Query 026843
Match_columns 232
No_of_seqs 187 out of 774
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 8.2E-16 2.8E-20 111.8 4.8 40 89-129 4-43 (63)
2 2vut_I AREA, nitrogen regulato 99.6 3.9E-16 1.3E-20 105.8 2.9 36 93-129 2-37 (43)
3 1gnf_A Transcription factor GA 99.6 7.1E-16 2.4E-20 106.0 4.0 38 91-129 3-40 (46)
4 4gat_A Nitrogen regulatory pro 99.5 1.8E-15 6.1E-20 110.9 3.0 41 89-130 6-46 (66)
5 2kae_A GATA-type transcription 99.5 7.5E-15 2.6E-19 109.0 4.1 42 89-130 5-46 (71)
6 4hc9_A Trans-acting T-cell-spe 99.3 1.1E-12 3.9E-17 104.5 4.0 40 90-130 57-96 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 4.1E-12 1.4E-16 101.3 3.2 37 90-127 3-39 (115)
8 3cw2_K Translation initiation 69.0 2.2 7.7E-05 34.6 2.1 30 93-123 104-133 (139)
9 2d74_B Translation initiation 64.9 2.4 8.2E-05 34.9 1.5 29 93-122 105-133 (148)
10 1dl6_A Transcription factor II 63.4 2.9 9.9E-05 28.9 1.5 32 90-124 9-40 (58)
11 2iqj_A Stromal membrane-associ 61.5 4.3 0.00015 32.6 2.4 36 90-127 25-60 (134)
12 1k81_A EIF-2-beta, probable tr 60.4 0.87 3E-05 29.1 -1.5 28 94-122 2-29 (36)
13 3dwd_A ADP-ribosylation factor 59.3 6 0.00021 32.6 3.0 36 90-127 36-71 (147)
14 1nee_A EIF-2-beta, probable tr 59.1 2.4 8.1E-05 34.5 0.5 29 93-122 103-131 (138)
15 2owa_A Arfgap-like finger doma 59.1 4.1 0.00014 33.0 1.9 36 90-127 34-69 (138)
16 2crr_A Stromal membrane-associ 58.5 5.6 0.00019 32.2 2.6 35 91-127 28-62 (141)
17 2crw_A ARF GAP 3, ADP-ribosyla 56.9 7.7 0.00026 31.8 3.2 36 90-127 27-62 (149)
18 2b0o_E UPLC1; arfgap, structur 56.3 6.9 0.00024 33.3 3.0 35 90-126 40-74 (301)
19 2p57_A GTPase-activating prote 54.3 5.3 0.00018 32.7 1.8 36 90-127 35-70 (144)
20 2olm_A Nucleoporin-like protei 54.3 4.3 0.00015 32.8 1.3 35 90-126 23-57 (140)
21 3k7a_M Transcription initiatio 51.9 5.7 0.00019 35.6 1.8 30 92-122 21-50 (345)
22 2yrc_A Protein transport prote 45.1 6.9 0.00023 27.4 1.0 36 87-122 4-41 (59)
23 3cng_A Nudix hydrolase; struct 42.6 7 0.00024 31.0 0.8 30 92-121 3-32 (189)
24 2g2k_A EIF-5, eukaryotic trans 40.3 4.1 0.00014 34.3 -1.0 30 93-123 97-128 (170)
25 3sub_A ADP-ribosylation factor 38.7 15 0.00051 30.8 2.2 34 91-126 21-54 (163)
26 3o47_A ADP-ribosylation factor 38.4 15 0.00053 31.9 2.4 36 90-127 35-70 (329)
27 1pft_A TFIIB, PFTFIIBN; N-term 37.7 5.8 0.0002 26.0 -0.4 29 93-124 6-34 (50)
28 3jue_A Arfgap with coiled-coil 36.4 21 0.00072 31.8 3.0 35 90-126 43-77 (368)
29 2e9h_A EIF-5, eukaryotic trans 34.9 6.2 0.00021 32.8 -0.7 29 93-122 104-134 (157)
30 2yrk_A Zinc finger homeobox pr 31.8 6.1 0.00021 27.9 -1.1 20 108-127 7-26 (55)
31 3lju_X ARF-GAP with dual PH do 31.6 19 0.00064 32.7 1.8 35 90-126 32-66 (386)
32 1pqv_S STP-alpha, transcriptio 30.7 8.7 0.0003 34.3 -0.5 34 92-125 268-307 (309)
33 1dcq_A PYK2-associated protein 29.4 33 0.0011 28.6 2.9 36 90-127 15-50 (278)
34 4bbr_M Transcription initiatio 26.1 11 0.00038 33.9 -0.7 9 91-99 41-49 (345)
35 3lvq_E ARF-GAP with SH3 domain 25.1 28 0.00096 31.5 1.8 35 90-126 21-55 (497)
36 3po3_S Transcription elongatio 24.6 8.4 0.00029 32.0 -1.6 35 91-125 136-176 (178)
37 1pcx_A Protein transport prote 24.3 23 0.00079 35.5 1.1 32 91-122 111-142 (810)
38 3efo_B SEC24 related gene fami 23.8 20 0.00069 35.8 0.6 33 90-122 96-128 (770)
39 1qyp_A RNA polymerase II; tran 22.8 17 0.0006 24.3 -0.1 33 92-124 15-53 (57)
40 1m2v_B SEC24, protein transpor 22.5 26 0.0009 35.9 1.2 32 91-122 227-258 (926)
41 3k1f_M Transcription initiatio 22.3 19 0.00064 31.1 0.0 34 90-124 19-52 (197)
42 2ds5_A CLPX, ATP-dependent CLP 21.9 42 0.0014 22.8 1.7 32 92-125 11-44 (51)
43 3eh2_A Protein transport prote 21.2 23 0.00079 35.3 0.4 33 90-122 92-124 (766)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.59 E-value=8.2e-16 Score=111.85 Aligned_cols=40 Identities=38% Similarity=0.816 Sum_probs=36.3
Q ss_pred CCCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843 89 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 129 (232)
Q Consensus 89 ~~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~ 129 (232)
......|++|++++||+||+||+|+ +|||||||+|++...
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence 3567889999999999999999997 999999999998764
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.59 E-value=3.9e-16 Score=105.83 Aligned_cols=36 Identities=47% Similarity=1.024 Sum_probs=33.2
Q ss_pred ccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843 93 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 129 (232)
Q Consensus 93 ~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~ 129 (232)
+.|++|++++||+||+||+|+ +|||||||+|++...
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence 579999999999999999996 999999999998754
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.58 E-value=7.1e-16 Score=105.95 Aligned_cols=38 Identities=42% Similarity=0.957 Sum_probs=34.4
Q ss_pred CCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843 91 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 129 (232)
Q Consensus 91 ~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~ 129 (232)
..+.|++|++++||+||+||+|+ +|||||||||++...
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ 40 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence 56789999999999999999996 999999999987643
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.54 E-value=1.8e-15 Score=110.87 Aligned_cols=41 Identities=44% Similarity=0.913 Sum_probs=36.7
Q ss_pred CCCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843 89 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 130 (232)
Q Consensus 89 ~~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~ 130 (232)
.+..+.|++|++++||+||+||+|+ +|||||||+|++....
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC
Confidence 4678999999999999999999996 9999999999986543
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.51 E-value=7.5e-15 Score=108.99 Aligned_cols=42 Identities=40% Similarity=0.586 Sum_probs=33.0
Q ss_pred CCCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843 89 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 130 (232)
Q Consensus 89 ~~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~ 130 (232)
......|+||+|++||+||+||.+..+|||||||+|++....
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKT 46 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSC
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCC
Confidence 456789999999999999995444448999999999987543
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.30 E-value=1.1e-12 Score=104.46 Aligned_cols=40 Identities=38% Similarity=0.821 Sum_probs=36.5
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 130 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~ 130 (232)
.....|++|++++||+||+||+| .+|||||||||++....
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence 45689999999999999999999 89999999999988654
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.21 E-value=4.1e-12 Score=101.25 Aligned_cols=37 Identities=43% Similarity=0.971 Sum_probs=31.8
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
...+.|+||++++||+||+||+| .+|||||||+|+..
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~ 39 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMN 39 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhc
Confidence 45789999999999999999999 79999999988754
No 8
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=68.97 E-value=2.2 Score=34.63 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=21.5
Q ss_pred ccccCCCCCCCCcccCCCCCCcccchHHHHH
Q 026843 93 RICSDCNTTTTPLWRSGPRGPKSLCNACGIR 123 (232)
Q Consensus 93 ~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~ 123 (232)
-.|..|+..+|-+-+.+..- -.-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 67999999999999866444 4689999954
No 9
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=64.86 E-value=2.4 Score=34.88 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=23.4
Q ss_pred ccccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 93 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 93 ~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
-.|..|+..+|-+-+.+..- -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 57999999999998865443 468999983
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=63.42 E-value=2.9 Score=28.95 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=18.7
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 124 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~ 124 (232)
.....|.+|+.+. +-.....| .+.|..||+-+
T Consensus 9 l~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred cccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 3445677777643 33344445 57777777643
No 11
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=61.48 E-value=4.3 Score=32.61 Aligned_cols=36 Identities=28% Similarity=0.647 Sum_probs=29.8
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
.....|.+|++.. |.|-.-.-| ..+|-.|.-..|..
T Consensus 25 p~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 25 EDNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred cCCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcC
Confidence 4567899999875 999999999 78999997766654
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=60.35 E-value=0.87 Score=29.06 Aligned_cols=28 Identities=32% Similarity=0.725 Sum_probs=20.9
Q ss_pred cccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 94 ICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 94 ~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
.|..|+..+|-+-+.+..- -.-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 4999999999888754332 346999983
No 13
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=59.32 E-value=6 Score=32.59 Aligned_cols=36 Identities=28% Similarity=0.640 Sum_probs=30.0
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
...+.|.+|++.. |.|-.-.-| -.||-.|.-..|..
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~L 71 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGL 71 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcC
Confidence 4567899999875 999999999 79999997766654
No 14
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=59.13 E-value=2.4 Score=34.46 Aligned_cols=29 Identities=38% Similarity=0.784 Sum_probs=23.3
Q ss_pred ccccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 93 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 93 ~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
-.|..|+..+|-+-+.+..- -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 57999999999998865443 468999983
No 15
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=59.13 E-value=4.1 Score=33.00 Aligned_cols=36 Identities=31% Similarity=0.621 Sum_probs=29.5
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
.....|.+|++.. |.|-.-.-| -.+|-.|.-..|..
T Consensus 34 p~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~L 69 (138)
T 2owa_A 34 PENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKM 69 (138)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTT
T ss_pred cCCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCC
Confidence 3467899999875 999999999 78999997766643
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.46 E-value=5.6 Score=32.17 Aligned_cols=35 Identities=29% Similarity=0.635 Sum_probs=28.8
Q ss_pred CCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 91 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 91 ~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
....|.+|++. -|.|-.-.-| ..+|-.|.-..|..
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHH
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcC
Confidence 45679999987 5899999999 78999997766654
No 17
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.94 E-value=7.7 Score=31.82 Aligned_cols=36 Identities=33% Similarity=0.679 Sum_probs=29.4
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
.....|.+|++. -|.|-.-.-| ..+|-.|.-..|..
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSL 62 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHH
T ss_pred cCCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccC
Confidence 456789999975 5899999999 78999997666654
No 18
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=56.29 E-value=6.9 Score=33.35 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=28.2
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k 126 (232)
.....|.+|++.. |.|-.-.-| ..+|-.|--..|.
T Consensus 40 ~~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~ 74 (301)
T 2b0o_E 40 PGNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRE 74 (301)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHh
Confidence 4567899999965 999999999 7999999544443
No 19
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=54.34 E-value=5.3 Score=32.72 Aligned_cols=36 Identities=33% Similarity=0.626 Sum_probs=29.4
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
...+.|.+|+... |.|-.-.-| ..+|-.|.-..|..
T Consensus 35 p~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~L 70 (144)
T 2p57_A 35 PTNKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSL 70 (144)
T ss_dssp GGGGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCC
Confidence 4467899999864 999999889 78999997766654
No 20
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=54.28 E-value=4.3 Score=32.79 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=28.7
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k 126 (232)
.+...|.+|++. -|.|-.-.-| ..+|-.|.-..|.
T Consensus 23 p~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 23 PHNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred cCCCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 346789999986 6999999999 7899999766654
No 21
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=51.90 E-value=5.7 Score=35.56 Aligned_cols=30 Identities=23% Similarity=0.667 Sum_probs=12.7
Q ss_pred CccccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 92 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 92 ~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
...|.+|+.+.+-.-..-..| .++|..||+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCe
Confidence 334555555421121222334 345555555
No 22
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=45.09 E-value=6.9 Score=27.37 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=30.9
Q ss_pred CCCCCCccccC--CCCCCCCcccCCCCCCcccchHHHH
Q 026843 87 NSNNTVRICSD--CNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 87 ~~~~~~~~C~~--Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
.......+|.. |++-.-|.++-...|....||-|+.
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCC
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCC
Confidence 33567889998 9999999999888888899999974
No 23
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=42.57 E-value=7 Score=30.98 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=25.9
Q ss_pred CccccCCCCCCCCcccCCCCCCcccchHHH
Q 026843 92 VRICSDCNTTTTPLWRSGPRGPKSLCNACG 121 (232)
Q Consensus 92 ~~~C~~Cgtt~TP~WRrGP~G~~~LCNACG 121 (232)
.+.|..||+..+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 568999999998877788887778999999
No 24
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=40.29 E-value=4.1 Score=34.27 Aligned_cols=30 Identities=30% Similarity=0.675 Sum_probs=22.7
Q ss_pred ccccCCCCCCCCcccC--CCCCCcccchHHHHH
Q 026843 93 RICSDCNTTTTPLWRS--GPRGPKSLCNACGIR 123 (232)
Q Consensus 93 ~~C~~Cgtt~TP~WRr--GP~G~~~LCNACGL~ 123 (232)
-.|..|+..+|-+-+. +..- -.-|+|||-.
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~-~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTI-GNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEE-EEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccccCCc
Confidence 5699999999998883 3222 3579999864
No 25
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=38.69 E-value=15 Score=30.78 Aligned_cols=34 Identities=32% Similarity=0.629 Sum_probs=28.0
Q ss_pred CCccccCCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 026843 91 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126 (232)
Q Consensus 91 ~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k 126 (232)
....|.+|++. -|.|-.-.-| ..+|-.|.-..|.
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~ 54 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRS 54 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcC
Confidence 46789999996 5999999999 7999999655554
No 26
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=38.36 E-value=15 Score=31.92 Aligned_cols=36 Identities=28% Similarity=0.640 Sum_probs=29.0
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
.....|.+|+.. -|.|-.-.-| -.+|-.|.--.|..
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGL 70 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhccc
Confidence 456789999985 5799999999 78999997666553
No 27
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=37.73 E-value=5.8 Score=25.95 Aligned_cols=29 Identities=28% Similarity=0.770 Sum_probs=13.6
Q ss_pred ccccCCCCCCCCcccCCCCCCcccchHHHHHH
Q 026843 93 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 124 (232)
Q Consensus 93 ~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~ 124 (232)
..|.+|+.+ ++-.....| ...|..||+-|
T Consensus 6 ~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred EeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 346666552 222222233 45666666543
No 28
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=36.39 E-value=21 Score=31.84 Aligned_cols=35 Identities=31% Similarity=0.648 Sum_probs=28.3
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k 126 (232)
.....|.+|++. -|.|-.-.-| ..+|-.|.-..|.
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~ 77 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLG-VTLCIQCSGIHRS 77 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhc
Confidence 456789999986 5999999999 7999999654444
No 29
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.89 E-value=6.2 Score=32.77 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=21.6
Q ss_pred ccccCCCCCCCCccc--CCCCCCcccchHHHH
Q 026843 93 RICSDCNTTTTPLWR--SGPRGPKSLCNACGI 122 (232)
Q Consensus 93 ~~C~~Cgtt~TP~WR--rGP~G~~~LCNACGL 122 (232)
-.|..|+..+|-+-+ .+..- -.-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~-~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTI-GNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEE-EEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccCCCC
Confidence 579999999998886 32222 357999984
No 30
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=31.82 E-value=6.1 Score=27.88 Aligned_cols=20 Identities=30% Similarity=0.768 Sum_probs=16.2
Q ss_pred CCCCCCcccchHHHHHHHHh
Q 026843 108 SGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 108 rGP~G~~~LCNACGL~~~k~ 127 (232)
.+|+||++-|.-||..|--.
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 57889999999999877543
No 31
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=31.59 E-value=19 Score=32.75 Aligned_cols=35 Identities=29% Similarity=0.593 Sum_probs=28.7
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k 126 (232)
.+...|++|++. -|.|-.-.-| ..||-.|.-..+.
T Consensus 32 ~~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~ 66 (386)
T 3lju_X 32 PGNARCADCGAP-DPDWASYTLG-VFICLSCSGIHRN 66 (386)
T ss_dssp GGGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHT
T ss_pred cCCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhC
Confidence 445679999997 7999999999 7999999765554
No 32
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=30.65 E-value=8.7 Score=34.34 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=24.8
Q ss_pred CccccCCCCCCCCcc----cCCCCCCc--ccchHHHHHHH
Q 026843 92 VRICSDCNTTTTPLW----RSGPRGPK--SLCNACGIRQR 125 (232)
Q Consensus 92 ~~~C~~Cgtt~TP~W----RrGP~G~~--~LCNACGL~~~ 125 (232)
...|..|+-...-.| |.+++|.. +.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 457999998775444 66666633 48999999885
No 33
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=29.36 E-value=33 Score=28.60 Aligned_cols=36 Identities=28% Similarity=0.611 Sum_probs=28.7
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~ 127 (232)
.....|.+||+.. |.|-+-.-| -.+|-.|--..|..
T Consensus 15 ~~n~~c~dc~~~~-p~w~s~~~g-~~~c~~c~~~hr~l 50 (278)
T 1dcq_A 15 TGNDVCCDCGAPD-PTWLSTNLG-ILTCIECSGIHREL 50 (278)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCCcCCCCCCCC-CCeEEecCC-eEEcHHHHHHHhhc
Confidence 4567899999985 799999999 78999996555543
No 34
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.14 E-value=11 Score=33.93 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=4.9
Q ss_pred CCccccCCC
Q 026843 91 TVRICSDCN 99 (232)
Q Consensus 91 ~~~~C~~Cg 99 (232)
+..+|.+||
T Consensus 41 G~~vC~~CG 49 (345)
T 4bbr_M 41 GDVVCALCG 49 (345)
T ss_dssp TEEEETTTC
T ss_pred CcEEeCCCC
Confidence 455555555
No 35
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=25.11 E-value=28 Score=31.52 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=28.0
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k 126 (232)
.+...|.+|++ .-|.|-.-.-| -.+|-.|-=..|.
T Consensus 21 ~~n~~c~dc~~-~~p~w~s~~~~-~~~c~~c~~~hr~ 55 (497)
T 3lvq_E 21 PGNSQCCDCGA-ADPTWLSTNLG-VLTCIQCSGVHRE 55 (497)
T ss_dssp TTTTBCTTTCC-BSCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCCcccCCCC-CCCCEEEechh-HHhHHhhHHHHHh
Confidence 45678999996 45899999889 7899999655554
No 36
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=24.61 E-value=8.4 Score=32.02 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=22.9
Q ss_pred CCccccCCCCCCC---Ccc-cCCCCCCc--ccchHHHHHHH
Q 026843 91 TVRICSDCNTTTT---PLW-RSGPRGPK--SLCNACGIRQR 125 (232)
Q Consensus 91 ~~~~C~~Cgtt~T---P~W-RrGP~G~~--~LCNACGL~~~ 125 (232)
....|..|+-... ..+ |++.++.. +.|..||-+|+
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 3457999997663 223 55555533 47999997764
No 37
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=24.33 E-value=23 Score=35.55 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=28.6
Q ss_pred CCccccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 91 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 91 ~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
...+|..|++---|..+-...|.+..||-|+.
T Consensus 111 ~pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~ 142 (810)
T 1pcx_A 111 LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 142 (810)
T ss_dssp CCCBCTTTCCBCCTTCEEETTTTEEECTTTCC
T ss_pred CCCccCCccCEecCceEEeCCCCEEEccCCCC
Confidence 47899999999999988888888899999975
No 38
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=23.84 E-value=20 Score=35.80 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=29.5
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
..+.+|..|++---|..+=...|.+..||-|+.
T Consensus 96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 128 (770)
T 3efo_B 96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNC 128 (770)
T ss_dssp TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCC
T ss_pred CCCCccCCCCCCcCCceEEecCCCEEEeccccc
Confidence 457899999999999998888888999999975
No 39
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.76 E-value=17 Score=24.34 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=23.2
Q ss_pred CccccCCCCCC----CCcccCCCCCCc--ccchHHHHHH
Q 026843 92 VRICSDCNTTT----TPLWRSGPRGPK--SLCNACGIRQ 124 (232)
Q Consensus 92 ~~~C~~Cgtt~----TP~WRrGP~G~~--~LCNACGL~~ 124 (232)
...|.+|+-.. +-+||...++.. +.|..||-.|
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 45699999854 446888776632 4898898655
No 40
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=22.47 E-value=26 Score=35.91 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=28.6
Q ss_pred CCccccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 91 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 91 ~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
...+|..|++---|..+-...|.+..||-|+.
T Consensus 227 ~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~ 258 (926)
T 1m2v_B 227 LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 258 (926)
T ss_dssp CCCBCSSSCCBCCTTCEEETTTTEEECTTTCC
T ss_pred CCCccCCccCEecCceEEeCCCCEEEccCCCC
Confidence 47899999999999988888888999999975
No 41
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.25 E-value=19 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=22.0
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 124 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~ 124 (232)
.....|..|+...+-+--.-..| .++|..||+-+
T Consensus 19 n~~~~CPECGs~~t~IV~D~erG-E~VCsdCGLVL 52 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGT-EEEETTTCBBC
T ss_pred ccCeECcCCCCcCCeEEEeCCCC-EEEEcCCCCCc
Confidence 44557999988544343333445 68999998854
No 42
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=21.90 E-value=42 Score=22.84 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=21.5
Q ss_pred CccccCCCCCCCCc--ccCCCCCCcccchHHHHHHH
Q 026843 92 VRICSDCNTTTTPL--WRSGPRGPKSLCNACGIRQR 125 (232)
Q Consensus 92 ~~~C~~Cgtt~TP~--WRrGP~G~~~LCNACGL~~~ 125 (232)
...|+-||-++... .=.|| | .++||.|--.-.
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~~~ 44 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCN 44 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-C-CEehHHHHHHHH
Confidence 35799999877532 23455 3 589999965443
No 43
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=21.21 E-value=23 Score=35.35 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=28.8
Q ss_pred CCCccccCCCCCCCCcccCCCCCCcccchHHHH
Q 026843 90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122 (232)
Q Consensus 90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL 122 (232)
..+.+|..|++---|..+=...|.+..||-|+.
T Consensus 92 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 124 (766)
T 3eh2_A 92 SGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSC 124 (766)
T ss_dssp GCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCC
T ss_pred CCCCccCCCCCEeCCceEEecCCCEEEeccccc
Confidence 457899999999999988777888899999976
Done!