RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026841
(232 letters)
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 153
Score = 85.2 bits (210), Expect = 1e-21
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 128 QGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAV 187
+E + EV ++ DV+Y TRIQ+ERF YE+ +G YIV ++ M+K ++
Sbjct: 51 LNYPVKEVENPFEVINEVDVLYVTRIQKERF-VDEMEYEKIKGSYIVSLDLANKMKKDSI 109
Query: 188 VLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+LHPLPR++EI VD +A YF QA G+ +RM++L +
Sbjct: 110 ILHPLPRVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIY 151
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 157
Score = 81.8 bits (201), Expect = 3e-20
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 116 IFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVD 175
I + L +G++ E+ L +V K DV+Y TRIQ+ERF Y + +G Y V+
Sbjct: 42 RMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERF-PDEQEYLKVKGSYQVN 100
Query: 176 QNVLRVMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
VL + ++HPLPR+DEI +VD A YFRQ NG+ +RMALL L+L
Sbjct: 101 LKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVL 154
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 160
Score = 81.4 bits (200), Expect = 5e-20
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLR 180
I D L +G+ W + + EV ++ D++Y TR+Q+ER Y + ++++ + L
Sbjct: 48 ILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL--DPSEYANVKAQFVLRASDLH 105
Query: 181 VMQKHAVVLHPLPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
+ + VLHPLPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 106 NAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 154
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 163
Score = 79.0 bits (194), Expect = 4e-19
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 132 WEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191
+E D ++ DV+Y + + + V++++++ + + +H
Sbjct: 60 FELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHC 119
Query: 192 LP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLVG 231
LP R +E+T DV P + + QA+N L+ + A+L L++ G
Sbjct: 120 LPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGG 161
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 79.4 bits (195), Expect = 4e-19
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
Query: 114 NAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYI 173
+A + Y G + + D +E A +V+ E +A Y
Sbjct: 42 DASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQ 101
Query: 174 VDQNVLRVMQKHAVVLHPLP-RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
V +V LH LP + +E+ +V PR+ F +A+N + MA++ LL
Sbjct: 102 VTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLL 158
>gi|154685965|ref|YP_001421126.1|(145-295:304) aspartate
carbamoyltransferase catalytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
Full=Aspartate carbamoyltransferase; AltName:
Full=Aspartate transcarbamylase; Short=ATCase
gi|154351816|gb|ABS73895.1| PyrB [Bacillus
amyloliquefaciens FZB42] E=8e-68 s/c=1.71 id=80%
cov=101%
Length = 151
Score = 77.9 bits (191), Expect = 9e-19
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 132 WEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191
+ E DVV RIQ ER D + Y + M++HA+++HP
Sbjct: 47 FGTCVQTDEAIQASDVVMLLRIQNERHQTEAD-QKGYLEAYGLTAKRAESMKRHAIIMHP 105
Query: 192 LP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
P R EI + ++ F+Q +NG+YIRMA+LK L
Sbjct: 106 APVNRGVEIDTTLVECGKSRIFKQMENGVYIRMAVLKRAL 145
>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase
catalytic subunit {Escherichia coli [TaxId: 562]}
Length = 310
Score = 80.7 bits (198), Expect = 1e-18
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 132 WEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191
W + + EV ++ D++Y TR+Q+ER Y + ++++ + L + + VLHP
Sbjct: 209 WSLHSSIEEVMAEVDILYMTRVQKER--LDPSEYANVKAQFVLRASDLHNAKANMKVLHP 266
Query: 192 LPRLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
LPR+DEI DVD P A YF+QA NG++ R ALL L+L
Sbjct: 267 LPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVL 304
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 73.0 bits (178), Expect = 8e-17
Identities = 16/113 (14%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 121 IKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERT-DLYEEARGKYIVDQNVL 179
++ + +++L E + DVVY ++ + + + ++ +
Sbjct: 49 CQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVME 108
Query: 180 RVMQKHAVVLHPLP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLLV 230
+ + +H LP + E+T +V ++ + +A+N + A++ L+
Sbjct: 109 MTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATLL 161
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 161
Score = 69.4 bits (169), Expect = 2e-15
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 4/100 (4%)
Query: 132 WEESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVDQNVLRVMQKHAVVLHP 191
D M+ D +Y + + + + +A +H
Sbjct: 54 ARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQ--ILSTDRNWTVGDRQMAVTNNAYFMHC 111
Query: 192 LP--RLDEITVDVDADPRAAYFRQAKNGLYIRMALLKLLL 229
LP R +T DV P++ +A N +LK LL
Sbjct: 112 LPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLL 151
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 185
Score = 69.8 bits (170), Expect = 2e-15
Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 23/133 (17%)
Query: 120 DIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLY--EEARGKYIVDQN 177
K + G + + D E D V+ +E + +
Sbjct: 50 QCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEI 109
Query: 178 VLRVMQKHAVVLHPLP---------------------RLDEITVDVDADPRAAYFRQAKN 216
+ A +H LP E+T DV P F QA+N
Sbjct: 110 MKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAEN 169
Query: 217 GLYIRMALLKLLL 229
++ A+L L
Sbjct: 170 RMHTIKAILVSTL 182
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase
{Escherichia coli [TaxId: 562]}
Length = 183
Score = 66.4 bits (161), Expect = 3e-14
Identities = 19/138 (13%), Positives = 37/138 (26%), Gaps = 22/138 (15%)
Query: 114 NAIFEDDIKDYLTSQGVEWEESADLMEVASKCDVVYQTRIQRERFGERTDLYE--EARGK 171
A + + G + D+ + D +Y + R
Sbjct: 44 EAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREY 103
Query: 172 YIVDQNVLRVMQKHAVVLHPLP--------------------RLDEITVDVDADPRAAYF 211
+ + + LH LP E+T +V + F
Sbjct: 104 QVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVF 163
Query: 212 RQAKNGLYIRMALLKLLL 229
QA+N ++ A++ L
Sbjct: 164 DQAENRMHTIKAVMVATL 181
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 28.5 bits (63), Expect = 0.44
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 99 LDDVIESQQFDRDILNAIFEDDIKDYLTSQGVEWEESADL 138
++ + Q + L AI+ D +D E ++
Sbjct: 8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEI 47
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase)
{Bacteriophage T7 [TaxId: 10760]}
Length = 129
Score = 27.1 bits (60), Expect = 0.91
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 117 FEDDIKDYLTSQGVEWE-ESADLMEVASKCDVVYQTRIQRERFGERTDLYEEARGKYIVD 175
ED + L S+G+++E E + V + Y ++ E +G + D
Sbjct: 3 LEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLP-----NGIFVETKGLWESD 57
Query: 176 QNVLRVMQKHAVVLHPLPRLD 196
+KH ++ P LD
Sbjct: 58 DR-----KKHLLIREQHPELD 73
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 27.2 bits (59), Expect = 1.2
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 64 MKWKQTQQLPLRNSIQCQAVETQSTPSFTIGKKFQLDDVIESQQFDRDILNAIFEDDIK- 122
+ L + V+ + P+ + K+ + Q D ++ +
Sbjct: 126 WNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKY----QLNPQGMDTSNMDVFVQQYADT 181
Query: 123 -DYLTSQ 128
YL+ +
Sbjct: 182 VKYLSEK 188
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 56
Score = 24.0 bits (52), Expect = 4.1
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 9 CMMNKSSFAPRVTNCKK 25
C + R T C++
Sbjct: 22 CRKCGALNPIRATKCRR 38
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 197
Score = 24.8 bits (54), Expect = 9.2
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 117 FEDDIKDYLTSQGVEWEESADLMEVAS 143
FE +I + L + DL A
Sbjct: 60 FEKEIDEILDQIYNQNSNCNDLCTSAL 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.379
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 821,846
Number of extensions: 35827
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 17
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)