Query 026841
Match_columns 232
No_of_seqs 135 out of 1259
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ml4_A Aspartate transcarbamoy 100.0 3.5E-37 1.2E-41 280.7 11.3 148 82-231 143-307 (308)
2 1pg5_A Aspartate carbamoyltran 100.0 2.9E-37 9.9E-42 280.2 10.1 148 82-231 137-299 (299)
3 1pvv_A Otcase, ornithine carba 100.0 6E-37 2E-41 279.9 11.4 150 82-232 143-313 (315)
4 3csu_A Protein (aspartate carb 100.0 8.6E-37 3E-41 278.4 8.7 147 82-231 142-306 (310)
5 3gd5_A Otcase, ornithine carba 100.0 1E-36 3.6E-41 279.3 8.4 149 82-231 145-314 (323)
6 4ep1_A Otcase, ornithine carba 100.0 2E-36 6.8E-41 279.1 9.4 148 82-231 167-335 (340)
7 4ekn_B Aspartate carbamoyltran 100.0 4.8E-36 1.6E-40 273.0 9.6 145 82-230 139-301 (306)
8 2i6u_A Otcase, ornithine carba 100.0 3.8E-36 1.3E-40 273.7 8.9 148 83-231 137-306 (307)
9 3tpf_A Otcase, ornithine carba 100.0 9.1E-36 3.1E-40 271.3 9.5 149 82-231 133-303 (307)
10 1vlv_A Otcase, ornithine carba 100.0 9.6E-36 3.3E-40 273.0 9.7 146 83-229 156-324 (325)
11 3grf_A Ornithine carbamoyltran 100.0 1.1E-35 3.9E-40 272.8 8.2 148 83-231 143-324 (328)
12 1duv_G Octase-1, ornithine tra 100.0 4.9E-35 1.7E-39 269.1 12.0 149 82-231 141-333 (333)
13 1dxh_A Ornithine carbamoyltran 100.0 4.8E-35 1.6E-39 269.4 12.0 149 82-231 142-334 (335)
14 4f2g_A Otcase 1, ornithine car 100.0 6.8E-36 2.3E-40 272.3 3.7 149 82-231 142-305 (309)
15 2ef0_A Ornithine carbamoyltran 100.0 4.9E-35 1.7E-39 265.9 6.7 145 83-230 143-301 (301)
16 4a8t_A Putrescine carbamoyltra 100.0 4.9E-34 1.7E-38 263.0 11.6 148 82-231 160-333 (339)
17 2w37_A Ornithine carbamoyltran 100.0 2.9E-34 1E-38 266.3 10.1 148 82-231 164-353 (359)
18 4amu_A Ornithine carbamoyltran 100.0 1.9E-34 6.5E-39 268.1 8.7 148 82-230 168-364 (365)
19 4h31_A Otcase, ornithine carba 100.0 6.5E-34 2.2E-38 263.5 11.5 148 83-231 168-358 (358)
20 1oth_A Protein (ornithine tran 100.0 9.1E-34 3.1E-38 259.5 10.8 149 82-231 143-311 (321)
21 1zq6_A Otcase, ornithine carba 100.0 1.6E-33 5.4E-38 261.4 12.3 148 82-231 176-356 (359)
22 4a8p_A Putrescine carbamoyltra 100.0 1E-33 3.5E-38 262.4 10.8 148 82-231 138-311 (355)
23 3kzn_A Aotcase, N-acetylornith 100.0 3.8E-33 1.3E-37 257.9 12.5 128 102-231 213-356 (359)
24 3r7f_A Aspartate carbamoyltran 100.0 2.6E-34 8.8E-39 261.5 4.5 144 82-231 135-291 (304)
25 3sds_A Ornithine carbamoyltran 100.0 2.8E-33 9.6E-38 259.2 11.2 137 93-230 187-347 (353)
26 3q98_A Transcarbamylase; rossm 100.0 2.9E-33 1E-37 262.6 4.7 146 83-229 177-379 (399)
27 1js1_X Transcarbamylase; alpha 100.0 1.2E-31 4.1E-36 245.9 8.0 126 100-231 186-316 (324)
28 2yfk_A Aspartate/ornithine car 100.0 1.1E-31 3.6E-36 253.4 5.3 146 83-229 174-376 (418)
29 3d6n_B Aspartate carbamoyltran 100.0 1.8E-31 6.2E-36 241.5 5.4 143 82-230 134-291 (291)
30 3h9u_A Adenosylhomocysteinase; 91.6 0.45 1.6E-05 45.0 7.7 50 136-201 258-307 (436)
31 1v8b_A Adenosylhomocysteinase; 86.9 1.1 3.8E-05 42.7 6.6 73 106-198 277-350 (479)
32 3d64_A Adenosylhomocysteinase; 86.2 1.9 6.5E-05 41.3 7.8 73 105-197 296-369 (494)
33 2b0j_A 5,10-methenyltetrahydro 84.6 1.5 5.2E-05 40.3 6.0 65 86-152 68-149 (358)
34 3n58_A Adenosylhomocysteinase; 75.4 17 0.00057 34.7 10.0 52 137-204 295-346 (464)
35 1meo_A Phosophoribosylglycinam 71.7 11 0.00039 31.6 7.2 84 91-192 6-110 (209)
36 3gvp_A Adenosylhomocysteinase 68.1 30 0.001 32.6 9.9 52 136-203 267-318 (435)
37 3o1l_A Formyltetrahydrofolate 65.9 8.3 0.00028 34.5 5.4 83 93-193 113-215 (302)
38 3p2y_A Alanine dehydrogenase/p 65.9 11 0.00037 34.9 6.3 44 137-191 258-301 (381)
39 3n0v_A Formyltetrahydrofolate 65.9 12 0.0004 33.1 6.3 85 91-193 96-200 (286)
40 3tqr_A Phosphoribosylglycinami 64.3 16 0.00056 30.9 6.7 85 91-192 11-114 (215)
41 4dio_A NAD(P) transhydrogenase 64.2 11 0.00039 35.0 6.2 45 137-192 268-312 (405)
42 3gg9_A D-3-phosphoglycerate de 63.3 17 0.00058 32.8 7.0 73 105-192 179-251 (352)
43 3lou_A Formyltetrahydrofolate 62.5 12 0.00042 33.1 5.8 85 91-193 101-205 (292)
44 4ds3_A Phosphoribosylglycinami 59.7 27 0.00094 29.4 7.3 84 93-193 15-120 (209)
45 3kcq_A Phosphoribosylglycinami 57.1 26 0.0009 29.6 6.8 83 93-192 16-113 (215)
46 3tqq_A Methionyl-tRNA formyltr 54.1 28 0.00095 31.0 6.7 57 119-192 48-111 (314)
47 3av3_A Phosphoribosylglycinami 51.6 37 0.0013 28.4 6.7 56 120-192 44-113 (212)
48 3oj0_A Glutr, glutamyl-tRNA re 50.7 17 0.00058 27.4 4.1 34 119-152 55-88 (144)
49 4hy3_A Phosphoglycerate oxidor 50.2 27 0.00091 31.8 6.0 71 105-191 195-265 (365)
50 3u95_A Glycoside hydrolase, fa 49.7 13 0.00044 35.0 3.9 29 123-151 53-83 (477)
51 3auf_A Glycinamide ribonucleot 48.2 36 0.0012 28.9 6.2 55 121-192 64-132 (229)
52 3p9x_A Phosphoribosylglycinami 47.7 54 0.0018 27.7 7.2 83 93-193 10-113 (211)
53 3jtm_A Formate dehydrogenase, 46.7 33 0.0011 30.9 6.0 45 106-153 184-229 (351)
54 1z7e_A Protein aRNA; rossmann 45.5 30 0.001 32.9 5.8 56 121-193 45-109 (660)
55 3nrb_A Formyltetrahydrofolate 45.3 11 0.00036 33.4 2.5 22 172-193 176-199 (287)
56 3d4o_A Dipicolinate synthase s 44.5 58 0.002 27.8 7.0 69 106-192 175-244 (293)
57 2g76_A 3-PGDH, D-3-phosphoglyc 44.1 44 0.0015 29.8 6.4 27 124-153 202-228 (335)
58 3q0i_A Methionyl-tRNA formyltr 44.0 58 0.002 29.0 7.1 57 120-193 54-119 (318)
59 2bln_A Protein YFBG; transfera 42.1 20 0.00068 31.7 3.7 56 120-192 44-106 (305)
60 2rir_A Dipicolinate synthase, 41.4 75 0.0026 27.1 7.3 69 106-192 177-246 (300)
61 1wwk_A Phosphoglycerate dehydr 40.8 40 0.0014 29.4 5.5 44 106-153 162-205 (307)
62 1jkx_A GART;, phosphoribosylgl 40.4 95 0.0032 25.9 7.6 83 94-193 9-111 (212)
63 3ce6_A Adenosylhomocysteinase; 38.0 89 0.003 29.6 7.7 46 103-152 291-337 (494)
64 3fef_A Putative glucosidase LP 36.4 23 0.0008 33.2 3.4 24 129-152 60-83 (450)
65 3obi_A Formyltetrahydrofolate 36.0 24 0.00081 31.2 3.2 85 91-193 95-200 (288)
66 4g2n_A D-isomer specific 2-hyd 35.7 43 0.0015 30.1 4.9 47 134-192 217-263 (345)
67 1mx3_A CTBP1, C-terminal bindi 35.5 32 0.0011 30.9 4.0 24 127-152 208-231 (347)
68 3pid_A UDP-glucose 6-dehydroge 35.1 32 0.0011 32.1 4.1 35 121-155 357-406 (432)
69 2bw0_A 10-FTHFDH, 10-formyltet 33.8 78 0.0027 28.2 6.3 83 91-193 27-131 (329)
70 1fy2_A Aspartyl dipeptidase; s 33.7 55 0.0019 27.3 5.0 30 123-152 55-87 (229)
71 1x7d_A Ornithine cyclodeaminas 32.0 46 0.0016 29.8 4.5 26 129-154 179-204 (350)
72 3kb6_A D-lactate dehydrogenase 31.8 1.3E+02 0.0045 26.6 7.4 45 136-192 186-230 (334)
73 1pzg_A LDH, lactate dehydrogen 30.6 60 0.002 28.6 4.9 24 129-152 63-86 (331)
74 3ond_A Adenosylhomocysteinase; 30.4 1.7E+02 0.0059 27.8 8.4 29 171-199 331-359 (488)
75 2ekl_A D-3-phosphoglycerate de 30.3 70 0.0024 27.9 5.3 26 125-153 180-205 (313)
76 2dbq_A Glyoxylate reductase; D 30.3 81 0.0028 27.7 5.8 26 124-152 187-212 (334)
77 4e5n_A Thermostable phosphite 29.6 47 0.0016 29.4 4.1 52 125-191 184-235 (330)
78 3jtm_A Formate dehydrogenase, 28.9 1.1E+02 0.0037 27.5 6.4 33 120-152 31-70 (351)
79 3pid_A UDP-glucose 6-dehydroge 28.5 64 0.0022 30.0 4.9 34 119-152 84-117 (432)
80 1gdh_A D-glycerate dehydrogena 27.9 73 0.0025 27.9 5.0 45 106-153 166-211 (320)
81 1ygy_A PGDH, D-3-phosphoglycer 27.7 77 0.0026 29.8 5.4 26 125-153 180-205 (529)
82 3oet_A Erythronate-4-phosphate 26.6 1.9E+02 0.0066 26.4 7.8 49 136-192 162-210 (381)
83 3evt_A Phosphoglycerate dehydr 25.9 1.4E+02 0.0047 26.4 6.5 44 136-191 183-226 (324)
84 3hdj_A Probable ornithine cycl 25.6 37 0.0013 29.9 2.7 61 93-154 127-193 (313)
85 2i99_A MU-crystallin homolog; 24.7 64 0.0022 27.9 4.0 45 109-153 159-205 (312)
86 1oju_A MDH, malate dehydrogena 24.2 88 0.003 27.3 4.8 23 129-152 55-77 (294)
87 3l07_A Bifunctional protein fo 23.9 87 0.003 27.8 4.7 30 123-152 179-212 (285)
88 3pp8_A Glyoxylate/hydroxypyruv 23.8 1.3E+02 0.0046 26.4 6.0 17 136-152 185-201 (315)
89 1vl6_A Malate oxidoreductase; 23.6 86 0.0029 29.1 4.8 38 135-189 254-291 (388)
90 1x13_A NAD(P) transhydrogenase 23.5 1.5E+02 0.0052 26.7 6.4 46 138-195 249-296 (401)
91 2o4c_A Erythronate-4-phosphate 23.3 74 0.0025 29.1 4.2 48 136-192 159-207 (380)
92 1up7_A 6-phospho-beta-glucosid 23.2 50 0.0017 30.4 3.1 23 130-152 59-81 (417)
93 1qp8_A Formate dehydrogenase; 23.2 2.7E+02 0.0091 24.1 7.7 17 136-152 166-182 (303)
94 3dcm_X AdoMet, uncharacterized 23.1 52 0.0018 27.7 2.9 56 97-152 29-112 (192)
95 4h7p_A Malate dehydrogenase; s 22.9 87 0.003 28.2 4.6 23 130-152 86-108 (345)
96 1omo_A Alanine dehydrogenase; 22.9 91 0.0031 27.2 4.6 24 129-154 174-197 (322)
97 1xdw_A NAD+-dependent (R)-2-hy 22.8 2.5E+02 0.0086 24.5 7.6 44 137-192 191-234 (331)
98 3da8_A Probable 5'-phosphoribo 22.7 2.1E+02 0.0073 23.9 6.8 81 94-192 21-120 (215)
99 2nac_A NAD-dependent formate d 22.6 1.3E+02 0.0044 27.6 5.7 27 125-153 230-256 (393)
100 2d0i_A Dehydrogenase; structur 22.1 99 0.0034 27.2 4.8 27 124-153 183-209 (333)
101 1s6y_A 6-phospho-beta-glucosid 22.1 65 0.0022 30.0 3.7 24 129-152 68-91 (450)
102 3k5p_A D-3-phosphoglycerate de 22.0 2E+02 0.0068 26.6 7.0 30 123-152 173-216 (416)
103 3p2o_A Bifunctional protein fo 21.6 1E+02 0.0036 27.3 4.8 30 123-152 178-211 (285)
104 2j6i_A Formate dehydrogenase; 21.5 1.3E+02 0.0045 26.9 5.5 28 124-153 203-230 (364)
105 2cuk_A Glycerate dehydrogenase 21.4 2.6E+02 0.0089 24.2 7.3 30 123-152 161-201 (311)
106 4a7p_A UDP-glucose dehydrogena 20.5 80 0.0028 29.3 4.0 24 129-152 69-92 (446)
107 1l7d_A Nicotinamide nucleotide 20.5 1.9E+02 0.0065 25.7 6.3 77 102-189 188-291 (384)
108 1u8x_X Maltose-6'-phosphate gl 20.3 74 0.0025 29.9 3.7 24 129-152 87-110 (472)
No 1
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=100.00 E-value=3.5e-37 Score=280.66 Aligned_cols=148 Identities=36% Similarity=0.526 Sum_probs=130.1
Q ss_pred ceeccCCCccccCccchh----------hhHHHh-hccCcccccccChHHH------HHHHHhCCCEEEEEcCHHHhhCc
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIES-QQFDRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVASK 144 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~A-~~~~~~~L~va~P~~i------~e~l~~~G~~v~~~~D~~EAl~~ 144 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++ .+.+++.|+++++++|++||+++
T Consensus 143 l~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~ 221 (308)
T 1ml4_A 143 LYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVE-LYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGK 221 (308)
T ss_dssp HHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEE-EEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTT
T ss_pred HHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCE-EEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcC
Confidence 356777666667888887 455555 689998 999999766 46677889999999999999999
Q ss_pred CCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhcHHHHHHH
Q 026841 145 CDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMAL 224 (232)
Q Consensus 145 ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~dsp~S~if~QAeNrL~vrmAL 224 (232)
||||||||||+||+++. +++.+++.+||||.++|+.+++|++||||||||+||+++|+++|+|+||+||+||+|+||||
T Consensus 222 aDvvyt~~~q~er~~~~-~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~if~QaeNrl~~r~Al 300 (308)
T 1ml4_A 222 LDVLYVTRIQKERFPDE-QEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMAL 300 (308)
T ss_dssp CSEEEECCCCGGGSSSH-HHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSSSBCGGGGGSTTBCHHHHHHTHHHHHHHH
T ss_pred CCEEEECCccccccCCH-HHHHHHhcCcccCHHHHhhcCCCCEEECCCCCCCeecHHHhCCCchHHHHHHhcCHHHHHHH
Confidence 99999999999997643 56767778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 026841 225 LKLLLVG 231 (232)
Q Consensus 225 L~~lLg~ 231 (232)
|.+++++
T Consensus 301 L~~ll~~ 307 (308)
T 1ml4_A 301 LALVLGV 307 (308)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9999875
No 2
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=100.00 E-value=2.9e-37 Score=280.20 Aligned_cols=148 Identities=31% Similarity=0.506 Sum_probs=129.6
Q ss_pred ceeccCCCccccCccchh----------hhHHHh-hcc-CcccccccChHHHH---HHHHhCCCEEEEEcCHHHhhCcCC
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIES-QQF-DRDILNAIFEDDIK---DYLTSQGVEWEESADLMEVASKCD 146 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~A-~~~-~~~~L~va~P~~i~---e~l~~~G~~v~~~~D~~EAl~~AD 146 (232)
.++|.+..+=..|.|+.| +|++.+ +.| |++ +++++|+++. +++++.|+++++++|++||+++||
T Consensus 137 l~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aD 215 (299)
T 1pg5_A 137 IYTINKHFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKL-VYLISPQLLRARKEILDELNYPVKEVENPFEVINEVD 215 (299)
T ss_dssp HHHHHHHHSCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSE-EEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCS
T ss_pred HHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCE-EEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCC
Confidence 356666665567888877 466555 688 998 9999999883 446788999999999999999999
Q ss_pred EEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhcHHHHHHHHH
Q 026841 147 VVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLK 226 (232)
Q Consensus 147 VVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~ 226 (232)
||||||||+||+++. +++.+++.+||||.++|+.+++|++||||||||+||+++|+++|+|+||+||+||+|+|||||.
T Consensus 216 vvyt~~~q~er~~~~-~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~vf~QaeNrl~~r~AlL~ 294 (299)
T 1pg5_A 216 VLYVTRIQKERFVDE-MEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILT 294 (299)
T ss_dssp EEEEECCCSTTSSCH-HHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSSSBCGGGGGSTTBCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccCH-HHHHHhhcCcccCHHHHHhcCCCCEEECCCCCCCccCHHHhCCcccHHHHHHHhCHHHHHHHHH
Confidence 999999999997543 5677778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 026841 227 LLLVG 231 (232)
Q Consensus 227 ~lLg~ 231 (232)
+++++
T Consensus 295 ~ll~~ 299 (299)
T 1pg5_A 295 KIYGE 299 (299)
T ss_dssp HHHCC
T ss_pred HHhcC
Confidence 99874
No 3
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=100.00 E-value=6e-37 Score=279.85 Aligned_cols=150 Identities=18% Similarity=0.239 Sum_probs=131.5
Q ss_pred ceeccCCCccccCccchh--------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHHhh
Q 026841 82 AVETQSTPSFTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~EAl 142 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++ .+ ++++.|+++++++|++||+
T Consensus 143 l~Ti~e~~g~l~gl~va~vGD~~rva~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav 221 (315)
T 1pvv_A 143 YMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGAD-VVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAV 221 (315)
T ss_dssp HHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHTTCE-EEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHT
T ss_pred HHHHHHHhCCcCCcEEEEECCCcchHHHHHHHHHHCCCE-EEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHh
Confidence 356666666567888888 466655 689998 999999654 23 3347899999999999999
Q ss_pred CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHH
Q 026841 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYI 220 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~v 220 (232)
++|||||||+||+||++++.+++.+++.+||||.++|+.+++|++|||||| ||+||++||+++|+|+||+||+||+|+
T Consensus 222 ~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~vf~QaeNrl~~ 301 (315)
T 1pvv_A 222 KDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHA 301 (315)
T ss_dssp TTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHH
T ss_pred CCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHHHhCCCccHHHHHHhhCHHH
Confidence 999999999999999866567788899999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 026841 221 RMALLKLLLVGW 232 (232)
Q Consensus 221 rmALL~~lLg~~ 232 (232)
|||||.+++++|
T Consensus 302 r~AlL~~ll~~~ 313 (315)
T 1pvv_A 302 QKAVLALVMGGI 313 (315)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhccc
Confidence 999999999876
No 4
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=100.00 E-value=8.6e-37 Score=278.36 Aligned_cols=147 Identities=32% Similarity=0.573 Sum_probs=115.5
Q ss_pred ceeccCCCccccCccchh----------hhHHHh-hcc-CcccccccChHHH------HHHHHhCCCEEEEEcCHHHhhC
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIES-QQF-DRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVAS 143 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~A-~~~-~~~~L~va~P~~i------~e~l~~~G~~v~~~~D~~EAl~ 143 (232)
.++|.+..+=..|.|+.| +|++.+ +.| |++ +++++|+++ .+.+++.|+++++++|++||++
T Consensus 142 l~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~ 220 (310)
T 3csu_A 142 LFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNR-FYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMA 220 (310)
T ss_dssp HHHHHHHHSCSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCE-EEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTT
T ss_pred HHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCE-EEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhc
Confidence 356666666567888877 355555 688 998 999999766 3667788999999999999999
Q ss_pred cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhcHHHHHH
Q 026841 144 KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMA 223 (232)
Q Consensus 144 ~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~dsp~S~if~QAeNrL~vrmA 223 (232)
+||||||||||.||+ + .+++.+++.+||||.++|+.+++|++||||||||+||+++|+++|+|+||+||+||+|+|||
T Consensus 221 ~aDvvyt~~~q~er~-~-~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~eV~d~p~s~vf~QaeNrl~~r~A 298 (310)
T 3csu_A 221 EVDILYMTRVQKERL-D-PSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQA 298 (310)
T ss_dssp TCSEEEECC-------------------CCBCGGGGTTCCTTCEEECCSCCSSSBCHHHHTSTTBCHHHHHHTHHHHHHH
T ss_pred CCCEEEECCcccccc-C-HHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCeecHHHhCCCccHHHHHHHhCHHHHHH
Confidence 999999999999987 2 35666777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 026841 224 LLKLLLVG 231 (232)
Q Consensus 224 LL~~lLg~ 231 (232)
||.+++++
T Consensus 299 lL~~ll~~ 306 (310)
T 3csu_A 299 LLALVLNR 306 (310)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhcc
Confidence 99999874
No 5
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=100.00 E-value=1e-36 Score=279.29 Aligned_cols=149 Identities=21% Similarity=0.259 Sum_probs=123.0
Q ss_pred ceeccCCCccccCccchh--------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHHhh
Q 026841 82 AVETQSTPSFTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~EAl 142 (232)
.++|.+..+=..|.|+.| +|++.+ +.+|++ +++++|+++ .+ ++++.|+++++++|++||+
T Consensus 145 l~Ti~e~~g~l~glkva~vGD~~rva~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav 223 (323)
T 3gd5_A 145 LLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMS-IAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAA 223 (323)
T ss_dssp HHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCE-EEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHh
Confidence 356776666667999988 466654 678998 999999654 22 3346799999999999999
Q ss_pred CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHH
Q 026841 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYI 220 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~v 220 (232)
++||||||||||+||++++.+++.+++.+||||.++|+.+++|++|||||| ||+||+++|+++|+|+||+||+||+|+
T Consensus 224 ~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~eV~d~p~S~if~QaeNrl~~ 303 (323)
T 3gd5_A 224 RGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHA 303 (323)
T ss_dssp TTCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHH
T ss_pred cCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHHHhCCCchhHHHHHhccHHH
Confidence 999999999999999876556677899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 026841 221 RMALLKLLLVG 231 (232)
Q Consensus 221 rmALL~~lLg~ 231 (232)
|||||.+++++
T Consensus 304 r~AlL~~ll~~ 314 (323)
T 3gd5_A 304 QKAVLAALMGG 314 (323)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999999974
No 6
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=100.00 E-value=2e-36 Score=279.14 Aligned_cols=148 Identities=17% Similarity=0.177 Sum_probs=125.0
Q ss_pred ceeccCCCccccCccchh--------hhHHHh-hccCcccccccChHHH------H----HHHHhCCCEEEEEcCHHHhh
Q 026841 82 AVETQSTPSFTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDI------K----DYLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~----e~l~~~G~~v~~~~D~~EAl 142 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++ . +++++.|+++++++|++||+
T Consensus 167 l~TI~E~~G~l~glkva~vGD~~nva~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav 245 (340)
T 4ep1_A 167 LMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMH-MTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAV 245 (340)
T ss_dssp HHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCE-EEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCchhHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHh
Confidence 356777766678999988 566655 678998 999999654 2 23457899999999999999
Q ss_pred CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHH
Q 026841 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYI 220 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~v 220 (232)
++||||||||||+||++++ +++.+++.+||||.++|+.+++|++|||||| ||+||++||+++|+|+||+||+||+|+
T Consensus 246 ~~aDVvyt~~w~smg~e~~-~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~p~S~if~QaeNrl~~ 324 (340)
T 4ep1_A 246 NEADFIYTDVWMSMGQEGE-EEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHA 324 (340)
T ss_dssp TTCSEEEECCC------CH-HHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHH
T ss_pred CCCCEEEecCccCCCCCch-HHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHHHhCCCchhHHHHHhcCHHH
Confidence 9999999999999998765 6777888999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 026841 221 RMALLKLLLVG 231 (232)
Q Consensus 221 rmALL~~lLg~ 231 (232)
|||||.+++++
T Consensus 325 rmAlL~~ll~~ 335 (340)
T 4ep1_A 325 QKALLVSLFKN 335 (340)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcc
Confidence 99999999975
No 7
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=100.00 E-value=4.8e-36 Score=272.96 Aligned_cols=145 Identities=30% Similarity=0.543 Sum_probs=127.5
Q ss_pred ceeccCCCccccCccchh----------hhHHHh-hcc-CcccccccChHHH------HHHHHhCCCEEEEEcCHHHhhC
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIES-QQF-DRDILNAIFEDDI------KDYLTSQGVEWEESADLMEVAS 143 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~A-~~~-~~~~L~va~P~~i------~e~l~~~G~~v~~~~D~~EAl~ 143 (232)
.++|.+..+=..|.|+.| +|++.+ +.| |++ +++++|+++ .+.+++.|+++++++|++||++
T Consensus 139 l~Ti~e~~g~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~ 217 (306)
T 4ekn_B 139 LYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVE-MYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDD 217 (306)
T ss_dssp HHHHHHHHSCSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCE-EEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCT
T ss_pred HHHHHHHhCCcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCE-EEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhc
Confidence 356776666567888877 355554 678 998 999999766 3567788999999999999999
Q ss_pred cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccCCCCchHHHHHhhcHHHHHH
Q 026841 144 KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMA 223 (232)
Q Consensus 144 ~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~dsp~S~if~QAeNrL~vrmA 223 (232)
+||||||+|||+||+++. +++.+.+.+||||.++|+. +|++||||||||+||+++|+++|+|+||+||+||+|+|||
T Consensus 218 ~aDvvy~~~~q~er~~~~-~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg~EI~~eV~d~p~s~vf~QaeNrl~~r~A 294 (306)
T 4ekn_B 218 DIDVLYVTRIQKERFPDP-NEYEKVKGSYKIKREYVEG--KKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMA 294 (306)
T ss_dssp TCSEEEECCCCGGGCCSH-HHHHHHHHHHCBCHHHHTT--CCCEEECCSCCSSSBCGGGTTSTTBCHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCcccccCCCH-HHHHHhccCcEECHHHHcC--CCCEEECCCCCCCeecHhHhCCCcccHHHHHhcCHHHHHH
Confidence 999999999999998654 5677888899999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 026841 224 LLKLLLV 230 (232)
Q Consensus 224 LL~~lLg 230 (232)
||.++++
T Consensus 295 lL~~ll~ 301 (306)
T 4ekn_B 295 ILKKLIE 301 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999987
No 8
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=100.00 E-value=3.8e-36 Score=273.71 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=127.2
Q ss_pred eeccCCCccccCccchh---------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHHhh
Q 026841 83 VETQSTPSFTIGKKFQL---------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 83 ~~~~~~~~~~~~~k~~l---------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~EAl 142 (232)
++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++ .+ ++++.|+++++++|++||+
T Consensus 137 ~Ti~e~~g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav 215 (307)
T 2i6u_A 137 QTIAERKGALRGLRLSYFGDGANNMAHSLLLGGVTAGIH-VTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAA 215 (307)
T ss_dssp HHHHHHHSCCTTCEEEEESCTTSHHHHHHHHHHHHTTCE-EEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHhCCcCCeEEEEECCCCcCcHHHHHHHHHHCCCE-EEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHh
Confidence 45655555556888777 455555 689998 999999654 23 3347899999999999999
Q ss_pred CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHH
Q 026841 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYI 220 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~v 220 (232)
++|||||||+|++||++.+.+++.+++.+||||.++|+.+++|++|||||| ||+||++||+++|+|+||+||+||+|+
T Consensus 216 ~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~ 295 (307)
T 2i6u_A 216 AGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHA 295 (307)
T ss_dssp TTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHH
T ss_pred cCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHhHhCCcccHHHHHHhcCHHH
Confidence 999999999999998765555666888999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 026841 221 RMALLKLLLVG 231 (232)
Q Consensus 221 rmALL~~lLg~ 231 (232)
|||||.++++.
T Consensus 296 r~AlL~~ll~~ 306 (307)
T 2i6u_A 296 QKALLVWLLER 306 (307)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcc
Confidence 99999999874
No 9
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=100.00 E-value=9.1e-36 Score=271.32 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=130.3
Q ss_pred ceeccCCCcccc-Cccchh--------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHHh
Q 026841 82 AVETQSTPSFTI-GKKFQL--------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEV 141 (232)
Q Consensus 82 ~~~~~~~~~~~~-~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~EA 141 (232)
.++|.+..+=.. |.|+.| +|++.+ +.||++ +++++|+++ .+ ++++.|+++++++|++||
T Consensus 133 l~Ti~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~ea 211 (307)
T 3tpf_A 133 LFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFE-ISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEA 211 (307)
T ss_dssp HHHHHHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCE-EEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCE-EEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH
Confidence 357777766556 999888 566655 688998 999999655 23 334789999999999999
Q ss_pred hCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHH
Q 026841 142 ASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLY 219 (232)
Q Consensus 142 l~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~ 219 (232)
+++|||||||+|++++++.+.+++.+++.+||||.++|+.+++|++|||||| ||+||+++|+++|+|+||+||+||+|
T Consensus 212 v~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~eV~d~p~s~if~QaeNrl~ 291 (307)
T 3tpf_A 212 LKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLY 291 (307)
T ss_dssp HTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHHHTHHHHHHHHHHHHH
T ss_pred hcCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHHHhCCCcchHHHHHHcCHH
Confidence 9999999999999988765556777899999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 026841 220 IRMALLKLLLVG 231 (232)
Q Consensus 220 vrmALL~~lLg~ 231 (232)
+|||||.+++++
T Consensus 292 ~r~AlL~~ll~~ 303 (307)
T 3tpf_A 292 VVKALLCFLDNQ 303 (307)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhh
Confidence 999999999974
No 10
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=100.00 E-value=9.6e-36 Score=273.05 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=118.9
Q ss_pred eeccCCCccccCccchh---------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHHhh
Q 026841 83 VETQSTPSFTIGKKFQL---------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 83 ~~~~~~~~~~~~~k~~l---------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~EAl 142 (232)
++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++ .+ ++++.|+++++++|++||+
T Consensus 156 ~Ti~e~~g~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~-v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav 234 (325)
T 1vlv_A 156 MTIEENFGRLKGVKVVFMGDTRNNVATSLMIACAKMGMN-FVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEAL 234 (325)
T ss_dssp HHHHHHHSCSTTCEEEEESCTTSHHHHHHHHHHHHTTCE-EEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHH
T ss_pred HHHHHHhCCcCCcEEEEECCCCcCcHHHHHHHHHHCCCE-EEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHH
Confidence 45665555556888777 355554 689998 999999765 22 3347899999999999999
Q ss_pred CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhc-CCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHH
Q 026841 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVM-QKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLY 219 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~A-k~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~ 219 (232)
++|||||||+||+||++++.+++.+++.+||||.++|+.+ ++|++|||||| ||+||++||+++|+|+||+||+||+|
T Consensus 235 ~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~eV~d~p~S~if~QaeNrl~ 314 (325)
T 1vlv_A 235 AGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKH 314 (325)
T ss_dssp TTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHH
T ss_pred ccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHHHhCCCcchHHHHHhccHH
Confidence 9999999999999987655566678899999999999999 99999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 026841 220 IRMALLKLLL 229 (232)
Q Consensus 220 vrmALL~~lL 229 (232)
+|||||.+++
T Consensus 315 ~rmAlL~~ll 324 (325)
T 1vlv_A 315 TIKAVMIATL 324 (325)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999986
No 11
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=100.00 E-value=1.1e-35 Score=272.77 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=121.4
Q ss_pred eeccCCCc-------cccCccchh---------hhHHHh-hccCcccccccChHHHH--------H----HHHh--CCCE
Q 026841 83 VETQSTPS-------FTIGKKFQL---------DDVIES-QQFDRDILNAIFEDDIK--------D----YLTS--QGVE 131 (232)
Q Consensus 83 ~~~~~~~~-------~~~~~k~~l---------~~li~A-~~~~~~~L~va~P~~i~--------e----~l~~--~G~~ 131 (232)
++|.+..+ =..|.|+.| +|++.+ +.||.+ +++++|+++. + ++++ .|++
T Consensus 143 ~Ti~e~~g~~~~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~-v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (328)
T 3grf_A 143 MTIKEKFTAAGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALLGME-CHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGS 221 (328)
T ss_dssp HHHHHHHHHTTCCTTTGGGCCEEEESCCSSHHHHHHHHHHHHHTCE-EEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHhCCccccccccCCcEEEEeCCCCcchHHHHHHHHHHcCCE-EEEECChHhhhCCCHHHHHHHHHHHhhccCCCe
Confidence 45555544 346777776 466654 678998 9999997654 2 2334 7999
Q ss_pred EEEEcCHHHhhCcCCEEEEccccccc-cCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCc
Q 026841 132 WEESADLMEVASKCDVVYQTRIQRER-FGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRA 208 (232)
Q Consensus 132 v~~~~D~~EAl~~ADVVYtdrwqsEr-~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S 208 (232)
+++++|++||+++|||||||+|.++| +.++.+++.+++.+||||.++|+.+++|++|||||| ||+||++||+++|+|
T Consensus 222 v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~eV~d~p~S 301 (328)
T 3grf_A 222 IKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKS 301 (328)
T ss_dssp EEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHHHHTSTTB
T ss_pred EEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHHHhCCCch
Confidence 99999999999999999999999988 665556778889999999999999999999999999 999999999999999
Q ss_pred hHHHHHhhcHHHHHHHHHHHhcC
Q 026841 209 AYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 209 ~if~QAeNrL~vrmALL~~lLg~ 231 (232)
+||+||+||+|+|||||.++++.
T Consensus 302 ~if~QaeNrl~~r~AlL~~ll~~ 324 (328)
T 3grf_A 302 VCYDEAGNRLHSAMAVLDFFLHD 324 (328)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHhhCHHHHHHHHHHHHhh
Confidence 99999999999999999999974
No 12
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=100.00 E-value=4.9e-35 Score=269.11 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=129.0
Q ss_pred ceeccCC-Cc-cccCccchh---------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHH
Q 026841 82 AVETQST-PS-FTIGKKFQL---------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLM 139 (232)
Q Consensus 82 ~~~~~~~-~~-~~~~~k~~l---------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~ 139 (232)
.++|.+. .+ =..|.|+.| +|++.+ +.||++ ++++.|+++ .+ ++++.|+++++++|++
T Consensus 141 l~Ti~e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~-v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ 219 (333)
T 1duv_G 141 LLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLD-LRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVA 219 (333)
T ss_dssp HHHHHHHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCE-EEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHH
T ss_pred HHHHHHHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHH
Confidence 3567766 55 456788777 455554 689998 999999765 22 3348899999999999
Q ss_pred HhhCcCCEEEEccccccccCCC-hhHHHHhhcCCccCHHHHHhc-CCCcEEeCCCC--------------------CCcc
Q 026841 140 EVASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVLRVM-QKHAVVLHPLP--------------------RLDE 197 (232)
Q Consensus 140 EAl~~ADVVYtdrwqsEr~~~~-~~e~~~~~~~YqVt~elL~~A-k~dai~MHcLP--------------------Rg~E 197 (232)
||+++|||||||+|++|+++.+ ..++.+++.+||||.++|+.+ ++|++|||||| ||+|
T Consensus 220 eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~~~~~~~~~~~Rg~E 299 (333)
T 1duv_G 220 KGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGME 299 (333)
T ss_dssp HHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCCSSCSHHHHHHHHHTTCCSBSS
T ss_pred HHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCCCCCccccccchhhhccccCCCCce
Confidence 9999999999999999988765 567778999999999999999 99999999999 7899
Q ss_pred ccccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 198 ITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 198 Is~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
|+++|+++|+|+||+||+||+|+|||||.+++++
T Consensus 300 It~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~ 333 (333)
T 1duv_G 300 VTDEVFESAASIVFDQAENRMHTIKAVMVATLSK 333 (333)
T ss_dssp BBHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eCHHHhCCCcchHHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999874
No 13
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=100.00 E-value=4.8e-35 Score=269.36 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=129.7
Q ss_pred ceeccCCCc-cccCccchh---------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHH
Q 026841 82 AVETQSTPS-FTIGKKFQL---------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLME 140 (232)
Q Consensus 82 ~~~~~~~~~-~~~~~k~~l---------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~E 140 (232)
.++|.+..+ =..|.|+.| +|++.+ +.||++ ++++.|+++ .+ ++++.|+++++++|++|
T Consensus 142 l~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~-v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~e 220 (335)
T 1dxh_A 142 VLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMD-VRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKE 220 (335)
T ss_dssp HHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCE-EEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHH
T ss_pred HHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHH
Confidence 457777766 557888877 455554 689998 999999765 22 33478999999999999
Q ss_pred hhCcCCEEEEccccccccCCC-hhHHHHhhcCCccCHHHHHhc-CCCcEEeCCCC---------------------CCcc
Q 026841 141 VASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVLRVM-QKHAVVLHPLP---------------------RLDE 197 (232)
Q Consensus 141 Al~~ADVVYtdrwqsEr~~~~-~~e~~~~~~~YqVt~elL~~A-k~dai~MHcLP---------------------Rg~E 197 (232)
|+++|||||||+|++|+++.+ ..++.+++.+||||.++|+.+ ++|++|||||| ||+|
T Consensus 221 av~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~~~~~~~~~~~~Rg~E 300 (335)
T 1dxh_A 221 AVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIE 300 (335)
T ss_dssp HTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCCCCSSSSHHHHHHHHHCGGGGGBSS
T ss_pred HhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCCCCccccccchhhhhhcccCCCCcE
Confidence 999999999999999988765 567778999999999999999 99999999999 6899
Q ss_pred ccccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 198 ITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 198 Is~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
|++||+++|+|+||+||+||+|+|||||.+++++
T Consensus 301 It~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~ 334 (335)
T 1dxh_A 301 VTEDVFESPYNIAFEQAENRMHTIKAILVSTLAD 334 (335)
T ss_dssp BBHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ecHHHhCCccchHHHHHhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999975
No 14
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=100.00 E-value=6.8e-36 Score=272.34 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=121.3
Q ss_pred ceeccCCCccccCccchh--------hhHHHh-hccCcccccccChHHHH---HH-HHhCCCEEEEEcCHHHhhCcCCEE
Q 026841 82 AVETQSTPSFTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDIK---DY-LTSQGVEWEESADLMEVASKCDVV 148 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i~---e~-l~~~G~~v~~~~D~~EAl~~ADVV 148 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++. ++ .++.|.++++++|++||+++||||
T Consensus 142 l~Ti~e~~g~l~glkva~vGD~~~va~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvv 220 (309)
T 4f2g_A 142 IFTYYEHRGPIRGKTVAWVGDANNMLYTWIQAARILDFK-LQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLV 220 (309)
T ss_dssp HHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCE-EEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEE
T ss_pred HHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEE
Confidence 356777666667999888 566654 688998 9999998883 22 235788999999999999999999
Q ss_pred EEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHH
Q 026841 149 YQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLK 226 (232)
Q Consensus 149 YtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~ 226 (232)
|||+|.+++++.+.+++.+++.+||||.++|+.+++|++|||||| ||+||++||+++|+|+||+||+||+|+|||||.
T Consensus 221 yt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~r~AlL~ 300 (309)
T 4f2g_A 221 TTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVVWDEAENRLHVQKALME 300 (309)
T ss_dssp EECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHH
T ss_pred EecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecHHHhCCCcchHHHHHHcCHHHHHHHHH
Confidence 999999988754445666788999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHhcC
Q 026841 227 LLLVG 231 (232)
Q Consensus 227 ~lLg~ 231 (232)
+++++
T Consensus 301 ~ll~~ 305 (309)
T 4f2g_A 301 FLLLG 305 (309)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 99974
No 15
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=4.9e-35 Score=265.85 Aligned_cols=145 Identities=19% Similarity=0.167 Sum_probs=117.8
Q ss_pred eeccCCCccccCccchh--------hhHHHh-hccCcccccccChHHHH---HHHHhCCCEEEEEcCHHHhhCcCCEEEE
Q 026841 83 VETQSTPSFTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDIK---DYLTSQGVEWEESADLMEVASKCDVVYQ 150 (232)
Q Consensus 83 ~~~~~~~~~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i~---e~l~~~G~~v~~~~D~~EAl~~ADVVYt 150 (232)
++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++. +.+...+ +++++|++||+++||||||
T Consensus 143 ~Ti~e~~g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~--~~~~~d~~eav~~aDvvy~ 219 (301)
T 2ef0_A 143 LTLKEVFGGLAGLEVAWVGDGNNVLNSLLEVAPLAGLK-VRVATPKGYEPDPGLLKRAN--AFFTHDPKEAALGAHALYT 219 (301)
T ss_dssp HHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCE-EEEECCTTCCCCHHHHHHHT--CEEESCHHHHHTTCSEEEE
T ss_pred HHHHHHhCCcCCcEEEEECCCchhHHHHHHHHHHcCCE-EEEECCchhcCCHHHHhhce--eEEECCHHHHhcCCCEEEe
Confidence 46666655567888887 466655 689998 9999997762 2332223 6689999999999999999
Q ss_pred ccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHHHH
Q 026841 151 TRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228 (232)
Q Consensus 151 drwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~l 228 (232)
|+||+++++.+..++.+++.+||||.++|+.+++|++|||||| ||+||+++|+++|+|+||+||+||+|+|||||.++
T Consensus 220 ~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~rmAlL~~l 299 (301)
T 2ef0_A 220 DVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLLTL 299 (301)
T ss_dssp CCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHHHhCCCcchHHHHHhcCHHHHHHHHHHH
Confidence 9999987755445667889999999999999999999999999 89999999999999999999999999999999998
Q ss_pred hc
Q 026841 229 LV 230 (232)
Q Consensus 229 Lg 230 (232)
++
T Consensus 300 l~ 301 (301)
T 2ef0_A 300 LK 301 (301)
T ss_dssp HC
T ss_pred hC
Confidence 75
No 16
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=100.00 E-value=4.9e-34 Score=263.04 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=127.9
Q ss_pred ceeccCCC--c-cccCccchh--------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHH
Q 026841 82 AVETQSTP--S-FTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLM 139 (232)
Q Consensus 82 ~~~~~~~~--~-~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~ 139 (232)
.++|.+.. + =..|.|+.| +|++.+ +.||++ +++++|+++ .+ ++++.|.++++++|++
T Consensus 160 l~Ti~e~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ 238 (339)
T 4a8t_A 160 LCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMN-FVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS 238 (339)
T ss_dssp HHHHHHTCCTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCE-EEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred HHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh
Confidence 35777776 5 467999988 566654 789998 999999654 22 3456799999999999
Q ss_pred HhhCcCCEEEEccccccccCCCh-hHHHHhhcC-CccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHh
Q 026841 140 EVASKCDVVYQTRIQRERFGERT-DLYEEARGK-YIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAK 215 (232)
Q Consensus 140 EAl~~ADVVYtdrwqsEr~~~~~-~e~~~~~~~-YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAe 215 (232)
|+++||||||++|.+++++++. +++.+++.+ ||||.++|+.+++|++|||||| ||+||++||+++|+|+||+||+
T Consensus 239 -av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~eV~d~p~S~if~Qae 317 (339)
T 4a8t_A 239 -SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAE 317 (339)
T ss_dssp -GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHH
T ss_pred -HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHHHhCCCcchHHHHHh
Confidence 9999999999999998776655 566677777 9999999999999999999999 9999999999999999999999
Q ss_pred hcHHHHHHHHHHHhcC
Q 026841 216 NGLYIRMALLKLLLVG 231 (232)
Q Consensus 216 NrL~vrmALL~~lLg~ 231 (232)
||+|+|||||.+++++
T Consensus 318 Nrl~~r~AlL~~ll~~ 333 (339)
T 4a8t_A 318 NRLTSIRGLLVYLMND 333 (339)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999999874
No 17
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=100.00 E-value=2.9e-34 Score=266.35 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=127.9
Q ss_pred ceeccCCCccccCccchh---------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHHh
Q 026841 82 AVETQSTPSFTIGKKFQL---------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEV 141 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l---------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~EA 141 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ ++++.|+++ .+ ++++.|+++++++|++||
T Consensus 164 l~Ti~E~~g~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~-v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea 242 (359)
T 2w37_A 164 FMTVKENFGKLQGLTLTFMGDGRNNVANSLLVTGAILGVN-IHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEG 242 (359)
T ss_dssp HHHHHHHHSCCTTCEEEEESCTTSHHHHHHHHHHHHHTCE-EEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHHHHHHhCCcCCeEEEEECCCccchHHHHHHHHHHcCCE-EEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHH
Confidence 356666666567888877 355554 689998 999999765 22 334789999999999999
Q ss_pred hCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcC---CCcEEeCCCC-------------------CCcccc
Q 026841 142 ASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQ---KHAVVLHPLP-------------------RLDEIT 199 (232)
Q Consensus 142 l~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak---~dai~MHcLP-------------------Rg~EIs 199 (232)
+++|||||||+|++|+++ +.+++.+++.+||||.++|+.++ +|++|||||| ||+||+
T Consensus 243 v~~aDvvytd~w~smg~e-e~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP~~h~~~t~~g~~~~~~~~~Rg~EIt 321 (359)
T 2w37_A 243 LKGSNVVYTDVWVSMGES-NWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVT 321 (359)
T ss_dssp HTTCSEEEECCSCCTTCT-THHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSCCCCSSCSHHHHHHHHHHCCCCCSBC
T ss_pred hcCCCEEEEccccccccc-chHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCCCCcccccccchhhhhccCCCCceec
Confidence 999999999999998775 45677789999999999999999 9999999999 789999
Q ss_pred ccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 200 VDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 200 ~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
++|+++|+|+||+||+||+|+|||||.+++++
T Consensus 322 ~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~ 353 (359)
T 2w37_A 322 DEVFTSKYARQFEEAENRMHSIKAMMAATLGN 353 (359)
T ss_dssp HHHHTSTTBCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCcchHHHHHhhhHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999874
No 18
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=100.00 E-value=1.9e-34 Score=268.09 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=128.4
Q ss_pred ceeccCCCccccCccchh---------hhHHHh-hccCcccccccChHHHH------------HHHHhCCCEEEEEcCHH
Q 026841 82 AVETQSTPSFTIGKKFQL---------DDVIES-QQFDRDILNAIFEDDIK------------DYLTSQGVEWEESADLM 139 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l---------~~li~A-~~~~~~~L~va~P~~i~------------e~l~~~G~~v~~~~D~~ 139 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ ++++.|+++. +++++.|+++++++|++
T Consensus 168 l~Ti~E~~G~l~glkva~vGD~~nnva~Sl~~~~~~lG~~-v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~ 246 (365)
T 4amu_A 168 FMTMKEKFGNLKNKKIVFIGDYKNNVGVSTMIGAAFNGMH-VVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKI 246 (365)
T ss_dssp HHHHHHHHSSCTTCEEEEESSTTSHHHHHHHHHHHHTTCE-EEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCCcchHHHHHHHHHHcCCE-EEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHH
Confidence 357777666677888877 465554 688998 9999996542 23567899999999999
Q ss_pred HhhCcCCEEEEccccccccCCC-hhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--C----------------------
Q 026841 140 EVASKCDVVYQTRIQRERFGER-TDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--R---------------------- 194 (232)
Q Consensus 140 EAl~~ADVVYtdrwqsEr~~~~-~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--R---------------------- 194 (232)
||+++|||||||+|.+|+++.+ .+++.+++.+||||.++|+.+++|++|||||| |
T Consensus 247 eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP~~R~~~t~~~~~~~~~~~~~~~~~~ 326 (365)
T 4amu_A 247 LAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFSKEVATTLGAKYPIVA 326 (365)
T ss_dssp HHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSCCCCSSCSHHHHHHHHHSSSSCGGGG
T ss_pred HHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCccccchhhhhhhhccccccccc
Confidence 9999999999999999887654 45677899999999999999999999999999 6
Q ss_pred --CccccccccCCCCchHHHHHhhcHHHHHHHHHHHhc
Q 026841 195 --LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230 (232)
Q Consensus 195 --g~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~lLg 230 (232)
|+||++||+++|+|+||+|||||+|+|||||.++||
T Consensus 327 ~~g~EIt~eV~d~p~S~if~QaeNrl~~~kAvL~~llg 364 (365)
T 4amu_A 327 KGEMEVTDEVFQSLHNKAFDQAENRMHSIKAIILSTIG 364 (365)
T ss_dssp GSCCSBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcEecHHHhCCCcchhHhHHhcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999986
No 19
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=100.00 E-value=6.5e-34 Score=263.48 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=126.1
Q ss_pred eeccCCCc--cccCccchh---------hh-HHHhhccCcccccccChHHHH----------HHHHhCCCEEEEEcCHHH
Q 026841 83 VETQSTPS--FTIGKKFQL---------DD-VIESQQFDRDILNAIFEDDIK----------DYLTSQGVEWEESADLME 140 (232)
Q Consensus 83 ~~~~~~~~--~~~~~k~~l---------~~-li~A~~~~~~~L~va~P~~i~----------e~l~~~G~~v~~~~D~~E 140 (232)
++|.+..+ -..|.|+.| +| +..++.||++ +++++|+++. +++++.|+++++++|++|
T Consensus 168 ~Ti~e~~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~-v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~e 246 (358)
T 4h31_A 168 LTMLEHSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMD-IRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAE 246 (358)
T ss_dssp HHHHHTTTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCE-EEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHH
T ss_pred HHHHHHhcCCCcCceEEEecCCCCcccchHHHHHHHhcCce-EEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHH
Confidence 56655543 245677765 34 4455889998 9999996652 345678999999999999
Q ss_pred hhCcCCEEEEccccccccCCCh-hHHHHhhcCCccCHHHHHh-cCCCcEEeCCCC-------------------CCcccc
Q 026841 141 VASKCDVVYQTRIQRERFGERT-DLYEEARGKYIVDQNVLRV-MQKHAVVLHPLP-------------------RLDEIT 199 (232)
Q Consensus 141 Al~~ADVVYtdrwqsEr~~~~~-~e~~~~~~~YqVt~elL~~-Ak~dai~MHcLP-------------------Rg~EIs 199 (232)
|+++|||||||+||+||+..+. +++.+++.+||||.++|+. ++||++|||||| ||+||+
T Consensus 247 av~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~LP~~~n~~~~~~~~~~~~~~~RG~EIt 326 (358)
T 4h31_A 247 GVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIGKQVADKFGMKGLEVT 326 (358)
T ss_dssp HHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECSCCCCSSSSHHHHHHHHHTTCSCSSBC
T ss_pred HhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCCCCCCCcccccchhhhhccCCCceEEC
Confidence 9999999999999999987664 6777899999999999986 689999999999 578999
Q ss_pred ccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 200 VDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 200 ~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
+||+|+|+|+||+||+||+|+|||||.++||.
T Consensus 327 ~eV~d~~~S~if~QaeNrl~~r~AlL~~lLG~ 358 (358)
T 4h31_A 327 EEVFESEHSIVFDEAENRMHTIKAVMVATLGS 358 (358)
T ss_dssp HHHHTSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCccHHHHHHhhhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999984
No 20
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=100.00 E-value=9.1e-34 Score=259.50 Aligned_cols=149 Identities=23% Similarity=0.238 Sum_probs=124.6
Q ss_pred ceeccCCCccccCccchh--------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHHHhh
Q 026841 82 AVETQSTPSFTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLMEVA 142 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~EAl 142 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++ .+ ++++.|+++++++|++||+
T Consensus 143 l~Ti~e~~g~l~gl~va~vGD~~~va~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav 221 (321)
T 1oth_A 143 YLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMH-LQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAA 221 (321)
T ss_dssp HHHHHHHHSCCTTCEEEEESCSSHHHHHHHTTTGGGTCE-EEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHhCCcCCcEEEEECCchhhHHHHHHHHHHcCCe-EEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHh
Confidence 356666555567888887 566665 589998 999999665 23 3336799999999999999
Q ss_pred CcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCC-CccccccccCCCCchHHHHHhhcHHHH
Q 026841 143 SKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPR-LDEITVDVDADPRAAYFRQAKNGLYIR 221 (232)
Q Consensus 143 ~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPR-g~EIs~eV~dsp~S~if~QAeNrL~vr 221 (232)
++|||||||+|.+++++.+..++.+++.+||||.++|+.+++|++||||||+ ++||+++|+++|+|+||+||+||+|+|
T Consensus 222 ~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP~~r~EI~~eV~d~p~S~if~QaeNrl~~r 301 (321)
T 1oth_A 222 HGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTI 301 (321)
T ss_dssp TTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCCCTTTBCHHHHTSTTBCHHHHHHHHHHHH
T ss_pred ccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCCCCCcccCHHHhCCcccHHHHHHHhcHHHH
Confidence 9999999999998776433334446688999999999999999999999993 499999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 026841 222 MALLKLLLVG 231 (232)
Q Consensus 222 mALL~~lLg~ 231 (232)
||||.+++++
T Consensus 302 mAlL~~ll~~ 311 (321)
T 1oth_A 302 MAVMVSLLTD 311 (321)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 21
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=100.00 E-value=1.6e-33 Score=261.44 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=123.4
Q ss_pred ceeccCCCcc--ccCcc--chh------------hhHHHh-hccCcccccccChH-HH------HH----HHHhCCCEEE
Q 026841 82 AVETQSTPSF--TIGKK--FQL------------DDVIES-QQFDRDILNAIFED-DI------KD----YLTSQGVEWE 133 (232)
Q Consensus 82 ~~~~~~~~~~--~~~~k--~~l------------~~li~A-~~~~~~~L~va~P~-~i------~e----~l~~~G~~v~ 133 (232)
.++|.+..+= ..|.| +.| +|++.+ +.||++ +++++|+ ++ .+ ++++.|.+++
T Consensus 176 l~TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~~a~~~g~~v~ 254 (359)
T 1zq6_A 176 ALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMD-VTLLCPTPDYILDERYMDWAAQNVAESGGSLQ 254 (359)
T ss_dssp HHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCE-EEEECSSGGGCCCHHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHHcCCE-EEEEcCccccCCCHHHHHHHHHHHHHcCCeEE
Confidence 3456665554 46777 543 466555 679998 9999998 54 33 3347899999
Q ss_pred EEcCHHHhhCcCCEEEEcccccccc---CCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCc
Q 026841 134 ESADLMEVASKCDVVYQTRIQRERF---GERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRA 208 (232)
Q Consensus 134 ~~~D~~EAl~~ADVVYtdrwqsEr~---~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S 208 (232)
+++|++||+++|||||||+||+|++ +++.+++.+++.+||||.++|+.++ |++|||||| ||+||+++|+++|+|
T Consensus 255 ~~~d~~eav~~aDvVyt~~w~se~~mg~~~~~~~~~~~~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~eV~d~p~S 333 (359)
T 1zq6_A 255 VSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCLPLRRNVKATDAVMDSPNC 333 (359)
T ss_dssp EECCHHHHHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHHTSS-SCEEECCSCCCBTTTBCHHHHTSTTB
T ss_pred EECCHHHHhcCCCEEEECCccccccCCcchhhHHHHHHhcCCCCCHHHHHhCC-CCEEECCCCCCCCceeCHHHhCCCcc
Confidence 9999999999999999999999543 3334678889999999999999999 999999999 999999999999999
Q ss_pred hHHHHHhhcHHHHHHHHHHHhcC
Q 026841 209 AYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 209 ~if~QAeNrL~vrmALL~~lLg~ 231 (232)
+||+||+||+|+|||||.+++++
T Consensus 334 ~if~QaeNrl~~r~AlL~~ll~~ 356 (359)
T 1zq6_A 334 IAIDEAENRLHVQKAIMAALVGQ 356 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHhcCHHHHHHHHHHHhcc
Confidence 99999999999999999999874
No 22
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=100.00 E-value=1e-33 Score=262.38 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=127.2
Q ss_pred ceeccCCC--c-cccCccchh--------hhHHHh-hccCcccccccChHHH------HH----HHHhCCCEEEEEcCHH
Q 026841 82 AVETQSTP--S-FTIGKKFQL--------DDVIES-QQFDRDILNAIFEDDI------KD----YLTSQGVEWEESADLM 139 (232)
Q Consensus 82 ~~~~~~~~--~-~~~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~e----~l~~~G~~v~~~~D~~ 139 (232)
.++|.+.. + =..|.|+.| +|++.+ +.||++ +++++|+++ .+ ++++.|+++++++|++
T Consensus 138 l~TI~E~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~-v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ 216 (355)
T 4a8p_A 138 LCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMN-FVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS 216 (355)
T ss_dssp HHHHHHTCCTTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCE-EEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG
T ss_pred HHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCE-EEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH
Confidence 35677766 5 467899887 466654 789998 999999655 22 3456799999999999
Q ss_pred HhhCcCCEEEEccccccccCCCh-hHHHHhhcC-CccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHh
Q 026841 140 EVASKCDVVYQTRIQRERFGERT-DLYEEARGK-YIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAK 215 (232)
Q Consensus 140 EAl~~ADVVYtdrwqsEr~~~~~-~e~~~~~~~-YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAe 215 (232)
|+++||||||++|.+++++++. +++.+++.+ ||||.++|+.+++|++|||||| ||+||++||+++|+|+||+||+
T Consensus 217 -av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~p~S~if~Qae 295 (355)
T 4a8p_A 217 -SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAE 295 (355)
T ss_dssp -GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHH
T ss_pred -HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHHHhCCCcchHHHHHh
Confidence 9999999999999998776554 566677777 9999999999999999999999 9999999999999999999999
Q ss_pred hcHHHHHHHHHHHhcC
Q 026841 216 NGLYIRMALLKLLLVG 231 (232)
Q Consensus 216 NrL~vrmALL~~lLg~ 231 (232)
||+|+|||||.+++++
T Consensus 296 Nrl~~r~AlL~~ll~~ 311 (355)
T 4a8p_A 296 NRLTSIRGLLVYLMND 311 (355)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999999873
No 23
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=100.00 E-value=3.8e-33 Score=257.94 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=109.9
Q ss_pred HHHhhccCcccccccChH-HH------H----HHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCCh---hHHHH
Q 026841 102 VIESQQFDRDILNAIFED-DI------K----DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERT---DLYEE 167 (232)
Q Consensus 102 li~A~~~~~~~L~va~P~-~i------~----e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~---~e~~~ 167 (232)
+..+..||++ +++++|+ ++ . +.+.+.|.++++++|++||+++||||||||||+||+.+.. ....+
T Consensus 213 ~~~~~~~g~~-v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDvvyt~r~q~~r~~~~~~~~~~~~~ 291 (359)
T 3kzn_A 213 LTIATRMGMD-VTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRD 291 (359)
T ss_dssp HHHHHHTTCE-EEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTCSEEEEECCCCGGGTTCCTTHHHHHG
T ss_pred HHHHHhcccc-EEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCCeEEEEEEEEEeecccchhhhHHHHH
Confidence 3456789998 9999994 22 2 3456789999999999999999999999999999986443 22457
Q ss_pred hhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 168 ARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 168 ~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
++.+|+||+++|+. ++|++|||||| ||+||+++|+|+|+|+||+||+||+|+|||||.++||+
T Consensus 292 ~~~~y~v~~~l~~~-~~~ai~MHplP~~Rg~EI~~eV~d~p~S~if~QaeNgl~vrmAlL~~llG~ 356 (359)
T 3kzn_A 292 QYQHFIVDERKMAL-TNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVGQ 356 (359)
T ss_dssp GGGGGSBCHHHHHT-SSSCEEECCSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhccChHHHHhcC-CCCCEEECCCCCCCCCCcCHHHHCCCcchHHHHHHhhHHHHHHHHHHHhCC
Confidence 88899999999985 46999999999 99999999999999999999999999999999999985
No 24
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=100.00 E-value=2.6e-34 Score=261.52 Aligned_cols=144 Identities=24% Similarity=0.288 Sum_probs=120.9
Q ss_pred ceeccCCCccccCccchh----------hhHHH-hhccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEE
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIE-SQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQ 150 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~-A~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYt 150 (232)
.++|.+..+=..|.|+.| +|++. ++.||++ +++++|+++.-...+.| .++|++||+++||||||
T Consensus 135 l~Ti~e~~g~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~g----~~~d~~eav~~aDvvyt 209 (304)
T 3r7f_A 135 LMTIYEEFNTFKGLTVSIHGDIKHSRVARSNAEVLTRLGAR-VLFSGPSEWQDEENTFG----TYVSMDEAVESSDVVML 209 (304)
T ss_dssp HHHHHHHHSCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCE-EEEESCGGGSCTTCSSC----EECCHHHHHHHCSEEEE
T ss_pred HHHHHHHhCCCCCCEEEEEcCCCCcchHHHHHHHHHHcCCE-EEEECCCccCcchhhcC----ccCCHHHHhCCCCEEEe
Confidence 356777666667888877 45554 4679998 99999998853111233 56899999999999999
Q ss_pred ccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHHHH
Q 026841 151 TRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228 (232)
Q Consensus 151 drwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~l 228 (232)
||||+||+.+.. ++++++.+||||.++|+.+++|++|||||| ||+||+++|+++|+|+||+|||||+|+|||||.++
T Consensus 210 ~~~q~er~~~~~-~~~~~~~~y~v~~~~l~~a~~~ai~mHclP~~Rg~EI~~eV~d~p~S~vf~QaeNrl~~r~AlL~~l 288 (304)
T 3r7f_A 210 LRIQNERHQSAV-SQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQRA 288 (304)
T ss_dssp CCCCTTTCCSSC-CSTTHHHHHSBCHHHHTTSCTTCEEECCSCCCBTTTBCGGGTTSTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhccccch-hHHHHhCCCccCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCCchhHHHHHhccHHHHHHHHHHH
Confidence 999999985432 344668899999999999999999999999 99999999999999999999999999999999999
Q ss_pred hcC
Q 026841 229 LVG 231 (232)
Q Consensus 229 Lg~ 231 (232)
+++
T Consensus 289 l~~ 291 (304)
T 3r7f_A 289 LQT 291 (304)
T ss_dssp HCC
T ss_pred hcC
Confidence 963
No 25
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=100.00 E-value=2.8e-33 Score=259.21 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=113.2
Q ss_pred cCccchh--------hhHHHh-hccCcccccccChHHH------HHHHH------hCCCEEEEEcCHHHhhCcCCEEEEc
Q 026841 93 IGKKFQL--------DDVIES-QQFDRDILNAIFEDDI------KDYLT------SQGVEWEESADLMEVASKCDVVYQT 151 (232)
Q Consensus 93 ~~~k~~l--------~~li~A-~~~~~~~L~va~P~~i------~e~l~------~~G~~v~~~~D~~EAl~~ADVVYtd 151 (232)
.|.|+.| +|++.+ +.||++ +++++|+++ .+.++ +.|+.+++++|++||+++|||||||
T Consensus 187 ~glkva~vGD~~nva~Sl~~~l~~lG~~-v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd 265 (353)
T 3sds_A 187 EGLKIAWVGDANNVLFDLAIAATKMGVN-VAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTD 265 (353)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTCE-EEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEEC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeC
Confidence 7888887 566655 689998 999999665 23333 4588999999999999999999999
Q ss_pred cccccccCCChhHHHHhhcCCccCHHHHHh--cCCCcEEeCCCCCC-ccccccccCCCCchHHHHHhhcHHHHHHHHHHH
Q 026841 152 RIQRERFGERTDLYEEARGKYIVDQNVLRV--MQKHAVVLHPLPRL-DEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228 (232)
Q Consensus 152 rwqsEr~~~~~~e~~~~~~~YqVt~elL~~--Ak~dai~MHcLPRg-~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~l 228 (232)
+|.+++++.+.+++.+++.+||||.++|+. +++|++|||||||. +||++||+++|+|+||+|||||+|+|||||.++
T Consensus 266 ~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcLP~~~~EI~~eV~d~p~S~if~QaeNrl~~rmAlL~~~ 345 (353)
T 3sds_A 266 TWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCLPRHPEEVSDEVFYSERSLVFPEAENRLWAAISALEAF 345 (353)
T ss_dssp CC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECSCCCTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCCCCCCCeECHHHhCCCcchHHHHHhhcHHHHHHHHHHH
Confidence 999887655445666788899999999999 89999999999964 899999999999999999999999999999998
Q ss_pred hc
Q 026841 229 LV 230 (232)
Q Consensus 229 Lg 230 (232)
+.
T Consensus 346 l~ 347 (353)
T 3sds_A 346 VV 347 (353)
T ss_dssp TT
T ss_pred HH
Confidence 84
No 26
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=99.97 E-value=2.9e-33 Score=262.63 Aligned_cols=146 Identities=17% Similarity=0.234 Sum_probs=118.9
Q ss_pred eeccCCCc-c--ccCccchh---------------hhHHH-hhccCcccccccChHHH------H----HHHHhCCCEEE
Q 026841 83 VETQSTPS-F--TIGKKFQL---------------DDVIE-SQQFDRDILNAIFEDDI------K----DYLTSQGVEWE 133 (232)
Q Consensus 83 ~~~~~~~~-~--~~~~k~~l---------------~~li~-A~~~~~~~L~va~P~~i------~----e~l~~~G~~v~ 133 (232)
++|.+..+ | ..|+|+.+ +|++. ++.||++ +++++|+++ . +++++.|++++
T Consensus 177 ~TI~E~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~-v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~ 255 (399)
T 3q98_A 177 AWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMD-VTLAHPEGYDLIPDVVEVAKNNAKASGGSFR 255 (399)
T ss_dssp HHHHHHHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCE-EEEECCTTCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCE-EEEECCcccCCCHHHHHHHHHHHHHcCCEEE
Confidence 45665544 2 35667653 56665 4789998 999999754 2 34457899999
Q ss_pred EEcCHHHhhCcCCEEEEccccccccCCC-------------------hhHHHHhhcCCccCHHHHHhcC-CCcEEeCCCC
Q 026841 134 ESADLMEVASKCDVVYQTRIQRERFGER-------------------TDLYEEARGKYIVDQNVLRVMQ-KHAVVLHPLP 193 (232)
Q Consensus 134 ~~~D~~EAl~~ADVVYtdrwqsEr~~~~-------------------~~e~~~~~~~YqVt~elL~~Ak-~dai~MHcLP 193 (232)
+++|++||+++|||||||+|.+||...+ ..++.+++.+||||.++|+.++ +|++||||||
T Consensus 256 ~~~d~~eav~~aDvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~~a~~~daifMHcLP 335 (399)
T 3q98_A 256 QVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHCLP 335 (399)
T ss_dssp EESCHHHHHTTCSEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCCBCHHHHHTSGGGCCEECCCSS
T ss_pred EEcCHHHHhCCCCEEEecCccccchhhhhhhhccccchhhhhhhhhhhhHHHHHccCcEECHHHHhhcCCCCcEEECCCC
Confidence 9999999999999999999998774211 0123468899999999999997 5999999999
Q ss_pred --------CCccccccccCCCCchHHHHHhhcHHHHHHHHHHHh
Q 026841 194 --------RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229 (232)
Q Consensus 194 --------Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~lL 229 (232)
||+||++||+++|+|+||+|||||+|+|||||.++.
T Consensus 336 a~~~~~~~rg~EVt~eV~d~p~S~vf~QAeNrl~vrmAll~~~~ 379 (399)
T 3q98_A 336 ADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRK 379 (399)
T ss_dssp CCEETTTBSSCSEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCEeChhhhCCccccHHHHHhccHHHHHHHHHHhh
Confidence 389999999999999999999999999999998875
No 27
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=99.97 E-value=1.2e-31 Score=245.90 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=106.5
Q ss_pred hhHHHh-hccCcccccccChHHHH--HHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCH
Q 026841 100 DDVIES-QQFDRDILNAIFEDDIK--DYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQ 176 (232)
Q Consensus 100 ~~li~A-~~~~~~~L~va~P~~i~--e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~ 176 (232)
+|++.+ +.||++ +++++|+++. +... .++++++|++||+++|||||||+||+++++...+.+.+ ..+|+||.
T Consensus 186 ~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~---~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r-~~~y~vt~ 260 (324)
T 1js1_X 186 NSFAEWMNATDYE-FVITHPEGYELDPKFV---GNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILST-DRNWTVGD 260 (324)
T ss_dssp HHHHHHHHTSSSE-EEEECCTTCCCCHHHH---TTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCC-CTTSSBCH
T ss_pred HHHHHHHHHCCCE-EEEeCCcccCCChhhc---cceEEECCHHHHhCCCCEEEecCcccCCCccccchHHH-hcCcccCH
Confidence 677666 589998 9999998883 2222 35678999999999999999999999876430011112 37899999
Q ss_pred HHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHHHHhcC
Q 026841 177 NVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231 (232)
Q Consensus 177 elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~lLg~ 231 (232)
++|+.++ |++|||||| ||+||+++|+++|+|+||+||+||+|+|||||.+++++
T Consensus 261 e~l~~a~-~ai~MHcLP~~Rg~EI~~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~ 316 (324)
T 1js1_X 261 RQMAVTN-NAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLEN 316 (324)
T ss_dssp HHHTTSS-SCEEECCSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CcEEECCCCCCCCcccCHHHhCCCcchHHHHHhhCHHHHHHHHHHHHhc
Confidence 9999999 999999999 89999999999999999999999999999999999975
No 28
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=99.97 E-value=1.1e-31 Score=253.38 Aligned_cols=146 Identities=15% Similarity=0.228 Sum_probs=117.9
Q ss_pred eeccCCCc-c--ccCccch--h-------------hhHHHh-hccCcccccccChHHH------H----HHHHhCCCEEE
Q 026841 83 VETQSTPS-F--TIGKKFQ--L-------------DDVIES-QQFDRDILNAIFEDDI------K----DYLTSQGVEWE 133 (232)
Q Consensus 83 ~~~~~~~~-~--~~~~k~~--l-------------~~li~A-~~~~~~~L~va~P~~i------~----e~l~~~G~~v~ 133 (232)
++|.+..+ | ..|.|+. + +|++.+ +.||++ +++++|+++ . +++++.|++++
T Consensus 174 ~TI~E~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~-v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~ 252 (418)
T 2yfk_A 174 LHLIHEFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMD-VVLAHPEGYEIMPEVEEVAKKNAAEFGGNFT 252 (418)
T ss_dssp HHHHHHTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCE-EEEECCTTCCCCHHHHHHHHHHHHHHSSEEE
T ss_pred HHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCE-EEEECCccccCCHHHHHHHHHHHHHcCCEEE
Confidence 45555444 2 4577776 3 466655 689998 999999755 2 23456899999
Q ss_pred EEcCHHHhhCcCCEEEEcccccccc----------CCCh---------hHHHHhhcCCccCHHHHHhcCC-CcEEeCCCC
Q 026841 134 ESADLMEVASKCDVVYQTRIQRERF----------GERT---------DLYEEARGKYIVDQNVLRVMQK-HAVVLHPLP 193 (232)
Q Consensus 134 ~~~D~~EAl~~ADVVYtdrwqsEr~----------~~~~---------~e~~~~~~~YqVt~elL~~Ak~-dai~MHcLP 193 (232)
+++|++||+++|||||||+|.+||. ++.. .+..+++.+||||.++|+.+++ |++||||||
T Consensus 253 ~~~d~~eav~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcLP 332 (418)
T 2yfk_A 253 KTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCLP 332 (418)
T ss_dssp EESCHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCSC
T ss_pred EEcCHHHHhcCCCEEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCCC
Confidence 9999999999999999999987653 1100 1224678999999999999986 999999999
Q ss_pred C--------CccccccccCCCCchHHHHHhhcHHHHHHHHHHHh
Q 026841 194 R--------LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229 (232)
Q Consensus 194 R--------g~EIs~eV~dsp~S~if~QAeNrL~vrmALL~~lL 229 (232)
+ |+||+++|+++|+|+||+||+||+|+|||||.++.
T Consensus 333 a~r~~~~~rg~EIt~eV~d~p~S~vf~QAeNrl~~r~AlL~~~~ 376 (418)
T 2yfk_A 333 ADITGVSCEEGEVEASVFDRYRVELYKEASYKPYVIAAMIFLSK 376 (418)
T ss_dssp CCEETTTBSSCSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCCCEEChHHhCCCcchHHhHHhcCHHHHHHHHHHhh
Confidence 4 88999999999999999999999999999999875
No 29
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=99.97 E-value=1.8e-31 Score=241.54 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=116.9
Q ss_pred ceeccCCCccccCccchh----------hhHHHh-hccCcccccccChHHHH-HHHHhCCCEEEEEcCHHHhhCcCCEEE
Q 026841 82 AVETQSTPSFTIGKKFQL----------DDVIES-QQFDRDILNAIFEDDIK-DYLTSQGVEWEESADLMEVASKCDVVY 149 (232)
Q Consensus 82 ~~~~~~~~~~~~~~k~~l----------~~li~A-~~~~~~~L~va~P~~i~-e~l~~~G~~v~~~~D~~EAl~~ADVVY 149 (232)
.++|.+..+=..|.|+.| +|++.+ +.||++ +++++|+++. +.+.+.| +++++|++||+++|||||
T Consensus 134 l~Ti~e~~g~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~-v~~~~P~~~~p~~~~~~g--~~~~~d~~eav~~aDvvy 210 (291)
T 3d6n_B 134 FFTIKEHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAK-IGVCGPKTLIPRDVEVFK--VDVFDDVDKGIDWADVVI 210 (291)
T ss_dssp HHHHHHHHSCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCE-EEEESCGGGSCTTGGGGC--EEEESSHHHHHHHCSEEE
T ss_pred HHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHHCCCE-EEEECCchhCCchHHHCC--CEEEcCHHHHhCCCCEEE
Confidence 356666655567888887 455555 689998 9999999883 2234556 678999999999999999
Q ss_pred Ecccccccc-CCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC--CCccccccccCCCCchHHHHHhhcHHHHHHHHH
Q 026841 150 QTRIQRERF-GERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLK 226 (232)
Q Consensus 150 tdrwqsEr~-~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP--Rg~EIs~eV~dsp~S~if~QAeNrL~vrmALL~ 226 (232)
|+++|.||+ +....++++++.+|+||.++|+.++ +|||||| ||+||+++|+++|+|+||+||+||+|+|||||.
T Consensus 211 ~~~~q~er~~~~~~~~~~~~~~~y~v~~~~l~~a~---i~mH~lP~~Rg~EI~~eV~d~p~s~if~QaeN~l~~r~AlL~ 287 (291)
T 3d6n_B 211 WLRLQKERQKENYIPSESSYFKQFGLTKERFEKVK---LYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYK 287 (291)
T ss_dssp ECCCCTHHHHTTSSSCHHHHHHHHSBCHHHHTTCC---CEECSSCCCBTTTBCGGGSSSTTBCHHHHHHHHHHHHHHHHH
T ss_pred EeCcccCccccccchhHHHHHhhcCcCHHHHHhcc---cccCCCCCCCCceECHHHhCCcccHHHHHHHhhHHHHHHHHH
Confidence 955565553 2223456678889999999999886 9999999 899999999999999999999999999999999
Q ss_pred HHhc
Q 026841 227 LLLV 230 (232)
Q Consensus 227 ~lLg 230 (232)
++++
T Consensus 288 ~~l~ 291 (291)
T 3d6n_B 288 FLWT 291 (291)
T ss_dssp HHCC
T ss_pred HHhC
Confidence 9875
No 30
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=91.60 E-value=0.45 Score=45.03 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=38.1
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCcccccc
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVD 201 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~e 201 (232)
.+++|+++++|||++.. .....|+.+.++.+|++++|++..+-+.||+.+
T Consensus 258 ~sL~eal~~ADVVilt~----------------gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~ 307 (436)
T 3h9u_A 258 LLVEDVVEEAHIFVTTT----------------GNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVA 307 (436)
T ss_dssp CCHHHHTTTCSEEEECS----------------SCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHH
T ss_pred cCHHHHHhhCCEEEECC----------------CCcCccCHHHHhhcCCCcEEEEeCCCCCccCHH
Confidence 37889999999999633 123457888899999999999998655566543
No 31
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=86.94 E-value=1.1 Score=42.72 Aligned_cols=73 Identities=21% Similarity=0.113 Sum_probs=49.3
Q ss_pred hccCcccccccChHHHHH-HHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCC
Q 026841 106 QQFDRDILNAIFEDDIKD-YLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQK 184 (232)
Q Consensus 106 ~~~~~~~L~va~P~~i~e-~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~ 184 (232)
+.||.. +.+.=|..... .+...|..+ .+++++++++|+|++.. .....|+.+.++.+|+
T Consensus 277 ~~~G~~-Viv~d~~~~~~~~a~~~g~~~---~~l~ell~~aDiVi~~~----------------~t~~lI~~~~l~~MK~ 336 (479)
T 1v8b_A 277 KGLGAR-VYITEIDPICAIQAVMEGFNV---VTLDEIVDKGDFFITCT----------------GNVDVIKLEHLLKMKN 336 (479)
T ss_dssp HHHTCE-EEEECSCHHHHHHHHTTTCEE---CCHHHHTTTCSEEEECC----------------SSSSSBCHHHHTTCCT
T ss_pred HhCcCE-EEEEeCChhhHHHHHHcCCEe---cCHHHHHhcCCEEEECC----------------ChhhhcCHHHHhhcCC
Confidence 445654 44443433221 233556653 58999999999999984 1235688899999999
Q ss_pred CcEEeCCCCCCccc
Q 026841 185 HAVVLHPLPRLDEI 198 (232)
Q Consensus 185 dai~MHcLPRg~EI 198 (232)
+++++++...+.||
T Consensus 337 gailiNvgrg~~EI 350 (479)
T 1v8b_A 337 NAVVGNIGHFDDEI 350 (479)
T ss_dssp TCEEEECSSTTTSB
T ss_pred CcEEEEeCCCCccc
Confidence 99999998755553
No 32
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=86.19 E-value=1.9 Score=41.29 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=48.8
Q ss_pred hhccCcccccccChHHHHH-HHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcC
Q 026841 105 SQQFDRDILNAIFEDDIKD-YLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQ 183 (232)
Q Consensus 105 A~~~~~~~L~va~P~~i~e-~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak 183 (232)
++.||.. +.+.=+..... .+...|..+ .+++|+++++|+|++.+ + ....|+.+.++.+|
T Consensus 296 l~~~G~~-V~v~d~~~~~~~~a~~~G~~~---~~l~ell~~aDiVi~~~------~----------t~~lI~~~~l~~MK 355 (494)
T 3d64_A 296 LRGLGAT-VWVTEIDPICALQAAMEGYRV---VTMEYAADKADIFVTAT------G----------NYHVINHDHMKAMR 355 (494)
T ss_dssp HHTTTCE-EEEECSCHHHHHHHHTTTCEE---CCHHHHTTTCSEEEECS------S----------SSCSBCHHHHHHCC
T ss_pred HHHCCCE-EEEEeCChHhHHHHHHcCCEe---CCHHHHHhcCCEEEECC------C----------cccccCHHHHhhCC
Confidence 3445654 44443332221 223456653 47999999999999986 1 13458899999999
Q ss_pred CCcEEeCCCCCCcc
Q 026841 184 KHAVVLHPLPRLDE 197 (232)
Q Consensus 184 ~dai~MHcLPRg~E 197 (232)
+++++..+...+.|
T Consensus 356 ~gAilINvgrg~ve 369 (494)
T 3d64_A 356 HNAIVCNIGHFDSE 369 (494)
T ss_dssp TTEEEEECSSSSCS
T ss_pred CCcEEEEcCCCcch
Confidence 99999998875555
No 33
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=84.63 E-value=1.5 Score=40.27 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=43.2
Q ss_pred cCCCccccCccchhhhHHHhhccC-cccccccChHHHHHHHH----------------hCCCEEEEEcCHHHhhCcCCEE
Q 026841 86 QSTPSFTIGKKFQLDDVIESQQFD-RDILNAIFEDDIKDYLT----------------SQGVEWEESADLMEVASKCDVV 148 (232)
Q Consensus 86 ~~~~~~~~~~k~~l~~li~A~~~~-~~~L~va~P~~i~e~l~----------------~~G~~v~~~~D~~EAl~~ADVV 148 (232)
++-|+|++=..|.+.++++|..-| ++.+.=.+-+.+.+.++ ..|++ +++|-.||++++|++
T Consensus 68 ~~~~~~~v~d~fd~~~v~~ah~~g~pe~~mp~ir~~v~~~a~~~pkppk~~ih~~~vEdaGVk--VtsDD~EAvk~AEi~ 145 (358)
T 2b0j_A 68 AEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLK--VTSDDREAVEGADIV 145 (358)
T ss_dssp GSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCE--EESCHHHHHTTCSEE
T ss_pred cCCCCceeecccCHHHHHHHHhcCChHHhhHHHHHHHHHHHhhCCCCCccceeeccHHHcCcE--eecchHHHhcCCCEE
Confidence 456888888999999999998763 33221111122222222 34666 678888999999999
Q ss_pred EEcc
Q 026841 149 YQTR 152 (232)
Q Consensus 149 Ytdr 152 (232)
++=+
T Consensus 146 Ilft 149 (358)
T 2b0j_A 146 ITWL 149 (358)
T ss_dssp EECC
T ss_pred EEec
Confidence 8755
No 34
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=75.39 E-value=17 Score=34.74 Aligned_cols=52 Identities=25% Similarity=0.216 Sum_probs=37.5
Q ss_pred CHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCccccccccC
Q 026841 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVDA 204 (232)
Q Consensus 137 D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~d 204 (232)
+++|+++++|||.+.. + ....|+.+.++.+|+++++.-..--+.||+.+-+.
T Consensus 295 ~LeElL~~ADIVv~at----g------------t~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~ 346 (464)
T 3n58_A 295 TLDDAASTADIVVTTT----G------------NKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR 346 (464)
T ss_dssp CHHHHGGGCSEEEECC----S------------SSSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGT
T ss_pred cHHHHHhhCCEEEECC----C------------CccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHH
Confidence 5788999999998743 1 23568999999999999997665434566654443
No 35
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=71.66 E-value=11 Score=31.62 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=50.9
Q ss_pred cccCccchhhhHHHhhcc---CcccccccC--hH--HHHHHHHhCCCEEEEEc-----C-------HHHhhC--cCCEEE
Q 026841 91 FTIGKKFQLDDVIESQQF---DRDILNAIF--ED--DIKDYLTSQGVEWEESA-----D-------LMEVAS--KCDVVY 149 (232)
Q Consensus 91 ~~~~~k~~l~~li~A~~~---~~~~L~va~--P~--~i~e~l~~~G~~v~~~~-----D-------~~EAl~--~ADVVY 149 (232)
|.-|..-.|..|+.+.+- +.+ +..++ |+ ..++++++.|+.+...+ + +.+.++ +.|+|+
T Consensus 6 l~SG~Gs~L~aLi~~~~~~~~~~~-I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 84 (209)
T 1meo_A 6 LISGTGSNLQALIDSTREPNSSAQ-IDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVC 84 (209)
T ss_dssp EESSSCTTHHHHHHHHHSTTCSCE-EEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEECCchHHHHHHHHHhcCCCCcE-EEEEEeCCCChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEE
Confidence 334777778888877433 333 32222 22 23577889999875321 1 123333 478887
Q ss_pred EccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 150 QTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 150 tdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.-.|- ..|.+++++..+..++-+||-
T Consensus 85 ~a~y~-----------------~il~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 85 LAGFM-----------------RILSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp EESCC-----------------SCCCHHHHHHTTTSEEEEESS
T ss_pred Ecchh-----------------hhCCHHHHhhhcCCEEEEccC
Confidence 76642 357788887777778888884
No 36
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=68.09 E-value=30 Score=32.62 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=36.1
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCCCCcccccccc
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLPRLDEITVDVD 203 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLPRg~EIs~eV~ 203 (232)
.+++++++++|||++. . + ..-.|+.+.++.++++++|.-..=-+.||+.+..
T Consensus 267 ~~Leeal~~ADIVi~a---t-g------------t~~lI~~e~l~~MK~gailINvgrg~~EId~~~L 318 (435)
T 3gvp_A 267 VKLNEVIRQVDIVITC---T-G------------NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASL 318 (435)
T ss_dssp CCHHHHTTTCSEEEEC---S-S------------CSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGG
T ss_pred ccHHHHHhcCCEEEEC---C-C------------CcccCCHHHHHhcCCCcEEEEecCCCccCCHHHH
Confidence 3678899999999993 1 1 1346898899999999888766433345554433
No 37
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=65.94 E-value=8.3 Score=34.50 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=51.8
Q ss_pred cCccchhhhHHHhhccC---cccccccCh--HHHHHHHHhCCCEEEEEc----C-------HHHhhC--cCCEEEEcccc
Q 026841 93 IGKKFQLDDVIESQQFD---RDILNAIFE--DDIKDYLTSQGVEWEESA----D-------LMEVAS--KCDVVYQTRIQ 154 (232)
Q Consensus 93 ~~~k~~l~~li~A~~~~---~~~L~va~P--~~i~e~l~~~G~~v~~~~----D-------~~EAl~--~ADVVYtdrwq 154 (232)
-|..=-|.+|+.+.+-| .+ +..++. +++.+.+++.|+.+.... + +.+.++ ++|+|+.-+|-
T Consensus 113 Sg~g~nl~~ll~~~~~g~l~~~-I~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 113 SRESHCLADLLHRWHSDELDCD-IACVISNHQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp CSCCHHHHHHHHHHHTTCSCSE-EEEEEESSSTTHHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred eCCchhHHHHHHHHHCCCCCcE-EEEEEECcHHHHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 35555678888886544 33 332232 567778888998875541 0 123333 47888776652
Q ss_pred ccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC--CC
Q 026841 155 RERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP--LP 193 (232)
Q Consensus 155 sEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc--LP 193 (232)
..+.+++++..+..++=+|| ||
T Consensus 192 -----------------~IL~~~~l~~~~~~~INiHpSlLP 215 (302)
T 3o1l_A 192 -----------------QILPPQLCREYAHQVINIHHSFLP 215 (302)
T ss_dssp -----------------SCCCTTHHHHTTTCEEEEESSCTT
T ss_pred -----------------hhcCHHHHhhhhCCeEEeCccccc
Confidence 35677777777777888888 57
No 38
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=65.89 E-value=11 Score=34.87 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=31.9
Q ss_pred CHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 137 D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
+++++++++|||++..-.. +. ..+..|++++++.++++.++.=.
T Consensus 258 ~l~e~l~~aDIVI~tv~iP-g~----------~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVP-GR----------PAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHTTCSEEEECCCCT-TS----------CCCCCBCHHHHHTSCTTCEEEET
T ss_pred HHHHHHhcCCEEEECCCCC-Cc----------ccceeecHHHHhcCCCCcEEEEE
Confidence 5678999999999865221 10 13567899999999998777544
No 39
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=65.88 E-value=12 Score=33.11 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=53.5
Q ss_pred cccCccchhhhHHHhhccC---cccccccC--hHHHHHHHHhCCCEEEEEcC-----------HHHhhC--cCCEEEEcc
Q 026841 91 FTIGKKFQLDDVIESQQFD---RDILNAIF--EDDIKDYLTSQGVEWEESAD-----------LMEVAS--KCDVVYQTR 152 (232)
Q Consensus 91 ~~~~~k~~l~~li~A~~~~---~~~L~va~--P~~i~e~l~~~G~~v~~~~D-----------~~EAl~--~ADVVYtdr 152 (232)
|--|..=-|.+|+.+.+-| .+ +..++ .++..+.+++.|+.+..... +.+.++ ++|+|+.-+
T Consensus 96 l~Sg~g~~l~~ll~~~~~g~l~~~-i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~ 174 (286)
T 3n0v_A 96 MVSKADHCLNDLLYRQRIGQLGMD-VVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILAR 174 (286)
T ss_dssp EESSCCHHHHHHHHHHHTTSSCCE-EEEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESS
T ss_pred EEeCCCCCHHHHHHHHHCCCCCcE-EEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecc
Confidence 3345566778888886544 33 23222 25666778889988754321 123333 478877766
Q ss_pred ccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC--CC
Q 026841 153 IQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP--LP 193 (232)
Q Consensus 153 wqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc--LP 193 (232)
|- ..+.+++++..+..++=+|| ||
T Consensus 175 y~-----------------~il~~~~l~~~~~~~iNiHpSlLP 200 (286)
T 3n0v_A 175 YM-----------------QVLSPELCRRLDGWAINIHHSLLP 200 (286)
T ss_dssp CC-----------------SCCCHHHHHHTTTSEEEEEECSST
T ss_pred cc-----------------cccCHHHHhhhcCCeEEecccccc
Confidence 42 35788888877778888898 57
No 40
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=64.32 E-value=16 Score=30.91 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=52.1
Q ss_pred cccCccchhhhHHHhhcc--CcccccccC-hHHH--HHHHHhCCCEEEEEc------------CHHHhhC--cCCEEEEc
Q 026841 91 FTIGKKFQLDDVIESQQF--DRDILNAIF-EDDI--KDYLTSQGVEWEESA------------DLMEVAS--KCDVVYQT 151 (232)
Q Consensus 91 ~~~~~k~~l~~li~A~~~--~~~~L~va~-P~~i--~e~l~~~G~~v~~~~------------D~~EAl~--~ADVVYtd 151 (232)
|--|..=-|..|+.|..- +.+-.-|+. +++. ++.+++.|+.+...+ ++.+.++ +.|+|+.-
T Consensus 11 l~SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~a 90 (215)
T 3tqr_A 11 LISGNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLA 90 (215)
T ss_dssp EESSCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred EEeCCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEc
Confidence 334666677788888653 344222333 2222 467889999875531 1123343 47888877
Q ss_pred cccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 152 RIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 152 rwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.|. ..+.+++++..+..++-+||-
T Consensus 91 gy~-----------------~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 91 GFM-----------------RKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp SCC-----------------SCCCHHHHHHTTTSEEEEESS
T ss_pred cch-----------------hhCCHHHHhhccCCeEEeCcc
Confidence 652 357778887777778888984
No 41
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=64.16 E-value=11 Score=35.01 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=32.8
Q ss_pred CHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 137 D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
++.++++++|||++..-...+ ..+..|++++++.+|++.++.=.-
T Consensus 268 ~l~e~l~~aDVVI~tvlipg~-----------~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 268 LVAEHIAKQDIVITTALIPGR-----------PAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHTCSEEEECCCCSSS-----------CCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHHhcCCCEEEECCcCCCC-----------CCCEEecHHHHhcCCCCCEEEEEe
Confidence 567889999999987532211 135678999999999988876543
No 42
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=63.25 E-value=17 Score=32.79 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=43.3
Q ss_pred hhccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCC
Q 026841 105 SQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQK 184 (232)
Q Consensus 105 A~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~ 184 (232)
++.||++ +.+.=+..-.+.+...|+. ..++++|+++++|+|..-.-.... ....++.+.++.+|+
T Consensus 179 l~~~G~~-V~~~d~~~~~~~~~~~g~~--~~~~l~ell~~aDiV~l~~Plt~~------------t~~li~~~~l~~mk~ 243 (352)
T 3gg9_A 179 GRAFGMN-VLVWGRENSKERARADGFA--VAESKDALFEQSDVLSVHLRLNDE------------TRSIITVADLTRMKP 243 (352)
T ss_dssp HHHTTCE-EEEECSHHHHHHHHHTTCE--ECSSHHHHHHHCSEEEECCCCSTT------------TTTCBCHHHHTTSCT
T ss_pred HHhCCCE-EEEECCCCCHHHHHhcCce--EeCCHHHHHhhCCEEEEeccCcHH------------HHHhhCHHHHhhCCC
Confidence 3456765 5544444333445567875 457999999999999876532210 112345666666666
Q ss_pred CcEEeCCC
Q 026841 185 HAVVLHPL 192 (232)
Q Consensus 185 dai~MHcL 192 (232)
++++.-+.
T Consensus 244 gailIN~a 251 (352)
T 3gg9_A 244 TALFVNTS 251 (352)
T ss_dssp TCEEEECS
T ss_pred CcEEEECC
Confidence 66665543
No 43
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=62.48 E-value=12 Score=33.14 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=52.8
Q ss_pred cccCccchhhhHHHhhccC---cccccccCh--HHHHHHHHhCCCEEEEEc----C-------HHHhhC--cCCEEEEcc
Q 026841 91 FTIGKKFQLDDVIESQQFD---RDILNAIFE--DDIKDYLTSQGVEWEESA----D-------LMEVAS--KCDVVYQTR 152 (232)
Q Consensus 91 ~~~~~k~~l~~li~A~~~~---~~~L~va~P--~~i~e~l~~~G~~v~~~~----D-------~~EAl~--~ADVVYtdr 152 (232)
|--|..=-|.+|+.+.+-| .+ +..++. ++..+.+++.|+.+.... + +.+.++ ++|+|+.-+
T Consensus 101 l~Sg~g~~l~~ll~~~~~g~l~~~-i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~ 179 (292)
T 3lou_A 101 MVSKLEHCLADLLFRWKMGELKMD-IVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILAR 179 (292)
T ss_dssp EECSCCHHHHHHHHHHHHTSSCCE-EEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESS
T ss_pred EEcCCCcCHHHHHHHHHcCCCCcE-EEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecC
Confidence 3345566778888875544 33 332222 556677889999875432 1 113333 478887766
Q ss_pred ccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC--CC
Q 026841 153 IQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP--LP 193 (232)
Q Consensus 153 wqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc--LP 193 (232)
|- ..+.+++++..+..++=+|| ||
T Consensus 180 y~-----------------~il~~~~l~~~~~~~iNiHpSlLP 205 (292)
T 3lou_A 180 YM-----------------QVLSPEASARLANRAINIHHSFLP 205 (292)
T ss_dssp CC-----------------SCCCHHHHHHTTTSEEEEEEECSS
T ss_pred ch-----------------hhCCHHHHhhhcCCeEEeCCCcCc
Confidence 42 35778888877777888888 56
No 44
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=59.74 E-value=27 Score=29.39 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=51.3
Q ss_pred cCccchhhhHHHhhccC---cccccccC-hH--HHHHHHHhCCCEEEEEc-----C-------HHHhhC--cCCEEEEcc
Q 026841 93 IGKKFQLDDVIESQQFD---RDILNAIF-ED--DIKDYLTSQGVEWEESA-----D-------LMEVAS--KCDVVYQTR 152 (232)
Q Consensus 93 ~~~k~~l~~li~A~~~~---~~~L~va~-P~--~i~e~l~~~G~~v~~~~-----D-------~~EAl~--~ADVVYtdr 152 (232)
-|..=-+..|+.|..-+ .+-.-|+. .+ ..++.+++.|+.+...+ + +.+.++ +.|+++.-.
T Consensus 15 SG~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 15 SGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp SSCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESS
T ss_pred ECCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 36666677788776533 34222333 12 22467889999875432 1 112333 478888776
Q ss_pred ccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC--CC
Q 026841 153 IQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP--LP 193 (232)
Q Consensus 153 wqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc--LP 193 (232)
|. ..+.+++++..+..++-+|| ||
T Consensus 95 y~-----------------~il~~~~l~~~~~~~iNiHpSLLP 120 (209)
T 4ds3_A 95 YM-----------------RLLSGRFIAPYEGRILNIHPSLLP 120 (209)
T ss_dssp CC-----------------SCCCHHHHGGGTTCEEEEESSCTT
T ss_pred cc-----------------cCcCHHHHhhccCCeEEECCcccc
Confidence 52 45788888877778888998 46
No 45
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=57.15 E-value=26 Score=29.62 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=51.2
Q ss_pred cCccchhhhHHHhhccC---cccccccC-hHH--HHHHHHhCCCEEEEEc-------CHHHhhC--cCCEEEEccccccc
Q 026841 93 IGKKFQLDDVIESQQFD---RDILNAIF-EDD--IKDYLTSQGVEWEESA-------DLMEVAS--KCDVVYQTRIQRER 157 (232)
Q Consensus 93 ~~~k~~l~~li~A~~~~---~~~L~va~-P~~--i~e~l~~~G~~v~~~~-------D~~EAl~--~ADVVYtdrwqsEr 157 (232)
-|..=-+..++.|..-+ .+-.-|+. .++ .++++++.|+.+...+ ++.+.++ +.|+|+.-.|-
T Consensus 16 SG~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~--- 92 (215)
T 3kcq_A 16 SGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM--- 92 (215)
T ss_dssp SSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC---
T ss_pred ECCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc---
Confidence 36666677888876543 34222333 122 3578889999875432 1223443 47888877752
Q ss_pred cCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 158 FGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 158 ~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
..+.+++++..+..++=+||-
T Consensus 93 --------------~IL~~~~l~~~~~~~iNiHpS 113 (215)
T 3kcq_A 93 --------------SILPEKFVTDWHHKIINIHPS 113 (215)
T ss_dssp --------------SCCCHHHHHHTTTSEEEEESS
T ss_pred --------------eEeCHHHHhhccCCeEEECcc
Confidence 357778887777778888883
No 46
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=54.10 E-value=28 Score=30.97 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCEEEEEcCH-----HHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 119 DDIKDYLTSQGVEWEESADL-----MEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 119 ~~i~e~l~~~G~~v~~~~D~-----~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
..+++++.++|+.+....++ .+.++ +.|+++.-.| .+.|.+++++..+-.++-+||
T Consensus 48 ~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~il~~~~~g~iNiHp 110 (314)
T 3tqq_A 48 SPVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAY-----------------GLILPKKALNAFRLGCVNVHA 110 (314)
T ss_dssp CHHHHHHHHTTCCEECCSCSSSHHHHHHHHTTCCSEEEEESC-----------------CSCCCHHHHTSSTTCEEEEES
T ss_pred CHHHHHHHHcCCCEECcccCCCHHHHHHHHhcCCCEEEEcCc-----------------ccccCHHHHhhCcCCEEEecC
Confidence 34568888999886443332 23333 4788877664 246778888776667888998
Q ss_pred C
Q 026841 192 L 192 (232)
Q Consensus 192 L 192 (232)
-
T Consensus 111 S 111 (314)
T 3tqq_A 111 S 111 (314)
T ss_dssp S
T ss_pred c
Confidence 3
No 47
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=51.61 E-value=37 Score=28.36 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCEEEEEcC------------HHHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCC
Q 026841 120 DIKDYLTSQGVEWEESAD------------LMEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKH 185 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D------------~~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~d 185 (232)
.+++++++.|+.+...+. +.+.++ +.|+++.-.|- ..|.+++++..+..
T Consensus 44 ~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~-----------------~il~~~~l~~~~~~ 106 (212)
T 3av3_A 44 KVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM-----------------RLIGPTLLSAYEGK 106 (212)
T ss_dssp HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC-----------------SCCCHHHHHHTTTC
T ss_pred HHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh-----------------hhCCHHHHhhhcCC
Confidence 456788899998754221 112332 46887776642 46788888877778
Q ss_pred cEEeCCC
Q 026841 186 AVVLHPL 192 (232)
Q Consensus 186 ai~MHcL 192 (232)
++-+||-
T Consensus 107 ~iNiHpS 113 (212)
T 3av3_A 107 IVNIHPS 113 (212)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 8889984
No 48
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=50.67 E-value=17 Score=27.38 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 119 ~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
+...+++++.|..+...++++++++++|+|+..+
T Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at 88 (144)
T 3oj0_A 55 DHVRAFAEKYEYEYVLINDIDSLIKNNDVIITAT 88 (144)
T ss_dssp HHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECS
T ss_pred HHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeC
Confidence 3444556677888777889999999999999877
No 49
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=50.18 E-value=27 Score=31.84 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=40.2
Q ss_pred hhccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCC
Q 026841 105 SQQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQK 184 (232)
Q Consensus 105 A~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~ 184 (232)
++.||++ +.+.=|..-.+.+...|+. ..+++|.++++|||..-.-.... ....++.+.++.+|+
T Consensus 195 l~~fG~~-V~~~d~~~~~~~~~~~g~~---~~~l~ell~~aDvV~l~~Plt~~------------T~~li~~~~l~~mk~ 258 (365)
T 4hy3_A 195 LSGFRAR-IRVFDPWLPRSMLEENGVE---PASLEDVLTKSDFIFVVAAVTSE------------NKRFLGAEAFSSMRR 258 (365)
T ss_dssp HTTSCCE-EEEECSSSCHHHHHHTTCE---ECCHHHHHHSCSEEEECSCSSCC---------------CCCHHHHHTSCT
T ss_pred hhhCCCE-EEEECCCCCHHHHhhcCee---eCCHHHHHhcCCEEEEcCcCCHH------------HHhhcCHHHHhcCCC
Confidence 3456655 4443332212334566775 35899999999999876532211 112356666666676
Q ss_pred CcEEeCC
Q 026841 185 HAVVLHP 191 (232)
Q Consensus 185 dai~MHc 191 (232)
++++.-+
T Consensus 259 gailIN~ 265 (365)
T 4hy3_A 259 GAAFILL 265 (365)
T ss_dssp TCEEEEC
T ss_pred CcEEEEC
Confidence 6666543
No 50
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=49.73 E-value=13 Score=35.01 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHhCC--CEEEEEcCHHHhhCcCCEEEEc
Q 026841 123 DYLTSQG--VEWEESADLMEVASKCDVVYQT 151 (232)
Q Consensus 123 e~l~~~G--~~v~~~~D~~EAl~~ADVVYtd 151 (232)
+.++..| .+++.+.|.+||++|||+|++.
T Consensus 53 ~~~~~~~~~~~i~~t~d~~eAl~gAD~Vi~~ 83 (477)
T 3u95_A 53 KYVEELNSPVKVVKTESLDEAIEGADFIINT 83 (477)
T ss_dssp HHHHHHTCCCEEEEESCHHHHHTTCSEEEEC
T ss_pred HHHHHcCCCeEEEEeCCHHHHhCCCCEEEEC
Confidence 3344444 5788899999999999999987
No 51
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=48.19 E-value=36 Score=28.92 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=36.8
Q ss_pred HHHHHHhCCCEEEEEc--C----------HHHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCc
Q 026841 121 IKDYLTSQGVEWEESA--D----------LMEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHA 186 (232)
Q Consensus 121 i~e~l~~~G~~v~~~~--D----------~~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~da 186 (232)
.++++++.|+.+...+ + +.+.++ +.|+|+.-.|- ..|.+++++..+..+
T Consensus 64 ~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~-----------------~IL~~~~l~~~~~~~ 126 (229)
T 3auf_A 64 GLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM-----------------RLVRGPMLTAFPNRI 126 (229)
T ss_dssp HHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC-----------------SCCCHHHHHHSTTCE
T ss_pred HHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh-----------------HhCCHHHHhhccCCE
Confidence 4578889999975421 1 112333 57888777652 467888888777788
Q ss_pred EEeCCC
Q 026841 187 VVLHPL 192 (232)
Q Consensus 187 i~MHcL 192 (232)
+-+||-
T Consensus 127 iNiHpS 132 (229)
T 3auf_A 127 LNIHPS 132 (229)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 889984
No 52
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=47.68 E-value=54 Score=27.68 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=51.6
Q ss_pred cCccchhhhHHHhhccC---cccccccCh----HHHHHHHHhCCCEEEEEcC------------HHHhhC--cCCEEEEc
Q 026841 93 IGKKFQLDDVIESQQFD---RDILNAIFE----DDIKDYLTSQGVEWEESAD------------LMEVAS--KCDVVYQT 151 (232)
Q Consensus 93 ~~~k~~l~~li~A~~~~---~~~L~va~P----~~i~e~l~~~G~~v~~~~D------------~~EAl~--~ADVVYtd 151 (232)
-|..-.|..|+.|.+-| .+ +..++. ..+++.+++.|+.+...+. +.+.++ +.|+|+.-
T Consensus 10 Sg~Gsnl~ali~~~~~~~l~~e-I~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~a 88 (211)
T 3p9x_A 10 SGSGTNAEAIIQSQKAGQLPCE-VALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLA 88 (211)
T ss_dssp CTTCHHHHHHHHHHHTTCCSSE-EEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred eCCchHHHHHHHHHHcCCCCcE-EEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEe
Confidence 35566677888876544 23 232332 2456888999998754321 112233 47888776
Q ss_pred cccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC
Q 026841 152 RIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP 193 (232)
Q Consensus 152 rwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP 193 (232)
.|. ..|.+++++..+..++-+||-.
T Consensus 89 gy~-----------------~Il~~~~l~~~~~~~iNiHpSL 113 (211)
T 3p9x_A 89 GYM-----------------RLVGPTLLGAYEGRIVNIHPSL 113 (211)
T ss_dssp SCC-----------------SCCCHHHHHHHTTSEEEEESSC
T ss_pred Cch-----------------hhcCHHHHhhccCCeEEECCcc
Confidence 642 4677888887777788888843
No 53
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=46.75 E-value=33 Score=30.93 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=27.5
Q ss_pred hccCcccccccChHH-HHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 106 QQFDRDILNAIFEDD-IKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 106 ~~~~~~~L~va~P~~-i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
+.||++ +.+.=+.. -.+.+...|+. ..++++|+++++|+|....-
T Consensus 184 ~~~G~~-V~~~dr~~~~~~~~~~~g~~--~~~~l~ell~~aDvV~l~~P 229 (351)
T 3jtm_A 184 KPFGCN-LLYHDRLQMAPELEKETGAK--FVEDLNEMLPKCDVIVINMP 229 (351)
T ss_dssp GGGCCE-EEEECSSCCCHHHHHHHCCE--ECSCHHHHGGGCSEEEECSC
T ss_pred HHCCCE-EEEeCCCccCHHHHHhCCCe--EcCCHHHHHhcCCEEEECCC
Confidence 456655 43332211 12334455765 45789999999999987764
No 54
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=45.52 E-value=30 Score=32.95 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=38.9
Q ss_pred HHHHHHhCCCEEEEEcCHH-----HhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC--
Q 026841 121 IKDYLTSQGVEWEESADLM-----EVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP-- 191 (232)
Q Consensus 121 i~e~l~~~G~~v~~~~D~~-----EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc-- 191 (232)
+++++++.|+.+...++.. +.++ +.|+|+.-.|- ..|.+++++..+-.++-+||
T Consensus 45 ~~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~d~iv~~~~~-----------------~il~~~~l~~~~~~~iNiH~sl 107 (660)
T 1z7e_A 45 VARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYR-----------------HLIYDEILQLAPAGAFNLHGSL 107 (660)
T ss_dssp HHHHHHHHTCCEECCSCTTSHHHHHHHHHHCCSEEEEESCC-----------------SCCCHHHHTTCTTCEEEEESSS
T ss_pred HHHHHHHcCCCEeccCCCCcHHHHHHHHhcCCCEEEEcCcc-----------------cccCHHHHhcCCCCeEEecCCc
Confidence 6788889999875544432 3333 47888776642 35788888877778898998
Q ss_pred CC
Q 026841 192 LP 193 (232)
Q Consensus 192 LP 193 (232)
||
T Consensus 108 LP 109 (660)
T 1z7e_A 108 LP 109 (660)
T ss_dssp TT
T ss_pred CC
Confidence 46
No 55
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=45.27 E-value=11 Score=33.41 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=17.5
Q ss_pred CccCHHHHHhcCCCcEEeCC--CC
Q 026841 172 YIVDQNVLRVMQKHAVVLHP--LP 193 (232)
Q Consensus 172 YqVt~elL~~Ak~dai~MHc--LP 193 (232)
..+.+++++..+..++=+|| ||
T Consensus 176 ~il~~~~l~~~~~~~iNiHpSlLP 199 (287)
T 3nrb_A 176 QILSDDLSAFLSGRCINIHHSFLP 199 (287)
T ss_dssp SCCCHHHHHHHTTSEEEEESSCTT
T ss_pred hhcCHHHHhhccCCeEEECccccc
Confidence 36788888888778888998 56
No 56
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=44.45 E-value=58 Score=27.76 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=43.3
Q ss_pred hccCcccccccChHHH-HHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCC
Q 026841 106 QQFDRDILNAIFEDDI-KDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQK 184 (232)
Q Consensus 106 ~~~~~~~L~va~P~~i-~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~ 184 (232)
..+|.+ +.+.-+..- .+.+.+.|.++.-..++++.++++|+|+...= ...++.+.++.+++
T Consensus 175 ~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p-----------------~~~i~~~~l~~mk~ 236 (293)
T 3d4o_A 175 AALGAK-VKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIP-----------------ALVVTANVLAEMPS 236 (293)
T ss_dssp HHTTCE-EEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCS-----------------SCCBCHHHHHHSCT
T ss_pred HhCCCE-EEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCC-----------------hHHhCHHHHHhcCC
Confidence 446654 444433221 23345667764333678889999999988761 12456777888888
Q ss_pred CcEEeCCC
Q 026841 185 HAVVLHPL 192 (232)
Q Consensus 185 dai~MHcL 192 (232)
++++....
T Consensus 237 ~~~lin~a 244 (293)
T 3d4o_A 237 HTFVIDLA 244 (293)
T ss_dssp TCEEEECS
T ss_pred CCEEEEec
Confidence 88887764
No 57
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=44.05 E-value=44 Score=29.78 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 124 YLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 124 ~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
.+...|+.. .+++|+++++|+|..-.=
T Consensus 202 ~~~~~g~~~---~~l~ell~~aDvV~l~~P 228 (335)
T 2g76_A 202 VSASFGVQQ---LPLEEIWPLCDFITVHTP 228 (335)
T ss_dssp HHHHTTCEE---CCHHHHGGGCSEEEECCC
T ss_pred hhhhcCcee---CCHHHHHhcCCEEEEecC
Confidence 345567653 489999999999987653
No 58
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=43.97 E-value=58 Score=28.98 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCEEEEEcCH-----HHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC-
Q 026841 120 DIKDYLTSQGVEWEESADL-----MEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP- 191 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D~-----~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc- 191 (232)
.+++++.+.|+.+....++ .+.++ +.|+++.-.| ...|.+++++..+-.++-+||
T Consensus 54 ~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y-----------------~~ilp~~~l~~~~~g~iNiHpS 116 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAY-----------------GLLLPKVVLDTPKLGCINVHGS 116 (318)
T ss_dssp HHHHHHHHTTCCEECCSCSCSHHHHHHHHTTCCSEEEESSC-----------------CSCCCHHHHTSSTTCEEEEESS
T ss_pred HHHHHHHHcCCCEEccCcCCCHHHHHHHHhcCCCEEEEeCc-----------------cccCCHHHHhhCcCCEEEeCCc
Confidence 4678889999987433332 23333 4788877664 246778888777767888998
Q ss_pred -CC
Q 026841 192 -LP 193 (232)
Q Consensus 192 -LP 193 (232)
||
T Consensus 117 lLP 119 (318)
T 3q0i_A 117 ILP 119 (318)
T ss_dssp STT
T ss_pred cCc
Confidence 55
No 59
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=42.13 E-value=20 Score=31.71 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCEEEEEcCH-----HHhhC--cCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 120 DIKDYLTSQGVEWEESADL-----MEVAS--KCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D~-----~EAl~--~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+++++++.|+.+...++. .+.++ +.|+++.-.| ...|.+++++..+-.++-+||-
T Consensus 44 ~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y-----------------~~ilp~~il~~~~~g~iNiHpS 106 (305)
T 2bln_A 44 SVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYY-----------------RHLIYDEILQLAPAGAFNLHGS 106 (305)
T ss_dssp CHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEEESC-----------------CSCCCHHHHTTCTTCEEEEESS
T ss_pred HHHHHHHHcCCCEECCCcCCcHHHHHHHHhcCCCEEEEecc-----------------ccccCHHHHhcCcCCEEEecCC
Confidence 3778888999987554432 13333 5788876554 2467888888777788889984
No 60
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=41.42 E-value=75 Score=27.09 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred hccCcccccccChHH-HHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCC
Q 026841 106 QQFDRDILNAIFEDD-IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQK 184 (232)
Q Consensus 106 ~~~~~~~L~va~P~~-i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~ 184 (232)
..+|.+ +.+.=+.. -.+.+.+.|.++....++++.++++|+|+...=. ..++.+.++.+++
T Consensus 177 ~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----------------~~i~~~~~~~mk~ 238 (300)
T 2rir_A 177 AALGAN-VKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----------------MILNQTVLSSMTP 238 (300)
T ss_dssp HHTTCE-EEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----------------CCBCHHHHTTSCT
T ss_pred HHCCCE-EEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----------------hhhCHHHHHhCCC
Confidence 445654 44433321 1123345676643346788999999999887621 2456677777888
Q ss_pred CcEEeCCC
Q 026841 185 HAVVLHPL 192 (232)
Q Consensus 185 dai~MHcL 192 (232)
++++.-..
T Consensus 239 g~~lin~a 246 (300)
T 2rir_A 239 KTLILDLA 246 (300)
T ss_dssp TCEEEECS
T ss_pred CCEEEEEe
Confidence 88876664
No 61
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=40.76 E-value=40 Score=29.43 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=26.6
Q ss_pred hccCcccccccChHHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 106 QQFDRDILNAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 106 ~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
..||++ +.+.=+..-.+.+.+.|++. .+++|+++++|+|..-.=
T Consensus 162 ~~~G~~-V~~~d~~~~~~~~~~~g~~~---~~l~ell~~aDvV~l~~p 205 (307)
T 1wwk_A 162 NALGMN-ILLYDPYPNEERAKEVNGKF---VDLETLLKESDVVTIHVP 205 (307)
T ss_dssp HHTTCE-EEEECSSCCHHHHHHTTCEE---CCHHHHHHHCSEEEECCC
T ss_pred HHCCCE-EEEECCCCChhhHhhcCccc---cCHHHHHhhCCEEEEecC
Confidence 345654 44333321113445667753 379999999999987653
No 62
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=40.41 E-value=95 Score=25.86 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=49.7
Q ss_pred CccchhhhHHHhhccC---cccccccCh---HHHHHHHHhCCCEEEEEc--C----------HHHhhC--cCCEEEEccc
Q 026841 94 GKKFQLDDVIESQQFD---RDILNAIFE---DDIKDYLTSQGVEWEESA--D----------LMEVAS--KCDVVYQTRI 153 (232)
Q Consensus 94 ~~k~~l~~li~A~~~~---~~~L~va~P---~~i~e~l~~~G~~v~~~~--D----------~~EAl~--~ADVVYtdrw 153 (232)
|..-.+..|+.|.+-+ .+-+-|++. ...++++++.|+.+...+ + +.+.++ +.|+|+.-.|
T Consensus 9 g~gsnl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy 88 (212)
T 1jkx_A 9 GNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGF 88 (212)
T ss_dssp SCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSC
T ss_pred CCcHHHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeCh
Confidence 4444567777774433 332223333 234688999999975532 1 113333 5788877664
Q ss_pred cccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC
Q 026841 154 QRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP 193 (232)
Q Consensus 154 qsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP 193 (232)
- ..|.+++++..+..++-+||-.
T Consensus 89 ~-----------------~il~~~~l~~~~~~~iNiHpSl 111 (212)
T 1jkx_A 89 M-----------------RILSPAFVSHYAGRLLNIHPSL 111 (212)
T ss_dssp C-----------------SCCCHHHHHHTTTSEEEEESSC
T ss_pred h-----------------hhCCHHHHhhccCCEEEEccCc
Confidence 2 3577788877777788888744
No 63
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=37.97 E-value=89 Score=29.61 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=29.9
Q ss_pred HHhhccCcccccccChHHHH-HHHHhCCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 103 IESQQFDRDILNAIFEDDIK-DYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 103 i~A~~~~~~~L~va~P~~i~-e~l~~~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..++.+|.. +.+.-+.... +.+...|.++ .+++++++++|+|+..+
T Consensus 291 ~~lka~Ga~-Viv~d~~~~~~~~A~~~Ga~~---~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 291 EAMKGQGAR-VSVTEIDPINALQAMMEGFDV---VTVEEAIGDADIVVTAT 337 (494)
T ss_dssp HHHHHTTCE-EEEECSCHHHHHHHHHTTCEE---CCHHHHGGGCSEEEECS
T ss_pred HHHHHCCCE-EEEEeCCHHHHHHHHHcCCEE---ecHHHHHhCCCEEEECC
Confidence 334556764 5444443332 4556778863 57889999999999875
No 64
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=36.35 E-value=23 Score=33.23 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..+++.+.|++||++|||+|+..-
T Consensus 60 ~~~I~~TtD~~eAl~dADfVI~ai 83 (450)
T 3fef_A 60 RWRYEAVSTLKKALSAADIVIISI 83 (450)
T ss_dssp CEEEEEESSHHHHHTTCSEEEECC
T ss_pred CCeEEEECCHHHHhcCCCEEEecc
Confidence 457888999999999999998766
No 65
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=36.03 E-value=24 Score=31.15 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=50.3
Q ss_pred cccCccchhhhHHHhhccC---cccccccC---hHHHHHHHHhCCCEEEEEc----C-------HHHhhC--cCCEEEEc
Q 026841 91 FTIGKKFQLDDVIESQQFD---RDILNAIF---EDDIKDYLTSQGVEWEESA----D-------LMEVAS--KCDVVYQT 151 (232)
Q Consensus 91 ~~~~~k~~l~~li~A~~~~---~~~L~va~---P~~i~e~l~~~G~~v~~~~----D-------~~EAl~--~ADVVYtd 151 (232)
|--|..=-|.+|+.+.+-| .+ +.+++ |+++++.+++.|+.+.... + +.+.++ +.|+|+.-
T Consensus 95 l~Sg~g~nl~~ll~~~~~g~l~~~-i~~Visn~p~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla 173 (288)
T 3obi_A 95 LVSQSDHCLADILYRWRVGDLHMI-PTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLA 173 (288)
T ss_dssp EECSCCHHHHHHHHHHHTTSSCEE-EEEEEESSCGGGSCCTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEES
T ss_pred EEcCCCCCHHHHHHHHHCCCCCeE-EEEEEcCCChhHHHHHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhh
Confidence 3346666677888776544 23 23222 2456666777787765432 0 112233 36777666
Q ss_pred cccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC--CC
Q 026841 152 RIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP--LP 193 (232)
Q Consensus 152 rwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc--LP 193 (232)
+|- ..+.+++++..+..++=+|| ||
T Consensus 174 gy~-----------------~il~~~~l~~~~~~~iNiHpSlLP 200 (288)
T 3obi_A 174 RYM-----------------QILSDEMSARLAGRCINIHHSFLP 200 (288)
T ss_dssp SCC-----------------SCCCHHHHHHTTTSEEEEEEECSS
T ss_pred hhh-----------------hhCCHHHHhhhcCCeEEeCccccc
Confidence 642 35777888877777888888 56
No 66
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=35.71 E-value=43 Score=30.14 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=31.8
Q ss_pred EEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 134 ESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 134 ~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
..++++|+++++|+|..-.-.... ....++.+.++.+|+++++.-+.
T Consensus 217 ~~~~l~ell~~sDvV~l~~Plt~~------------T~~li~~~~l~~mk~gailIN~a 263 (345)
T 4g2n_A 217 YHDTLDSLLGASDIFLIAAPGRPE------------LKGFLDHDRIAKIPEGAVVINIS 263 (345)
T ss_dssp ECSSHHHHHHTCSEEEECSCCCGG------------GTTCBCHHHHHHSCTTEEEEECS
T ss_pred EeCCHHHHHhhCCEEEEecCCCHH------------HHHHhCHHHHhhCCCCcEEEECC
Confidence 346899999999999877632211 12346777777777777776664
No 67
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=35.46 E-value=32 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=17.8
Q ss_pred hCCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 127 SQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 127 ~~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..|+. ...+++|+++++|+|..-.
T Consensus 208 ~~g~~--~~~~l~ell~~aDvV~l~~ 231 (347)
T 1mx3_A 208 ALGLQ--RVSTLQDLLFHSDCVTLHC 231 (347)
T ss_dssp HHTCE--ECSSHHHHHHHCSEEEECC
T ss_pred hcCCe--ecCCHHHHHhcCCEEEEcC
Confidence 34554 3458899999999998755
No 68
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=35.13 E-value=32 Score=32.07 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHhCCCEEEE---------------EcCHHHhhCcCCEEEEccccc
Q 026841 121 IKDYLTSQGVEWEE---------------SADLMEVASKCDVVYQTRIQR 155 (232)
Q Consensus 121 i~e~l~~~G~~v~~---------------~~D~~EAl~~ADVVYtdrwqs 155 (232)
+.+.|.+.|+++.+ .+|++|++++||+|+..|+..
T Consensus 357 i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv~~~~~~ 406 (432)
T 3pid_A 357 IMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVIISNRMAE 406 (432)
T ss_dssp HHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEECSSCCG
T ss_pred HHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEEECCCCh
Confidence 34566667765533 478999999999999999754
No 69
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=33.79 E-value=78 Score=28.16 Aligned_cols=83 Identities=7% Similarity=0.075 Sum_probs=48.8
Q ss_pred cccCccchh---hhHHHhhccCcccccccC-------hHHHHHHHHhCCCEEEEEcCH----------HHhhC--cCCEE
Q 026841 91 FTIGKKFQL---DDVIESQQFDRDILNAIF-------EDDIKDYLTSQGVEWEESADL----------MEVAS--KCDVV 148 (232)
Q Consensus 91 ~~~~~k~~l---~~li~A~~~~~~~L~va~-------P~~i~e~l~~~G~~v~~~~D~----------~EAl~--~ADVV 148 (232)
|.-|..|+. +.|++. +.+-+-|+. |..+.+++++.|+.+....+. .+.++ ++|++
T Consensus 27 f~G~~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dli 103 (329)
T 2bw0_A 27 VIGQSLFGQEVYCHLRKE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELN 103 (329)
T ss_dssp EECCHHHHHHHHHHHHHT---TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEE
T ss_pred EEcCcHHHHHHHHHHHHC---CCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEE
Confidence 333555764 344433 344344444 346778888999987554321 22332 46777
Q ss_pred EEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCCC
Q 026841 149 YQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP 193 (232)
Q Consensus 149 YtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcLP 193 (232)
+.-.| ...|.+++++..+-.++-+||-.
T Consensus 104 v~a~y-----------------~~ilp~~il~~~~~g~iNiHpSL 131 (329)
T 2bw0_A 104 VLPFC-----------------SQFIPMEIISAPRHGSIIYHPSL 131 (329)
T ss_dssp EESSC-----------------SSCCCHHHHTCSTTCEEEEESSC
T ss_pred EEeeh-----------------hhhCCHHHHhhCcCCEEEEcCCc
Confidence 76654 13577788877777788888744
No 70
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=33.71 E-value=55 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHhCCCEEEEE---cCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQGVEWEES---ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~v~~~---~D~~EAl~~ADVVYtdr 152 (232)
+.+++.|.++... +|+.+.+.+||.||...
T Consensus 55 ~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG 87 (229)
T 1fy2_A 55 EVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG 87 (229)
T ss_dssp HHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC
T ss_pred HHHHHCCCEEEEEeccccHHHHHhcCCEEEECC
Confidence 4456778888777 66778999999999987
No 71
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=31.99 E-value=46 Score=29.75 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
|..+...++++++++++|+|++.+-.
T Consensus 179 g~~~~~~~~~~eav~~aDiVi~aTps 204 (350)
T 1x7d_A 179 GLTIRRASSVAEAVKGVDIITTVTAD 204 (350)
T ss_dssp TCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred CceEEEeCCHHHHHhcCCEEEEeccC
Confidence 77777889999999999999987753
No 72
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=31.77 E-value=1.3e+02 Score=26.61 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=33.0
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+++|.++++|||..-.=-.+ .....||.+.++.+|+++++.-..
T Consensus 186 ~~l~ell~~sDivslh~Plt~------------~T~~li~~~~l~~mk~~a~lIN~a 230 (334)
T 3kb6_A 186 TSLDELLKESDVISLHVPYTK------------ETHHMINEERISLMKDGVYLINTA 230 (334)
T ss_dssp CCHHHHHHHCSEEEECCCCCT------------TTTTCBCHHHHHHSCTTEEEEECS
T ss_pred cCHHHHHhhCCEEEEcCCCCh------------hhccCcCHHHHhhcCCCeEEEecC
Confidence 578999999999987663221 123568888888888888877664
No 73
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=30.59 E-value=60 Score=28.58 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.7
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..+++.+.|+++++++||+|+...
T Consensus 63 ~~~i~~t~d~~ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 63 NVSVRAEYSYEAALTGADCVIVTA 86 (331)
T ss_dssp CCCEEEECSHHHHHTTCSEEEECC
T ss_pred CCEEEEeCCHHHHhCCCCEEEEcc
Confidence 457778899999999999999876
No 74
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=30.38 E-value=1.7e+02 Score=27.76 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCccCHHHHHhcCCCcEEeCCCCCCcccc
Q 026841 171 KYIVDQNVLRVMQKHAVVLHPLPRLDEIT 199 (232)
Q Consensus 171 ~YqVt~elL~~Ak~dai~MHcLPRg~EIs 199 (232)
...++.+.++.++++++|........|++
T Consensus 331 ~~vl~~e~l~~mk~gaiVvNaG~~~~Ei~ 359 (488)
T 3ond_A 331 KDIIMLDHMKKMKNNAIVCNIGHFDNEID 359 (488)
T ss_dssp SCSBCHHHHTTSCTTEEEEESSSTTTTBT
T ss_pred hhhhhHHHHHhcCCCeEEEEcCCCCcccc
Confidence 35678888888899999987765333443
No 75
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=30.34 E-value=70 Score=27.94 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=19.6
Q ss_pred HHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 125 LTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 125 l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
+...|+.+ .+++++++++|+|..-.=
T Consensus 180 ~~~~g~~~---~~l~ell~~aDvVvl~~P 205 (313)
T 2ekl_A 180 AEKINAKA---VSLEELLKNSDVISLHVT 205 (313)
T ss_dssp HHHTTCEE---CCHHHHHHHCSEEEECCC
T ss_pred HHhcCcee---cCHHHHHhhCCEEEEecc
Confidence 45567653 488999999999987663
No 76
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=30.28 E-value=81 Score=27.69 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=19.3
Q ss_pred HHHhCCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 124 YLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 124 ~l~~~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
.+...|..+ .+++++++++|+|+.-.
T Consensus 187 ~~~~~g~~~---~~l~~~l~~aDvVil~v 212 (334)
T 2dbq_A 187 VERELNAEF---KPLEDLLRESDFVVLAV 212 (334)
T ss_dssp HHHHHCCEE---CCHHHHHHHCSEEEECC
T ss_pred hHhhcCccc---CCHHHHHhhCCEEEECC
Confidence 344557653 58999999999998766
No 77
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=29.62 E-value=47 Score=29.44 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHhCCCEEEEEcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 125 LTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 125 l~~~G~~v~~~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
....|+. ..+++|+++++|||..-.=.... ....++.+.++.+++++++.-+
T Consensus 184 ~~~~g~~---~~~l~ell~~aDvV~l~~P~t~~------------t~~li~~~~l~~mk~gailIN~ 235 (330)
T 4e5n_A 184 EQRLGLR---QVACSELFASSDFILLALPLNAD------------TLHLVNAELLALVRPGALLVNP 235 (330)
T ss_dssp HHHHTEE---ECCHHHHHHHCSEEEECCCCSTT------------TTTCBCHHHHTTSCTTEEEEEC
T ss_pred HHhcCce---eCCHHHHHhhCCEEEEcCCCCHH------------HHHHhCHHHHhhCCCCcEEEEC
Confidence 3445654 24899999999999876632211 1123455566666666655544
No 78
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=28.86 E-value=1.1e+02 Score=27.52 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCEEEEEcC-------HHHhhCcCCEEEEcc
Q 026841 120 DIKDYLTSQGVEWEESAD-------LMEVASKCDVVYQTR 152 (232)
Q Consensus 120 ~i~e~l~~~G~~v~~~~D-------~~EAl~~ADVVYtdr 152 (232)
++.+++++.|.++....+ +.+.++++|+|++..
T Consensus 31 ~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~ 70 (351)
T 3jtm_A 31 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTP 70 (351)
T ss_dssp GCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECT
T ss_pred HHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEcc
Confidence 456778888988876543 457899999999743
No 79
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=28.47 E-value=64 Score=30.03 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 119 ~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
+++.+.+.+....++.+.|+++++++||+|+.-.
T Consensus 84 ~~l~~ll~~~~~~l~~ttd~~ea~~~aDvViiaV 117 (432)
T 3pid_A 84 KEIQEYLAEKPLNFRATTDKHDAYRNADYVIIAT 117 (432)
T ss_dssp HHHHHHHHHSCCCEEEESCHHHHHTTCSEEEECC
T ss_pred ccHHHHHhhccCCeEEEcCHHHHHhCCCEEEEeC
Confidence 3444555443346778999999999999998765
No 80
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=27.90 E-value=73 Score=27.91 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=27.2
Q ss_pred hccCcccccccCh-HHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 106 QQFDRDILNAIFE-DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 106 ~~~~~~~L~va~P-~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
..||++ +.+.=+ ..-.+.+...|+. ..++++|+++++|+|+.-.=
T Consensus 166 ~~~G~~-V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDvVil~~p 211 (320)
T 1gdh_A 166 QGFDMD-IDYFDTHRASSSDEASYQAT--FHDSLDSLLSVSQFFSLNAP 211 (320)
T ss_dssp HTTTCE-EEEECSSCCCHHHHHHHTCE--ECSSHHHHHHHCSEEEECCC
T ss_pred HHCCCE-EEEECCCCcChhhhhhcCcE--EcCCHHHHHhhCCEEEEecc
Confidence 346654 444333 1111234456775 34589999999999987653
No 81
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=27.68 E-value=77 Score=29.81 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=19.3
Q ss_pred HHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 125 LTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 125 l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
+...|+.. .+++++++++|+|..-.=
T Consensus 180 a~~~g~~~---~~l~e~~~~aDvV~l~~P 205 (529)
T 1ygy_A 180 AAQLGIEL---LSLDDLLARADFISVHLP 205 (529)
T ss_dssp HHHHTCEE---CCHHHHHHHCSEEEECCC
T ss_pred HHhcCcEE---cCHHHHHhcCCEEEECCC
Confidence 44557653 278999999999988763
No 82
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=26.62 E-value=1.9e+02 Score=26.37 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=30.8
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+++|+++++|||..-.--.... ++.....++.+.++.+|+++++.-+.
T Consensus 162 ~sl~ell~~aDiV~l~~Plt~~g--------~~~T~~li~~~~l~~mk~gailIN~a 210 (381)
T 3oet_A 162 RTLDELVQEADVLTFHTPLYKDG--------PYKTLHLADETLIRRLKPGAILINAC 210 (381)
T ss_dssp CCHHHHHHHCSEEEECCCCCCSS--------TTCCTTSBCHHHHHHSCTTEEEEECS
T ss_pred CCHHHHHhhCCEEEEcCcCCccc--------cccchhhcCHHHHhcCCCCcEEEECC
Confidence 46788999999998776432110 01123456777777777777776553
No 83
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=25.89 E-value=1.4e+02 Score=26.45 Aligned_cols=44 Identities=0% Similarity=0.108 Sum_probs=25.8
Q ss_pred cCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCC
Q 026841 136 ADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHc 191 (232)
.+++|+++++|+|..-.--... ....++.+.++.+|+++++.-+
T Consensus 183 ~~l~ell~~aDvV~l~lPlt~~------------t~~li~~~~l~~mk~gailIN~ 226 (324)
T 3evt_A 183 TATADALATANFIVNALPLTPT------------THHLFSTELFQQTKQQPMLINI 226 (324)
T ss_dssp GGCHHHHHHCSEEEECCCCCGG------------GTTCBSHHHHHTCCSCCEEEEC
T ss_pred CCHHHHHhhCCEEEEcCCCchH------------HHHhcCHHHHhcCCCCCEEEEc
Confidence 4678899999999876532211 1123455555555555555544
No 84
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=25.56 E-value=37 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=35.7
Q ss_pred cCccchhhhHHHhhc--cCcccccccChH---HHHHHHH-hCCCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 93 IGKKFQLDDVIESQQ--FDRDILNAIFED---DIKDYLT-SQGVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 93 ~~~k~~l~~li~A~~--~~~~~L~va~P~---~i~e~l~-~~G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
.|-..+=..+..|.. ++.+.++|.=.. .+.+.+. ..|..++.. |++|+++++|||++-+-.
T Consensus 127 IGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 127 FGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRS 193 (313)
T ss_dssp ECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCC
T ss_pred ECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCC
Confidence 355544444444421 233335444332 2322222 358887777 999999999999988843
No 85
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Probab=24.71 E-value=64 Score=27.93 Aligned_cols=45 Identities=9% Similarity=0.126 Sum_probs=28.9
Q ss_pred CcccccccCh--HHHHHHHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 109 DRDILNAIFE--DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 109 ~~~~L~va~P--~~i~e~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
|.+.+.+.=. +...+.++..|.++...++++|+++++|+|++-+-
T Consensus 159 g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp 205 (312)
T 2i99_A 159 SFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTL 205 (312)
T ss_dssp CCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCC
T ss_pred CCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeC
Confidence 5433554432 33445555556334467899999999999998874
No 86
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=24.19 E-value=88 Score=27.27 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=18.8
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..++..+.| .+++++||+|+...
T Consensus 55 ~~~i~~t~d-~~a~~~aDiVViaa 77 (294)
T 1oju_A 55 YPKIVGGAD-YSLLKGSEIIVVTA 77 (294)
T ss_dssp CCEEEEESC-GGGGTTCSEEEECC
T ss_pred CCEEEEeCC-HHHhCCCCEEEECC
Confidence 457777778 89999999998764
No 87
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=23.86 E-value=87 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHHHhCCCEEEEEc----CHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~v~~~~----D~~EAl~~ADVVYtdr 152 (232)
..+...|+++++.+ ++++++++||+|++..
T Consensus 179 ~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Av 212 (285)
T 3l07_A 179 QLLLNAKATVTTCHRFTTDLKSHTTKADILIVAV 212 (285)
T ss_dssp HHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECC
T ss_pred HHHHHCCCeEEEEeCCchhHHHhcccCCEEEECC
Confidence 45567799998875 7899999999999987
No 88
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=23.84 E-value=1.3e+02 Score=26.36 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=14.1
Q ss_pred cCHHHhhCcCCEEEEcc
Q 026841 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdr 152 (232)
.+++|+++++|+|..-.
T Consensus 185 ~~l~ell~~aDiV~l~~ 201 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLL 201 (315)
T ss_dssp HHHHHHHHTCSEEEECC
T ss_pred CCHHHHHhhCCEEEEec
Confidence 46789999999998765
No 89
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=23.64 E-value=86 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.4
Q ss_pred EcCHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEe
Q 026841 135 SADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVL 189 (232)
Q Consensus 135 ~~D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~M 189 (232)
..+++|+++++||++..+ .+..+|+++++.++++.+++
T Consensus 254 ~~~L~eav~~ADVlIG~S-----------------ap~l~t~emVk~Ma~~pIIf 291 (388)
T 1vl6_A 254 SGDLETALEGADFFIGVS-----------------RGNILKPEWIKKMSRKPVIF 291 (388)
T ss_dssp CSCHHHHHTTCSEEEECS-----------------CSSCSCHHHHTTSCSSCEEE
T ss_pred hhhHHHHHccCCEEEEeC-----------------CCCccCHHHHHhcCCCCEEE
Confidence 567999999999998774 13578999998887765543
No 90
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=23.45 E-value=1.5e+02 Score=26.73 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=30.6
Q ss_pred HHHhhCcCCEEEEcc-ccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC-CCC
Q 026841 138 LMEVASKCDVVYQTR-IQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL-PRL 195 (232)
Q Consensus 138 ~~EAl~~ADVVYtdr-wqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL-PRg 195 (232)
+++.++++|||+... |.. . ..+..++.+.++.++++.++.=.. |||
T Consensus 249 l~e~~~~aDvVI~~~~~pg--~----------~ap~li~~~~l~~mk~g~vIVdva~~~G 296 (401)
T 1x13_A 249 FAAQAKEVDIIVTTALIPG--K----------PAPKLITREMVDSMKAGSVIVDLAAQNG 296 (401)
T ss_dssp HHHHHHHCSEEEECCCCTT--S----------CCCCCBCHHHHHTSCTTCEEEETTGGGT
T ss_pred HHHHhCCCCEEEECCccCC--C----------CCCeeeCHHHHhcCCCCcEEEEEcCCCC
Confidence 678888999999875 321 1 023557888888888877665443 443
No 91
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=23.25 E-value=74 Score=29.08 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=31.6
Q ss_pred cCHHHhhCcCCEEEEcccc-ccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 136 ADLMEVASKCDVVYQTRIQ-RERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdrwq-sEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
.+++|+++++|||..-.=. .++ ++.....++.+.++.++++++++.+.
T Consensus 159 ~~l~ell~~aDvV~l~~Plt~~g---------~~~T~~li~~~~l~~mk~gailIN~s 207 (380)
T 2o4c_A 159 VSLERLLAEADVISLHTPLNRDG---------EHPTRHLLDEPRLAALRPGTWLVNAS 207 (380)
T ss_dssp CCHHHHHHHCSEEEECCCCCSSS---------SSCCTTSBCHHHHHTSCTTEEEEECS
T ss_pred CCHHHHHHhCCEEEEeccCcccc---------ccchhhhcCHHHHhhCCCCcEEEECC
Confidence 4678889999999886522 211 11223456777777777777777665
No 92
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Probab=23.24 E-value=50 Score=30.44 Aligned_cols=23 Identities=9% Similarity=-0.130 Sum_probs=20.1
Q ss_pred CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 130 VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 130 ~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
.+++.+.|.+++++|||+|+..-
T Consensus 59 ~~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 59 FKVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp SEEEECSSHHHHHTTCSEEEECC
T ss_pred eEEEEeCCHHHHhCCCCEEEEcC
Confidence 77777789999999999998776
No 93
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=23.16 E-value=2.7e+02 Score=24.12 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=14.4
Q ss_pred cCHHHhhCcCCEEEEcc
Q 026841 136 ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 136 ~D~~EAl~~ADVVYtdr 152 (232)
.+++++++++|+|..-.
T Consensus 166 ~~l~ell~~aDvV~l~~ 182 (303)
T 1qp8_A 166 NSLEEALREARAAVCAL 182 (303)
T ss_dssp SCSHHHHTTCSEEEECC
T ss_pred CCHHHHHhhCCEEEEeC
Confidence 47789999999998776
No 94
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=23.11 E-value=52 Score=27.66 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=39.5
Q ss_pred chhhhHHHh-hccCcccccccChHHHH-HHHH--------hCCC-----------EEEEEcCHHHhhCcCC-------EE
Q 026841 97 FQLDDVIES-QQFDRDILNAIFEDDIK-DYLT--------SQGV-----------EWEESADLMEVASKCD-------VV 148 (232)
Q Consensus 97 ~~l~~li~A-~~~~~~~L~va~P~~i~-e~l~--------~~G~-----------~v~~~~D~~EAl~~AD-------VV 148 (232)
+-++|+-.| +.||+..|.++-|.... +.+. ..|. .+.+.++++||+++++ .|
T Consensus 29 ~dihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~~~~~~g~~p~v 108 (192)
T 3dcm_X 29 LDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLI 108 (192)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHHSSCCEE
T ss_pred ccHHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHHHHhhcCCccEE
Confidence 567777655 78999999999996432 1121 1222 4578999999999999 66
Q ss_pred EEcc
Q 026841 149 YQTR 152 (232)
Q Consensus 149 Ytdr 152 (232)
+.++
T Consensus 109 vaTs 112 (192)
T 3dcm_X 109 FFTS 112 (192)
T ss_dssp EECC
T ss_pred EEeC
Confidence 6654
No 95
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=22.88 E-value=87 Score=28.17 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=19.5
Q ss_pred CEEEEEcCHHHhhCcCCEEEEcc
Q 026841 130 VEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 130 ~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
.++....|..++++|+|||+.+.
T Consensus 86 ~~~~~~~~~~~a~~~advVvi~a 108 (345)
T 4h7p_A 86 DKVVVTADPRVAFDGVAIAIMCG 108 (345)
T ss_dssp EEEEEESCHHHHTTTCSEEEECC
T ss_pred CcEEEcCChHHHhCCCCEEEECC
Confidence 35677899999999999998765
No 96
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=22.86 E-value=91 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.6
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcccc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdrwq 154 (232)
|..+. .+|+++++ ++|+|++.+-.
T Consensus 174 ~~~~~-~~~~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 174 GISAS-VQPAEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp TCCEE-ECCHHHHT-SSSEEEECCCC
T ss_pred CceEE-ECCHHHHh-CCCEEEEeeCC
Confidence 35566 88999999 99999998853
No 97
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=22.79 E-value=2.5e+02 Score=24.52 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=31.2
Q ss_pred CHHHhhCcCCEEEEccccccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 137 DLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 137 D~~EAl~~ADVVYtdrwqsEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
+++++++++|+|..-.=.... ....++.+.++.+|+++++.-+.
T Consensus 191 ~l~ell~~aDvV~~~~p~t~~------------t~~li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 191 SLDEVLEKSDIITIHAPYIKE------------NGAVVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp CHHHHHHHCSEEEECCCCCTT------------TCCSBCHHHHHTSCTTEEEEECS
T ss_pred CHHHHHhhCCEEEEecCCchH------------HHHHhCHHHHhhCCCCcEEEECC
Confidence 678889999999875522110 12347788888888888887776
No 98
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=22.66 E-value=2.1e+02 Score=23.89 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=49.6
Q ss_pred CccchhhhHHHhhc--cCcccccccChH--HHHHHHHhCCCEEEEEcCH-------------HHhhC--cCCEEEEcccc
Q 026841 94 GKKFQLDDVIESQQ--FDRDILNAIFED--DIKDYLTSQGVEWEESADL-------------MEVAS--KCDVVYQTRIQ 154 (232)
Q Consensus 94 ~~k~~l~~li~A~~--~~~~~L~va~P~--~i~e~l~~~G~~v~~~~D~-------------~EAl~--~ADVVYtdrwq 154 (232)
|..=.|..|+.|.. ++.+-.-|+.-. ..++.+++.|+.+... +. .+.++ +.|++..-.|.
T Consensus 21 G~gsnl~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~gIp~~~~-~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 21 GTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTV-RLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp SCCHHHHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTTCCEEEC-CGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred CChHHHHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHcCCCEEEe-CcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 55666778887753 233322233222 3467888999987554 32 12333 47888776652
Q ss_pred ccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEeCCC
Q 026841 155 RERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPL 192 (232)
Q Consensus 155 sEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~MHcL 192 (232)
..+.+++++..+..++-+||-
T Consensus 100 -----------------~iL~~~~l~~~~~~~iNiHpS 120 (215)
T 3da8_A 100 -----------------RILGPQFLSRFYGRTLNTHPA 120 (215)
T ss_dssp -----------------SCCCHHHHHHHTTTEEEEESS
T ss_pred -----------------hhCCHHHHhhccCCeEEeCcc
Confidence 357778887777778888883
No 99
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=22.59 E-value=1.3e+02 Score=27.55 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=19.6
Q ss_pred HHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 125 LTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 125 l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
+...|+. ...+++|.++++|||..-.=
T Consensus 230 ~~~~G~~--~~~~l~ell~~aDvV~l~~P 256 (393)
T 2nac_A 230 EKELNLT--WHATREDMYPVCDVVTLNCP 256 (393)
T ss_dssp HHHHTCE--ECSSHHHHGGGCSEEEECSC
T ss_pred HhhcCce--ecCCHHHHHhcCCEEEEecC
Confidence 3445655 34678999999999987653
No 100
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=22.11 E-value=99 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 124 YLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 124 ~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
.+...|+.+ .+++++++++|+|..-.=
T Consensus 183 ~~~~~g~~~---~~l~e~l~~aDiVil~vp 209 (333)
T 2d0i_A 183 VEKELKARY---MDIDELLEKSDIVILALP 209 (333)
T ss_dssp HHHHHTEEE---CCHHHHHHHCSEEEECCC
T ss_pred hhhhcCcee---cCHHHHHhhCCEEEEcCC
Confidence 334456542 389999999999987663
No 101
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=22.06 E-value=65 Score=29.99 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=20.3
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..++..+.|.+++++|||+|+...
T Consensus 68 ~~~i~~t~D~~eal~gAD~VVita 91 (450)
T 1s6y_A 68 PIEIHLTLDRRRALDGADFVTTQF 91 (450)
T ss_dssp CCEEEEESCHHHHHTTCSEEEECC
T ss_pred CcEEEEeCCHHHHhCCCCEEEEcC
Confidence 457777899999999999998765
No 102
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=22.00 E-value=2e+02 Score=26.61 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=21.3
Q ss_pred HHHHhCCCEEEE--------------EcCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQGVEWEE--------------SADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~v~~--------------~~D~~EAl~~ADVVYtdr 152 (232)
..++..|.++.. ..+++|+++++|+|..-.
T Consensus 173 ~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhv 216 (416)
T 3k5p_A 173 NLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHV 216 (416)
T ss_dssp HHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECC
T ss_pred HHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeC
Confidence 445566766544 347889999999998765
No 103
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=21.63 E-value=1e+02 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=24.9
Q ss_pred HHHHhCCCEEEEEc----CHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQGVEWEESA----DLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~v~~~~----D~~EAl~~ADVVYtdr 152 (232)
..+...|+++++.+ ++++.+++||+|++..
T Consensus 178 ~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Av 211 (285)
T 3p2o_A 178 TMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAA 211 (285)
T ss_dssp HHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECS
T ss_pred HHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECC
Confidence 45567789988864 7899999999999987
No 104
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=21.49 E-value=1.3e+02 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=20.5
Q ss_pred HHHhCCCEEEEEcCHHHhhCcCCEEEEccc
Q 026841 124 YLTSQGVEWEESADLMEVASKCDVVYQTRI 153 (232)
Q Consensus 124 ~l~~~G~~v~~~~D~~EAl~~ADVVYtdrw 153 (232)
.+...|+. ...+++++++++|+|..-.=
T Consensus 203 ~~~~~g~~--~~~~l~ell~~aDvV~l~~P 230 (364)
T 2j6i_A 203 AEEKVGAR--RVENIEELVAQADIVTVNAP 230 (364)
T ss_dssp HHHHTTEE--ECSSHHHHHHTCSEEEECCC
T ss_pred HHHhcCcE--ecCCHHHHHhcCCEEEECCC
Confidence 34456654 34689999999999988663
No 105
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=21.40 E-value=2.6e+02 Score=24.24 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=22.1
Q ss_pred HHHHhCCCEEEEE-----------cCHHHhhCcCCEEEEcc
Q 026841 123 DYLTSQGVEWEES-----------ADLMEVASKCDVVYQTR 152 (232)
Q Consensus 123 e~l~~~G~~v~~~-----------~D~~EAl~~ADVVYtdr 152 (232)
..++..|.++... .+++|+++++|+|..-.
T Consensus 161 ~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~ 201 (311)
T 2cuk_A 161 KRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHT 201 (311)
T ss_dssp HHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECC
T ss_pred HHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeC
Confidence 4556677776543 36789999999998865
No 106
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=20.52 E-value=80 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.208 Sum_probs=20.1
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
...++.+.|+.+++++||+|++-.
T Consensus 69 ~g~l~~ttd~~ea~~~aDvvii~V 92 (446)
T 4a7p_A 69 AGRLSFTTDLAEGVKDADAVFIAV 92 (446)
T ss_dssp TTCEEEESCHHHHHTTCSEEEECC
T ss_pred cCCEEEECCHHHHHhcCCEEEEEc
Confidence 345678999999999999998763
No 107
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=20.45 E-value=1.9e+02 Score=25.66 Aligned_cols=77 Identities=12% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHhhccCcccccccChHHHHHHHHhCCCEEEEEcC---------------------------HHHhhCcCCEEEEcccc
Q 026841 102 VIESQQFDRDILNAIFEDDIKDYLTSQGVEWEESAD---------------------------LMEVASKCDVVYQTRIQ 154 (232)
Q Consensus 102 li~A~~~~~~~L~va~P~~i~e~l~~~G~~v~~~~D---------------------------~~EAl~~ADVVYtdrwq 154 (232)
+..|..+|..-.-+-.-++-.+.+++.|.++...+. +++.++++|+|+...-.
T Consensus 188 a~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~ 267 (384)
T 1l7d_A 188 IATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALI 267 (384)
T ss_dssp HHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCcc
Q ss_pred ccccCCChhHHHHhhcCCccCHHHHHhcCCCcEEe
Q 026841 155 RERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVL 189 (232)
Q Consensus 155 sEr~~~~~~e~~~~~~~YqVt~elL~~Ak~dai~M 189 (232)
..... +..++.+.++.++++.++.
T Consensus 268 pg~~~-----------~~li~~~~l~~mk~g~viv 291 (384)
T 1l7d_A 268 PGKPA-----------PVLITEEMVTKMKPGSVII 291 (384)
T ss_dssp TTSCC-----------CCCSCHHHHTTSCTTCEEE
T ss_pred CCCCC-----------CeeeCHHHHhcCCCCCEEE
No 108
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=20.25 E-value=74 Score=29.88 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCEEEEEcCHHHhhCcCCEEEEcc
Q 026841 129 GVEWEESADLMEVASKCDVVYQTR 152 (232)
Q Consensus 129 G~~v~~~~D~~EAl~~ADVVYtdr 152 (232)
..++..+.|+++|++|||+|+...
T Consensus 87 ~~~I~~t~D~~eal~~AD~VViaa 110 (472)
T 1u8x_X 87 DIEFAATTDPEEAFTDVDFVMAHI 110 (472)
T ss_dssp TSEEEEESCHHHHHSSCSEEEECC
T ss_pred CCEEEEECCHHHHHcCCCEEEEcC
Confidence 467888899999999999998765
Done!