RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026841
(232 letters)
>gnl|CDD|178142 PLN02527, PLN02527, aspartate carbamoyltransferase.
Length = 306
Score = 239 bits (612), Expect = 4e-79
Identities = 98/114 (85%), Positives = 107/114 (93%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
DDIKDYLTS+GVEWEES+DLMEVASKCDV+YQTRIQRERFGER DLYE ARGKYIVD+ V
Sbjct: 193 DDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKV 252
Query: 179 LRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVGW 232
+ V+ KHAVV+HPLPRLDEIT DVD+DPRAAYFRQAKNGL+IRMALLKLLL GW
Sbjct: 253 MDVLPKHAVVMHPLPRLDEITTDVDSDPRAAYFRQAKNGLFIRMALLKLLLGGW 306
Score = 34.3 bits (79), Expect = 0.036
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 100 DDVIESQQFDRDILNAIFE 118
DVIE+QQFDR++L +FE
Sbjct: 1 SDVIEAQQFDREMLELLFE 19
>gnl|CDD|215776 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase,
Asp/Orn binding domain.
Length = 156
Score = 126 bits (318), Expect = 1e-36
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 115 AIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIV 174
+ + K+ L S G+ + DL E DVVY R Q+ER E+ + +Y V
Sbjct: 45 ELLDKAKKEALKSGGITITVTDDLEEALKGADVVYTDRWQKEREER----LEKFKPRYQV 100
Query: 175 DQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
+ +L+ + A+ +HPLP R +EIT DVD PR+ F QA+NGL++RMALL LL
Sbjct: 101 TEELLKKAKPDAIFMHPLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLALL 156
>gnl|CDD|223614 COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain
[Nucleotide transport and metabolism].
Length = 316
Score = 126 bits (319), Expect = 4e-35
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
+ I + L +G E EV + DV+Y R+Q+ERF + + Y + + Y +
Sbjct: 199 EYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFND-PEEYSKVKEYYKLYGLT 257
Query: 179 L-RVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
L R+ + A+V+HPLP R+ EI +VD P++ YF+Q KNG+ +RMALL+LLL G
Sbjct: 258 LERLAKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLGG 313
>gnl|CDD|234849 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 305
Score = 125 bits (317), Expect = 7e-35
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 131 EWEESADLMEVASKCDVVYQTRIQRERF-GERTDLYEEARGKYIVDQNVLRVMQKHAVVL 189
E+ DL EV DVV R+Q+ER G YEE + Y + L + + A+V+
Sbjct: 200 EYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVM 259
Query: 190 HPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
HP P R EI DV P++ F Q NG+ +RMA+L+LLL G
Sbjct: 260 HPGPVNRGVEIASDVADGPQSVIFEQVTNGVAVRMAVLELLLGG 303
>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Aspartate
transcarbamylase (ATCase) is an alternate name.PyrB
encodes the catalytic chain of aspartate
carbamoyltransferase, an enzyme of pyrimidine
biosynthesis, which organizes into trimers. In some
species, including E. coli and the Archaea but excluding
Bacillus subtilis, a regulatory subunit PyrI is also
present in an allosterically regulated hexameric
holoenzyme. Several molecular weight classes of ATCase
are described in MEDLINE:96303527 and often vary within
taxa. PyrB and PyrI are fused in Thermotoga
maritima.Ornithine carbamoyltransferases are in the same
superfamily and form an outgroup [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 301
Score = 117 bits (294), Expect = 1e-31
Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
+I + L ++G++ E+ L EV + DV+Y TRIQ+ERF + + YE+ +G Y +
Sbjct: 191 KEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQKERFPDPEE-YEKVKGSYGITLER 249
Query: 179 LRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
L +K +++HPLPR+DEI VD P A YF+QA NG+ +RMALL LLL
Sbjct: 250 LEAAKKGVIIMHPLPRVDEIDPSVDDTPHAKYFKQAFNGVPVRMALLALLL 300
>gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional.
Length = 338
Score = 84.0 bits (208), Expect = 4e-19
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 11/95 (11%)
Query: 143 SKCDVVYQTRIQRERFG--ERTDLYEEARGKYIVDQNVL-RVMQKHAVVLHPLPR----- 194
K D++Y TRIQ ERF E + Y RGK+ ++Q++ + + + V++HPLPR
Sbjct: 225 DKADILYLTRIQEERFPSQEEANKY---RGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQ 281
Query: 195 LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+E+ D+++ P A FRQA NGL IRMAL L L
Sbjct: 282 ANELDNDLNSHPNLAIFRQADNGLLIRMALFALTL 316
>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.
Length = 429
Score = 81.1 bits (200), Expect = 9e-18
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Query: 119 DDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNV 178
I + ++ G E++ DL DVVY TRIQ+ERF + + +E + ++Q +
Sbjct: 283 AYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFAD--ESFEGYTPDFQINQAL 340
Query: 179 L-RVMQKHAVVLHPLPR-----LDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ V + +++HPLPR ++++ D++ DPR A FRQ NG+ +RMA+ +LL
Sbjct: 341 VDAVCKPDTLIMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLL 397
>gnl|CDD|139876 PRK13814, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 310
Score = 49.7 bits (118), Expect = 3e-07
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 146 DVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVD 203
DV+ R+Q+ER D+ + RG + + L + A+V+HP P R EI DV
Sbjct: 219 DVIVTLRLQKERHDNSVDI-DAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVA 277
Query: 204 ADPRAAYFRQAKNGLYIRMALLKLLLV 230
+ ++ +Q +NG+ +RMA+L+L L+
Sbjct: 278 DNQQSVILQQVRNGVAMRMAVLELFLL 304
>gnl|CDD|234835 PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.
Length = 304
Score = 46.6 bits (112), Expect = 4e-06
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 118 EDDIKDYLTSQGVEWEESADLMEVASKCDVVY--------QTRIQRERFGERTDLYEEAR 169
+ ++ G E + D E DVVY Q ER +A
Sbjct: 191 PEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEER--------LKAF 242
Query: 170 GKYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKL 227
Y V++ ++ + + A+ +H LP R +E+T +V P++ + +A+N L+ + ALL
Sbjct: 243 APYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKALLAW 302
Query: 228 LL 229
LL
Sbjct: 303 LL 304
>gnl|CDD|223156 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport
and metabolism].
Length = 310
Score = 46.0 bits (110), Expect = 5e-06
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 126 TSQGVEWEESADLMEVASKCDVVYQTRI------QRERFGERTDLYEEARGKYIVDQNVL 179
+ + E + E DVVY T + + E R Y V++ ++
Sbjct: 205 SGGKITLTEDPE--EAVKGADVVY-TDVWVSMGEEAEAEERRIAF----LPPYQVNEELM 257
Query: 180 RVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ A+ +H LP R +E+T +V P + F +A+N L+ + A+L LL
Sbjct: 258 ALAGPDAIFMHCLPAHRGEEVTDEVFEGPASVVFDEAENRLHTQKAVLAALL 309
>gnl|CDD|237369 PRK13376, pyrB, bifunctional aspartate carbamoyltransferase
catalytic subunit/aspartate carbamoyltransferase
regulatory subunit; Provisional.
Length = 525
Score = 43.2 bits (102), Expect = 6e-05
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 149 YQTRIQRERFGERTDLYE---EARGKYIVDQNVLRVMQKHAVVLHPLPR---LDEITVDV 202
Y TR+Q ER GE D+ E R + L + + HPLPR I +
Sbjct: 249 YFTRLQLERMGE--DILEKEHILRKAVTFRKEFLDKLPEGVKFYHPLPRHKVYPTIPTFL 306
Query: 203 DADPRAAYFRQAKNGLYIRMALLKLL 228
D P + QA NG ++R+ LL +L
Sbjct: 307 DTLPLNGWETQAINGYWVRIVLLSML 332
>gnl|CDD|129743 TIGR00658, orni_carb_tr, ornithine carbamoyltransferase. This
family of ornithine carbamoyltransferases (OTCase) is in
a superfamily with the related enzyme aspartate
carbamoyltransferase. Most known examples are anabolic,
playing a role in arginine biosynthesis, but some are
catabolic. Most OTCases are homotrimers, but the
homotrimers are organized into dodecamers built from
four trimers in at least two species; the catabolic
OTCase of Pseudomonas aeruginosa is allosterically
regulated, while OTCase of the extreme thermophile
Pyrococcus furiosus shows both allostery and thermophily
[Amino acid biosynthesis, Glutamate family].
Length = 304
Score = 38.5 bits (90), Expect = 0.002
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 137 DLMEVASKCDVVYQTRI-----QRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191
D +E DV+Y T + + ++ ER L+ Y V++ ++ + + + +H
Sbjct: 209 DPVEAVKGADVIY-TDVWVSMGEEDKKEERLKLFRP----YQVNEELMELAKPEVIFMHC 263
Query: 192 LP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
LP R +E+T +V P + F QA+N L+ + A++ LL
Sbjct: 264 LPAHRGEEVTDEVIEGPHSIVFDQAENRLHAQKAVMVALL 303
>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
Length = 348
Score = 31.3 bits (71), Expect = 0.42
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 133 EESADLMEVASKCDVVYQ----TRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVV 188
E + D E DVVY + Q+E +R + +G + V++ ++++ A
Sbjct: 248 EITNDPAEAVKGADVVYTDVWASMGQKEEAEKR---KKAFQG-FQVNEALMKLAGPQAYF 303
Query: 189 LHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+H LP R E+T V P + F QA+N ++ + A++ L
Sbjct: 304 MHCLPAERGVEVTDGVMEAPNSIVFPQAENRMHAQNAIMLHQL 346
>gnl|CDD|235017 PRK02255, PRK02255, putrescine carbamoyltransferase; Provisional.
Length = 338
Score = 30.4 bits (69), Expect = 0.70
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 171 KYIVDQNVLRVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
KY V ++ HA +H LP R +E+T +V PR+ F +A+N L ALL
Sbjct: 251 KYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMDSPRSICFDEAENRLTAIRALLVYF 310
Query: 229 L 229
+
Sbjct: 311 M 311
>gnl|CDD|237819 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional.
Length = 302
Score = 30.0 bits (68), Expect = 0.80
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 140 EVASKCDVVY-QTRIQRERFGERTDLYE--EARGKYIVDQNVLRVMQKHAV--VLHPLP- 193
E D +Y T I G+ T L E Y V++ + M+K V+H P
Sbjct: 210 EAIEGHDAIYTDTWIS---MGDDTPLAEIKAKFAPYQVNKAL---MEKAGATFVMHCQPA 263
Query: 194 -RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
R EIT +V + +QA+N ++ + A+L LL
Sbjct: 264 HRGVEITSEVMDGEGSLILQQAENRMHAQNAVLVTLL 300
>gnl|CDD|131555 TIGR02503, type_III_SycN, type III secretion chaperone SycN.
Members of this protein family are part of the
machinery of bacterial type III secretion in a number
of bacteria that target animal cells. In the
well-studied system from Yersinia, a complex of this
protein (SycN) and YscB (pfam07329) acts as a chaperone
for the export of YopN (PMID:10094626). YopN then acts
to control effector protein secretion, in response to
calcium levels, so that secretion occurs only after
contact with the targeted eukaryotic cell [Protein
fate, Protein folding and stabilization, Cellular
processes, Pathogenesis].
Length = 119
Score = 28.6 bits (64), Expect = 1.4
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 43 NSFSLSADVSKSRLLLSHEKSMKWKQTQQLPLRNSIQCQAVETQSTP 89
S L + LLL +S++W Q ++ R C A + P
Sbjct: 30 QSGRLYVEQHDGTLLLWLARSLEWHQAEEALKRALTLCHAQRGGALP 76
>gnl|CDD|233455 TIGR01537, portal_HK97, phage portal protein, HK97 family. This
model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 341
Score = 28.5 bits (64), Expect = 2.7
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 160 ERTDLYEEARGKYIVDQNVLRVMQKHA----VVLHPLPRLDEITVDVDADPRAAYFRQ 213
+++ ++D N V+ + L L +++T+D DAD R Y+
Sbjct: 56 SAFQFWQQLILSLLLDGNAYIVIIRDKSGEIYELDLLTP-NKVTLDNDADDRLIYYVI 112
>gnl|CDD|233329 TIGR01245, trpD, anthranilate phosphoribosyltransferase. In many
widely different species, including E. coli, Thermotoga
maritima, and Archaeoglobus fulgidus, this enzymatic
domain (anthranilate phosphoribosyltransferase) is found
C-terminal to glutamine amidotransferase; the fusion
protein is designated anthranilate synthase component II
(EC 4.1.3.27) [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 330
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 177 NVLRVMQ-KHAVVLHPLPRLDEITV 200
L+ + K A+V+H LDEI++
Sbjct: 201 EALKNLGVKRALVVHGDDGLDEISL 225
>gnl|CDD|163670 cd08163, MPP_Cdc1, Saccharomyces cerevisiae CDC1 and related
proteins, metallophosphatase domain. Cdc1 (also known
as XlCdc1 in Xenopus laevis) is an endoplasmic
reticulum-localized transmembrane lipid phosphatase with
a metallophosphatase domain facing the ER lumen. In
budding yeast, the gene encoding CDC1 is essential while
nonlethal mutations cause defects in Golgi inheritance
and actin polarization. Cdc1 mutant cells accumulate an
unidentified phospholipid, suggesting that Cdc1 is a
lipid phosphatase. Cdc1 mutant cells also have highly
elevated intracellular calcium levels suggesting a
possible role for Cdc1 in calcium regulation. The 5'
flanking region of Cdc1 is a regulatory region with
conserved binding site motifs for AP1, AP2, Sp1, NF-1
and CREB. DNA polymerase delta consists of at least
four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 28.5 bits (64), Expect = 2.8
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 20/96 (20%)
Query: 35 VDKLPVHRNSFSLSADVSKSRLLLSHEKSMKWKQTQQLPL-RNSIQCQAVETQSTPSFTI 93
+ +H SFS SK R+LL+H PL R +S
Sbjct: 147 PPREFLH--SFSAMKVKSKPRILLTHV-----------PLYRPPNTSCGPLRESKTPLPY 193
Query: 94 GKKFQLDDVIESQQFDRDILNAI-----FEDDIKDY 124
G +Q +++E IL A+ F D DY
Sbjct: 194 GYGYQYQNLLEP-SLSEVILKAVQPVIAFSGDDHDY 228
>gnl|CDD|173265 PRK14804, PRK14804, ornithine carbamoyltransferase; Provisional.
Length = 311
Score = 28.5 bits (63), Expect = 3.4
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 130 VEWEESADLMEVASKCDVVY-QTRIQRERFGERTDLYE-EARGKYIVDQNVLRVMQKH-- 185
+ WE +L + S D VY T + E F + + + + R + ++ + + +
Sbjct: 206 LSWEM--NLHKAVSHADYVYTDTWLDMEFFNDPSYADKKKQRMELMMPYQINSSLMEKTN 263
Query: 186 AVVLHPLPRLD--EITVDVDADPRAAYFRQAKNGLYIRMA-LLKLL 228
A V+H +P EIT +V R+ F+QA+N L + A +LKLL
Sbjct: 264 AKVMHDMPIHAGYEITREVVLSDRSIIFQQAENRLDAQKAVILKLL 309
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 28.6 bits (64), Expect = 3.4
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 18/72 (25%)
Query: 122 KDYLTSQGVEWEESADLMEVASKCD-VVYQTRIQRERFG-----------------ERTD 163
K Y+ G+ + +A EV + D V+ T + RF E TD
Sbjct: 205 KQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTD 264
Query: 164 LYEEARGKYIVD 175
+ RG VD
Sbjct: 265 IELTERGAIKVD 276
>gnl|CDD|213796 TIGR03316, ygeW, probable carbamoyltransferase YgeW. Members of
this protein family include the ygeW gene product of
Escherichia coli. The function is unknown. Members show
homology to ornithine carbamoyltransferase (TIGR00658)
and aspartate carbamoyltransferase
(carbamoyltransferase), and therefore may belong to the
carbamoyltransferases in function. Members often are
found in a large, conserved genomic region associated
with purine catabolism.
Length = 357
Score = 28.0 bits (62), Expect = 3.9
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 28/137 (20%)
Query: 117 FEDDIKDYLTSQGVEWEESADLMEVASKCDVVY-QTRIQRERFGERTDLY--EEARGKYI 173
+ K G + + + E D+VY ++ +RT+LY + G
Sbjct: 218 VVEVAKKNAAESGGSFRQVNSMEEAFKDADIVYPKSWAPYAVMEKRTELYRANDHEGLKA 277
Query: 174 VDQNVLRVMQKH-----------------AVVLHPLP--------RLDEITVDVDADPRA 208
+++ L KH A+ +H LP + E+T V R
Sbjct: 278 LEKQCLAQNAKHKDWHCTEERMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFDKYRI 337
Query: 209 AYFRQAKNGLYIRMALL 225
A +++A YI A++
Sbjct: 338 ATYKEASWKPYIIAAMI 354
>gnl|CDD|235304 PRK04523, PRK04523, N-acetylornithine carbamoyltransferase;
Reviewed.
Length = 335
Score = 28.2 bits (63), Expect = 4.1
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 135 SADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKY---IVDQNVLRVMQKHAVVLHP 191
S D+ + DVVY F + + R +Y IVD+ + + V H
Sbjct: 235 SHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDER-KMALTNNGVFSHC 293
Query: 192 LP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLL 228
LP R ++T V P +A+N L+++ A++ L
Sbjct: 294 LPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAAL 332
>gnl|CDD|239419 cd03166, CD63_LEL, Tetraspanin, extracellular domain or large
extracellular loop (LEL), CD63 family. Tetraspanins are
trans-membrane proteins with 4 trans-membrane segments.
Both the N- and C-termini lie on the intracellular side
of the membrane. This alignment model spans the
extracellular domain between the 3rd and 4th
trans-membrane segment. Tetraspanins are involved in
diverse processes and their various functions may relate
to their ability to act as molecular facilitators.
Tetraspanins associate laterally with one another and
cluster dynamically with numerous parnter domains in
membrane microdomains, forming a network of
multimolecular complexes, the "tetraspanin web". CD63 is
present in platelets, neutrophils, and endothelial
cells, amongst others. In platelets it associates with
the integrin alphaIIBbeta3 and may modulate
alphaIIbbeta3-dependent cytoskeletal reorganization.
Length = 99
Score = 26.7 bits (59), Expect = 4.2
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 110 RDILNAIFEDDIKDYLT--SQGVEWEESADLMEVASKC 145
RD + + F D ++ ++ ++ + D M+ KC
Sbjct: 4 RDKVMSEFNDSFNQMISNYNKTNDFRKILDRMQKDLKC 41
>gnl|CDD|234682 PRK00188, trpD, anthranilate phosphoribosyltransferase;
Provisional.
Length = 339
Score = 27.7 bits (63), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 178 VLRVM-QKHAVVLHPLPRLDEITV 200
VL+ + K A+V+H LDEI++
Sbjct: 206 VLKRLGSKRALVVHGSDGLDEISL 229
>gnl|CDD|234932 PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.
Length = 482
Score = 27.5 bits (62), Expect = 6.7
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 104 ESQQFDRDILNAIFE-------DDIKDYLTSQGVEWEESADLME 140
E ++FD IL+ + E +I + + VE E ++L
Sbjct: 363 EEKKFDFAILDRVVEEARNIDIREIAEQTEQEVVEVETVSELPP 406
>gnl|CDD|109839 pfam00799, Gemini_AL1, Geminivirus Rep catalytic domain. The AL1
proteins encodes the replication initiator protein (Rep)
of geminiviruses, which is a replicon-specific initiator
enzyme and is an essential component of the replisome.
For geminivirus Rep protein, this N-terminal region is
crucial for origin recognition and DNA cleavage and
nucleotidyl transfer.
Length = 114
Score = 26.2 bits (58), Expect = 7.4
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 78 IQCQAVETQSTPSFTIGKKFQLDDVIESQQFDRDILNAIFEDDIKDYLTSQGVEWE 133
IQ + + P F F L S F +I A D+K+Y+ G WE
Sbjct: 56 IQLEGKFRITNPRF-----FDLVSPTRSAHFHPNIQAAKSSSDVKEYIDKDGDTWE 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.379
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,413,735
Number of extensions: 1053453
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 39
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)