPSF---TIGKKFQL---------------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEW 132 (232)
Q Consensus 82 ~~~~~~~~~~---~~~~k~~l---------------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v 132 (232)
.++|.+..+= ..|+|+.+ +|++.+ +.||++ ++++.|+++ .+ .+++.|.++
T Consensus 172 l~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~-v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i 250 (395)
T PRK07200 172 LLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMD-VTLAHPEGYDLMPEVVEVAKKNAKASGGSF 250 (395)
T ss_pred HHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCE-EEEECCCccCCCHHHHHHHHHHHHHcCCeE
Confidence 3566555442 45667762 465555 889998 999999765 12 345689999
Q ss_pred EEEcCHHHhhCcCCEEEEccccccccCC-------------------ChhHHHHhhcCCccCHHHHHhcCCC-cEEeCCC
Q 026841 133 EESADLMEVASKCDVVYQTRIQRERFGE-------------------RTDLYEEARGKYIVDQNVLRVMQKH-AVVLHPL 192 (232)
Q Consensus 133 ~~~~D~~EAl~~ADVVYtdrwqsEr~~~-------------------~~~e~~~~~~~YqVt~elL~~Ak~d-ai~MHcL 192 (232)
++++|++||+++|||||||+|++++... +..++.+++.+||||.++|+.++++ ++|||||
T Consensus 251 ~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcL 330 (395)
T PRK07200 251 RQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCL 330 (395)
T ss_pred EEEcCHHHHhCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCC
Confidence 9999999999999999999999766321 1123467899999999999999984 9999999
Q ss_pred C--C------CccccccccCCCCchHHHHHhhcHHHHHHHHHH
Q 026841 193 P--R------LDEITVDVDADPRAAYFRQAKNGLYIRMALLKL 227 (232)
Q Consensus 193 P--R------g~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~ 227 (232)
| | |+||+++|+|+|+|+||+||+||+|+|||||..
T Consensus 331 Pa~r~~~~~rg~EIt~eV~d~p~S~if~QAeNrlh~~~Avl~~ 373 (395)
T PRK07200 331 PADISGVSCKEGEVTESVFDRYRIALYKEASWKPYIIAAMIFL 373 (395)
T ss_pred CCCCcccCCCCCEECHHHhCCCcchHHHHhcchHHHHHHHHHH
Confidence 9 3 999999999999999999999999999999987
No 21
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=99.97 E-value=7e-31 Score=249.75 Aligned_cols=159 Identities=28% Similarity=0.488 Sum_probs=131.1
Q ss_pred cccccccchh------h----cceeccCCCc----cccCccchh----------hhHHHh-hcc-CcccccccChHHH--
Q 026841 70 QQLPLRNSIQ------C----QAVETQSTPS----FTIGKKFQL----------DDVIES-QQF-DRDILNAIFEDDI-- 121 (232)
Q Consensus 70 ~~~~~~~~~~------~----~~~~~~~~~~----~~~~~k~~l----------~~li~A-~~~-~~~~L~va~P~~i-- 121 (232)
...|+-|..- | -.++|.+.++ -..|+|+.| +|++.+ +.+ |++ +++++|+++
T Consensus 203 s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~-v~l~~P~~~~~ 281 (429)
T PRK11891 203 TNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLK-FTLVSPPTLEM 281 (429)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCE-EEEECCCcccc
Confidence 4567666652 1 2356666543 146778776 576666 555 998 999999776
Q ss_pred ----HHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHh-cCCCcEEeCCCCCC-
Q 026841 122 ----KDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRV-MQKHAVVLHPLPRL- 195 (232)
Q Consensus 122 ----~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~-Ak~dai~MHcLPRg- 195 (232)
.+.+++.|+.+++++|++||+++||||||++||.|++.++ .+++++.+|+||.++|+. +++|++|||||||+
T Consensus 282 ~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q~er~~~~--~~~~~~~~y~vt~ell~~~ak~dai~MHcLPr~~ 359 (429)
T PRK11891 282 PAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFADE--SFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDS 359 (429)
T ss_pred CHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCchhhcccCH--HHHHhccCCcCCHHHHhCccCCCcEEECCCCCCC
Confidence 2456678999999999999999999999999998887532 346788899999999999 89999999999974
Q ss_pred ----ccccccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 196 ----DEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 196 ----~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
+||+++|+++|+|+||+||+||+|+|||||.++++.
T Consensus 360 R~~g~EIs~eV~d~p~S~if~QAeNrl~vr~AvL~~llg~ 399 (429)
T PRK11891 360 RPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGV 399 (429)
T ss_pred CCCCcEeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999874
No 22
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=99.97 E-value=2.7e-30 Score=239.22 Aligned_cols=138 Identities=30% Similarity=0.474 Sum_probs=116.7
Q ss_pred ccCccchh----------hhHHHh-h-ccCcccccccChHHH------HHHHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 92 TIGKKFQL----------DDVIES-Q-QFDRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 92 ~~~~k~~l----------~~li~A-~-~~~~~~L~va~P~~i------~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
..|.|+.+ +|++.+ . .+|.+ ++++.|+++ .+.++..|.++++++|++||+++||||||++.
T Consensus 157 l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 157 IDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVS-FTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRI 235 (338)
T ss_pred cCCCEEEEECcCCCCchHHHHHHHHHHhcCCE-EEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEcCc
Confidence 45777776 576643 3 55887 999999766 34566789999999999999999999999999
Q ss_pred cccccCCChhHHHHhhcCCccCHHHHH-hcCCCcEEeCCCCC-----CccccccccCCCCchHHHHHhhcHHHHHHHHHH
Q 026841 154 QRERFGERTDLYEEARGKYIVDQNVLR-VMQKHAVVLHPLPR-----LDEITVDVDADPRAAYFRQAKNGLYIRMALLKL 227 (232)
Q Consensus 154 qsEr~~~~~~e~~~~~~~YqVt~elL~-~Ak~dai~MHcLPR-----g~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~ 227 (232)
|.|++++. +++..+..+|+||.++|+ .+++|++||||||| |+||+++|+++|+|+||+||+||+|+|||||.+
T Consensus 236 q~e~~~~~-~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r~~Ei~~~V~d~p~s~~f~QAeNrl~~r~AlL~~ 314 (338)
T PRK08192 236 QEERFPSQ-EEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSHPNLAIFRQADNGLLIRMALFAL 314 (338)
T ss_pred ccccccch-HHHHHhhhccccCHHHHHhhhCCCCEEECCCCCCCCCCCcEeCHHHhCCccchHHHHHhcCHHHHHHHHHH
Confidence 98886432 345556677999999994 69999999999995 599999999999999999999999999999999
Q ss_pred HhcC
Q 026841 228 LLVG 231 (232)
Q Consensus 228 lLg~ 231 (232)
+++.
T Consensus 315 ll~~ 318 (338)
T PRK08192 315 TLGV 318 (338)
T ss_pred HhCC
Confidence 9864
No 23
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=99.97 E-value=2.1e-30 Score=241.68 Aligned_cols=125 Identities=16% Similarity=0.229 Sum_probs=106.6
Q ss_pred HHHhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCHHHhhCcCCEEEEcccccccc----------CC-
Q 026841 102 VIESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERF----------GE- 160 (232)
Q Consensus 102 li~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~----------~~- 160 (232)
+..+++||.+ ++++.|+++. +++++.|+++++++|++||+++|||||||+|+++++ .+
T Consensus 194 ~~~~~~~G~~-v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~ 272 (357)
T TIGR03316 194 IGLMTRFGMD-VTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDT 272 (357)
T ss_pred HHHHHHcCCE-EEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCeeccccccccchhcccchh
Confidence 4556889998 9999997652 245578999999999999999999999999999762 00
Q ss_pred Ch--------hHHHHhhcCCccCHHHHHhcC-CCcEEeCCCC---CCc-----cccccccCCCCchHHHHHhhcHHHHHH
Q 026841 161 RT--------DLYEEARGKYIVDQNVLRVMQ-KHAVVLHPLP---RLD-----EITVDVDADPRAAYFRQAKNGLYIRMA 223 (232)
Q Consensus 161 ~~--------~e~~~~~~~YqVt~elL~~Ak-~dai~MHcLP---Rg~-----EIs~eV~dsp~S~if~QAeNrL~vrmA 223 (232)
.. .++.+++.+|+||.++|+.++ ++++|||||| ||+ ||+++|+|+|+|+||+||+||+|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP~~~Rg~~~~~~Eit~~V~d~p~s~if~QAeNrl~~r~A 352 (357)
T TIGR03316 273 EGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLPADIRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYTIAA 352 (357)
T ss_pred hhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCCCCCccCcccccccccHHHhCCCccHHHHHHhhhHHHHHH
Confidence 00 123357899999999999998 9999999999 677 999999999999999999999999999
Q ss_pred HHHH
Q 026841 224 LLKL 227 (232)
Q Consensus 224 LL~~ 227 (232)
||.+
T Consensus 353 lL~~ 356 (357)
T TIGR03316 353 MIAA 356 (357)
T ss_pred hhcc
Confidence 9975
No 24
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=232.26 Aligned_cols=149 Identities=21% Similarity=0.296 Sum_probs=120.4
Q ss_pred ceeccCCCcc-ccCccchh----------hhHHH-hhccC-cccccccChHHHH------HHHHhCCCEEEEEcCHHHhh
Q 026841 82 AVETQSTPSF-TIGKKFQL----------DDVIE-SQQFD-RDILNAIFEDDIK------DYLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~-~~~~k~~l----------~~li~-A~~~~-~~~L~va~P~~i~------e~l~~~G~~v~~~~D~~EAl 142 (232)
.++|.+..+. ..|.|+.| +|++. ++.|| ++ ++++.|+++. +.++++|..+++++|++||+
T Consensus 161 l~TI~E~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~-v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav 239 (525)
T PRK13376 161 EFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVK-VDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYL 239 (525)
T ss_pred HHHHHHHcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcE-EEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 4566666553 46778776 35444 46688 66 9999997772 45667899999999999999
Q ss_pred CcCC---EEEEccccccccCCCh-hHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCC-CCchHHHHHh
Q 026841 143 SKCD---VVYQTRIQRERFGERT-DLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDAD-PRAAYFRQAK 215 (232)
Q Consensus 143 ~~AD---VVYtdrwqsEr~~~~~-~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~ds-p~S~if~QAe 215 (232)
++|| ++|++|+|.|++++.. ++..+++.+|+||.++|+.++++++|||||| ||+|+.++++|+ |+++||+||+
T Consensus 240 ~~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcLPa~Rg~Ee~~~vvD~~~~s~~f~QAe 319 (525)
T PRK13376 240 SQKDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPLPRHKVYPTIPTFLDTLPLNGWETQAI 319 (525)
T ss_pred ccCCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCCCCCCCCceeCHhhcCCcceeHHHHHh
Confidence 9999 5799999999987542 3455677899999999999999999999999 787555555555 7999999999
Q ss_pred hcHHHHHHHHHHHhcC
Q 026841 216 NGLYIRMALLKLLLVG 231 (232)
Q Consensus 216 NrL~vrmALL~~lLg~ 231 (232)
||+|+|||||++++++
T Consensus 320 Ngl~vrmAlL~~ll~~ 335 (525)
T PRK13376 320 NGYWVRIVLLSMLGGA 335 (525)
T ss_pred ccHHHHHHHHHHHhCc
Confidence 9999999999999874
No 25
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=99.94 E-value=4.2e-27 Score=215.54 Aligned_cols=148 Identities=32% Similarity=0.500 Sum_probs=121.5
Q ss_pred ceeccCCCccccCccchh----------hhHHHh-hccCcccccccChHHH------HHHHHhCCCEEEEEcCHHHhhCc
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIES-QQFDRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASK 144 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~A-~~~~~~~L~va~P~~i------~e~l~~~G~~v~~~~D~~EAl~~ 144 (232)
..+|.+..+...|+|..+ +|.+.| +.||.+ +.++-|+.+ .+.++..|..+.+.+..+|++++
T Consensus 146 l~TI~~~~G~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~-v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~ 224 (316)
T COG0540 146 LYTIREEFGRLDGLKIAIVGDLKHSRVAHSNIQALKRFGAE-VYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEE 224 (316)
T ss_pred HHHHHHHhCCcCCcEEEEEccccchHHHHHHHHHHHHcCCE-EEEECchHhCCchhHHHHHhhcCceEEEecchhhhhcc
Confidence 568888899899999987 466666 778876 999888666 35666777777777777779999
Q ss_pred CCEEEEccccccccCCChhHHHHhhcCCccCHHHHHh-cCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHH
Q 026841 145 CDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRV-MQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIR 221 (232)
Q Consensus 145 ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~-Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vr 221 (232)
+||||++|+|+||+.+.. ++.+....|+++...+++ +|++++|||||| |++||+++|+++|+|.||+||+||+++|
T Consensus 225 ~DVl~~lRvQ~ER~~~~~-~~s~~~~y~~~~~~~~~~~~k~~~ivmHP~PvnR~~EI~~~v~~~p~s~~f~Q~~nGV~vR 303 (316)
T COG0540 225 ADVLYMLRVQKERFNDPE-EYSKVKEYYKLYGLTLERLAKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVR 303 (316)
T ss_pred CCEEEeehhhHhhcCCcc-chHHHHHHHHHHHHHHHhhcCCCcEEECCCCccCCCcCchhhhcchHHHHHHHHHcCHHHH
Confidence 999999999999997653 232233344455555555 999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 026841 222 MALLKLLLVG 231 (232)
Q Consensus 222 mALL~~lLg~ 231 (232)
||||..++++
T Consensus 304 MAlL~~~l~~ 313 (316)
T COG0540 304 MALLELLLGG 313 (316)
T ss_pred HHHHHHHhcc
Confidence 9999999874
No 26
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=85.75 E-value=2.5 Score=34.97 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=39.3
Q ss_pred hhhhHHHhhccCcccccccCh-------HHHHHHHHhCCCEEEEEc----CHHHhhCcCCEEEEcc
Q 026841 98 QLDDVIESQQFDRDILNAIFE-------DDIKDYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 98 ~l~~li~A~~~~~~~L~va~P-------~~i~e~l~~~G~~v~~~~----D~~EAl~~ADVVYtdr 152 (232)
...++++...++++|-++++- .-+-..+.+.|+.++..+ |+++++++||+|.+-+
T Consensus 14 a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 14 AVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 334555555555555555554 222356677899999998 9999999999999887
No 27
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=82.37 E-value=9.5 Score=32.69 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=30.5
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccc
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITV 200 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~ 200 (232)
.+++|+++++|+++|.+ +. .=.|+.+.|+.+|.++++.--.=-+.||+-
T Consensus 70 ~~~~~a~~~adi~vtaT----G~------------~~vi~~e~~~~mkdgail~n~Gh~d~Eid~ 118 (162)
T PF00670_consen 70 MTLEEALRDADIFVTAT----GN------------KDVITGEHFRQMKDGAILANAGHFDVEIDV 118 (162)
T ss_dssp E-HHHHTTT-SEEEE-S----SS------------SSSB-HHHHHHS-TTEEEEESSSSTTSBTH
T ss_pred cCHHHHHhhCCEEEECC----CC------------ccccCHHHHHHhcCCeEEeccCcCceeEee
Confidence 35789999999999987 11 125788888888888887644444455543
No 28
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=74.28 E-value=9 Score=36.21 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=41.1
Q ss_pred cCCCccccCccchhhhHHHhhccCcccccccCh---HHHHHHHH----------------hCCCEEEEEcCHHHhhCcCC
Q 026841 86 QSTPSFTIGKKFQLDDVIESQQFDRDILNAIFE---DDIKDYLT----------------SQGVEWEESADLMEVASKCD 146 (232)
Q Consensus 86 ~~~~~~~~~~k~~l~~li~A~~~~~~~L~va~P---~~i~e~l~----------------~~G~~v~~~~D~~EAl~~AD 146 (232)
++-|+|++=..|.+.++++|..-|- -.-++| +.+.+.++ ..|++ +++|-.||++++|
T Consensus 68 ~~~~~~~v~d~fd~~~v~~ah~~g~--~e~vmp~ir~~v~~~a~~~pkppk~~ihf~~pEdaGvk--VtsDD~EAvk~ae 143 (342)
T PRK00961 68 AEEPGFVVIDDFDYKEVMEAHLAGN--PEKVMPKIREKVKAKAKELPKPPKGCIHFVHPEDLGLK--VTTDDREAVADAD 143 (342)
T ss_pred cCCCCeEEeecCCHHHHHHHHhcCC--HHHhhHHHHHHHHHHHhhCCCCCccceeecCHHHcCce--EecCcHHHhcCCC
Confidence 4567888888999999999986542 122233 12222222 33445 5677789999999
Q ss_pred EEEEcc
Q 026841 147 VVYQTR 152 (232)
Q Consensus 147 VVYtdr 152 (232)
++++=.
T Consensus 144 i~I~ft 149 (342)
T PRK00961 144 IVITWL 149 (342)
T ss_pred EEEEec
Confidence 998744
No 29
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=72.40 E-value=5.8 Score=36.54 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=31.5
Q ss_pred cCcccccccCh-----HHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEcccccc
Q 026841 108 FDRDILNAIFE-----DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRE 156 (232)
Q Consensus 108 ~~~~~L~va~P-----~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsE 156 (232)
++.+.++|.-+ +.+.+.++..|..+...+|+++|+++||||+|-+-..+
T Consensus 151 ~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 151 RPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp S--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SS
T ss_pred CCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCC
Confidence 45555666655 23334455568999999999999999999999886543
No 30
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=70.80 E-value=7.1 Score=35.90 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=39.0
Q ss_pred CccchhhhHHHh--hccCcccccccCh--HH---HHHHHHh-CCCEEEEEcCHHHhhCcCCEEEEcccccc
Q 026841 94 GKKFQLDDVIES--QQFDRDILNAIFE--DD---IKDYLTS-QGVEWEESADLMEVASKCDVVYQTRIQRE 156 (232)
Q Consensus 94 ~~k~~l~~li~A--~~~~~~~L~va~P--~~---i~e~l~~-~G~~v~~~~D~~EAl~~ADVVYtdrwqsE 156 (232)
|-..|=.--+.| ..++++.++|.=+ +. +.+.+++ .|.+++..++++|++.+||||.|.+-.++
T Consensus 124 GaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 124 GSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred CCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 555554322222 2345555555533 22 2233333 48888899999999999999999886543
No 31
>PRK06823 ornithine cyclodeaminase; Validated
Probab=70.04 E-value=7.1 Score=36.21 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=27.5
Q ss_pred HHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccc
Q 026841 122 KDYLTSQGVEWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 122 ~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqs 155 (232)
.+.+++.|.+++..++.++++++||||.|.+-.+
T Consensus 170 ~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 170 RQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred HHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC
Confidence 3445556888888999999999999999988543
No 32
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=69.39 E-value=7.3 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=22.5
Q ss_pred HHHHhCC--CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
.++++.| .+++.+.|.+||++|||+|++.-
T Consensus 50 ~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~i 81 (183)
T PF02056_consen 50 RMVEEAGADLKVEATTDRREALEGADFVINQI 81 (183)
T ss_dssp HHHHHCTTSSEEEEESSHHHHHTTESEEEE--
T ss_pred HHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEe
Confidence 3445555 46677999999999999998843
No 33
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=68.58 E-value=7.1 Score=37.84 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=24.4
Q ss_pred HHHHhCC--CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
.++++.| .+++.+.|.+||++|||+|++.-
T Consensus 51 ~~~~~~g~~~~v~~ttD~~~Al~gADfVi~~i 82 (425)
T cd05197 51 RYVEEVGADIKFEKTMDLEDAIIDADFVINQF 82 (425)
T ss_pred HHHHhhCCCeEEEEeCCHHHHhCCCCEEEEee
Confidence 4455666 56888999999999999998765
No 34
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.79 E-value=9.4 Score=34.84 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=37.0
Q ss_pred hhccCcccccccChHHH---HHHHHhCCCE-----EEEEcCHHHhhCcCCEEEEcc
Q 026841 105 SQQFDRDILNAIFEDDI---KDYLTSQGVE-----WEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 105 A~~~~~~~L~va~P~~i---~e~l~~~G~~-----v~~~~D~~EAl~~ADVVYtdr 152 (232)
.+-||+.-|+++-|... ..++...|++ -.+.++++|||.|+|+||.++
T Consensus 25 MKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~v~aTt 80 (242)
T COG0565 25 MKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCDLVVATT 80 (242)
T ss_pred HHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCCEEEEec
Confidence 36689999999999653 3444455542 257899999999999999999
No 35
>PRK07589 ornithine cyclodeaminase; Validated
Probab=65.37 E-value=9.8 Score=35.99 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=38.7
Q ss_pred cCccchhhhHHHh--hccCcccccccCh--H---HHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 93 IGKKFQLDDVIES--QQFDRDILNAIFE--D---DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 93 ~~~k~~l~~li~A--~~~~~~~L~va~P--~---~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
.|-..|=...++| ..+.+..++|.-. + .+.+.+++.|.++...+|+++++++||||.|.+-
T Consensus 135 iGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 135 IGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred ECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC
Confidence 3666665433333 2234444555333 2 3334444567888889999999999999999774
No 36
>PLN02828 formyltetrahydrofolate deformylase
Probab=63.29 E-value=38 Score=31.15 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=54.1
Q ss_pred cCccchhhhHHHhhccCcccccccC----hH-----HHHHHHHhCCCEEEEEc---------CHHHhhCcCCEEEEcccc
Q 026841 93 IGKKFQLDDVIESQQFDRDILNAIF----ED-----DIKDYLTSQGVEWEESA---------DLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 93 ~~~k~~l~~li~A~~~~~~~L~va~----P~-----~i~e~l~~~G~~v~~~~---------D~~EAl~~ADVVYtdrwq 154 (232)
-|..=-|.+|+.+.+-|--...|++ ++ ++++.+++.|+.+.... .+.+.++++|+|+.-+|-
T Consensus 78 Sg~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym 157 (268)
T PLN02828 78 SKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYM 157 (268)
T ss_pred cCCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeeh
Confidence 3666677899998765532122222 22 57788899999765321 223556678988887752
Q ss_pred ccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC--CC
Q 026841 155 RERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP--LP 193 (232)
Q Consensus 155 sEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc--LP 193 (232)
..+.+++++..+..++=+|| ||
T Consensus 158 -----------------~IL~~~~l~~~~~riINIHpSlLP 181 (268)
T PLN02828 158 -----------------QILSGNFLKGYGKDIINIHHGLLP 181 (268)
T ss_pred -----------------HhCCHHHHhhccCCEEEecCccCC
Confidence 24677777777777787887 66
No 37
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=62.65 E-value=19 Score=30.06 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=46.3
Q ss_pred hhccCcccccccChHHHHHH-HHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcC
Q 026841 105 SQQFDRDILNAIFEDDIKDY-LTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQ 183 (232)
Q Consensus 105 A~~~~~~~L~va~P~~i~e~-l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak 183 (232)
++.||+. +.+.-|..-... ....|.. ..+++|.++.+|+|....=-.+ .....||.+.++.+|
T Consensus 55 l~~fG~~-V~~~d~~~~~~~~~~~~~~~---~~~l~ell~~aDiv~~~~plt~------------~T~~li~~~~l~~mk 118 (178)
T PF02826_consen 55 LKAFGMR-VIGYDRSPKPEEGADEFGVE---YVSLDELLAQADIVSLHLPLTP------------ETRGLINAEFLAKMK 118 (178)
T ss_dssp HHHTT-E-EEEEESSCHHHHHHHHTTEE---ESSHHHHHHH-SEEEE-SSSST------------TTTTSBSHHHHHTST
T ss_pred eecCCce-eEEecccCChhhhcccccce---eeehhhhcchhhhhhhhhcccc------------ccceeeeeeeeeccc
Confidence 3457765 544444333222 3445553 4699999999999987662211 124679999999999
Q ss_pred CCcEEeCCCCCC
Q 026841 184 KHAVVLHPLPRL 195 (232)
Q Consensus 184 ~dai~MHcLPRg 195 (232)
++++|.... ||
T Consensus 119 ~ga~lvN~a-RG 129 (178)
T PF02826_consen 119 PGAVLVNVA-RG 129 (178)
T ss_dssp TTEEEEESS-SG
T ss_pred cceEEEecc-ch
Confidence 999988764 44
No 38
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=62.64 E-value=26 Score=32.33 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCEEEEEcCHH--Hh---hC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 120 DIKDYLTSQGVEWEESADLM--EV---AS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D~~--EA---l~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+.+++.+.|+.+....+.. +. ++ +.|+++.-.| ++.|.+++++..+-.++-+||-
T Consensus 47 ~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHpS 109 (313)
T TIGR00460 47 PVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVVSF-----------------GKILPKEFLDLFPYGCINVHPS 109 (313)
T ss_pred hHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEccc-----------------hhhCCHHHHhhccCCEEEecCc
Confidence 36788888898875544432 22 22 5788877665 2468888888877789999985
Q ss_pred C
Q 026841 193 P 193 (232)
Q Consensus 193 P 193 (232)
+
T Consensus 110 l 110 (313)
T TIGR00460 110 L 110 (313)
T ss_pred c
Confidence 5
No 39
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=62.64 E-value=12 Score=34.61 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.9
Q ss_pred HHHHhCCCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 123 DYLTSQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 123 e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
+.+++.|..+...+|++|+++++|||++-+-.
T Consensus 171 ~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 171 LRASDYEVPVRAATDPREAVEGCDILVTTTPS 202 (325)
T ss_pred HHHHhhCCcEEEeCCHHHHhccCCEEEEecCC
Confidence 33445687888899999999999999997743
No 40
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=62.44 E-value=12 Score=34.92 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=47.0
Q ss_pred HhhccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcC
Q 026841 104 ESQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQ 183 (232)
Q Consensus 104 ~A~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak 183 (232)
.++.||+. +...=|---++.....|+. ..+++++.++.+|||..-.=..+. ....||.+.++++|
T Consensus 160 ~l~afgm~-v~~~d~~~~~~~~~~~~~~--~~~~Ld~lL~~sDiv~lh~PlT~e------------T~g~i~~~~~a~MK 224 (324)
T COG0111 160 RLKAFGMK-VIGYDPYSPRERAGVDGVV--GVDSLDELLAEADILTLHLPLTPE------------TRGLINAEELAKMK 224 (324)
T ss_pred HHHhCCCe-EEEECCCCchhhhccccce--ecccHHHHHhhCCEEEEcCCCCcc------------hhcccCHHHHhhCC
Confidence 44557765 4444441122222223333 568899999999999876632211 23568999999999
Q ss_pred CCcEEeCCC
Q 026841 184 KHAVVLHPL 192 (232)
Q Consensus 184 ~dai~MHcL 192 (232)
+.++|..|.
T Consensus 225 ~gailIN~a 233 (324)
T COG0111 225 PGAILINAA 233 (324)
T ss_pred CCeEEEECC
Confidence 999888884
No 41
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=61.59 E-value=12 Score=36.96 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=33.0
Q ss_pred CccchhhhHHHhhccCcccccccChHHHHHHHHhCC--CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 94 GKKFQLDDVIESQQFDRDILNAIFEDDIKDYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 94 ~~k~~l~~li~A~~~~~~~L~va~P~~i~e~l~~~G--~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
|.++.|-||.+-++ . .... -.+.++++.| .+++.+.|++||++|||+|++.-
T Consensus 32 ~~el~L~Did~~r~-~---~i~~---~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~~~ 85 (442)
T COG1486 32 VRELALYDIDEERL-K---IIAI---LAKKLVEEAGAPVKVEATTDRREALEGADFVITQI 85 (442)
T ss_pred cceEEEEeCCHHHH-H---HHHH---HHHHHHHhhCCCeEEEEecCHHHHhcCCCEEEEEE
Confidence 45666766655543 1 0000 1124455665 46788999999999999998754
No 42
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=59.57 E-value=12 Score=36.41 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=33.1
Q ss_pred CccchhhhHHHhhccCcccccccChHHH-HHHHHhCC--CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 94 GKKFQLDDVIESQQFDRDILNAIFEDDI-KDYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 94 ~~k~~l~~li~A~~~~~~~L~va~P~~i-~e~l~~~G--~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
|..+.|.|+-+.+. +. -..+ ++++++.| .+++.+.|.+||++|||+|++.-
T Consensus 29 ~~ei~L~DId~~rl------~~--v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~~i 82 (437)
T cd05298 29 LRELVLYDIDAERQ------EK--VAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFAQI 82 (437)
T ss_pred CCEEEEECCCHHHH------HH--HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEEEe
Confidence 56677777655432 11 1122 34445555 46788999999999999998754
No 43
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=56.14 E-value=27 Score=30.93 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.6
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..+++.++|+++++++||+|+.+.
T Consensus 55 ~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 55 DIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CcEEEECCchHHHhCCCCEEEECC
Confidence 567888899999999999998854
No 44
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=55.59 E-value=29 Score=32.90 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=36.5
Q ss_pred ccccCccchhhhHHHhhccCcccccccCh---HHHHHHHH----------------hCCCEEEEEcCHHHhhCcCCEEEE
Q 026841 90 SFTIGKKFQLDDVIESQQFDRDILNAIFE---DDIKDYLT----------------SQGVEWEESADLMEVASKCDVVYQ 150 (232)
Q Consensus 90 ~~~~~~k~~l~~li~A~~~~~~~L~va~P---~~i~e~l~----------------~~G~~v~~~~D~~EAl~~ADVVYt 150 (232)
+|++=..|.+.++++|..-|- -.-++| +.+.+.++ ..|++ +++|-.||++++|++++
T Consensus 70 ~~~v~d~fd~~~v~~ah~~g~--~e~vmp~ir~~v~~~a~~~pkppk~~ihf~~pEdaGvk--VtsDD~EAv~~aei~I~ 145 (340)
T TIGR01723 70 GFTVIDDFDPKEVIEAHLEGN--PESIMPKIREVVNAKAKELPKPPKGAIHFVHPEDLGLK--VTTDDREAVEDADIIIT 145 (340)
T ss_pred CeEEeecCCHHHHHHHHhcCC--HHHhhHHHHHHHHHHHhhCCCCCcceeeecCHHHcCce--EecCcHHHhcCCCEEEE
Confidence 455557889999999987653 122223 11222222 33445 56777899999999987
Q ss_pred cc
Q 026841 151 TR 152 (232)
Q Consensus 151 dr 152 (232)
=.
T Consensus 146 ft 147 (340)
T TIGR01723 146 WL 147 (340)
T ss_pred Ec
Confidence 44
No 45
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=54.61 E-value=18 Score=34.22 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=39.5
Q ss_pred CccchhhhHHHh--hccCcccccccChHH-----HHHHHHh-CCCEEEEEcCHHHhhCcCCEEEEccccc
Q 026841 94 GKKFQLDDVIES--QQFDRDILNAIFEDD-----IKDYLTS-QGVEWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 94 ~~k~~l~~li~A--~~~~~~~L~va~P~~-----i~e~l~~-~G~~v~~~~D~~EAl~~ADVVYtdrwqs 155 (232)
|-..|=+=.++| ..++...++|.-+.. +...+.+ .|..+....|.++|+++||+|.|.+-..
T Consensus 137 GaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~ 206 (330)
T COG2423 137 GAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST 206 (330)
T ss_pred CCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC
Confidence 555554322222 446666677776622 2233333 3445778899999999999999998654
No 46
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=54.20 E-value=18 Score=34.97 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHhCC--CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
+++++.| .+++.+.|.++|++|||+|++.-
T Consensus 52 ~~~~~~~~~~~v~~t~d~~~al~gadfVi~~~ 83 (419)
T cd05296 52 RMVKKAGLPIKVHLTTDRREALEGADFVFTQI 83 (419)
T ss_pred HHHHhhCCCeEEEEeCCHHHHhCCCCEEEEEE
Confidence 4455555 67888999999999999998765
No 47
>PRK06199 ornithine cyclodeaminase; Validated
Probab=51.79 E-value=25 Score=33.60 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=36.4
Q ss_pred CccchhhhHHHhh--cc-CcccccccChH-----HHHHHHHhC--CC-EEEEEcCHHHhhCcCCEEEEcccc
Q 026841 94 GKKFQLDDVIESQ--QF-DRDILNAIFED-----DIKDYLTSQ--GV-EWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 94 ~~k~~l~~li~A~--~~-~~~~L~va~P~-----~i~e~l~~~--G~-~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
|-..|=...++|. .+ +++.++|.=.. .+.+.+.+. |. ++...+|++|++++||||.|.+-.
T Consensus 162 G~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 162 GPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 5555544333332 12 24446664442 223334333 44 588899999999999999987753
No 48
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=51.05 E-value=31 Score=31.70 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCEEEEEcCH-----HHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 120 DIKDYLTSQGVEWEESADL-----MEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D~-----~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+.++++++|+.+....++ .+.++ +.|++++-.| .+.|.+++++..+..++-+||-
T Consensus 47 ~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHps 109 (309)
T PRK00005 47 PVKQLALEHGIPVLQPEKLRDPEFLAELAALNADVIVVVAY-----------------GQILPKAVLDIPRLGCINLHAS 109 (309)
T ss_pred HHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEehh-----------------hcccCHHHHhcCCCCEEEEeCc
Confidence 4567888888886443332 12222 5777776664 2568888888877789999986
Q ss_pred C
Q 026841 193 P 193 (232)
Q Consensus 193 P 193 (232)
+
T Consensus 110 l 110 (309)
T PRK00005 110 L 110 (309)
T ss_pred c
Confidence 5
No 49
>PRK08291 ectoine utilization protein EutC; Validated
Probab=49.77 E-value=34 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 128 QGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 128 ~G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
.|.++...+|+++++.++|+|++.+-.
T Consensus 181 ~g~~v~~~~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 181 LGIPVTVARDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred cCceEEEeCCHHHHHccCCEEEEeeCC
Confidence 477877889999999999999988854
No 50
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=49.72 E-value=30 Score=28.09 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=22.7
Q ss_pred HHHHhCCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
+.....+.+..+..+..+++++||+|+.+.
T Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 48 HASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp HHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred hhhhhcccccccccccccccccccEEEEec
Confidence 333445566667778889999999999877
No 51
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=47.09 E-value=36 Score=31.66 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=29.1
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
.+++|.++++|+|..-.=..+. ....|+.+.++.+|+++++.=.
T Consensus 192 ~~l~ell~~sDvv~lh~plt~~------------T~~li~~~~l~~mk~ga~lIN~ 235 (323)
T PRK15409 192 CDLDTLLQESDFVCIILPLTDE------------THHLFGAEQFAKMKSSAIFINA 235 (323)
T ss_pred cCHHHHHHhCCEEEEeCCCChH------------HhhccCHHHHhcCCCCeEEEEC
Confidence 4899999999999876532211 1245667777777766666544
No 52
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=45.69 E-value=62 Score=31.35 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=39.5
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccCCC
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDADP 206 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~dsp 206 (232)
..++||++++|+++|++ +- .=.|+.+.|+.+|.|+++-.-.=-+.||+-.-+..|
T Consensus 261 ~tm~ea~~e~difVTtT----Gc------------~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~ 315 (434)
T KOG1370|consen 261 TTLEEAIREVDIFVTTT----GC------------KDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTP 315 (434)
T ss_pred eeHHHhhhcCCEEEEcc----CC------------cchhhHHHHHhCcCCcEEeccccccceeehhhccCC
Confidence 35678999999999988 21 225788889999999988555445667766555554
No 53
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=44.14 E-value=1e+02 Score=30.32 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred Cccchh-hhHHHhhccCcccccccCh------HHHHHHHHhCCCEEEEEc-----------------CHHHhhCcCCEEE
Q 026841 94 GKKFQL-DDVIESQQFDRDILNAIFE------DDIKDYLTSQGVEWEESA-----------------DLMEVASKCDVVY 149 (232)
Q Consensus 94 ~~k~~l-~~li~A~~~~~~~L~va~P------~~i~e~l~~~G~~v~~~~-----------------D~~EAl~~ADVVY 149 (232)
|.++++ +-|+.|+-.-.-|=+++.. .++-..++..|++|.+++ ..+||++.+|+++
T Consensus 190 GtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifi 269 (420)
T COG0499 190 GTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFV 269 (420)
T ss_pred ccchhHHHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEE
Confidence 666666 4566654433333333322 334455667787775542 2357788899999
Q ss_pred EccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccc
Q 026841 150 QTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITV 200 (232)
Q Consensus 150 tdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~ 200 (232)
|.+ +. .-.|+.+.|..+|.++++---+==+.||+-
T Consensus 270 T~T----Gn------------kdVi~~eh~~~MkDgaIl~N~GHFd~EI~~ 304 (420)
T COG0499 270 TAT----GN------------KDVIRKEHFEKMKDGAILANAGHFDVEIDV 304 (420)
T ss_pred Ecc----CC------------cCccCHHHHHhccCCeEEecccccceeccH
Confidence 887 22 235677777777777776544433445543
No 54
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=42.53 E-value=1.1e+02 Score=30.70 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEE--eCCCC-CCcccc
Q 026841 139 MEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVV--LHPLP-RLDEIT 199 (232)
Q Consensus 139 ~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~--MHcLP-Rg~EIs 199 (232)
.|.++++||||++...--+ ..+..+++++++.+|+..++ +=|-| -+.|.+
T Consensus 242 ~e~~~~~DIVI~TalipG~-----------~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t 294 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGK-----------PAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYT 294 (511)
T ss_pred HHHhCCCCEEEECcccCCC-----------CCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEe
Confidence 4557889999888854211 12456888888888876554 34444 234444
No 55
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=42.44 E-value=96 Score=28.54 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.1
Q ss_pred cCHHHhhCcCCEEEEcc
Q 026841 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdr 152 (232)
.+++|.++++|||..-.
T Consensus 188 ~~l~ell~~sDvv~lh~ 204 (311)
T PRK08410 188 VSLEELLKTSDIISIHA 204 (311)
T ss_pred ecHHHHhhcCCEEEEeC
Confidence 37899999999997655
No 56
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.04 E-value=60 Score=30.23 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=39.3
Q ss_pred hhHHHhhccCcccccccChH-------HHHHHHHhCCCEEEEEc----CHHHhhCcCCEEEEcc
Q 026841 100 DDVIESQQFDRDILNAIFED-------DIKDYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 100 ~~li~A~~~~~~~L~va~P~-------~i~e~l~~~G~~v~~~~----D~~EAl~~ADVVYtdr 152 (232)
-.|++....++.|-+|++-. .+-..+.+.|..+++.+ +++|+++.||+|++-.
T Consensus 146 ~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsav 209 (296)
T PRK14188 146 MMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAV 209 (296)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEec
Confidence 36666655566677777664 22256667899999887 7999999999998876
No 57
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=41.97 E-value=1.2e+02 Score=30.25 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=26.1
Q ss_pred CHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 137 D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
+++++++++|||++.+ + ....|+.+.++.+|+++++.-.
T Consensus 302 ~leell~~ADIVI~at----G------------t~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 302 TLEDVVETADIFVTAT----G------------NKDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred cHHHHHhcCCEEEECC----C------------cccccCHHHHhccCCCcEEEEc
Confidence 5778899999999864 1 1234666666666766666544
No 58
>PRK06141 ornithine cyclodeaminase; Validated
Probab=41.22 E-value=42 Score=30.81 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=37.2
Q ss_pred ccCccchhhhHHHh--hccCcccccccCh--HHHHH---HHHhCCCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 92 TIGKKFQLDDVIES--QQFDRDILNAIFE--DDIKD---YLTSQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 92 ~~~~k~~l~~li~A--~~~~~~~L~va~P--~~i~e---~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
..|-.-+=..+..+ ...+...++|.-. +...+ .+++.|..+...++++++++++|||++.+-.
T Consensus 130 iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 130 VVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred EECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 34555554555442 2234443555433 22233 3333466677789999999999999887753
No 59
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=40.76 E-value=70 Score=29.24 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=31.7
Q ss_pred HHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEe
Q 026841 123 DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVL 189 (232)
Q Consensus 123 e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~M 189 (232)
+.++..|.+.....++.+.++++|+|+...= ...++.+.++.++++.++.
T Consensus 189 ~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-----------------~~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 189 ARITEMGLSPFHLSELAEEVGKIDIIFNTIP-----------------ALVLTKEVLSKMPPEALII 238 (296)
T ss_pred HHHHHcCCeeecHHHHHHHhCCCCEEEECCC-----------------hhhhhHHHHHcCCCCcEEE
Confidence 4455667665444567788999999998641 0125566666666665554
No 60
>PRK06932 glycerate dehydrogenase; Provisional
Probab=40.68 E-value=90 Score=28.81 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=26.8
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
.+++|+++++|+|..-.=..+. ....||.+.++.+|+++++.-.
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~------------T~~li~~~~l~~mk~ga~lIN~ 232 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTET------------TQNLINAETLALMKPTAFLINT 232 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChH------------HhcccCHHHHHhCCCCeEEEEC
Confidence 4678999999999876532211 1234556666655555555444
No 61
>PLN02928 oxidoreductase family protein
Probab=40.56 E-value=97 Score=29.08 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=28.9
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+++|+++++|+|..-.=... .....|+.+.++.+|++++|.-..
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~------------~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTK------------ETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cCHHHHHhhCCEEEECCCCCh------------HhhcccCHHHHhcCCCCeEEEECC
Confidence 367889999999987663221 013456677777777766666554
No 62
>PLN02494 adenosylhomocysteinase
Probab=39.99 E-value=71 Score=31.90 Aligned_cols=49 Identities=27% Similarity=0.261 Sum_probs=31.6
Q ss_pred CHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCcccccc
Q 026841 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVD 201 (232)
Q Consensus 137 D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~e 201 (232)
+++++++++|||++.+ + ....++.+.|+.+++++++.-..=-+.||+.+
T Consensus 302 ~leEal~~ADVVI~tT----G------------t~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~ 350 (477)
T PLN02494 302 TLEDVVSEADIFVTTT----G------------NKDIIMVDHMRKMKNNAIVCNIGHFDNEIDML 350 (477)
T ss_pred cHHHHHhhCCEEEECC----C------------CccchHHHHHhcCCCCCEEEEcCCCCCccCHH
Confidence 4678888899998733 1 12345777888888888876554334555543
No 63
>PRK06487 glycerate dehydrogenase; Provisional
Probab=39.74 E-value=93 Score=28.72 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.5
Q ss_pred CHHHhhCcCCEEEEcc
Q 026841 137 DLMEVASKCDVVYQTR 152 (232)
Q Consensus 137 D~~EAl~~ADVVYtdr 152 (232)
+++|.++++|+|..-.
T Consensus 190 ~l~ell~~sDiv~l~l 205 (317)
T PRK06487 190 PLDELLPQVDALTLHC 205 (317)
T ss_pred CHHHHHHhCCEEEECC
Confidence 5789999999998655
No 64
>PRK08618 ornithine cyclodeaminase; Validated
Probab=39.22 E-value=48 Score=30.55 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=37.8
Q ss_pred ccCccchhhhHHHhh--ccCcccccccCh--H---HHHHHHH-hCCCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 92 TIGKKFQLDDVIESQ--QFDRDILNAIFE--D---DIKDYLT-SQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 92 ~~~~k~~l~~li~A~--~~~~~~L~va~P--~---~i~e~l~-~~G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
..|-..|=...+.+. ..+...+.|.-. + ++.+.++ ..|.++...+|.+++++++|+|++.+-.
T Consensus 132 iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 132 LIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNA 202 (325)
T ss_pred EECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCC
Confidence 445555544444432 234444555433 2 2222222 3477777789999999999999998853
No 65
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=39.06 E-value=36 Score=33.43 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=28.9
Q ss_pred hHHHHHHHHhCCCE--EEEEcCHHHhhCcCCEEEEcc
Q 026841 118 EDDIKDYLTSQGVE--WEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 118 P~~i~e~l~~~G~~--v~~~~D~~EAl~~ADVVYtdr 152 (232)
.+++.++++++..+ +..|.|.++|++++||++.-.
T Consensus 48 EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIav 84 (414)
T COG1004 48 EPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAV 84 (414)
T ss_pred CccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEc
Confidence 46777888876554 999999999999999998655
No 66
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=38.80 E-value=33 Score=28.05 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=18.4
Q ss_pred EEEEEcCHHHhhCcCCEEEEcccc
Q 026841 131 EWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 131 ~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
.+..++|++++++++|+|+.....
T Consensus 56 ~i~~t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 56 NIKATTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp TEEEESSHHHHHTT-SEEEE-S-G
T ss_pred ccccccCHHHHhCcccEEEecccH
Confidence 467899999999999999988754
No 67
>PRK06988 putative formyltransferase; Provisional
Probab=38.56 E-value=1.3e+02 Score=27.70 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCEEEEEcCH-----HHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 120 DIKDYLTSQGVEWEESADL-----MEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D~-----~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+.+++.+.|+.+....++ .+.++ +.|++++-.| ++.|..++++..+-.++-+||-
T Consensus 46 ~v~~~A~~~gip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHps 108 (312)
T PRK06988 46 SVAAVAAEHGIPVITPADPNDPELRAAVAAAAPDFIFSFYY-----------------RHMIPVDLLALAPRGAYNMHGS 108 (312)
T ss_pred HHHHHHHHcCCcEEccccCCCHHHHHHHHhcCCCEEEEehh-----------------ccccCHHHHhcCCCCEEEeeCc
Confidence 5678888999987553333 22233 5788876664 2567888888777788889985
Q ss_pred C
Q 026841 193 P 193 (232)
Q Consensus 193 P 193 (232)
+
T Consensus 109 l 109 (312)
T PRK06988 109 L 109 (312)
T ss_pred c
Confidence 3
No 68
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=37.88 E-value=54 Score=30.28 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=38.7
Q ss_pred ccCccchhhhHHHhh--ccCcccccccChH-----HHHHHHH-hCCCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 92 TIGKKFQLDDVIESQ--QFDRDILNAIFED-----DIKDYLT-SQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 92 ~~~~k~~l~~li~A~--~~~~~~L~va~P~-----~i~e~l~-~~G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
..|-..|=.-...|. ..+...++|.-.. .+.+.+. ..|.++...+|+++++.++|||++.+-.
T Consensus 134 iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 134 IFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred EECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCC
Confidence 446555554444443 2454445555442 2222222 3377777789999999999999998843
No 69
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=36.48 E-value=1e+02 Score=26.14 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=33.7
Q ss_pred hHHHhhccCcccccccChH-------HHHHHHHhCCCEEEEE----cCHHHhhCcCCEEEEcccc
Q 026841 101 DVIESQQFDRDILNAIFED-------DIKDYLTSQGVEWEES----ADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 101 ~li~A~~~~~~~L~va~P~-------~i~e~l~~~G~~v~~~----~D~~EAl~~ADVVYtdrwq 154 (232)
+|++...+..+|-++++-. -+-..+...|+.++.. .++++.+++||+|++-.-+
T Consensus 25 ~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 25 ELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGK 89 (160)
T ss_dssp HHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSS
T ss_pred HHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeecc
Confidence 4555544455555555542 2235677889999886 5688999999999998743
No 70
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=36.38 E-value=88 Score=24.47 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhCCCEEEEEcC-----HHHhhCcCCEEEEcc
Q 026841 117 FEDDIKDYLTSQGVEWEESAD-----LMEVASKCDVVYQTR 152 (232)
Q Consensus 117 ~P~~i~e~l~~~G~~v~~~~D-----~~EAl~~ADVVYtdr 152 (232)
++++..+.+++ |..+++.++ +.+.++++|++++..
T Consensus 7 ~~~~~~~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~ 46 (133)
T PF00389_consen 7 LPDEEIERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGS 46 (133)
T ss_dssp -SHHHHHHHHH-TSEEEEESSSSHHHHHHHHTTESEEEEST
T ss_pred CCHHHHHHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcC
Confidence 36677788887 667766553 235789999999754
No 71
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=36.19 E-value=1e+02 Score=26.69 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHhCCCEEEEEc--CH----------HHhh--CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCc
Q 026841 121 IKDYLTSQGVEWEESA--DL----------MEVA--SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHA 186 (232)
Q Consensus 121 i~e~l~~~G~~v~~~~--D~----------~EAl--~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~da 186 (232)
..+++++.|+.+...+ +. .+.+ .++|+++.-.| .+.+.+++++..+..+
T Consensus 43 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~-----------------~~ii~~~~l~~~~~~~ 105 (200)
T PRK05647 43 GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGF-----------------MRILGPTFVSAYEGRI 105 (200)
T ss_pred HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHh-----------------hhhCCHHHHhhccCCE
Confidence 4678888999875522 11 1223 24677766543 2467777887777778
Q ss_pred EEeCCCC
Q 026841 187 VVLHPLP 193 (232)
Q Consensus 187 i~MHcLP 193 (232)
+=+||-+
T Consensus 106 iNiHpsl 112 (200)
T PRK05647 106 INIHPSL 112 (200)
T ss_pred EEEeCcc
Confidence 8889855
No 72
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=35.15 E-value=79 Score=31.36 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=38.3
Q ss_pred hccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCC
Q 026841 106 QQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKH 185 (232)
Q Consensus 106 ~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~d 185 (232)
+.||+. +.+.=|..-.+.....|+. ..++++|+++++|+|..-.=-.+. ....++.+.++.+|++
T Consensus 158 ~~fG~~-V~~~d~~~~~~~~~~~g~~--~~~~l~ell~~aDvV~l~lPlt~~------------T~~li~~~~l~~mk~g 222 (525)
T TIGR01327 158 KAFGMK-VLAYDPYISPERAEQLGVE--LVDDLDELLARADFITVHTPLTPE------------TRGLIGAEELAKMKKG 222 (525)
T ss_pred HhCCCE-EEEECCCCChhHHHhcCCE--EcCCHHHHHhhCCEEEEccCCChh------------hccCcCHHHHhcCCCC
Confidence 446654 4443331111223345654 446899999999999876532110 1123456666666666
Q ss_pred cEEeCC
Q 026841 186 AVVLHP 191 (232)
Q Consensus 186 ai~MHc 191 (232)
+++.-+
T Consensus 223 a~lIN~ 228 (525)
T TIGR01327 223 VIIVNC 228 (525)
T ss_pred eEEEEc
Confidence 655544
No 73
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.02 E-value=77 Score=23.90 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCEEEEE--------cC--HHHhhCcCCEEEEcc
Q 026841 119 DDIKDYLTSQGVEWEES--------AD--LMEVASKCDVVYQTR 152 (232)
Q Consensus 119 ~~i~e~l~~~G~~v~~~--------~D--~~EAl~~ADVVYtdr 152 (232)
..+++.+++.|++.... .. ++..+++||+|+..+
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t 56 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFT 56 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEe
Confidence 45677888999987666 12 567899999986554
No 74
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=34.36 E-value=1.2e+02 Score=29.46 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=12.6
Q ss_pred CHHHhhCcCCEEEEcc
Q 026841 137 DLMEVASKCDVVYQTR 152 (232)
Q Consensus 137 D~~EAl~~ADVVYtdr 152 (232)
+++|+++++|||++.+
T Consensus 243 ~leeal~~aDVVItaT 258 (406)
T TIGR00936 243 TMEEAAKIGDIFITAT 258 (406)
T ss_pred CHHHHHhcCCEEEECC
Confidence 4578889999998754
No 75
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=33.99 E-value=1.4e+02 Score=29.23 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=13.2
Q ss_pred CHHHhhCcCCEEEEcc
Q 026841 137 DLMEVASKCDVVYQTR 152 (232)
Q Consensus 137 D~~EAl~~ADVVYtdr 152 (232)
+++++++++|||++.+
T Consensus 260 ~l~eal~~aDVVI~aT 275 (425)
T PRK05476 260 TMEEAAELGDIFVTAT 275 (425)
T ss_pred CHHHHHhCCCEEEECC
Confidence 5678889999998865
No 76
>PRK10433 putative RNA methyltransferase; Provisional
Probab=33.82 E-value=56 Score=29.25 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=34.7
Q ss_pred HHhhccCcccccccChHHHH---HHHHhCCC-----EEEEEcCHHHhhCcCCEEEEccc
Q 026841 103 IESQQFDRDILNAIFEDDIK---DYLTSQGV-----EWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 103 i~A~~~~~~~L~va~P~~i~---e~l~~~G~-----~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
..+..||+..|+++=|.... ......|+ ...+.++++||++++|.++.++=
T Consensus 21 Ram~nfG~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d~~~vigtta 79 (228)
T PRK10433 21 RAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTA 79 (228)
T ss_pred HHHHHCCCCEEEEeCCCCCCcHHHHHHhccHHHHhcCceEECCHHHHHHhCCeEEEEcc
Confidence 34577999999999775331 11122332 24567999999999998887764
No 77
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=33.40 E-value=1e+02 Score=28.51 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.4
Q ss_pred cCHHHhhCcCCEEEEcc
Q 026841 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdr 152 (232)
.+++++++++|||....
T Consensus 182 ~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 182 EELSAFLSQTRVLINLL 198 (312)
T ss_pred ccHHHHHhcCCEEEECC
Confidence 46789999999998766
No 78
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=33.34 E-value=1.8e+02 Score=27.51 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=40.9
Q ss_pred hHHHhhccCcccccccC--hHHHHHHHHhCCCEEEEE----cCHHHhhCcCCEEEEcc-ccccccCCChhHHHHhhcCCc
Q 026841 101 DVIESQQFDRDILNAIF--EDDIKDYLTSQGVEWEES----ADLMEVASKCDVVYQTR-IQRERFGERTDLYEEARGKYI 173 (232)
Q Consensus 101 ~li~A~~~~~~~L~va~--P~~i~e~l~~~G~~v~~~----~D~~EAl~~ADVVYtdr-wqsEr~~~~~~e~~~~~~~Yq 173 (232)
-+..+..+|.. +.++= |+...+.....|..+... +++.++++++|+|++.. |...+ .+..
T Consensus 182 aa~~a~~lGa~-V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~------------~p~l 248 (370)
T TIGR00518 182 AAKMANGLGAT-VTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK------------APKL 248 (370)
T ss_pred HHHHHHHCCCe-EEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC------------CCcC
Confidence 34445566664 44442 222222223445543221 35678899999999876 32111 1234
Q ss_pred cCHHHHHhcCCCcEEe
Q 026841 174 VDQNVLRVMQKHAVVL 189 (232)
Q Consensus 174 Vt~elL~~Ak~dai~M 189 (232)
|+.+.++.++++.+|.
T Consensus 249 it~~~l~~mk~g~vIv 264 (370)
T TIGR00518 249 VSNSLVAQMKPGAVIV 264 (370)
T ss_pred cCHHHHhcCCCCCEEE
Confidence 6788887777765543
No 79
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=33.25 E-value=75 Score=25.56 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCEEEEEcCHHHhhC--cCCEEEEcc
Q 026841 120 DIKDYLTSQGVEWEESADLMEVAS--KCDVVYQTR 152 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D~~EAl~--~ADVVYtdr 152 (232)
++-+.+-+.|..+.+..|+++|++ +-|+||+.+
T Consensus 10 e~~KlA~K~gk~livlpdl~DAiEvl~p~~V~~i~ 44 (106)
T PF09895_consen 10 EAFKLALKLGKSLIVLPDLKDAIEVLKPDVVYLIS 44 (106)
T ss_pred HHHHHHHHcCCcEEEeCCHHHHHHhcCCcEEEEEc
Confidence 444566688999999999999876 579999887
No 80
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=32.60 E-value=1.7e+02 Score=25.19 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHhCCCEEEEEc--C----------HHHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcE
Q 026841 122 KDYLTSQGVEWEESA--D----------LMEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAV 187 (232)
Q Consensus 122 ~e~l~~~G~~v~~~~--D----------~~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai 187 (232)
.+++++.|+.+...+ + +.+.++ ++|+++.-.|. +.+.+++++..+..++
T Consensus 43 ~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~-----------------~il~~~~l~~~~~~~i 105 (190)
T TIGR00639 43 LERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGFM-----------------RILGPTFLSRFAGRIL 105 (190)
T ss_pred HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCcc-----------------hhCCHHHHhhccCCEE
Confidence 467888898765422 1 112233 47888776652 4567777777666788
Q ss_pred EeCCC
Q 026841 188 VLHPL 192 (232)
Q Consensus 188 ~MHcL 192 (232)
=+||-
T Consensus 106 NiHps 110 (190)
T TIGR00639 106 NIHPS 110 (190)
T ss_pred EEeCC
Confidence 88884
No 81
>PRK07340 ornithine cyclodeaminase; Validated
Probab=31.17 E-value=77 Score=29.05 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=37.2
Q ss_pred cccCccchhhhHHHhh--ccCcccccccChH-----HHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccc
Q 026841 91 FTIGKKFQLDDVIESQ--QFDRDILNAIFED-----DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 91 ~~~~~k~~l~~li~A~--~~~~~~L~va~P~-----~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqs 155 (232)
...|-..|=...+.|. .++.+.+.|.-.. .+.+.+++.|..+. .++.++++.++|+|++.+-..
T Consensus 129 ~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 129 LLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred EEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECCHHHHhhcCCEEEEccCCC
Confidence 3445555554444443 2454435544442 22233334455654 688999999999999988543
No 82
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=30.81 E-value=73 Score=29.89 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 138 LMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 138 ~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
++|.++++|+|....=-. + -..+-||.+.|+++|+++++.-.
T Consensus 194 l~ell~~sDii~l~~Plt-------~-----~T~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 194 LDELLAESDIISLHCPLT-------P-----ETRHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred HHHHHHhCCEEEEeCCCC-------h-----HHhhhcCHHHHHhCCCCeEEEEC
Confidence 999999999997765211 0 13467899999999998887655
No 83
>PRK08605 D-lactate dehydrogenase; Validated
Probab=30.45 E-value=67 Score=29.83 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=33.5
Q ss_pred EEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC
Q 026841 134 ESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP 193 (232)
Q Consensus 134 ~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP 193 (232)
...+++++++++|+|+.-.=... .....++.+.++.+++++++..+--
T Consensus 190 ~~~~l~ell~~aDvIvl~lP~t~------------~t~~li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 190 YKDTIEEAVEGADIVTLHMPATK------------YNHYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred ccCCHHHHHHhCCEEEEeCCCCc------------chhhhcCHHHHhcCCCCcEEEECCC
Confidence 44689999999999987652211 0124567788888888888877643
No 84
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=30.08 E-value=1.3e+02 Score=24.49 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=17.1
Q ss_pred hCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 127 SQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 127 ~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
+.|+. +..+.+|++.++|+|..-.=
T Consensus 49 ~aGA~--I~~~~~ev~~~adiIl~v~~ 73 (136)
T PF05222_consen 49 EAGAE--IVSRAEEVYSDADIILKVKP 73 (136)
T ss_dssp HTTEE--EESSHHHHHTTSSEEEESS-
T ss_pred hCCcE--EecCchhhcccCCEEEEECC
Confidence 45555 34566788889999987664
No 85
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=29.86 E-value=67 Score=29.85 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=38.2
Q ss_pred ccccCccchhhhHHHhhccCcccccccChHHHHHHH----Hh-----CC---------CEEEEEcCHHHhhCcCCEEEEc
Q 026841 90 SFTIGKKFQLDDVIESQQFDRDILNAIFEDDIKDYL----TS-----QG---------VEWEESADLMEVASKCDVVYQT 151 (232)
Q Consensus 90 ~~~~~~k~~l~~li~A~~~~~~~L~va~P~~i~e~l----~~-----~G---------~~v~~~~D~~EAl~~ADVVYtd 151 (232)
+|++=.-|..+++|+|..=|- -.-++| .+++++ ++ .| ..+.++.|-.||+.+||+|++
T Consensus 70 ~ftvid~f~~~evieahlegn--pe~imp-kire~vn~~akelpkppkgaihf~hped~g~~vttddreavedad~iit- 145 (343)
T COG4074 70 GFTVIDIFEDDEVIEAHLEGN--PEDIMP-KIREYVNDIAKELPKPPKGAIHFLHPEDMGIVVTTDDREAVEDADMIIT- 145 (343)
T ss_pred CceEeeccCcHHHHHHHhcCC--hHHhhH-HHHHHHHHHHHhCCCCCcceeeecCHHHceeEEecCcHhhhcCCCeEEE-
Confidence 377777888899999987542 112222 122222 21 11 245677888899999999986
Q ss_pred cccc
Q 026841 152 RIQR 155 (232)
Q Consensus 152 rwqs 155 (232)
|--
T Consensus 146 -wlp 148 (343)
T COG4074 146 -WLP 148 (343)
T ss_pred -ecc
Confidence 643
No 86
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=29.38 E-value=1.2e+02 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=24.8
Q ss_pred hccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 106 QQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 106 ~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
+.||++ +.+.=|..-.+.....|... . +++|.++++|+|..-.
T Consensus 160 ~~fG~~-V~~~d~~~~~~~~~~~g~~~--~-~l~ell~~aDiV~l~l 202 (526)
T PRK13581 160 KAFGMK-VIAYDPYISPERAAQLGVEL--V-SLDELLARADFITLHT 202 (526)
T ss_pred HhCCCE-EEEECCCCChhHHHhcCCEE--E-cHHHHHhhCCEEEEcc
Confidence 446654 44333311112233456553 2 7999999999997755
No 87
>PRK15076 alpha-galactosidase; Provisional
Probab=28.94 E-value=81 Score=30.63 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.1
Q ss_pred CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 130 VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 130 ~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
.+++.+.|..++++|||+|+..-
T Consensus 61 ~~i~~ttD~~eal~dADfVv~ti 83 (431)
T PRK15076 61 AKITATTDRREALQGADYVINAI 83 (431)
T ss_pred eEEEEECCHHHHhCCCCEEeEee
Confidence 57778899999999999998765
No 88
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=28.77 E-value=91 Score=30.00 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=23.0
Q ss_pred HHHHhCC--CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQG--VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G--~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
+++...+ .+++.+.|+++|+++||+|+..-
T Consensus 51 ~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai 82 (423)
T cd05297 51 KIVEELGAPLKIEATTDRREALDGADFVINTI 82 (423)
T ss_pred HHHHhcCCCeEEEEeCCHHHHhcCCCEEEEee
Confidence 3444433 57788999999999999998766
No 89
>PLN02285 methionyl-tRNA formyltransferase
Probab=28.64 E-value=76 Score=29.73 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCEEEEE---c-----CHHHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEe
Q 026841 120 DIKDYLTSQGVEWEES---A-----DLMEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVL 189 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~---~-----D~~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~M 189 (232)
.+++++.+.|+...+. . +..+.++ +.|++++-.| .+.|.+++++..+-.++-+
T Consensus 59 pv~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~~l~~~~~g~iNi 121 (334)
T PLN02285 59 PVAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAY-----------------GNILPQKFLDIPKLGTVNI 121 (334)
T ss_pred HHHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCCEEEhhHh-----------------hhhcCHHHHhhccCCEEEE
Confidence 3678888888873211 1 1122333 4677665553 2467888888777788889
Q ss_pred CC--CC
Q 026841 190 HP--LP 193 (232)
Q Consensus 190 Hc--LP 193 (232)
|| ||
T Consensus 122 HpSLLP 127 (334)
T PLN02285 122 HPSLLP 127 (334)
T ss_pred eccccc
Confidence 98 55
No 90
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.53 E-value=93 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCEEEEE----cCHHHhhCcCCEEEEccc
Q 026841 119 DDIKDYLTSQGVEWEES----ADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 119 ~~i~e~l~~~G~~v~~~----~D~~EAl~~ADVVYtdrw 153 (232)
+.+++++++.|.++++. .++++.+.++|+|.+..=
T Consensus 18 ~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQ 56 (99)
T cd05565 18 NALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQ 56 (99)
T ss_pred HHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcCh
Confidence 56678899999987664 445577889999988873
No 91
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.36 E-value=85 Score=22.78 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 119 ~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
+...+..++.|..+. ..+..|+++++|+|+....
T Consensus 37 ~~~~~~~~~~~~~~~-~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 37 EKAAELAKEYGVQAT-ADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp HHHHHHHHHCTTEEE-SEEHHHHHHHTSEEEE-S-
T ss_pred HHHHHHHHhhccccc-cCChHHhhccCCEEEEEEC
Confidence 444566677787742 2378999999999998874
No 92
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.09 E-value=62 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=19.7
Q ss_pred EEEEEcCHHHhhCcCCEEEEccccc
Q 026841 131 EWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 131 ~v~~~~D~~EAl~~ADVVYtdrwqs 155 (232)
.++..++++++++++|+|+..+-+.
T Consensus 53 ~~~~~~~~~~~~~~~D~vvl~t~h~ 77 (106)
T PF03720_consen 53 GVEVCDDLEEALKGADAVVLATDHD 77 (106)
T ss_dssp CEEEESSHHHHHTTESEEEESS--G
T ss_pred ceEEecCHHHHhcCCCEEEEEecCH
Confidence 4557889999999999999888543
No 93
>PLN03139 formate dehydrogenase; Provisional
Probab=28.07 E-value=85 Score=30.25 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=28.3
Q ss_pred EcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 135 SADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 135 ~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
.++++|+++++|||+...=-. ++. ...+|.+.++.+|++++|+=+
T Consensus 246 ~~~l~ell~~sDvV~l~lPlt-------~~T-----~~li~~~~l~~mk~ga~lIN~ 290 (386)
T PLN03139 246 EEDLDAMLPKCDVVVINTPLT-------EKT-----RGMFNKERIAKMKKGVLIVNN 290 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCC-------HHH-----HHHhCHHHHhhCCCCeEEEEC
Confidence 468999999999998865211 111 112466666666666666544
No 94
>PRK13243 glyoxylate reductase; Reviewed
Probab=27.81 E-value=1.1e+02 Score=28.57 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.8
Q ss_pred cCHHHhhCcCCEEEEcc
Q 026841 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdr 152 (232)
.+++|+++++|+|..-.
T Consensus 196 ~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 196 RPLEELLRESDFVSLHV 212 (333)
T ss_pred cCHHHHHhhCCEEEEeC
Confidence 57999999999998766
No 95
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.69 E-value=1.9e+02 Score=24.90 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=24.1
Q ss_pred HHHHhC-CCEEEEEc-----CHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQ-GVEWEESA-----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~-G~~v~~~~-----D~~EAl~~ADVVYtdr 152 (232)
+.++.. |.++...+ +..+.+.+||+||...
T Consensus 53 ~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~G 88 (212)
T cd03146 53 AAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGG 88 (212)
T ss_pred HHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECC
Confidence 344567 88887776 6679999999999987
No 96
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=27.34 E-value=1.6e+02 Score=29.68 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCEEEEEcCHH-----HhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 120 DIKDYLTSQGVEWEESADLM-----EVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D~~-----EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+++++.++|+.+....++. +.++ +.|+++.-.| .+.|.+++++..+-.++-+||-
T Consensus 44 ~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~~-----------------~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 44 SVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYY-----------------RNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEccc-----------------cccCCHHHHhhcCCCEEEEeCC
Confidence 46788899999876555432 2333 5788876654 2468888888878888999985
Q ss_pred C
Q 026841 193 P 193 (232)
Q Consensus 193 P 193 (232)
+
T Consensus 107 l 107 (660)
T PRK08125 107 L 107 (660)
T ss_pred c
Confidence 4
No 97
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=27.20 E-value=79 Score=28.39 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=35.2
Q ss_pred HHHhhccCcccccccChHHH---HHHHHhCCCE-----EEEEcCHHHhhCcCCEEEEccc
Q 026841 102 VIESQQFDRDILNAIFEDDI---KDYLTSQGVE-----WEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 102 li~A~~~~~~~L~va~P~~i---~e~l~~~G~~-----v~~~~D~~EAl~~ADVVYtdrw 153 (232)
+..+..||+++|.++-|... .......|+. ..+.++++|++++.+.||.++-
T Consensus 22 aRa~~~fG~~~l~lv~p~~~~~~~a~~~a~GA~~~l~~a~i~~~l~eal~~~~~vvatt~ 81 (245)
T PRK15114 22 ARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNATIVDTLDEALAGCSLVVGTSA 81 (245)
T ss_pred HHHHHhcCCCEEEEeCCCCCCcCHHHHHcCCchhhcccCeEecCHHHHHhcCCEEEEEcC
Confidence 34567899999999776421 1222234432 3467899999999998888874
No 98
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=26.88 E-value=2.2e+02 Score=25.45 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=21.4
Q ss_pred HHHHhCCCEEEEEc---CHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQGVEWEESA---DLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~v~~~~---D~~EAl~~ADVVYtdr 152 (232)
+.+++.|.++...+ |+.+++.++|+||...
T Consensus 55 ~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~G 87 (233)
T PRK05282 55 EALAPLGIEVTGIHRVADPVAAIENAEAIFVGG 87 (233)
T ss_pred HHHHHCCCEEEEeccchhhHHHHhcCCEEEECC
Confidence 44556787765544 3456799999999876
No 99
>PLN02306 hydroxypyruvate reductase
Probab=26.86 E-value=77 Score=30.42 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=32.0
Q ss_pred EcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 135 SADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 135 ~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
..+++|+++++|||..-.=-.. .....||.+.++.+|++++|.-..
T Consensus 227 ~~~L~ell~~sDiV~lh~Plt~------------~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 227 ASSMEEVLREADVISLHPVLDK------------TTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCCh------------hhhhhcCHHHHHhCCCCeEEEECC
Confidence 4689999999999987542110 123567778888788777777665
No 100
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=26.65 E-value=2.7e+02 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=26.9
Q ss_pred cCHHHhhCcCCEEEEccccc-cccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 136 ADLMEVASKCDVVYQTRIQR-ERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqs-Er~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
.+++|.++++|+|..-.=-. ++. +.....++.+.++.+|+++++.=+
T Consensus 159 ~~l~ell~~aDiV~lh~Plt~~g~---------~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 159 VSLERILEECDVISLHTPLTKEGE---------HPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred cCHHHHHhhCCEEEEeCcCCCCcc---------ccccccCCHHHHhcCCCCeEEEEC
Confidence 36788899999987654221 110 011244566666666666655544
No 101
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=25.01 E-value=1.6e+02 Score=24.31 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=27.0
Q ss_pred CHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEE
Q 026841 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVV 188 (232)
Q Consensus 137 D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~ 188 (232)
.+.+.++.+|+|++...++.+ ..+..|+.++++.+++..+|
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~-----------~~P~lvt~~~~~~m~~gsvI 135 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGK-----------RAPRLVTEEMVKSMKPGSVI 135 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTS-----------S---SBEHHHHHTSSTTEEE
T ss_pred HHHHHHhhCcEEeeecccCCC-----------CCCEEEEhHHhhccCCCceE
Confidence 346788999999987755422 13567999999988866554
No 102
>PLN02342 ornithine carbamoyltransferase
Probab=25.01 E-value=35 Score=32.51 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=33.3
Q ss_pred ccchhhcceeccCCCccccCccchhhhHHHhhccCcccc
Q 026841 75 RNSIQCQAVETQSTPSFTIGKKFQLDDVIESQQFDRDIL 113 (232)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~k~~l~~li~A~~~~~~~L 113 (232)
|..+.|.++.|.++|+ +.|+||+..+++.-..|..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~~~~~r~~lsi~dls~~ei 59 (348)
T PLN02342 22 RGLVVCAASSSAAAPS-PIKGKSKPKHFLHIDDFDKEEI 59 (348)
T ss_pred HhhhHhhhhcCCCCcc-cccCCCCCCCccchhhCCHHHH
Confidence 5578999999999999 9999999999998888887633
No 103
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.01 E-value=1.6e+02 Score=27.34 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=35.1
Q ss_pred hHHHhhccCcccccccChH-------HHHHHHHhCCCEEEEEc----CHHHhhCcCCEEEEcc
Q 026841 101 DVIESQQFDRDILNAIFED-------DIKDYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 101 ~li~A~~~~~~~L~va~P~-------~i~e~l~~~G~~v~~~~----D~~EAl~~ADVVYtdr 152 (232)
.|++....+..|-+|++-. .+-..+...|++++..+ |+.+.+++||+|++-.
T Consensus 147 ~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~av 209 (285)
T PRK14189 147 KMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAV 209 (285)
T ss_pred HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcC
Confidence 5555544455555555541 22355667888887754 7889999999999876
No 104
>PLN03139 formate dehydrogenase; Provisional
Probab=24.00 E-value=1.5e+02 Score=28.49 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCEEEEEcC-------HHHhhCcCCEEEEccc
Q 026841 120 DIKDYLTSQGVEWEESAD-------LMEVASKCDVVYQTRI 153 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D-------~~EAl~~ADVVYtdrw 153 (232)
++++++++.|.++.+..+ +.+.++++|+|++..+
T Consensus 66 ~~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~ 106 (386)
T PLN03139 66 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPF 106 (386)
T ss_pred cHHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCc
Confidence 566888888887766543 3467899999998653
No 105
>PLN00135 malate dehydrogenase
Probab=23.69 E-value=1.4e+02 Score=27.88 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=17.4
Q ss_pred EEEEEcCHHHhhCcCCEEEEcc
Q 026841 131 EWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 131 ~v~~~~D~~EAl~~ADVVYtdr 152 (232)
.+..+.|..+++++||||+.+-
T Consensus 45 ~i~~~~~~y~~~~daDiVVitA 66 (309)
T PLN00135 45 GVVATTDVVEACKGVNIAVMVG 66 (309)
T ss_pred CcEecCCHHHHhCCCCEEEEeC
Confidence 4455677789999999998776
No 106
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.42 E-value=1.9e+02 Score=27.11 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=37.3
Q ss_pred hHHHhhccCcccccccChHH-------HHHHHHhCCCEEEEE----cCHHHhhCcCCEEEEcc
Q 026841 101 DVIESQQFDRDILNAIFEDD-------IKDYLTSQGVEWEES----ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 101 ~li~A~~~~~~~L~va~P~~-------i~e~l~~~G~~v~~~----~D~~EAl~~ADVVYtdr 152 (232)
.|++....++.|-+|++-.- +-.++.+.|+++++. .++.|++++||+|++-.
T Consensus 148 ~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsav 210 (301)
T PRK14194 148 RLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAV 210 (301)
T ss_pred HHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEec
Confidence 66666556666666666532 225666789998776 46889999999999876
No 107
>PRK07574 formate dehydrogenase; Provisional
Probab=23.35 E-value=1.3e+02 Score=28.94 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.8
Q ss_pred EEcCHHHhhCcCCEEEEcc
Q 026841 134 ESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 134 ~~~D~~EAl~~ADVVYtdr 152 (232)
...+++|+++++|||..-.
T Consensus 238 ~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 238 YHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred ecCCHHHHhhcCCEEEEcC
Confidence 4568999999999997765
No 108
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=22.91 E-value=1.4e+02 Score=26.57 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHhhccCcccccccChHHH--HH-HHHhCCC-----EEEEEcCHHHhhCcCCEEEEcc
Q 026841 103 IESQQFDRDILNAIFEDDI--KD-YLTSQGV-----EWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 103 i~A~~~~~~~L~va~P~~i--~e-~l~~~G~-----~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..+..||++.|.++-|... .+ .....|+ ...+++|+++++++.+.|+.++
T Consensus 22 R~~~~fG~~~l~lv~p~~~~~~~a~~~a~ga~~~l~~~~v~~~l~eal~~~~~vv~tt 79 (233)
T TIGR00050 22 RAMKNMGLTELCLVNPKSHLEEEAYALAAGARDILDNAKVVDDLDEALDDCDLVVGTS 79 (233)
T ss_pred HHHHhCCCCEEEEeCCCcCCCHHHHHHhCChHHhhccCEEECCHHHHHhcCCEEEEEC
Confidence 4457799988999887532 11 1123443 2256789999999999888776
No 109
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=22.88 E-value=1.6e+02 Score=27.05 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=16.0
Q ss_pred EEEEcCHHHhhCcCCEEEEcc
Q 026841 132 WEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 132 v~~~~D~~EAl~~ADVVYtdr 152 (232)
+.+..+..+++++||+|+.+.
T Consensus 52 ~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 52 KKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred eEEecCCHHHHCCCCEEEECC
Confidence 344455578999999999876
No 110
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.58 E-value=2e+02 Score=21.80 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCEEEEEc-CHHH---hhCcCCEEEEcc
Q 026841 119 DDIKDYLTSQGVEWEESA-DLME---VASKCDVVYQTR 152 (232)
Q Consensus 119 ~~i~e~l~~~G~~v~~~~-D~~E---Al~~ADVVYtdr 152 (232)
..+++.+++.|..+++.+ ++.+ .+.++|+|.++.
T Consensus 21 ~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 21 EEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred HHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 344577888999877765 4433 347889998886
No 111
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=22.40 E-value=1.6e+02 Score=29.06 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=18.0
Q ss_pred EEEEEcCHHHhhCcCCEEEEcc
Q 026841 131 EWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 131 ~v~~~~D~~EAl~~ADVVYtdr 152 (232)
++.+..+..++++|||||+.+.
T Consensus 163 ~v~i~~~~ye~~kdaDiVVitA 184 (444)
T PLN00112 163 EVSIGIDPYEVFQDAEWALLIG 184 (444)
T ss_pred ceEEecCCHHHhCcCCEEEECC
Confidence 5666667789999999999876
No 112
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=22.04 E-value=2.6e+02 Score=25.00 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHhCCCEEEEEcCHHHhhCcCCEEEEccccc
Q 026841 123 DYLTSQGVEWEESADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 123 e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqs 155 (232)
..++..|.++.++.|+++ +..||-|+....-.
T Consensus 19 ~Aler~G~~~~vs~d~~~-i~~AD~liLPGVGa 50 (204)
T COG0118 19 KALERLGAEVVVSRDPEE-ILKADKLILPGVGA 50 (204)
T ss_pred HHHHHcCCeeEEecCHHH-HhhCCEEEecCCCC
Confidence 445678999999999865 77899999999854
No 113
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.89 E-value=1.9e+02 Score=26.92 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=37.7
Q ss_pred hHHHhhccCcccccccChHH-------HHHHHHhCCCEEEEE----cCHHHhhCcCCEEEEcc
Q 026841 101 DVIESQQFDRDILNAIFEDD-------IKDYLTSQGVEWEES----ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 101 ~li~A~~~~~~~L~va~P~~-------i~e~l~~~G~~v~~~----~D~~EAl~~ADVVYtdr 152 (232)
.|++....++.|-++++-.- +-.++.+.|+.+++. .++.+++++||+|++-.
T Consensus 147 ~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~av 209 (284)
T PRK14179 147 EMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAI 209 (284)
T ss_pred HHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEec
Confidence 66666666667777776633 225666789988874 66789999999998866
No 114
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=21.58 E-value=1.5e+02 Score=29.07 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcC---CC-cEEeCCCCCCccc
Q 026841 123 DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQ---KH-AVVLHPLPRLDEI 198 (232)
Q Consensus 123 e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak---~d-ai~MHcLPRg~EI 198 (232)
+.+++.|+.+.-.+++.+++.++|||+.-+= ...|.|+.+.++.+- ++ .+|==-.||+.|-
T Consensus 217 ~La~~~~~~~~~l~el~~~l~~~DvVissTs---------------a~~~ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 217 ELAKKLGAEAVALEELLEALAEADVVISSTS---------------APHPIITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred HHHHHhCCeeecHHHHHHhhhhCCEEEEecC---------------CCccccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 4566788887778899999999999998771 135888888888662 23 3333455777543
No 115
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.35 E-value=2.3e+02 Score=26.32 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=46.9
Q ss_pred hhHHHhhccCcccccccChH-------HHHHHHHhCCCEEEEEc----CHHHhhCcCCEEEEccccccccCCChhHHHHh
Q 026841 100 DDVIESQQFDRDILNAIFED-------DIKDYLTSQGVEWEESA----DLMEVASKCDVVYQTRIQRERFGERTDLYEEA 168 (232)
Q Consensus 100 ~~li~A~~~~~~~L~va~P~-------~i~e~l~~~G~~v~~~~----D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~ 168 (232)
-.|++...++..|-++++-. -+-.++...|+++++.| |+++.++.||+|++-. +.
T Consensus 145 i~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~Av----Gk---------- 210 (282)
T PRK14182 145 MRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAI----GK---------- 210 (282)
T ss_pred HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEec----CC----------
Confidence 35555555555555665552 12245666788888764 7788999999998866 21
Q ss_pred hcCCccCHHHHHhcCCCcEEeCCCC
Q 026841 169 RGKYIVDQNVLRVMQKHAVVLHPLP 193 (232)
Q Consensus 169 ~~~YqVt~elL~~Ak~dai~MHcLP 193 (232)
+..|+.+.+ ++++++.=.+-
T Consensus 211 --~~~i~~~~i---k~gaiVIDvGi 230 (282)
T PRK14182 211 --AELVKGAWV---KEGAVVIDVGM 230 (282)
T ss_pred --cCccCHHHc---CCCCEEEEeec
Confidence 234666654 45666665554
No 116
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=20.29 E-value=1.1e+02 Score=29.97 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=26.1
Q ss_pred HHHHHHHHh-CCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 119 DDIKDYLTS-QGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 119 ~~i~e~l~~-~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
+++.+.+++ .|.++-++.|++.++++||+|+...
T Consensus 52 pgldevv~~crgknlffstdiekai~eadlvfisv 86 (481)
T KOG2666|consen 52 PGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISV 86 (481)
T ss_pred CCHHHHHHHhcCCceeeecchHHHhhhcceEEEEe
Confidence 344455543 5888889999999999999998654
No 117
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.25 E-value=96 Score=30.55 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.9
Q ss_pred EEEEEcCHHHhhCcCCEEEEcc-ccc
Q 026841 131 EWEESADLMEVASKCDVVYQTR-IQR 155 (232)
Q Consensus 131 ~v~~~~D~~EAl~~ADVVYtdr-wqs 155 (232)
.++..+|+++++++||+++..| |+.
T Consensus 363 ~~~~~~~~~~~~~~aDaivi~tew~e 388 (414)
T COG1004 363 DVELESDAEEALKGADAIVINTEWDE 388 (414)
T ss_pred CceEeCCHHHHHhhCCEEEEeccHHH
Confidence 4578899999999999998877 654
No 118
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.01 E-value=2.4e+02 Score=26.18 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=36.6
Q ss_pred hHHHhhccCcccccccChHH-------HHHHHHhCCCEEEEEcC----HHHhhCcCCEEEEcc
Q 026841 101 DVIESQQFDRDILNAIFEDD-------IKDYLTSQGVEWEESAD----LMEVASKCDVVYQTR 152 (232)
Q Consensus 101 ~li~A~~~~~~~L~va~P~~-------i~e~l~~~G~~v~~~~D----~~EAl~~ADVVYtdr 152 (232)
.|++...++++|-++++-.. +-..+...|+++++.++ +.+.+++||+|+...
T Consensus 147 ~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAv 209 (286)
T PRK14175 147 EILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAV 209 (286)
T ss_pred HHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECC
Confidence 56666555666666666532 22556678898887654 778999999999877
Done!